AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140700 MtrunA17_Chr7g0222641 99.250 400 3 0 1 400 1 400 0.0 827
Msa1140700 MtrunA17_Chr8g0357061 60.367 381 143 4 21 395 12 390 1.16e-160 457
Msa1140700 MtrunA17_Chr2g0310301 61.765 374 137 4 25 395 19 389 5.79e-159 452
Msa1140700 MtrunA17_Chr3g0119281 57.181 376 143 5 29 397 33 397 1.59e-144 416
Msa1140700 MtrunA17_Chr3g0108381 57.317 328 135 2 69 396 72 394 9.44e-130 379
Msa1140700 MtrunA17_Chr5g0432881 56.098 328 139 3 69 396 65 387 1.06e-125 368
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140700 AT2G39450.1 81.313 396 72 1 5 400 1 394 0.0 608
Msa1140700 AT1G16310.1 59.898 394 138 5 13 395 41 425 1.26e-163 466
Msa1140700 AT1G79520.1 62.105 380 130 4 24 395 25 398 7.41e-163 463
Msa1140700 AT1G79520.2 61.240 387 134 5 24 395 25 410 2.16e-162 462
Msa1140700 AT1G79520.3 66.176 340 113 2 57 395 7 345 2.61e-162 460
Msa1140700 AT1G79520.4 66.176 340 113 2 57 395 7 345 2.61e-162 460
Msa1140700 AT1G16310.2 66.773 313 102 2 84 395 1 312 1.47e-150 429
Msa1140700 AT3G58060.2 53.977 352 157 3 50 396 51 402 2.21e-126 371
Msa1140700 AT3G58060.1 53.977 352 157 3 50 396 51 402 2.21e-126 371

Find 109 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTCTGGACCTCCTTTC+TGG 0.043075 7_4:-12946994 Msa1140700:CDS
TCCTTTCTGGATTTATCTTA+TGG 0.146709 7_4:-12946981 Msa1140700:CDS
CCTAGGGCTGCAAATAATTT+TGG 0.179599 7_4:-12946732 Msa1140700:CDS
CTTCTTTCAGTTTCTGATAA+TGG 0.222068 7_4:-12949636 Msa1140700:CDS
CATCCAATCATCAAAATAAT+TGG 0.258777 7_4:+12946372 None:intergenic
TGGTCTAATTGCTGCACTTT+TGG 0.273816 7_4:-12946395 Msa1140700:CDS
CATGATTGCTATGGTGTTCT+TGG 0.277365 7_4:-12949528 Msa1140700:intron
TAATTGTGTGCAGGGAATTC+TGG 0.280150 7_4:-12946777 Msa1140700:intron
GCAGAGCGTGGTTTCCTTCC+CGG 0.286014 7_4:-12947543 Msa1140700:CDS
AATAGAAACCTTTGACATTC+CGG 0.314411 7_4:+12947524 None:intergenic
GCATGCACAAGCACATTCTT+AGG 0.345663 7_4:-12944441 Msa1140700:exon
TTGCAAGAGGCTCATGATAT+CGG 0.352519 7_4:-12944551 Msa1140700:CDS
CTCTGCTAAGGCATCCATTT+CGG 0.359363 7_4:+12947560 None:intergenic
AATCCGTATCAGTACCCTAT+TGG 0.365036 7_4:-12946931 Msa1140700:CDS
CTCAACAATTTCTCAGTACT+TGG 0.369775 7_4:+12944342 None:intergenic
TGAATACCAGGAGAGGGTTT+AGG 0.374643 7_4:+12949549 None:intergenic
TATGAGAAATAGAGTGAAAG+TGG 0.384074 7_4:+12944270 None:intergenic
ATAGAAACCTTTGACATTCC+GGG 0.389148 7_4:+12947525 None:intergenic
GGAACAAGAGCGCTGGGTTG+TGG 0.397367 7_4:-12946539 Msa1140700:CDS
TCCGAAAATATATATACTTT+CGG 0.402293 7_4:-12944168 Msa1140700:three_prime_UTR
TGCAAGAGGCTCATGATATC+GGG 0.405352 7_4:-12944550 Msa1140700:CDS
AAGAGAAAATGCAGTTAGGT+TGG 0.406621 7_4:+12949762 None:intergenic
GCTTGAAGGCTTTACCGAAA+TGG 0.410063 7_4:-12947574 Msa1140700:CDS
AGTGAAAGCTCTTCTTCGTT+AGG 0.410273 7_4:+12949657 None:intergenic
GCCTCTGTCATGGCGACCCT+AGG 0.414807 7_4:-12946749 Msa1140700:CDS
TGCATCCGCTTCTTTCCAAT+AGG 0.419106 7_4:+12946916 None:intergenic
TAAGACACATTGACACTGTT+CGG 0.424020 7_4:-12944637 Msa1140700:CDS
ATAGGGTACTGATACGGATT+TGG 0.428517 7_4:+12946934 None:intergenic
GCATCCGCTTCTTTCCAATA+GGG 0.430128 7_4:+12946917 None:intergenic
CAGCAGGTTGAAGTGCTTGA+AGG 0.440105 7_4:-12947588 Msa1140700:CDS
AAACATGATACTGAGACATT+AGG 0.441736 7_4:+12944216 None:intergenic
GATGTGATCACTAATGTGAT+TGG 0.442921 7_4:-12946415 Msa1140700:CDS
CTGATAATGGTGACCGGTCA+TGG 0.447887 7_4:-12949623 Msa1140700:CDS
ATCCACTTTAGACTCTCTTC+TGG 0.448253 7_4:-12947007 Msa1140700:CDS
TATTATGCTTTCAGTGACTT+TGG 0.454551 7_4:-12946515 Msa1140700:CDS
GAAAATGTGAATTCACTTGT+TGG 0.461809 7_4:-12944725 Msa1140700:CDS
GATGGCAAACGTCTCGCTCC+TGG 0.461933 7_4:+12947113 None:intergenic
ACAAAAGCACGCTCGATCTC+AGG 0.463499 7_4:+12944497 None:intergenic
GAAGAAGAGAAAATGCAGTT+AGG 0.465647 7_4:+12949758 None:intergenic
GAACAAGAGCGCTGGGTTGT+GGG 0.470812 7_4:-12946538 Msa1140700:CDS
AAGACACATTGACACTGTTC+GGG 0.476544 7_4:-12944636 Msa1140700:CDS
AGAAACTTACATACCTCTGC+TGG 0.477384 7_4:-12944676 Msa1140700:CDS
GAATGTGCTTGTGCATGCTC+AGG 0.480448 7_4:+12944446 None:intergenic
CCAAAATTATTTGCAGCCCT+AGG 0.489435 7_4:+12946732 None:intergenic
AATAAACTTCCTTGCATGAC+AGG 0.492423 7_4:+12944297 None:intergenic
TCTGACTGATGCATAAACTT+TGG 0.494540 7_4:+12947053 None:intergenic
GACTAGGGAACAAGAGCGCT+GGG 0.500550 7_4:-12946545 Msa1140700:CDS
GTCTAAAGTGGATGCAATGA+TGG 0.501643 7_4:+12947017 None:intergenic
AGGAGCGAGATAAGTTAGCC+AGG 0.501817 7_4:-12947131 Msa1140700:CDS
CCTGGTATTCATGATTGCTA+TGG 0.501871 7_4:-12949537 Msa1140700:CDS
CAAAATTATTTGCAGCCCTA+GGG 0.512102 7_4:+12946733 None:intergenic
GTAAGTTTCTGAAGATACTC+TGG 0.516377 7_4:+12944689 None:intergenic
CTTACAATGATAGCACCAAC+AGG 0.517600 7_4:+12946346 None:intergenic
AAGTGGATGCAATGATGGCT+AGG 0.517651 7_4:+12947022 None:intergenic
ATAATACCTTCAGCTTGACT+AGG 0.518093 7_4:-12946561 Msa1140700:CDS
TCTTGCAAAGGCATGTCTGC+TGG 0.522402 7_4:+12944566 None:intergenic
ACTGTTCGGGCATATACATT+CGG 0.522461 7_4:-12944623 Msa1140700:CDS
CGAAGTTCAACCGCCATGAC+CGG 0.524564 7_4:+12949610 None:intergenic
CGGCTCTCACTACTTTGTTG+AGG 0.525412 7_4:-12944603 Msa1140700:CDS
