AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0946570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946570 MtrunA17_Chr8g0386421 89.933 298 21 2 1 290 1 297 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946570 AT2G32500.2 57.249 269 112 3 24 290 9 276 2.09e-106 311
Msa0946570 AT2G32500.1 56.311 206 87 3 24 227 9 213 1.53e-74 228

Find 78 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATCTGTTTATTGTTTC+GGG 0.115077 6_3:+27967306 Msa0946570:three_prime_UTR
TCCTTACATCTTTGTATTCT+TGG 0.139609 6_3:-27966482 None:intergenic
CTGCTATCTGTTTATTGTTT+CGG 0.203560 6_3:+27967305 Msa0946570:three_prime_UTR
TTACATGCGGTTTCAGAAAA+AGG 0.210570 6_3:+27965098 Msa0946570:CDS
AATGAAGAGACAGTGATTTC+AGG 0.265594 6_3:-27966954 None:intergenic
CTTGAGAACCTTCAAGTAAA+AGG 0.266883 6_3:-27965148 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 6_3:-27964153 None:intergenic
TATACTCCTTAGAGCTTTCA+TGG 0.280782 6_3:-27966312 None:intergenic
TAATACCACCCATTTGATAC+TGG 0.287395 6_3:-27964434 None:intergenic
TTTCCACTCACAAGTTCTTT+TGG 0.299688 6_3:+27967166 Msa0946570:three_prime_UTR
GGTATTATTGCTATTTCATT+AGG 0.307379 6_3:+27964450 Msa0946570:CDS
GGAACATGCACTGGCATCTC+TGG 0.334936 6_3:+27966046 Msa0946570:CDS
AATGCATTAGCGAGCTAAAA+AGG 0.335331 6_3:+27963896 Msa0946570:five_prime_UTR
TGAAAAGGTTACACTGTGTT+AGG 0.360808 6_3:-27967391 None:intergenic
TTTCCTCTGAGAAGCGAGAT+TGG 0.373152 6_3:-27964202 None:intergenic
TCATCTGATTCTTCTTTGGT+TGG 0.376105 6_3:-27964149 None:intergenic
GAGAAGCGAGATTGGAGCTT+TGG 0.392038 6_3:-27964194 None:intergenic
TTCTTAAAGCTCAATGTGTC+TGG 0.392150 6_3:+27967280 Msa0946570:three_prime_UTR
GAATTTCCATGAAAGCTCTA+AGG 0.406314 6_3:+27966306 Msa0946570:CDS
AAAACTTTCCTATGGCAATT+GGG 0.428568 6_3:-27967232 None:intergenic
AAAATAAAATTATATTGAAA+AGG 0.440829 6_3:-27967406 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 6_3:-27966946 None:intergenic
TCATTTAATGAGGGTACCTT+AGG 0.442429 6_3:+27966014 Msa0946570:CDS
TTTCTGAAACCGCATGTAAA+CGG 0.443161 6_3:-27965094 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 6_3:+27966973 Msa0946570:CDS
GGCTCTTGAATCCATTCCAC+TGG 0.451282 6_3:-27964128 None:intergenic
CCTCTATCTTTACCTTTACA+AGG 0.451973 6_3:+27964015 Msa0946570:CDS
GTACACAACCCAGTATCAAA+TGG 0.466541 6_3:+27964425 Msa0946570:CDS
ATCTCGCTTCTCAGAGGAAA+AGG 0.472916 6_3:+27964205 Msa0946570:CDS
AAAGGTAAAGATAGAGGTGT+TGG 0.481571 6_3:-27964009 None:intergenic
TCATTTCTCTGTTGATCCAG+TGG 0.484155 6_3:+27966972 Msa0946570:CDS
AAGGTAAAGATAGAGGTGTT+GGG 0.491493 6_3:-27964008 None:intergenic
TTGTGTAAATTGTACTATCA+AGG 0.504240 6_3:-27966093 None:intergenic
ATGTCAAAATCAAACCTTCA+AGG 0.507168 6_3:+27967344 Msa0946570:three_prime_UTR
ACGGCATGAGTATAGTGGTC+AGG 0.516130 6_3:-27965075 None:intergenic
TGTAAACGGCATGAGTATAG+TGG 0.519619 6_3:-27965080 None:intergenic
AATACCACCCATTTGATACT+GGG 0.530236 6_3:-27964433 None:intergenic
TAAAGATAGAGGTGTTGGGG+GGG 0.530456 6_3:-27964004 None:intergenic
TAACCAGGCGGAACATGCAC+TGG 0.530562 6_3:+27966037 Msa0946570:CDS
TAACTGTCTGGACCTTGTAA+AGG 0.530646 6_3:-27964027 None:intergenic
TACACAACCCAGTATCAAAT+GGG 0.530800 6_3:+27964426 Msa0946570:CDS
CCTTGTAAAGGTAAAGATAG+AGG 0.535505 6_3:-27964015 None:intergenic
GTAGTGATACGATTCCGATC+AGG 0.536411 6_3:+27966343 Msa0946570:CDS
ATGCCAGTGCATGTTCCGCC+TGG 0.536544 6_3:-27966040 None:intergenic
AGCTCTAAGGAGTATACTCA+TGG 0.540924 6_3:+27966319 Msa0946570:CDS