AAGGAAACCACGCTCTGCTA+AGG 0.531828 7_4:+12947548 None:intergenic
TTTCCAATAGGGTACTGATA+CGG 0.535905 7_4:+12946928 None:intergenic
CAGTTTCTGATAATGGTGAC+CGG 0.537897 7_4:-12949629 Msa1140700:CDS
TTTCCTTCCCGGAATGTCAA+AGG 0.540211 7_4:-12947532 Msa1140700:intron
CCATAGCAATCATGAATACC+AGG 0.540737 7_4:+12949537 None:intergenic
AATGAATAATGTGTAAAGTA+AGG 0.543966 7_4:+12949864 None:intergenic
AGCTATGTTCGATATTCTGA+TGG 0.545423 7_4:+12947095 None:intergenic
TACAGTGTATATTAGTGTGC+GGG 0.552886 7_4:+12946703 None:intergenic
CCTCTGTCATGGCGACCCTA+GGG 0.553847 7_4:-12946748 Msa1140700:CDS
GACCGGGAAAATGGTGGAGA+CGG 0.562054 7_4:-12949688 Msa1140700:CDS
TGCTGAGTACTATCAGCAGC+AGG 0.563087 7_4:-12947604 Msa1140700:CDS
AGCAGACATGCCTTTGCAAG+AGG 0.566228 7_4:-12944564 Msa1140700:CDS
GATTGTGAAGGCCTATGCTC+AGG 0.566596 7_4:-12946449 Msa1140700:CDS
CCTTGTGGTGGTTCCAGCAG+AGG 0.569864 7_4:+12944663 None:intergenic
ATACGGATTTGGTGTTTGCA+TGG 0.571306 7_4:+12946945 None:intergenic
AGTGGATGCAATGATGGCTA+GGG 0.572444 7_4:+12947023 None:intergenic
AAAGAAGCGGATGCAACCAT+TGG 0.577177 7_4:-12946908 Msa1140700:intron
ACCATAAGATAAATCCAGAA+AGG 0.578791 7_4:+12946980 None:intergenic
ATGATACTGAGACATTAGGT+AGG 0.578925 7_4:+12944220 None:intergenic
AAGACACCTAAACCCTCTCC+TGG 0.583118 7_4:-12949555 Msa1140700:CDS
TAATACCTTCAGCTTGACTA+GGG 0.583412 7_4:-12946560 Msa1140700:CDS
GATGATTGGATGGATCCTGT+TGG 0.588009 7_4:-12946361 Msa1140700:CDS
GTCCAGAAGAGAGTCTAAAG+TGG 0.592680 7_4:+12947005 None:intergenic
CCCTAGGGTCGCCATGACAG+AGG 0.598487 7_4:+12946748 None:intergenic
ATATCATGAGCCTCTTGCAA+AGG 0.600551 7_4:+12944554 None:intergenic
TGTAATGACCGGGAAAATGG+TGG 0.600947 7_4:-12949694 Msa1140700:exon
CGGGAAAATGGTGGAGACGG+TGG 0.602898 7_4:-12949685 Msa1140700:CDS
AAGCGCGTGGAGTGAACGTG+AGG 0.606622 7_4:+12949901 None:intergenic
GTTTATGCATCAGTCAGAAG+TGG 0.609513 7_4:-12947048 Msa1140700:CDS
CAATGTGTCTTACAGCCTTG+TGG 0.618083 7_4:+12944648 None:intergenic
CAATCATGAATACCAGGAGA+GGG 0.618839 7_4:+12949543 None:intergenic
CTTTGTACACAATTCGCACA+TGG 0.622183 7_4:-12944763 Msa1140700:CDS
GCAATCATGAATACCAGGAG+AGG 0.624776 7_4:+12949542 None:intergenic
CACATGGTCAATGACAGTGT+TGG 0.625243 7_4:-12944747 Msa1140700:CDS
TGATACTGAGACATTAGGTA+GGG 0.632284 7_4:+12944221 None:intergenic
ATGAGATGTATCAAAGCGCG+TGG 0.634968 7_4:+12949888 None:intergenic
AATATCGAACATAGCTAACA+TGG 0.635618 7_4:-12947088 Msa1140700:CDS
TGTGTCTTACAGCCTTGTGG+TGG 0.637411 7_4:+12944651 None:intergenic
ATAAGATAAATCCAGAAAGG+AGG 0.638365 7_4:+12946983 None:intergenic
TTGTTCCCTAGTCAAGCTGA+AGG 0.646037 7_4:+12946555 None:intergenic
CCTCTGCTGGAACCACCACA+AGG 0.649186 7_4:-12944663 Msa1140700:CDS
ATGGATGCCTTAGCAGAGCG+TGG 0.649962 7_4:-12947555 Msa1140700:CDS
AAACCTTTGACATTCCGGGA+AGG 0.650213 7_4:+12947529 None:intergenic
TTACAGTGTATATTAGTGTG+CGG 0.655284 7_4:+12946702 None:intergenic
CAATCTCATTAGTAAAAGAG+CGG 0.658060 7_4:+12946467 None:intergenic
AGTACCCTATTGGAAAGAAG+CGG 0.658390 7_4:-12946921 Msa1140700:CDS
AGCGCGTGGAGTGAACGTGA+GGG 0.672097 7_4:+12949902 None:intergenic
GCAAGAGGCTCATGATATCG+GGG 0.674449 7_4:-12944549 Msa1140700:CDS
GCTGTGAAGCCTGTCATGCA+AGG 0.678000 7_4:-12944306 Msa1140700:three_prime_UTR
ATAATGGTGACCGGTCATGG+CGG 0.812917 7_4:-12949620 Msa1140700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATGAAAAATAAATAAAA+AGG + chr7_4:12948607-12948626 None:intergenic 10.0%
!!! TTATTTATTTTTCATTGTTA+AGG - chr7_4:12948609-12948628 Msa1140700:intron 10.0%
!!! TATTTATTTTTCATTGTTAA+GGG - chr7_4:12948610-12948629 Msa1140700:intron 10.0%
!!! TCAAAGAACATTTTATAATA+TGG + chr7_4:12944700-12944719 None:intergenic 15.0%
!! ATTTAAATTTGAATGATCTT+TGG - chr7_4:12948077-12948096 Msa1140700:intron 15.0%
!!! ACCATTCAATTTTTTTTTAA+TGG - chr7_4:12948113-12948132 Msa1140700:intron 15.0%
!! ATTATTAAAGAAACAAAAAG+GGG + chr7_4:12948206-12948225 None:intergenic 15.0%
!! CATTATTAAAGAAACAAAAA+GGG + chr7_4:12948207-12948226 None:intergenic 15.0%
!!! CTTTTTGTTTCTTTAATAAT+GGG - chr7_4:12948206-12948225 Msa1140700:intron 15.0%
!! ATAGGATTAATTTACTAAAT+TGG - chr7_4:12948235-12948254 Msa1140700:intron 15.0%
!! AATGAATAATGTGTAAAGTA+AGG + chr7_4:12944184-12944203 None:intergenic 20.0%
!!! TTTAGGTTTTTTTTTTGAAC+AGG + chr7_4:12944227-12944246 None:intergenic 20.0%
!! AAACCTAAAAAAATCTTCTA+CGG - chr7_4:12944238-12944257 Msa1140700:three_prime_UTR 20.0%
!!! ATAATAGCAGAAATGATTTT+TGG - chr7_4:12945243-12945262 Msa1140700:intron 20.0%
!! TATTATTAACAGCTGTTATT+TGG + chr7_4:12945376-12945395 None:intergenic 20.0%
!!! TACAATTTGTTTTGTATCAA+TGG - chr7_4:12945630-12945649 Msa1140700:intron 20.0%
!! AACTTATTACACTTAAATCA+CGG + chr7_4:12946110-12946129 None:intergenic 20.0%
!! CAATTACCTATAAATTAATG+GGG + chr7_4:12947431-12947450 None:intergenic 20.0%
!! CCAATTACCTATAAATTAAT+GGG + chr7_4:12947432-12947451 None:intergenic 20.0%
!! ACCAATTACCTATAAATTAA+TGG + chr7_4:12947433-12947452 None:intergenic 20.0%
!! AAGTATTATAGATTCACATA+AGG + chr7_4:12947735-12947754 None:intergenic 20.0%
!! GATTTATAGCCTAATTAAAT+AGG - chr7_4:12947765-12947784 Msa1140700:intron 20.0%