GCAATTGGGTTTCAGAATGT+CGG 0.544545 6_3:-27967218 None:intergenic
TTGTGAGTGGAAATAGAAGC+AGG 0.552159 6_3:-27967156 None:intergenic
GTGATTTCAGGACAATAGGC+TGG 0.558184 6_3:-27966942 None:intergenic
ATCTCTGGCAACAGTGATGT+TGG 0.558570 6_3:+27966061 Msa0946570:CDS
TACATAAGCTCAGTTCCCAC+TGG 0.566469 6_3:-27966988 None:intergenic
CGAAACAATAAACAGATAGC+AGG 0.568699 6_3:-27967304 None:intergenic
TTGTCTGCTAAAAGCAAAGG+AGG 0.570007 6_3:+27964362 Msa0946570:CDS
TGTGGCCAGGAGTTCAGCCA+TGG 0.572033 6_3:+27965969 Msa0946570:intron
ATGTTCCGCCTGGTTACCTA+AGG 0.573483 6_3:-27966030 None:intergenic
AAAGAATAAACTCCACTCCA+TGG 0.578056 6_3:-27965986 None:intergenic
ATGATTTATATATTTCGCAA+AGG 0.580470 6_3:+27965347 Msa0946570:CDS
AGGTAAAGATAGAGGTGTTG+GGG 0.583784 6_3:-27964007 None:intergenic
CCAGGAGTTCAGCCATGGAG+TGG 0.591915 6_3:+27965974 Msa0946570:intron
TTTCTACATGAATTGTGACT+GGG 0.592766 6_3:+27967098 Msa0946570:three_prime_UTR
TGAGGGTACCTTAGGTAACC+AGG 0.595164 6_3:+27966022 Msa0946570:CDS
GTAAATTGTACTATCAAGGA+AGG 0.603275 6_3:-27966089 None:intergenic
TTCTGAAACCCAATTGCCAT+AGG 0.610330 6_3:+27967224 Msa0946570:three_prime_UTR
GTAAAGATAGAGGTGTTGGG+GGG 0.610912 6_3:-27964005 None:intergenic
ATACTCATGCCGTTTACATG+CGG 0.618288 6_3:+27965085 Msa0946570:CDS
TTATATATTTCGCAAAGGAG+AGG 0.620757 6_3:+27965352 Msa0946570:CDS
CATTTGTCTGCTAAAAGCAA+AGG 0.624906 6_3:+27964359 Msa0946570:CDS
AAAGGAGGGATTATCTGAAG+AGG 0.627071 6_3:+27964377 Msa0946570:CDS
TTCGTGTAGAAGAAAAGTTG+TGG 0.627662 6_3:+27964332 Msa0946570:intron
TGAGATTGGGATAACCTGAT+CGG 0.630126 6_3:-27966357 None:intergenic
TAGCCAAAAGAACTTGTGAG+TGG 0.632547 6_3:-27967169 None:intergenic
GGTAAAGATAGAGGTGTTGG+GGG 0.632982 6_3:-27964006 None:intergenic
TGTCTGCTAAAAGCAAAGGA+GGG 0.635547 6_3:+27964363 Msa0946570:CDS
GGAACTGAGCTTATGTAGTG+AGG 0.643018 6_3:+27966994 Msa0946570:exon
GCTCCAATCTCGCTTCTCAG+AGG 0.670450 6_3:+27964199 Msa0946570:CDS
GCTGCGTATAAATATCTCGA+AGG 0.686766 6_3:-27966460 None:intergenic
TTGATAGTACAATTTACACA+AGG 0.690159 6_3:+27966095 Msa0946570:CDS
ACAACCCAGTATCAAATGGG+TGG 0.704834 6_3:+27964429 Msa0946570:CDS
GGGTACCTTAGGTAACCAGG+CGG 0.811298 6_3:+27966025 Msa0946570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTTATAATAGA+TGG - chr6_3:27964679-27964698 None:intergenic 10.0%
!! TCTATTATAAAAAAAAAACA+AGG + chr6_3:27964679-27964698 Msa0946570:intron 10.0%
!! AATATAAACTAAACTATATT+TGG + chr6_3:27966889-27966908 Msa0946570:intron 10.0%
!! TTATTACTTATTACTGTATT+AGG + chr6_3:27964254-27964273 Msa0946570:intron 15.0%
!!! TATCTATTTTTTTCAACATT+AGG + chr6_3:27964821-27964840 Msa0946570:intron 15.0%
!! TTATTCTAACAGTAATTATT+TGG + chr6_3:27965913-27965932 Msa0946570:intron 15.0%
!! TATTCTAACAGTAATTATTT+GGG + chr6_3:27965914-27965933 Msa0946570:intron 15.0%
!! GTTATTAATATTTAATTGTC+AGG + chr6_3:27966280-27966299 Msa0946570:intron 15.0%
!! TATAATTCAGAATATTTGTT+TGG + chr6_3:27966623-27966642 Msa0946570:intron 15.0%
!! ATAATTCAGAATATTTGTTT+GGG + chr6_3:27966624-27966643 Msa0946570:intron 15.0%
!!! ATTTCAGTTTTTATTTTTGA+AGG - chr6_3:27966826-27966845 None:intergenic 15.0%
!!! AATACATCATATTTTTCTAT+TGG + chr6_3:27967453-27967472 Msa0946570:three_prime_UTR 15.0%
!! TAATCATAATGACATGAAAA+TGG - chr6_3:27964290-27964309 None:intergenic 20.0%
!!! AGAACATTTACTTTGTTATT+AGG + chr6_3:27964513-27964532 Msa0946570:intron 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG + chr6_3:27964696-27964715 Msa0946570:intron 20.0%
!! ATTTGAATTCAAATGTTACT+CGG - chr6_3:27964794-27964813 None:intergenic 20.0%
!! AAAATAAAGGAAAAGAGAAT+CGG - chr6_3:27965219-27965238 None:intergenic 20.0%
!!! ACCTTTACTAATTTTGTTTT+AGG + chr6_3:27965283-27965302 Msa0946570:intron 20.0%
!!! CCTTTACTAATTTTGTTTTA+GGG + chr6_3:27965284-27965303 Msa0946570:intron 20.0%
!! ATGATTTATATATTTCGCAA+AGG + chr6_3:27965347-27965366 Msa0946570:CDS 20.0%
!! TTACTGTTAGAATAAAATAC+TGG - chr6_3:27965908-27965927 None:intergenic 20.0%
!! ATTCTAACAGTAATTATTTG+GGG + chr6_3:27965915-27965934 Msa0946570:intron 20.0%
!!! TCTTTTGATATCATTTAATG+AGG + chr6_3:27966004-27966023 Msa0946570:CDS 20.0%
!!! CTTTTGATATCATTTAATGA+GGG + chr6_3:27966005-27966024 Msa0946570:CDS 20.0%
!!! TTAAACATTGTTTTATGCTT+AGG + chr6_3:27966522-27966541 Msa0946570:intron 20.0%
!! ATTATATAGTTTACAGGAAA+GGG - chr6_3:27966609-27966628 None:intergenic 20.0%
!! AATTATATAGTTTACAGGAA+AGG - chr6_3:27966610-27966629 None:intergenic 20.0%
!! TTCTGAATTATATAGTTTAC+AGG - chr6_3:27966615-27966634 None:intergenic 20.0%
!! TAATTCAGAATATTTGTTTG+GGG + chr6_3:27966625-27966644 Msa0946570:intron 20.0%
!! AACTAAACTATATTTGGATT+TGG + chr6_3:27966895-27966914 Msa0946570:intron 20.0%
!!! GGTATTATTGCTATTTCATT+AGG + chr6_3:27964450-27964469 Msa0946570:CDS 25.0%
! ATTCTAGATGAAATTCATGT+GGG - chr6_3:27964601-27964620 None:intergenic 25.0%
!!! ATTAAACTAGAGAAGTGTTA+AGG - chr6_3:27964653-27964672 None:intergenic 25.0%
!! AGTTTTCATAGAACTTTTCA+AGG - chr6_3:27965128-27965147 None:intergenic 25.0%
! TGAGAGTAACAGAAAAATAA+AGG - chr6_3:27965232-27965251 None:intergenic 25.0%
! CCCTAAAACAAAATTAGTAA+AGG - chr6_3:27965287-27965306 None:intergenic 25.0%
!!! GTTTTAGGGATTAATTAATG+TGG + chr6_3:27965298-27965317 Msa0946570:intron 25.0%
!! ATTCCTAATACTTTAGTCTT+AGG + chr6_3:27965662-27965681 Msa0946570:intron 25.0%
!! TATCCTAAGACTAAAGTATT+AGG - chr6_3:27965668-27965687 None:intergenic 25.0%
! TTCTAACAGTAATTATTTGG+GGG + chr6_3:27965916-27965935 Msa0946570:intron 25.0%
! TTGTGTAAATTGTACTATCA+AGG - chr6_3:27966096-27966115 None:intergenic 25.0%
!! TTGATAGTACAATTTACACA+AGG + chr6_3:27966095-27966114 Msa0946570:CDS 25.0%
! TAAAAGACCTAATTACACAA+CGG - chr6_3:27966169-27966188 None:intergenic 25.0%
!! TGTAATTAGGTCTTTTAACA+TGG + chr6_3:27966172-27966191 Msa0946570:intron 25.0%
!!! GTCTGATTTTTTTTCCAATT+TGG + chr6_3:27966391-27966410 Msa0946570:intron 25.0%
! TGTAAAATGTATTTGTCTAC+AGG - chr6_3:27966783-27966802 None:intergenic 25.0%
!! TATATTTGGATTTGGTAAAC+AGG + chr6_3:27966903-27966922 Msa0946570:intron 25.0%
!! ATATAAAAAGTGTACCTTGA+AGG - chr6_3:27967361-27967380 None:intergenic 25.0%
CATTCTAGATGAAATTCATG+TGG - chr6_3:27964602-27964621 None:intergenic 30.0%
! TAGTCTCTTTTTGTTCTTTC+TGG - chr6_3:27964918-27964937 None:intergenic 30.0%
! TGAAAACTCCTTTTACTTGA+AGG + chr6_3:27965140-27965159 Msa0946570:CDS 30.0%
TTATATATTTCGCAAAGGAG+AGG + chr6_3:27965352-27965371 Msa0946570:CDS 30.0%
TTCTGGATCGATAAATTGAA+GGG + chr6_3:27965398-27965417 Msa0946570:intron 30.0%
CAATTCATATTTGACCATAC+AGG + chr6_3:27965440-27965459 Msa0946570:intron 30.0%
! TTAGCATCCACATTTTGTAA+TGG - chr6_3:27965544-27965563 None:intergenic 30.0%
TCTAACAGTAATTATTTGGG+GGG + chr6_3:27965917-27965936 Msa0946570:intron 30.0%
GTAAATTGTACTATCAAGGA+AGG - chr6_3:27966092-27966111 None:intergenic 30.0%