!! ATTGACATTCCTATTTAATT+AGG + chr7_4:12947777-12947796 None:intergenic 20.0%
!! ATGATTCCTTTCTTATATAT+GGG - chr7_4:12947818-12947837 Msa1140700:intron 20.0%
!! AACTAAAATGTGTAGATATT+AGG + chr7_4:12947947-12947966 None:intergenic 20.0%
!! AAACATATTTCCTTATTCAT+TGG - chr7_4:12947990-12948009 Msa1140700:intron 20.0%
!! GTAAATAAATCCAATGAATA+AGG + chr7_4:12948003-12948022 None:intergenic 20.0%
!! GCCATTAAAAAAAAATTGAA+TGG + chr7_4:12948117-12948136 None:intergenic 20.0%
!! CCATTATTAAAGAAACAAAA+AGG + chr7_4:12948208-12948227 None:intergenic 20.0%
!!! CCTTTTTGTTTCTTTAATAA+TGG - chr7_4:12948205-12948224 Msa1140700:intron 20.0%
!! ATTCATCAATTGTTTATCAA+AGG + chr7_4:12948718-12948737 None:intergenic 20.0%
!! TCCGAAAATATATATACTTT+CGG - chr7_4:12949877-12949896 Msa1140700:five_prime_UTR 20.0%
!!! TCCGAAAGTATATATATTTT+CGG + chr7_4:12949881-12949900 None:intergenic 20.0%
!!! TTTTTTTGAACAGGAAAAGT+GGG + chr7_4:12944218-12944237 None:intergenic 25.0%
!!! TTTTTTTTGAACAGGAAAAG+TGG + chr7_4:12944219-12944238 None:intergenic 25.0%
! TTTATTAAGTGTTCTTGTCT+TGG - chr7_4:12944587-12944606 Msa1140700:CDS 25.0%
! ATGCAATTTCAAAGATTCTA+TGG + chr7_4:12944661-12944680 None:intergenic 25.0%
! AAAATGTTCTTTGATGTATC+TGG - chr7_4:12944706-12944725 Msa1140700:CDS 25.0%
! TTATTCACTTTGTACATGTT+TGG - chr7_4:12944923-12944942 Msa1140700:intron 25.0%
! CATTTCTGCTATTATTTGTA+GGG + chr7_4:12945238-12945257 None:intergenic 25.0%
! TCATTTCTGCTATTATTTGT+AGG + chr7_4:12945239-12945258 None:intergenic 25.0%
!! ACTAAGATGATGATGAAAAA+AGG - chr7_4:12945308-12945327 Msa1140700:intron 25.0%
! AACAGCTGTTAATAATAAAG+TGG - chr7_4:12945379-12945398 Msa1140700:intron 25.0%
! ACAGCTGTTAATAATAAAGT+GGG - chr7_4:12945380-12945399 Msa1140700:intron 25.0%
!! AAATTGGTCTCCAAAAATAT+CGG + chr7_4:12945485-12945504 None:intergenic 25.0%
!! CTGTTAGAATTTTACTGTTT+TGG - chr7_4:12945677-12945696 Msa1140700:intron 25.0%
! TGAATATATAAAGAGCCATA+AGG + chr7_4:12945729-12945748 None:intergenic 25.0%
!!! TGTTTTGTTGTTGAGAATTT+CGG - chr7_4:12945920-12945939 Msa1140700:intron 25.0%
!!! GTTTTTGATATATTTGAAGC+TGG - chr7_4:12945987-12946006 Msa1140700:intron 25.0%
!!! TTTTGCTTTATTTCTTGCTA+TGG - chr7_4:12946178-12946197 Msa1140700:intron 25.0%
!! ATATGCTTTCTAAGTTTGTT+TGG - chr7_4:12946331-12946350 Msa1140700:intron 25.0%
!!! GTTTTCTTTTCTGTTTTGTT+AGG - chr7_4:12946403-12946422 Msa1140700:CDS 25.0%
! TTTAGATCTAGAGAAGATAA+AGG + chr7_4:12946556-12946575 None:intergenic 25.0%
!! ATTAAGTTGTTTAGCTAAAG+AGG + chr7_4:12946589-12946608 None:intergenic 25.0%
! ATGTAATAAGATGTTTCCAT+AGG - chr7_4:12946778-12946797 Msa1140700:intron 25.0%
! CAAAACAGGATATTAATATG+AGG + chr7_4:12947168-12947187 None:intergenic 25.0%
! TAGTAGTTATGAATGTATCT+TGG - chr7_4:12947217-12947236 Msa1140700:intron 25.0%
!!! ATATACACTGTAAGTTGATT+TGG - chr7_4:12947353-12947372 Msa1140700:intron 25.0%
!! AACAGTTAATAGTAGTTTGT+TGG - chr7_4:12947404-12947423 Msa1140700:intron 25.0%
! CCCATTAATTTATAGGTAAT+TGG - chr7_4:12947429-12947448 Msa1140700:intron 25.0%
! TTTGTCTAAATGAAATTTCC+AGG - chr7_4:12947461-12947480 Msa1140700:intron 25.0%
!! TTTTACTAATGAGATTGTGA+AGG - chr7_4:12947584-12947603 Msa1140700:CDS 25.0%
! CATCCAATCATCAAAATAAT+TGG + chr7_4:12947676-12947695 None:intergenic 25.0%
!!! CAATTATTTTGATGATTGGA+TGG - chr7_4:12947674-12947693 Msa1140700:intron 25.0%
! TTAGGCTATAAATCAACATA+AGG + chr7_4:12947759-12947778 None:intergenic 25.0%
! CATATATAAGAAAGGAATCA+TGG + chr7_4:12947819-12947838 None:intergenic 25.0%
! CATGATTCCTTTCTTATATA+TGG - chr7_4:12947817-12947836 Msa1140700:intron 25.0%
! ATTCTACCCATATATAAGAA+AGG + chr7_4:12947827-12947846 None:intergenic 25.0%
! TTCTTATATATGGGTAGAAT+TGG - chr7_4:12947827-12947846 Msa1140700:intron 25.0%
! TCTTATATATGGGTAGAATT+GGG - chr7_4:12947828-12947847 Msa1140700:intron 25.0%
! CTATATTGAACCAAATATTC+AGG + chr7_4:12948169-12948188 None:intergenic 25.0%
!! CTGAATATTTGGTTCAATAT+AGG - chr7_4:12948167-12948186 Msa1140700:intron 25.0%
!! TTTGTTTCTTTAATAATGGG+AGG - chr7_4:12948209-12948228 Msa1140700:intron 25.0%
!! TTGTTTCTTTAATAATGGGA+GGG - chr7_4:12948210-12948229 Msa1140700:intron 25.0%
! GGATTAATTTACTAAATTGG+TGG - chr7_4:12948238-12948257 Msa1140700:intron 25.0%
! TGAACTTCTTAATGTCAATT+AGG - chr7_4:12948383-12948402 Msa1140700:intron 25.0%
! AATATTAGAGGGATTTGAAA+TGG + chr7_4:12948445-12948464 None:intergenic 25.0%
!! TCTTGGTTTAGTTCAAAAAT+TGG + chr7_4:12948524-12948543 None:intergenic 25.0%
!!! AAAAGGAACATTGATTTACT+TGG + chr7_4:12948590-12948609 None:intergenic 25.0%
!!! TAGAAAGTGTTATCAAATAG+CGG - chr7_4:12949073-12949092 Msa1140700:intron 25.0%
! GATATGTAACAACTATAAGA+TGG + chr7_4:12949214-12949233 None:intergenic 25.0%
! AGAATTACACGTAAGTAAAA+GGG + chr7_4:12949248-12949267 None:intergenic 25.0%
! AAGAATTACACGTAAGTAAA+AGG + chr7_4:12949249-12949268 None:intergenic 25.0%
!! TTTCGGATAAATTTTCATCT+TGG - chr7_4:12949894-12949913 Msa1140700:five_prime_UTR 25.0%
!!! GTTCCGTAGAAGATTTTTTT+AGG + chr7_4:12944244-12944263 None:intergenic 30.0%
!! TGGTTTTTGTTATAGTAACG+AGG + chr7_4:12944266-12944285 None:intergenic 30.0%
CTTCTTTCAGTTTCTGATAA+TGG - chr7_4:12944409-12944428 Msa1140700:three_prime_UTR 30.0%
! TGTTTTCTCAACTTAGTTAC+CGG - chr7_4:12944851-12944870 Msa1140700:intron 30.0%
TATAGCACATACACAAACAT+TGG + chr7_4:12944885-12944904 None:intergenic 30.0%
!! TTGTGAGTTTGTTGAAATCA+AGG - chr7_4:12944951-12944970 Msa1140700:intron 30.0%
TTAGCTTCTTAGCAAAAAGT+TGG + chr7_4:12945084-12945103 None:intergenic 30.0%
! CTAAATTAGCTCTCTCAAAT+TGG - chr7_4:12945100-12945119 Msa1140700:intron 30.0%
!!! CACTAGTTCGCTATTTTTTA+CGG - chr7_4:12945331-12945350 Msa1140700:intron 30.0%
! TGTTATTTGGACATAAGAAC+TGG + chr7_4:12945363-12945382 None:intergenic 30.0%
CAGCTGTTAATAATAAAGTG+GGG - chr7_4:12945381-12945400 Msa1140700:intron 30.0%
AGCTGTTAATAATAAAGTGG+GGG - chr7_4:12945382-12945401 Msa1140700:intron 30.0%
! TTGATCTGTTCCGATATTTT+TGG - chr7_4:12945472-12945491 Msa1140700:intron 30.0%
!!! GATATTTTTGGAGACCAATT+TGG - chr7_4:12945484-12945503 Msa1140700:intron 30.0%
ACCAATTTGGATATTTACTC+AGG - chr7_4:12945497-12945516 Msa1140700:intron 30.0%
CCAATTTGGATATTTACTCA+GGG - chr7_4:12945498-12945517 Msa1140700:intron 30.0%
!! TAGAACTTGTTTCAGTTTTC+TGG - chr7_4:12945783-12945802 Msa1140700:intron 30.0%
GTTTAACAAATATCGGGATT+TGG - chr7_4:12945876-12945895 Msa1140700:intron 30.0%
! TTGTTGAGAATTTCGGTTTT+TGG - chr7_4:12945927-12945946 Msa1140700:intron 30.0%
! TGTTGAGAATTTCGGTTTTT+GGG - chr7_4:12945928-12945947 Msa1140700:intron 30.0%
! TTGAAGCTGGATTTAAGTTA+AGG - chr7_4:12946000-12946019 Msa1140700:intron 30.0%
! TGAAGCTGGATTTAAGTTAA+GGG - chr7_4:12946001-12946020 Msa1140700:intron 30.0%
CATATGCTTTCTAAGTTGTT+TGG - chr7_4:12946228-12946247 Msa1140700:intron 30.0%
!! ATGTGCTTTATTTCTTGCTA+TGG - chr7_4:12946280-12946299 Msa1140700:intron 30.0%
AATAGAAACCTTTGACATTC+CGG + chr7_4:12946524-12946543 None:intergenic 30.0%
GTTTAGCTAAAGAGGATTAT+TGG + chr7_4:12946581-12946600 None:intergenic 30.0%
! GATGTTTTCTTACGAAATCA+TGG - chr7_4:12946713-12946732 Msa1140700:CDS 30.0%
GCTTATTTGAACTTATGATC+TGG + chr7_4:12946834-12946853 None:intergenic 30.0%
AATATCGAACATAGCTAACA+TGG - chr7_4:12946957-12946976 Msa1140700:CDS 30.0%
ATAAGATAAATCCAGAAAGG+AGG + chr7_4:12947065-12947084 None:intergenic 30.0%
TCCTTTCTGGATTTATCTTA+TGG - chr7_4:12947064-12947083 Msa1140700:CDS 30.0%
ACCATAAGATAAATCCAGAA+AGG + chr7_4:12947068-12947087 None:intergenic 30.0%
AAAATTGTGTAATTGTGTGC+AGG - chr7_4:12947259-12947278 Msa1140700:intron 30.0%
AAATTGTGTAATTGTGTGCA+GGG - chr7_4:12947260-12947279 Msa1140700:intron 30.0%
TTACAGTGTATATTAGTGTG+CGG + chr7_4:12947346-12947365 None:intergenic 30.0%
TATTATGCTTTCAGTGACTT+TGG - chr7_4:12947530-12947549 Msa1140700:intron 30.0%
CAATCTCATTAGTAAAAGAG+CGG + chr7_4:12947581-12947600 None:intergenic 30.0%
!!! TGGCCAATTATTTTGATGAT+TGG - chr7_4:12947670-12947689 Msa1140700:intron 30.0%
TAGTAACTCACTAAAATGTG+TGG - chr7_4:12947861-12947880 Msa1140700:intron 30.0%
AGTAACTCACTAAAATGTGT+GGG - chr7_4:12947862-12947881 Msa1140700:intron 30.0%
CATTCAAATACAGCAGAAAA+AGG + chr7_4:12948025-12948044 None:intergenic 30.0%
! TTTTCTGCTGTATTTGAATG+TGG - chr7_4:12948025-12948044 Msa1140700:intron 30.0%
TTGTACTTTGCCTGAATATT+TGG - chr7_4:12948156-12948175 Msa1140700:intron 30.0%
! TTTAATAATGGGAGGGAAAT+AGG - chr7_4:12948217-12948236 Msa1140700:intron 30.0%
TTTACTAAATTGGTGGAAAG+TGG - chr7_4:12948245-12948264 Msa1140700:intron 30.0%
AAATCCCTCTAATATTGAAC+AGG - chr7_4:12948449-12948468 Msa1140700:intron 30.0%
AATCCCTCTAATATTGAACA+GGG - chr7_4:12948450-12948469 Msa1140700:intron 30.0%
! GTTTAGTTCAAAAATTGGAG+GGG + chr7_4:12948519-12948538 None:intergenic 30.0%
! GGTTTAGTTCAAAAATTGGA+GGG + chr7_4:12948520-12948539 None:intergenic 30.0%
! TGGTTTAGTTCAAAAATTGG+AGG + chr7_4:12948521-12948540 None:intergenic 30.0%
TGTTTGATTGAGGAAAATGA+AGG + chr7_4:12948567-12948586 None:intergenic 30.0%
!! ATTTACTTGGTGTTTGATTG+AGG + chr7_4:12948577-12948596 None:intergenic 30.0%
CAAATATATCCTTTCCAAGT+AGG + chr7_4:12948679-12948698 None:intergenic 30.0%
ATATTTGTCTGCTATCAGTT+TGG - chr7_4:12948692-12948711 Msa1140700:intron 30.0%
ATGAATGAGATTCATTCCTT+GGG - chr7_4:12948732-12948751 Msa1140700:intron 30.0%
ATTTCCAGTAATCTCATTCA+TGG - chr7_4:12948787-12948806 Msa1140700:intron 30.0%
AAGAAGAAATCTCTCATTAC+AGG - chr7_4:12948897-12948916 Msa1140700:intron 30.0%
ATGTAACAACTATAAGATGG+CGG + chr7_4:12949211-12949230 None:intergenic 30.0%
GAATTACACGTAAGTAAAAG+GGG + chr7_4:12949247-12949266 None:intergenic 30.0%
GAAAATGTGAATTCACTTGT+TGG - chr7_4:12949320-12949339 Msa1140700:intron 30.0%
TATGAGAAATAGAGTGAAAG+TGG + chr7_4:12949778-12949797 None:intergenic 30.0%
AAACATGATACTGAGACATT+AGG + chr7_4:12949832-12949851 None:intergenic 30.0%
AAGAGAAAATGCAGTTAGGT+TGG + chr7_4:12944286-12944305 None:intergenic 35.0%
GAAGAAGAGAAAATGCAGTT+AGG + chr7_4:12944290-12944309 None:intergenic 35.0%
! TTTTGTAATGACCGGGAAAA+TGG - chr7_4:12944348-12944367 Msa1140700:three_prime_UTR 35.0%
! ACAGACACATTGATTGCATT+TGG - chr7_4:12944822-12944841 Msa1140700:intron 35.0%