AACATGTGAATAAATGTTGG+TGG - chr6_3:27966134-27966153 None:intergenic 30.0%
!!! CAGTTCATTGTTTTGACAAA+AGG + chr6_3:27966211-27966230 Msa0946570:intron 30.0%
TCCTTACATCTTTGTATTCT+TGG - chr6_3:27966485-27966504 None:intergenic 30.0%
! GTCATTTGTTACACAACTTT+AGG + chr6_3:27966547-27966566 Msa0946570:intron 30.0%
! ATTTGTTACACAACTTTAGG+TGG + chr6_3:27966550-27966569 Msa0946570:intron 30.0%
! TCGAGTAAAATTGAAAGTGT+CGG - chr6_3:27966692-27966711 None:intergenic 30.0%
TATTTATTCCAAATGCTCAC+AGG + chr6_3:27967074-27967093 Msa0946570:intron 30.0%
! TTTTCTACATGAATTGTGAC+TGG + chr6_3:27967097-27967116 Msa0946570:three_prime_UTR 30.0%
TTTCTACATGAATTGTGACT+GGG + chr6_3:27967098-27967117 Msa0946570:three_prime_UTR 30.0%
AAAACTTTCCTATGGCAATT+GGG - chr6_3:27967235-27967254 None:intergenic 30.0%
AAAAACTTTCCTATGGCAAT+TGG - chr6_3:27967236-27967255 None:intergenic 30.0%
AAGCAACAAAAACTTTCCTA+TGG - chr6_3:27967243-27967262 None:intergenic 30.0%
CTGCTATCTGTTTATTGTTT+CGG + chr6_3:27967305-27967324 Msa0946570:three_prime_UTR 30.0%
TGCTATCTGTTTATTGTTTC+GGG + chr6_3:27967306-27967325 Msa0946570:three_prime_UTR 30.0%
ATGTCAAAATCAAACCTTCA+AGG + chr6_3:27967344-27967363 Msa0946570:three_prime_UTR 30.0%
AATGCATTAGCGAGCTAAAA+AGG + chr6_3:27963896-27963915 Msa0946570:five_prime_UTR 35.0%
!! AAGGTAAAGATAGAGGTGTT+GGG - chr6_3:27964011-27964030 None:intergenic 35.0%
! AAAGGTAAAGATAGAGGTGT+TGG - chr6_3:27964012-27964031 None:intergenic 35.0%
CCTTGTAAAGGTAAAGATAG+AGG - chr6_3:27964018-27964037 None:intergenic 35.0%
CCTCTATCTTTACCTTTACA+AGG + chr6_3:27964015-27964034 Msa0946570:CDS 35.0%
AGGAAATTGAAGTAACTGTC+TGG - chr6_3:27964042-27964061 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG - chr6_3:27964152-27964171 None:intergenic 35.0%
ACTCTCATCTGATTCTTCTT+TGG - chr6_3:27964156-27964175 None:intergenic 35.0%
TTCGTGTAGAAGAAAAGTTG+TGG + chr6_3:27964332-27964351 Msa0946570:intron 35.0%
CATTTGTCTGCTAAAAGCAA+AGG + chr6_3:27964359-27964378 Msa0946570:CDS 35.0%
TACACAACCCAGTATCAAAT+GGG + chr6_3:27964426-27964445 Msa0946570:CDS 35.0%
AATACCACCCATTTGATACT+GGG - chr6_3:27964436-27964455 None:intergenic 35.0%
TAATACCACCCATTTGATAC+TGG - chr6_3:27964437-27964456 None:intergenic 35.0%
ACACTCACACACATTGAATT+GGG + chr6_3:27964555-27964574 Msa0946570:intron 35.0%
TGTGTTCGACATGTTACATT+TGG - chr6_3:27964730-27964749 None:intergenic 35.0%
TACTCGGTTACTCTATCTAT+CGG - chr6_3:27964778-27964797 None:intergenic 35.0%
!! TTTCTGAAACCGCATGTAAA+CGG - chr6_3:27965097-27965116 None:intergenic 35.0%
TTACATGCGGTTTCAGAAAA+AGG + chr6_3:27965098-27965117 Msa0946570:CDS 35.0%
CTTGAGAACCTTCAAGTAAA+AGG - chr6_3:27965151-27965170 None:intergenic 35.0%
! CTTTTACTTGAAGGTTCTCA+AGG + chr6_3:27965149-27965168 Msa0946570:CDS 35.0%
TTTACATGTTGGTGCATACA+TGG - chr6_3:27965194-27965213 None:intergenic 35.0%
ATCTCAAAACGTTCATAAGG+AGG - chr6_3:27965261-27965280 None:intergenic 35.0%
!!! TCCTTATGAACGTTTTGAGA+TGG + chr6_3:27965260-27965279 Msa0946570:intron 35.0%
TCCATCTCAAAACGTTCATA+AGG - chr6_3:27965264-27965283 None:intergenic 35.0%
CTGATTTACATTTCCTCTTC+TGG + chr6_3:27965381-27965400 Msa0946570:intron 35.0%
TCAATTTATCGATCCAGAAG+AGG - chr6_3:27965397-27965416 None:intergenic 35.0%
CTTCTGGATCGATAAATTGA+AGG + chr6_3:27965397-27965416 Msa0946570:intron 35.0%
TTTAACACTCACTCTCTCAT+TGG + chr6_3:27965481-27965500 Msa0946570:intron 35.0%