CCCTGAGTAAATATCCAAAT+TGG + chr7_4:12945501-12945520 None:intergenic 35.0%
!! TTGTTTTGTATCAATGGCTG+TGG - chr7_4:12945636-12945655 Msa1140700:intron 35.0%
! AGTTCCTTGTGTTTTCCTTA+TGG - chr7_4:12945711-12945730 Msa1140700:intron 35.0%
TTTGTTAAACCTGGACGAAA+AGG + chr7_4:12945866-12945885 None:intergenic 35.0%
CGTCCAGGTTTAACAAATAT+CGG - chr7_4:12945869-12945888 Msa1140700:intron 35.0%
GTCCAGGTTTAACAAATATC+GGG - chr7_4:12945870-12945889 Msa1140700:intron 35.0%
! ATCCCGATATTTGTTAAACC+TGG + chr7_4:12945875-12945894 None:intergenic 35.0%
GGAAGTTGTGTAGATACAAA+AGG - chr7_4:12945897-12945916 Msa1140700:intron 35.0%
! TTTCTTGCTATGGAGTTGTT+TGG - chr7_4:12946188-12946207 Msa1140700:intron 35.0%
! GTTTGGACTCTGCTATTTAA+CGG - chr7_4:12946245-12946264 Msa1140700:intron 35.0%
! TTTCTTGCTATGGAGTTGTT+TGG - chr7_4:12946188-12946207 Msa1140700:intron 35.0%
! GTTTGGACTCTGCTATTTAA+CGG - chr7_4:12946245-12946264 Msa1140700:intron 35.0%
ATAGAAACCTTTGACATTCC+GGG + chr7_4:12946523-12946542 None:intergenic 35.0%
AGTAAGCTGCAAATAGCTTA+TGG - chr7_4:12946748-12946767 Msa1140700:CDS 35.0%
TTTGACTCTATAGTCTCGTT+TGG + chr7_4:12946861-12946880 None:intergenic 35.0%
AGCTATGTTCGATATTCTGA+TGG + chr7_4:12946953-12946972 None:intergenic 35.0%
TCTGACTGATGCATAAACTT+TGG + chr7_4:12946995-12947014 None:intergenic 35.0%
!! TTTCCAATAGGGTACTGATA+CGG + chr7_4:12947120-12947139 None:intergenic 35.0%
TTAATATGAGGACTGACCAA+TGG + chr7_4:12947156-12947175 None:intergenic 35.0%
GATTCAGAAAACGTCAAAAC+AGG + chr7_4:12947182-12947201 None:intergenic 35.0%
CAAAATTATTTGCAGCCCTA+GGG + chr7_4:12947315-12947334 None:intergenic 35.0%
TACAGTGTATATTAGTGTGC+GGG + chr7_4:12947345-12947364 None:intergenic 35.0%
! TGATTTGGCTATATTTCCTG+AGG - chr7_4:12947368-12947387 Msa1140700:intron 35.0%
GTTGGACCCCATTAATTTAT+AGG - chr7_4:12947422-12947441 Msa1140700:intron 35.0%
ATAATACCTTCAGCTTGACT+AGG - chr7_4:12947484-12947503 Msa1140700:intron 35.0%
TAATACCTTCAGCTTGACTA+GGG - chr7_4:12947485-12947504 Msa1140700:intron 35.0%
AAAAAAGTGATCCTGAGCAT+AGG + chr7_4:12947610-12947629 None:intergenic 35.0%
GATGTGATCACTAATGTGAT+TGG - chr7_4:12947630-12947649 Msa1140700:intron 35.0%
TCACTAAAATGTGTGGGTAT+GGG - chr7_4:12947868-12947887 Msa1140700:intron 35.0%
AATATAGTGTGTCCAGAATG+TGG + chr7_4:12947913-12947932 None:intergenic 35.0%
ATTGAGGAAAATGAAGGAGA+GGG + chr7_4:12948561-12948580 None:intergenic 35.0%
TACAAGGATAGAGTCTCATA+AGG + chr7_4:12948653-12948672 None:intergenic 35.0%
CTATCCTTGTAATACCTACT+TGG - chr7_4:12948662-12948681 Msa1140700:intron 35.0%
CTTTCCAAGTAGGTATTACA+AGG + chr7_4:12948669-12948688 None:intergenic 35.0%
CTTGTAATACCTACTTGGAA+AGG - chr7_4:12948667-12948686 Msa1140700:intron 35.0%
GATGAATGAGATTCATTCCT+TGG - chr7_4:12948731-12948750 Msa1140700:intron 35.0%
TATGATGCACAAAGTTTGAG+AGG + chr7_4:12948974-12948993 None:intergenic 35.0%
! GTAAGTTTCTGAAGATACTC+TGG + chr7_4:12949359-12949378 None:intergenic 35.0%
TAAGACACATTGACACTGTT+CGG - chr7_4:12949408-12949427 Msa1140700:intron 35.0%
CTCAACAATTTCTCAGTACT+TGG + chr7_4:12949706-12949725 None:intergenic 35.0%
AATAAACTTCCTTGCATGAC+AGG + chr7_4:12949751-12949770 None:intergenic 35.0%
TGATACTGAGACATTAGGTA+GGG + chr7_4:12949827-12949846 None:intergenic 35.0%
ATGATACTGAGACATTAGGT+AGG + chr7_4:12949828-12949847 None:intergenic 35.0%
! GACGACGTTTTTGTAATGAC+CGG - chr7_4:12944340-12944359 Msa1140700:three_prime_UTR 40.0%
! ACGACGTTTTTGTAATGACC+GGG - chr7_4:12944341-12944360 Msa1140700:three_prime_UTR 40.0%
AGTGAAAGCTCTTCTTCGTT+AGG + chr7_4:12944391-12944410 None:intergenic 40.0%
!! CAGTTTCTGATAATGGTGAC+CGG - chr7_4:12944416-12944435 Msa1140700:three_prime_UTR 40.0%
CAATCATGAATACCAGGAGA+GGG + chr7_4:12944505-12944524 None:intergenic 40.0%
CCATAGCAATCATGAATACC+AGG + chr7_4:12944511-12944530 None:intergenic 40.0%
CCTGGTATTCATGATTGCTA+TGG - chr7_4:12944508-12944527 Msa1140700:CDS 40.0%
CATGATTGCTATGGTGTTCT+TGG - chr7_4:12944517-12944536 Msa1140700:CDS 40.0%
ATGCAATCAATGTGTCTGTG+TGG + chr7_4:12944821-12944840 None:intergenic 40.0%
ACAAACATTGGACACAACAC+CGG + chr7_4:12944873-12944892 None:intergenic 40.0%
GGAGCACAATGTCATTAAGT+GGG + chr7_4:12945217-12945236 None:intergenic 40.0%
AATGGCTGTGGTTGATTATG+AGG - chr7_4:12945648-12945667 Msa1140700:intron 40.0%
AGAGCCATAAGGAAAACACA+AGG + chr7_4:12945718-12945737 None:intergenic 40.0%
! TTTCTGGAAGATGCTATCGA+TGG - chr7_4:12945799-12945818 Msa1140700:intron 40.0%
!!! CGGTTTTTGGGTAGATATCT+TGG - chr7_4:12945940-12945959 Msa1140700:intron 40.0%
TAGTCTGAAAGTTTCGCATC+TGG + chr7_4:12946051-12946070 None:intergenic 40.0%
GATGCGAAACTTTCAGACTA+TGG - chr7_4:12946051-12946070 Msa1140700:intron 40.0%
! GACTCTGCTATTTAACGGAA+AGG - chr7_4:12946250-12946269 Msa1140700:intron 40.0%
! GACTCTGCTATTTAACGGAA+AGG - chr7_4:12946250-12946269 Msa1140700:intron 40.0%
CTCTATAGTCTCGTTTGGAT+TGG + chr7_4:12946856-12946875 None:intergenic 40.0%
GACTATAGAGTCAAATGCCT+TGG - chr7_4:12946866-12946885 Msa1140700:intron 40.0%
GAGTATCCACAATTGTATGC+AGG - chr7_4:12946891-12946910 Msa1140700:intron 40.0%
TATCCACAATTGTATGCAGG+AGG - chr7_4:12946894-12946913 Msa1140700:intron 40.0%