CTCATTGGATGAAATCAATG+TGG + chr6_3:27965496-27965515 Msa0946570:intron 35.0%
AAAATGAACATAGTTGCTCC+TGG + chr6_3:27965626-27965645 Msa0946570:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG + chr6_3:27965627-27965646 Msa0946570:intron 35.0%
TTGACTAATAGCAGCTATAG+TGG - chr6_3:27965762-27965781 None:intergenic 35.0%
!! GTGATTTGTTCAAATTCCAC+TGG + chr6_3:27965815-27965834 Msa0946570:intron 35.0%
! GAAGCAGTGTTGTTAAATAG+CGG - chr6_3:27965867-27965886 None:intergenic 35.0%
! GGTGGATCAAATGAATTTTG+TGG + chr6_3:27965951-27965970 Msa0946570:intron 35.0%
! ATCAAATGAATTTTGTGGCC+AGG + chr6_3:27965956-27965975 Msa0946570:intron 35.0%
AAAGAATAAACTCCACTCCA+TGG - chr6_3:27965989-27966008 None:intergenic 35.0%
!! TCATTTAATGAGGGTACCTT+AGG + chr6_3:27966014-27966033 Msa0946570:CDS 35.0%
GGCAACATGTGAATAAATGT+TGG - chr6_3:27966137-27966156 None:intergenic 35.0%
!! GGTCTTTTAACATGGTTTGT+TGG + chr6_3:27966180-27966199 Msa0946570:intron 35.0%
GAATTTCCATGAAAGCTCTA+AGG + chr6_3:27966306-27966325 Msa0946570:CDS 35.0%
TATACTCCTTAGAGCTTTCA+TGG - chr6_3:27966315-27966334 None:intergenic 35.0%
ACATAACAGACCATGAGATT+GGG - chr6_3:27966373-27966392 None:intergenic 35.0%
GCCAAGAATACAAAGATGTA+AGG + chr6_3:27966481-27966500 Msa0946570:intron 35.0%
! TTGGATTTGGTAAACAGGTA+TGG + chr6_3:27966908-27966927 Msa0946570:intron 35.0%
AATGAAGAGACAGTGATTTC+AGG - chr6_3:27966957-27966976 None:intergenic 35.0%
!! TCCTCTTCTTTTTAGGAACA+AGG + chr6_3:27967123-27967142 Msa0946570:three_prime_UTR 35.0%
TCCTTGTTCCTAAAAAGAAG+AGG - chr6_3:27967127-27967146 None:intergenic 35.0%
!! CTTCTTTTTAGGAACAAGGA+AGG + chr6_3:27967127-27967146 Msa0946570:three_prime_UTR 35.0%
! TTTCCACTCACAAGTTCTTT+TGG + chr6_3:27967166-27967185 Msa0946570:three_prime_UTR 35.0%
TTCTTAAAGCTCAATGTGTC+TGG + chr6_3:27967280-27967299 Msa0946570:three_prime_UTR 35.0%
CGAAACAATAAACAGATAGC+AGG - chr6_3:27967307-27967326 None:intergenic 35.0%
TGAAAAGGTTACACTGTGTT+AGG - chr6_3:27967394-27967413 None:intergenic 35.0%
!! AGGTAAAGATAGAGGTGTTG+GGG - chr6_3:27964010-27964029 None:intergenic 40.0%
TAACTGTCTGGACCTTGTAA+AGG - chr6_3:27964030-27964049 None:intergenic 40.0%
CTCAATTCAATGCATGCATG+CGG - chr6_3:27964074-27964093 None:intergenic 40.0%
!!! TTTCTTTTTCAGCATGCCAG+TGG + chr6_3:27964112-27964131 Msa0946570:intron 40.0%
TTGTCTGCTAAAAGCAAAGG+AGG + chr6_3:27964362-27964381 Msa0946570:CDS 40.0%
TGTCTGCTAAAAGCAAAGGA+GGG + chr6_3:27964363-27964382 Msa0946570:CDS 40.0%
AAAGGAGGGATTATCTGAAG+AGG + chr6_3:27964377-27964396 Msa0946570:CDS 40.0%
GTACACAACCCAGTATCAAA+TGG + chr6_3:27964425-27964444 Msa0946570:CDS 40.0%
CACACTCACACACATTGAAT+TGG + chr6_3:27964554-27964573 Msa0946570:intron 40.0%
TTTACTCTCATGTTCCCAAG+TGG - chr6_3:27964892-27964911 None:intergenic 40.0%
TTAAGAGATGCTAGACGCAT+AGG - chr6_3:27964960-27964979 None:intergenic 40.0%
TGTAAACGGCATGAGTATAG+TGG - chr6_3:27965083-27965102 None:intergenic 40.0%
! ATACTCATGCCGTTTACATG+CGG + chr6_3:27965085-27965104 Msa0946570:CDS 40.0%
! GAGAATCGGTGTTTACATGT+TGG - chr6_3:27965205-27965224 None:intergenic 40.0%
!! GTTTTGTTAGCACTCCTGTA+TGG - chr6_3:27965457-27965476 None:intergenic 40.0%
!! GTAATGGATCCCACATAAAG+TGG - chr6_3:27965528-27965547 None:intergenic 40.0%
GTGGGATCCATTACAAAATG+TGG + chr6_3:27965534-27965553 Msa0946570:intron 40.0%
CATAAAATCTGCTTTCCCCT+AGG - chr6_3:27965586-27965605 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG - chr6_3:27965647-27965666 None:intergenic 40.0%
!!! ACCACTTTTTCCACGATTAG+CGG - chr6_3:27965704-27965723 None:intergenic 40.0%
AACAGTAATTATTTGGGGGG+TGG + chr6_3:27965920-27965939 Msa0946570:intron 40.0%
ACAGTAATTATTTGGGGGGT+GGG + chr6_3:27965921-27965940 Msa0946570:intron 40.0%
ATTACACAACGGCTAACACA+AGG - chr6_3:27966158-27966177 None:intergenic 40.0%
GTGTTAGCCGTTGTGTAATT+AGG + chr6_3:27966159-27966178 Msa0946570:intron 40.0%
!! AGCTCTAAGGAGTATACTCA+TGG + chr6_3:27966319-27966338 Msa0946570:CDS 40.0%
TGAGATTGGGATAACCTGAT+CGG - chr6_3:27966360-27966379 None:intergenic 40.0%
ATCAGGTTATCCCAATCTCA+TGG + chr6_3:27966360-27966379 Msa0946570:intron 40.0%
GACATAACAGACCATGAGAT+TGG - chr6_3:27966374-27966393 None:intergenic 40.0%
GCTGCGTATAAATATCTCGA+AGG - chr6_3:27966463-27966482 None:intergenic 40.0%
GTTACACAACTTTAGGTGGA+AGG + chr6_3:27966554-27966573 Msa0946570:intron 40.0%
!! GTGGAAGGTAGCTTGTTAAA+TGG + chr6_3:27966569-27966588 Msa0946570:intron 40.0%
! GTTTGGGGATCATTTTCTCT+TGG + chr6_3:27966640-27966659 Msa0946570:intron 40.0%
GACAGTGATTTCAGGACAAT+AGG - chr6_3:27966949-27966968 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG + chr6_3:27966972-27966991 Msa0946570:CDS 40.0%
CATTTCTCTGTTGATCCAGT+GGG + chr6_3:27966973-27966992 Msa0946570:CDS 40.0%
AACTTGCCATATGCTTCAAG+TGG + chr6_3:27967036-27967055 Msa0946570:intron 40.0%
GTAGAAAACCTGTGAGCATT+TGG - chr6_3:27967085-27967104 None:intergenic 40.0%
! CTGGGTTTCCTCTTCTTTTT+AGG + chr6_3:27967116-27967135 Msa0946570:three_prime_UTR 40.0%
TTGTGAGTGGAAATAGAAGC+AGG - chr6_3:27967159-27967178 None:intergenic 40.0%
TAGCCAAAAGAACTTGTGAG+TGG - chr6_3:27967172-27967191 None:intergenic 40.0%
GCAATTGGGTTTCAGAATGT+CGG - chr6_3:27967221-27967240 None:intergenic 40.0%
!! TTCTGAAACCCAATTGCCAT+AGG + chr6_3:27967224-27967243 Msa0946570:three_prime_UTR 40.0%
!! TAAAGATAGAGGTGTTGGGG+GGG - chr6_3:27964007-27964026 None:intergenic 45.0%
!! GTAAAGATAGAGGTGTTGGG+GGG - chr6_3:27964008-27964027 None:intergenic 45.0%
!! GGTAAAGATAGAGGTGTTGG+GGG - chr6_3:27964009-27964028 None:intergenic 45.0%
CATGCATGCGGTAACTAATG+AGG - chr6_3:27964062-27964081 None:intergenic 45.0%
! TTTTCAGCATGCCAGTGGAA+TGG + chr6_3:27964117-27964136 Msa0946570:intron 45.0%
! TTTCCTCTGAGAAGCGAGAT+TGG - chr6_3:27964205-27964224 None:intergenic 45.0%
ATCTCGCTTCTCAGAGGAAA+AGG + chr6_3:27964205-27964224 Msa0946570:CDS 45.0%
ACAACCCAGTATCAAATGGG+TGG + chr6_3:27964429-27964448 Msa0946570:CDS 45.0%
TGGATCCCACCACTTTATGT+GGG + chr6_3:27965516-27965535 Msa0946570:intron 45.0%
TGGATCCCACATAAAGTGGT+GGG - chr6_3:27965524-27965543 None:intergenic 45.0%
ATGGATCCCACATAAAGTGG+TGG - chr6_3:27965525-27965544 None:intergenic 45.0%
TGGATGCTAACATGCCTCTT+TGG + chr6_3:27965554-27965573 Msa0946570:intron 45.0%
ATCTGCTTTCCCCTAGGTTA+TGG - chr6_3:27965580-27965599 None:intergenic 45.0%
GTGTTATCAACCGCTAATCG+TGG + chr6_3:27965691-27965710 Msa0946570:intron 45.0%
ACCGCTAATCGTGGAAAAAG+TGG + chr6_3:27965700-27965719 Msa0946570:intron 45.0%
CCTATAATGCGACATTCCAG+TGG - chr6_3:27965834-27965853 None:intergenic 45.0%
CCACTGGAATGTCGCATTAT+AGG + chr6_3:27965831-27965850 Msa0946570:intron 45.0%
CAGTAATTATTTGGGGGGTG+GGG + chr6_3:27965922-27965941 Msa0946570:intron 45.0%
AGTAATTATTTGGGGGGTGG+GGG + chr6_3:27965923-27965942 Msa0946570:intron 45.0%
ATCTCTGGCAACAGTGATGT+TGG + chr6_3:27966061-27966080 Msa0946570:CDS 45.0%