GTTTATGCATCAGTCAGAAG+TGG - chr7_4:12946997-12947016 Msa1140700:CDS 40.0%
! GTCTAAAGTGGATGCAATGA+TGG + chr7_4:12947031-12947050 None:intergenic 40.0%
ATCCACTTTAGACTCTCTTC+TGG - chr7_4:12947038-12947057 Msa1140700:CDS 40.0%
!! ATACGGATTTGGTGTTTGCA+TGG + chr7_4:12947103-12947122 None:intergenic 40.0%
!! ATAGGGTACTGATACGGATT+TGG + chr7_4:12947114-12947133 None:intergenic 40.0%
AATCCGTATCAGTACCCTAT+TGG - chr7_4:12947114-12947133 Msa1140700:CDS 40.0%
AGTACCCTATTGGAAAGAAG+CGG - chr7_4:12947124-12947143 Msa1140700:CDS 40.0%
TAATTGTGTGCAGGGAATTC+TGG - chr7_4:12947268-12947287 Msa1140700:intron 40.0%
CCAAAATTATTTGCAGCCCT+AGG + chr7_4:12947316-12947335 None:intergenic 40.0%
! CCTAGGGCTGCAAATAATTT+TGG - chr7_4:12947313-12947332 Msa1140700:intron 40.0%
GTTTGTATCAACTTTGCCTC+AGG + chr7_4:12947387-12947406 None:intergenic 40.0%
!! TCAAGCTGAAGGTATTATCC+TGG + chr7_4:12947482-12947501 None:intergenic 40.0%
! TGGTCTAATTGCTGCACTTT+TGG - chr7_4:12947650-12947669 Msa1140700:intron 40.0%
CTTACAATGATAGCACCAAC+AGG + chr7_4:12947702-12947721 None:intergenic 40.0%
ATATGGGTAGAATTGGGTAC+AGG - chr7_4:12947834-12947853 Msa1140700:intron 40.0%
CTCACTAAAATGTGTGGGTA+TGG - chr7_4:12947867-12947886 Msa1140700:intron 40.0%
CTAAATTGGTGGAAAGTGGT+TGG - chr7_4:12948249-12948268 Msa1140700:intron 40.0%
TGGCCCTGTTCAATATTAGA+GGG + chr7_4:12948456-12948475 None:intergenic 40.0%
TTGGCCCTGTTCAATATTAG+AGG + chr7_4:12948457-12948476 None:intergenic 40.0%
! AATCCCTCCTCTCTCAATTT+TGG + chr7_4:12948476-12948495 None:intergenic 40.0%
GTTCAAAAATTGGAGGGGAA+GGG + chr7_4:12948514-12948533 None:intergenic 40.0%
AGTTCAAAAATTGGAGGGGA+AGG + chr7_4:12948515-12948534 None:intergenic 40.0%
AAATGAAGGAGAGGGAAAGA+TGG + chr7_4:12948553-12948572 None:intergenic 40.0%
GATTGAGGAAAATGAAGGAG+AGG + chr7_4:12948562-12948581 None:intergenic 40.0%
GATTCATTCCTTGGGATAGA+TGG - chr7_4:12948740-12948759 Msa1140700:intron 40.0%
ATTCATTGCCATCTATCCCA+AGG + chr7_4:12948751-12948770 None:intergenic 40.0%
TCGACCATGAATGAGATTAC+TGG + chr7_4:12948794-12948813 None:intergenic 40.0%
CGCAGAAGCTGAAACAATTA+TGG + chr7_4:12948837-12948856 None:intergenic 40.0%
ATGCAGTGTTGTCAAATAGC+AGG - chr7_4:12948993-12949012 Msa1140700:intron 40.0%
TTACACGTAAGTAAAAGGGG+TGG + chr7_4:12949244-12949263 None:intergenic 40.0%
CTTTGTACACAATTCGCACA+TGG - chr7_4:12949282-12949301 Msa1140700:intron 40.0%
AGAAACTTACATACCTCTGC+TGG - chr7_4:12949369-12949388 Msa1140700:intron 40.0%
AAGACACATTGACACTGTTC+GGG - chr7_4:12949409-12949428 Msa1140700:intron 40.0%
ACTGTTCGGGCATATACATT+CGG - chr7_4:12949422-12949441 Msa1140700:intron 40.0%
ATATCATGAGCCTCTTGCAA+AGG + chr7_4:12949494-12949513 None:intergenic 40.0%
TTGCAAGAGGCTCATGATAT+CGG - chr7_4:12949494-12949513 Msa1140700:intron 40.0%
ATGAGATGTATCAAAGCGCG+TGG + chr7_4:12944160-12944179 None:intergenic 45.0%
TGTAATGACCGGGAAAATGG+TGG - chr7_4:12944351-12944370 Msa1140700:three_prime_UTR 45.0%
TGAATACCAGGAGAGGGTTT+AGG + chr7_4:12944499-12944518 None:intergenic 45.0%
GCAATCATGAATACCAGGAG+AGG + chr7_4:12944506-12944525 None:intergenic 45.0%
TCAATGTGTCTGTGTGGTGT+CGG + chr7_4:12944815-12944834 None:intergenic 45.0%
TAGCTCTCTCAAATTGGCAC+CGG - chr7_4:12945106-12945125 Msa1140700:intron 45.0%
TTGGAGTATGCTCCTTCTCA+AGG + chr7_4:12945150-12945169 None:intergenic 45.0%
! TTGAGAAGGAGCATACTCCA+AGG - chr7_4:12945149-12945168 Msa1140700:intron 45.0%
AACACTTGGCCAACCCAAAT+GGG - chr7_4:12945181-12945200 Msa1140700:intron 45.0%
! GGGAGCACAATGTCATTAAG+TGG + chr7_4:12945218-12945237 None:intergenic 45.0%
!! TCTAGTTCACCTTTTCGTCC+AGG - chr7_4:12945854-12945873 Msa1140700:intron 45.0%
GCTTGAAGGCTTTACCGAAA+TGG - chr7_4:12946471-12946490 Msa1140700:CDS 45.0%
! CTCTGCTAAGGCATCCATTT+CGG + chr7_4:12946488-12946507 None:intergenic 45.0%
TTTCCTTCCCGGAATGTCAA+AGG - chr7_4:12946513-12946532 Msa1140700:CDS 45.0%
AAACCTTTGACATTCCGGGA+AGG + chr7_4:12946519-12946538 None:intergenic 45.0%
TTTCCATAGGCTCCCTCAAA+CGG - chr7_4:12946791-12946810 Msa1140700:intron 45.0%
GCACTTGTGAAACCGTTTGA+GGG + chr7_4:12946806-12946825 None:intergenic 45.0%
AGCACTTGTGAAACCGTTTG+AGG + chr7_4:12946807-12946826 None:intergenic 45.0%
CAATTGTGGATACTCAGCCA+AGG + chr7_4:12946886-12946905 None:intergenic 45.0%
AGTGGATGCAATGATGGCTA+GGG + chr7_4:12947025-12947044 None:intergenic 45.0%
AAGTGGATGCAATGATGGCT+AGG + chr7_4:12947026-12947045 None:intergenic 45.0%
GTCCAGAAGAGAGTCTAAAG+TGG + chr7_4:12947043-12947062 None:intergenic 45.0%
GCATCCGCTTCTTTCCAATA+GGG + chr7_4:12947131-12947150 None:intergenic 45.0%
TGCATCCGCTTCTTTCCAAT+AGG + chr7_4:12947132-12947151 None:intergenic 45.0%
AAAGAAGCGGATGCAACCAT+TGG - chr7_4:12947137-12947156 Msa1140700:intron 45.0%
!!! TCTGGTTTTTGCCTCTGTCA+TGG - chr7_4:12947286-12947305 Msa1140700:intron 45.0%
TTGTTCCCTAGTCAAGCTGA+AGG + chr7_4:12947493-12947512 None:intergenic 45.0%
GATGATTGGATGGATCCTGT+TGG - chr7_4:12947684-12947703 Msa1140700:intron 45.0%
AACAGGGCCAAAATTGAGAG+AGG - chr7_4:12948466-12948485 Msa1140700:intron 45.0%
!! GGGAAAGATGGAAAGTGTCT+TGG + chr7_4:12948541-12948560 None:intergenic 45.0%