GTAGTGATACGATTCCGATC+AGG + chr6_3:27966343-27966362 Msa0946570:CDS 45.0%
ATTGGTTAGCGCGACCAAAT+TGG - chr6_3:27966408-27966427 None:intergenic 45.0%
GTGATTTCAGGACAATAGGC+TGG - chr6_3:27966945-27966964 None:intergenic 45.0%
TACATAAGCTCAGTTCCCAC+TGG - chr6_3:27966991-27967010 None:intergenic 45.0%
GGAACTGAGCTTATGTAGTG+AGG + chr6_3:27966994-27967013 Msa0946570:exon 45.0%
! TGTCTGCCACTTGAAGCATA+TGG - chr6_3:27967045-27967064 None:intergenic 45.0%
!! AAAATAAAATTATATTGAAA+AGG - chr6_3:27967409-27967428 None:intergenic 5.0%
!!! TTTTCAATATAATTTTATTT+TGG + chr6_3:27967408-27967427 Msa0946570:three_prime_UTR 5.0%
GGCTCTTGAATCCATTCCAC+TGG - chr6_3:27964131-27964150 None:intergenic 50.0%
GAGAAGCGAGATTGGAGCTT+TGG - chr6_3:27964197-27964216 None:intergenic 50.0%
ACTCACACGTACCAACCACT+TGG + chr6_3:27964874-27964893 Msa0946570:intron 50.0%
CTCACACGTACCAACCACTT+GGG + chr6_3:27964875-27964894 Msa0946570:intron 50.0%
CTCTCATGTTCCCAAGTGGT+TGG - chr6_3:27964888-27964907 None:intergenic 50.0%
ATGACCTTGTTGCTCCTGCA+GGG + chr6_3:27965034-27965053 Msa0946570:intron 50.0%
ACGGCATGAGTATAGTGGTC+AGG - chr6_3:27965078-27965097 None:intergenic 50.0%
GTGGATCCCACCACTTTATG+TGG + chr6_3:27965515-27965534 Msa0946570:intron 50.0%
TGCCTCTTTGGCCATAACCT+AGG + chr6_3:27965566-27965585 Msa0946570:intron 50.0%
GCCTCTTTGGCCATAACCTA+GGG + chr6_3:27965567-27965586 Msa0946570:intron 50.0%
CCTCTTTGGCCATAACCTAG+GGG + chr6_3:27965568-27965587 Msa0946570:intron 50.0%
CATAGTTGCTCCTGGGTTCT+AGG + chr6_3:27965634-27965653 Msa0946570:intron 50.0%
AGCAGCTATAGTGGCGCTAT+AGG - chr6_3:27965753-27965772 None:intergenic 50.0%
!! TGAGGGTACCTTAGGTAACC+AGG + chr6_3:27966022-27966041 Msa0946570:CDS 50.0%
ATGTTCCGCCTGGTTACCTA+AGG - chr6_3:27966033-27966052 None:intergenic 50.0%
TTTGGTCGCGCTAACCAATC+TGG + chr6_3:27966409-27966428 Msa0946570:intron 50.0%
GATGACGTCATGCACCAGAT+TGG - chr6_3:27966426-27966445 None:intergenic 50.0%
GACGTCATCTTCTGCAGTTG+AGG + chr6_3:27966437-27966456 Msa0946570:intron 50.0%
TTGGGGGGGTGAATTGACGA+GGG - chr6_3:27963993-27964012 None:intergenic 55.0%
GCTCCAATCTCGCTTCTCAG+AGG + chr6_3:27964199-27964218 Msa0946570:CDS 55.0%
GATGACCTTGTTGCTCCTGC+AGG + chr6_3:27965033-27965052 Msa0946570:intron 55.0%
CCCCTAGGTTATGGCCAAAG+AGG - chr6_3:27965571-27965590 None:intergenic 55.0%
GGGTACCTTAGGTAACCAGG+CGG + chr6_3:27966025-27966044 Msa0946570:CDS 55.0%
TAACCAGGCGGAACATGCAC+TGG + chr6_3:27966037-27966056 Msa0946570:CDS 55.0%
! GGAACATGCACTGGCATCTC+TGG + chr6_3:27966046-27966065 Msa0946570:CDS 55.0%
GTTGGGGGGGTGAATTGACG+AGG - chr6_3:27963994-27964013 None:intergenic 60.0%
TGAGCAGAAACACGCCCTGC+AGG - chr6_3:27965051-27965070 None:intergenic 60.0%
TTATTTGGGGGGTGGGGGTC+TGG + chr6_3:27965928-27965947 Msa0946570:intron 60.0%
TATTTGGGGGGTGGGGGTCT+GGG + chr6_3:27965929-27965948 Msa0946570:intron 60.0%
TGTGGCCAGGAGTTCAGCCA+TGG + chr6_3:27965969-27965988 Msa0946570:intron 60.0%
CCACTCCATGGCTGAACTCC+TGG - chr6_3:27965977-27965996 None:intergenic 60.0%
CCAGGAGTTCAGCCATGGAG+TGG + chr6_3:27965974-27965993 Msa0946570:intron 60.0%
ATGCCAGTGCATGTTCCGCC+TGG - chr6_3:27966043-27966062 None:intergenic 60.0%
CACGCCCTGCAGGAGCAACA+AGG - chr6_3:27965041-27965060 None:intergenic 65.0%
ATTTGGGGGGTGGGGGTCTG+GGG + chr6_3:27965930-27965949 Msa0946570:intron 65.0%
! TGGGGGGTGGGGGTCTGGGG+TGG + chr6_3:27965933-27965952 Msa0946570:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 27963884 27967488 27963884 ID=Msa0946570;Name=Msa0946570
chr6_3 mRNA 27963884 27967488 27963884 ID=Msa0946570-mRNA-1;Parent=Msa0946570;Name=Msa0946570-mRNA-1;_AED=0.24;_eAED=0.24;_QI=62|1|1|1|0.77|0.7|10|407|290
chr6_3 exon 27963884 27964042 27963884 ID=Msa0946570-mRNA-1:exon:7570;Parent=Msa0946570-mRNA-1
chr6_3 exon 27964124 27964226 27964124 ID=Msa0946570-mRNA-1:exon:7571;Parent=Msa0946570-mRNA-1
chr6_3 exon 27964341 27964471 27964341 ID=Msa0946570-mRNA-1:exon:7572;Parent=Msa0946570-mRNA-1
chr6_3 exon 27965055 27965194 27965055 ID=Msa0946570-mRNA-1:exon:7573;Parent=Msa0946570-mRNA-1
chr6_3 exon 27965305 27965373 27965305 ID=Msa0946570-mRNA-1:exon:7574;Parent=Msa0946570-mRNA-1
chr6_3 exon 27965978 27966116 27965978 ID=Msa0946570-mRNA-1:exon:7575;Parent=Msa0946570-mRNA-1
chr6_3 exon 27966302 27966364 27966302 ID=Msa0946570-mRNA-1:exon:7576;Parent=Msa0946570-mRNA-1
chr6_3 exon 27966454 27966497 27966454 ID=Msa0946570-mRNA-1:exon:7577;Parent=Msa0946570-mRNA-1
chr6_3 exon 27966925 27967025 27966925 ID=Msa0946570-mRNA-1:exon:7578;Parent=Msa0946570-mRNA-1
chr6_3 exon 27967096 27967488 27967096 ID=Msa0946570-mRNA-1:exon:7579;Parent=Msa0946570-mRNA-1
chr6_3 five_prime_UTR 27963884 27963945 27963884 ID=Msa0946570-mRNA-1:five_prime_utr;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27963946 27964042 27963946 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27964124 27964226 27964124 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27964341 27964471 27964341 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27965055 27965194 27965055 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27965305 27965373 27965305 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27965978 27966116 27965978 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27966302 27966364 27966302 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27966454 27966497 27966454 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 CDS 27966925 27967011 27966925 ID=Msa0946570-mRNA-1:cds;Parent=Msa0946570-mRNA-1
chr6_3 three_prime_UTR 27967012 27967025 27967012 ID=Msa0946570-mRNA-1:three_prime_utr;Parent=Msa0946570-mRNA-1
chr6_3 three_prime_UTR 27967096 27967488 27967096 ID=Msa0946570-mRNA-1:three_prime_utr;Parent=Msa0946570-mRNA-1
Gene Sequence

>Msa0946570

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCCCCAACACCTCTATCTTTACCTTTACAAGGTCCAGCATGCCAGTGGAATGGATTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTCTCAGAGGAAAAGAAGAAAAGTTGTGGAGCACATTTGTCTGCTAAAAGCAAAGGAGGGATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAGTATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCCGTTTACATGCGGTTTCAGAAAAAGGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGAGTTCAGCCATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCCATGAAAGCTCTAAGGAGTATACTCATGGAGTAGTGATACGATTCCGATCAGTTGAGGCCTTCGAGATATTTATACGCAGCCAAGAATACAAAGATGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTGTCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGCTTATGTAG

Protein sequence

>Msa0946570

MSFAMQCSNYSSFCVPRQFTPPTPLSLPLQGPACQWNGFKSQPKKNQMRVFCSSDDQSSNLASQRKRRKVVEHICLLKAKEGLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKKENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFRKGEEFSHGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFHESSKEYTHGVVIRFRSVEAFEIFIRSQEYKDVWISKFQPIVLKSLSLHFSVDPVGTELM*