TGGTCGACAACTGTAGTTAC+TGG - chr7_4:12948807-12948826 Msa1140700:intron 45.0%
TCAGTGCTCAAAAGAGCCAA+TGG + chr7_4:12949151-12949170 None:intergenic 45.0%
TGTAATTCTTCCACTGCAGC+TGG - chr7_4:12949259-12949278 Msa1140700:intron 45.0%
CACATGGTCAATGACAGTGT+TGG - chr7_4:12949298-12949317 Msa1140700:intron 45.0%
CAATGTGTCTTACAGCCTTG+TGG + chr7_4:12949400-12949419 None:intergenic 45.0%
TGCAAGAGGCTCATGATATC+GGG - chr7_4:12949495-12949514 Msa1140700:intron 45.0%
GCATGCACAAGCACATTCTT+AGG - chr7_4:12949604-12949623 Msa1140700:CDS 45.0%
!!! TTTAATTTCAAATTTATTTA+CGG - chr7_4:12945053-12945072 Msa1140700:intron 5.0%
!! AAATAAAATAAAATAAAAAG+AGG + chr7_4:12945532-12945551 None:intergenic 5.0%
!! CTGATAATGGTGACCGGTCA+TGG - chr7_4:12944422-12944441 Msa1140700:three_prime_UTR 50.0%
ATAATGGTGACCGGTCATGG+CGG - chr7_4:12944425-12944444 Msa1140700:exon 50.0%
AAGACACCTAAACCCTCTCC+TGG - chr7_4:12944490-12944509 Msa1140700:CDS 50.0%
! GCACTGACACTTCTGATCGA+AGG - chr7_4:12944756-12944775 Msa1140700:CDS 50.0%
AGCTCTCTCAAATTGGCACC+GGG - chr7_4:12945107-12945126 Msa1140700:intron 50.0%
TCGAACCTGAGACCTTGAGA+AGG - chr7_4:12945135-12945154 Msa1140700:intron 50.0%
ATGCTCCTTCTCAAGGTCTC+AGG + chr7_4:12945143-12945162 None:intergenic 50.0%
!! CATTTGGGTTGGCCAAGTGT+TGG + chr7_4:12945182-12945201 None:intergenic 50.0%
CAACACTTGGCCAACCCAAA+TGG - chr7_4:12945180-12945199 Msa1140700:intron 50.0%
ACGTCTGAACCCATTTGGGT+TGG + chr7_4:12945193-12945212 None:intergenic 50.0%
GGGTACGTCTGAACCCATTT+GGG + chr7_4:12945197-12945216 None:intergenic 50.0%
TGGGTACGTCTGAACCCATT+TGG + chr7_4:12945198-12945217 None:intergenic 50.0%
TGCTGAGTACTATCAGCAGC+AGG - chr7_4:12946441-12946460 Msa1140700:CDS 50.0%
! CAGCAGGTTGAAGTGCTTGA+AGG - chr7_4:12946457-12946476 Msa1140700:CDS 50.0%
AAGGAAACCACGCTCTGCTA+AGG + chr7_4:12946500-12946519 None:intergenic 50.0%
AAACCGTTTGAGGGAGCCTA+TGG + chr7_4:12946797-12946816 None:intergenic 50.0%
GCTCCTCCTGCATACAATTG+TGG + chr7_4:12946900-12946919 None:intergenic 50.0%
AGGAGCGAGATAAGTTAGCC+AGG - chr7_4:12946914-12946933 Msa1140700:CDS 50.0%
TCTCTTCTGGACCTCCTTTC+TGG - chr7_4:12947051-12947070 Msa1140700:CDS 50.0%
GATTGTGAAGGCCTATGCTC+AGG - chr7_4:12947596-12947615 Msa1140700:CDS 50.0%
GTATCCACTGTGCCACATTC+TGG - chr7_4:12947898-12947917 Msa1140700:intron 50.0%
! TGGTGGAAAGTGGTTGGTGT+TGG - chr7_4:12948255-12948274 Msa1140700:intron 50.0%
!! GTTGGTGTTGGCAGTGTTGA+AGG - chr7_4:12948267-12948286 Msa1140700:intron 50.0%
! TGTGTGTGTGGTGGTAGTGA+TGG - chr7_4:12948294-12948313 Msa1140700:intron 50.0%
! TGTGTGGTGGTAGTGATGGA+GGG - chr7_4:12948298-12948317 Msa1140700:intron 50.0%
! GTAGTGATGGAGGGTTCCTT+TGG - chr7_4:12948307-12948326 Msa1140700:intron 50.0%
GATGGAGGGTTCCTTTGGTA+TGG - chr7_4:12948312-12948331 Msa1140700:intron 50.0%
GGTTCCTTTGGTATGGAGGT+AGG - chr7_4:12948319-12948338 Msa1140700:intron 50.0%
CTCTCCTACCTCCATACCAA+AGG + chr7_4:12948326-12948345 None:intergenic 50.0%
CTTTGGTATGGAGGTAGGAG+AGG - chr7_4:12948324-12948343 Msa1140700:intron 50.0%
AGGGCCAAAATTGAGAGAGG+AGG - chr7_4:12948469-12948488 Msa1140700:intron 50.0%
GGGCCAAAATTGAGAGAGGA+GGG - chr7_4:12948470-12948489 Msa1140700:intron 50.0%
ATAGCAGCGCTTTAGCGCTA+CGG - chr7_4:12949017-12949036 Msa1140700:intron 50.0%
GCTTTAGCGCTACGGCATAA+CGG - chr7_4:12949025-12949044 Msa1140700:intron 50.0%
! TGTGTCTTACAGCCTTGTGG+TGG + chr7_4:12949397-12949416 None:intergenic 50.0%
CGGCTCTCACTACTTTGTTG+AGG - chr7_4:12949442-12949461 Msa1140700:intron 50.0%
! TCTTGCAAAGGCATGTCTGC+TGG + chr7_4:12949482-12949501 None:intergenic 50.0%
AGCAGACATGCCTTTGCAAG+AGG - chr7_4:12949481-12949500 Msa1140700:intron 50.0%
GCAAGAGGCTCATGATATCG+GGG - chr7_4:12949496-12949515 Msa1140700:intron 50.0%
! ACAAAAGCACGCTCGATCTC+AGG + chr7_4:12949551-12949570 None:intergenic 50.0%
GAATGTGCTTGTGCATGCTC+AGG + chr7_4:12949602-12949621 None:intergenic 50.0%
! GACCGGGAAAATGGTGGAGA+CGG - chr7_4:12944357-12944376 Msa1140700:three_prime_UTR 55.0%
! CACCGTCTCCACCATTTTCC+CGG + chr7_4:12944362-12944381 None:intergenic 55.0%
CGAAGTTCAACCGCCATGAC+CGG + chr7_4:12944438-12944457 None:intergenic 55.0%
GCTCTCTCAAATTGGCACCG+GGG - chr7_4:12945108-12945127 Msa1140700:intron 55.0%
GTCTCAGGTTCGATTCTCCC+CGG + chr7_4:12945128-12945147 None:intergenic 55.0%
!! CAAGTGTTGGCGTGAGACCT+TGG + chr7_4:12945169-12945188 None:intergenic 55.0%
CAAGGTCTCACGCCAACACT+TGG - chr7_4:12945167-12945186 Msa1140700:intron 55.0%
ATGGATGCCTTAGCAGAGCG+TGG - chr7_4:12946490-12946509 Msa1140700:CDS 55.0%
! TGACTAGGGAACAAGAGCGC+TGG - chr7_4:12947499-12947518 Msa1140700:intron 55.0%
!! GACTAGGGAACAAGAGCGCT+GGG - chr7_4:12947500-12947519 Msa1140700:intron 55.0%
!! GAACAAGAGCGCTGGGTTGT+GGG - chr7_4:12947507-12947526 Msa1140700:intron 55.0%
GTGTCCAGAATGTGGCACAG+TGG + chr7_4:12947905-12947924 None:intergenic 55.0%
! GTGTTGGCAGTGTTGAAGGC+TGG - chr7_4:12948271-12948290 Msa1140700:intron 55.0%
GTTGAAGGCTGGTGTGTGTG+TGG - chr7_4:12948282-12948301 Msa1140700:intron 55.0%
! GTGTGTGGTGGTAGTGATGG+AGG - chr7_4:12948297-12948316 Msa1140700:intron 55.0%
GGAGGGTTCCTTTGGTATGG+AGG - chr7_4:12948315-12948334 Msa1140700:intron 55.0%
GAGAGGACATCATGCACTCG+TGG - chr7_4:12948341-12948360 Msa1140700:intron 55.0%
ACATCATGCACTCGTGGCGA+GGG - chr7_4:12948347-12948366 Msa1140700:intron 55.0%
TTGGAGGGGAAGGGAACGAA+GGG + chr7_4:12948505-12948524 None:intergenic 55.0%
ATTGGAGGGGAAGGGAACGA+AGG + chr7_4:12948506-12948525 None:intergenic 55.0%
GTGTACAAAGCCAGCTGCAG+TGG + chr7_4:12949272-12949291 None:intergenic 55.0%
GCTGTGAAGCCTGTCATGCA+AGG - chr7_4:12949739-12949758 Msa1140700:five_prime_UTR 55.0%
AGCGCGTGGAGTGAACGTGA+GGG + chr7_4:12944146-12944165 None:intergenic 60.0%
AAGCGCGTGGAGTGAACGTG+AGG + chr7_4:12944147-12944166 None:intergenic 60.0%
! CGGGAAAATGGTGGAGACGG+TGG - chr7_4:12944360-12944379 Msa1140700:three_prime_UTR 60.0%
GCAGAGCGTGGTTTCCTTCC+CGG - chr7_4:12946502-12946521 Msa1140700:CDS 60.0%
GATGGCAAACGTCTCGCTCC+TGG + chr7_4:12946935-12946954 None:intergenic 60.0%
CCTCTGTCATGGCGACCCTA+GGG - chr7_4:12947297-12947316 Msa1140700:intron 60.0%
!! GGAACAAGAGCGCTGGGTTG+TGG - chr7_4:12947506-12947525 Msa1140700:intron 60.0%
GAAGGCTGGTGTGTGTGTGG+TGG - chr7_4:12948285-12948304 Msa1140700:intron 60.0%
GACATCATGCACTCGTGGCG+AGG - chr7_4:12948346-12948365 Msa1140700:intron 60.0%
TGCACTCGTGGCGAGGGTAA+AGG - chr7_4:12948353-12948372 Msa1140700:intron 60.0%
TGGAGGGGAAGGGAACGAAG+GGG + chr7_4:12948504-12948523 None:intergenic 60.0%
CCTTGTGGTGGTTCCAGCAG+AGG + chr7_4:12949385-12949404 None:intergenic 60.0%
CCTCTGCTGGAACCACCACA+AGG - chr7_4:12949382-12949401 Msa1140700:intron 60.0%
GCCTCTGTCATGGCGACCCT+AGG - chr7_4:12947296-12947315 Msa1140700:intron 65.0%
CCCTAGGGTCGCCATGACAG+AGG + chr7_4:12947300-12947319 None:intergenic 65.0%
GGAGGGGAAGGGAACGAAGG+GGG + chr7_4:12948503-12948522 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 12944139 12949928 12944139 ID=Msa1140700;Name=Msa1140700
chr7_4 mRNA 12944139 12949928 12944139 ID=Msa1140700-mRNA-1;Parent=Msa1140700;Name=Msa1140700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=216|1|1|1|1|1|6|303|400
chr7_4 exon 12944139 12944789 12944139 ID=Msa1140700-mRNA-1:exon:3103;Parent=Msa1140700-mRNA-1
chr7_4 exon 12946351 12946584 12946351 ID=Msa1140700-mRNA-1:exon:3102;Parent=Msa1140700-mRNA-1
chr7_4 exon 12946706 12946786 12946706 ID=Msa1140700-mRNA-1:exon:3101;Parent=Msa1140700-mRNA-1
chr7_4 exon 12946909 12947154 12946909 ID=Msa1140700-mRNA-1:exon:3100;Parent=Msa1140700-mRNA-1
chr7_4 exon 12947533 12947642 12947533 ID=Msa1140700-mRNA-1:exon:3099;Parent=Msa1140700-mRNA-1
chr7_4 exon 12949529 12949928 12949529 ID=Msa1140700-mRNA-1:exon:3098;Parent=Msa1140700-mRNA-1
chr7_4 five_prime_UTR 12949713 12949928 12949713 ID=Msa1140700-mRNA-1:five_prime_utr;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12949529 12949712 12949529 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12947533 12947642 12947533 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12946909 12947154 12946909 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12946706 12946786 12946706 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12946351 12946584 12946351 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 CDS 12944442 12944789 12944442 ID=Msa1140700-mRNA-1:cds;Parent=Msa1140700-mRNA-1
chr7_4 three_prime_UTR 12944139 12944441 12944139 ID=Msa1140700-mRNA-1:three_prime_utr;Parent=Msa1140700-mRNA-1
Gene Sequence

>Msa1140700

ATGACCGGGAAAATGGTGGAGACGGTGGAGCAACCTAACGAAGAAGAGCTTTCACTTCTTTCAGTTTCTGATAATGGTGACCGGTCATGGCGGTTGAACTTCGACTCTTTTCAGTTGAATTCTCAGCATACTGAAAAGACACCTAAACCCTCTCCTGGTATTCATGATTGCTATGGTGTTCTTGGTCAAGAAGATAATATTGCTGAGTACTATCAGCAGCAGGTTGAAGTGCTTGAAGGCTTTACCGAAATGGATGCCTTAGCAGAGCGTGGTTTCCTTCCCGGAATGTCAAAGGAGGAGCGAGATAAGTTAGCCAGGAGCGAGACGTTTGCCATCAGAATATCGAACATAGCTAACATGGTTCTTTTTACTGCCAAAGTTTATGCATCAGTCAGAAGTGGCTCCCTAGCCATCATTGCATCCACTTTAGACTCTCTTCTGGACCTCCTTTCTGGATTTATCTTATGGTTCACTGCATTTTCCATGCAAACACCAAATCCGTATCAGTACCCTATTGGAAAGAAGCGGATGCAACCATTGGGAATTCTGGTTTTTGCCTCTGTCATGGCGACCCTAGGGCTGCAAATAATTTTGGAGTCTGCCCGCACACTAATATACACTGATAATACCTTCAGCTTGACTAGGGAACAAGAGCGCTGGGTTGTGGGTATTATGCTTTCAGTGACTTTGGTGAAATTCATGCTAATGATTTATTGCCGCTCTTTTACTAATGAGATTGTGAAGGCCTATGCTCAGGATCACTTTTTTGATGTGATCACTAATGTGATTGGTCTAATTGCTGCACTTTTGGCCAATTATTTTGATGATTGGATGGATCCTGTTGGTGCTATCATTCTGGCTTTGTACACAATTCGCACATGGTCAATGACAGTGTTGGAAAATGTGAATTCACTTGTTGGAAGATCAGCTGCACCAGAGTATCTTCAGAAACTTACATACCTCTGCTGGAACCACCACAAGGCTGTAAGACACATTGACACTGTTCGGGCATATACATTCGGCTCTCACTACTTTGTTGAGGTTGATATCGTTCTACCAGCAGACATGCCTTTGCAAGAGGCTCATGATATCGGGGAATCATTGCAAGAGAAGCTCGAACTTTTGCCTGAGATCGAGCGTGCTTTTGTTCATCTCGATTATGAATTCAGTCACAAACCTGAGCATGCACAAGCACATTCTTAG

Protein sequence

>Msa1140700

MTGKMVETVEQPNEEELSLLSVSDNGDRSWRLNFDSFQLNSQHTEKTPKPSPGIHDCYGVLGQEDNIAEYYQQQVEVLEGFTEMDALAERGFLPGMSKEERDKLARSETFAIRISNIANMVLFTAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESARTLIYTDNTFSLTREQERWVVGIMLSVTLVKFMLMIYCRSFTNEIVKAYAQDHFFDVITNVIGLIAALLANYFDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPADMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEFSHKPEHAQAHS*