AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0941320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941320 MtrunA17_Chr6g0457251 91.765 425 28 2 1 423 1 420 0.0 784
Msa0941320 MtrunA17_Chr2g0318441 30.380 158 109 1 204 361 144 300 6.31e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941320 AT5G38510.2 43.943 421 185 10 1 412 51 429 9.97e-111 333
Msa0941320 AT5G38510.3 43.943 421 185 10 1 412 51 429 9.97e-111 333
Msa0941320 AT5G38510.1 43.943 421 185 10 1 412 51 429 9.97e-111 333
Msa0941320 AT1G25290.2 26.961 204 133 4 161 361 120 310 1.40e-17 84.0
Msa0941320 AT1G25290.1 26.794 209 130 5 163 361 122 317 4.29e-16 79.7
Msa0941320 AT1G12750.4 28.723 188 117 5 216 395 96 274 1.76e-12 68.2
Msa0941320 AT1G12750.7 28.723 188 117 5 216 395 96 274 1.76e-12 68.2
Msa0941320 AT1G12750.6 28.723 188 117 5 216 395 96 274 1.76e-12 68.2
Msa0941320 AT1G12750.3 28.723 188 117 5 216 395 96 274 1.76e-12 68.2
Msa0941320 AT1G12750.1 28.723 188 117 5 216 395 96 274 1.76e-12 68.2
Msa0941320 AT5G07250.1 27.876 226 144 5 159 375 76 291 5.91e-11 63.9

Find 99 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATACTTGGTGGAGTTTC+TGG 0.113845 6_3:-15108985 Msa0941320:CDS
AGATCATTAGATTCTTATTT+TGG 0.146046 6_3:-15110991 Msa0941320:CDS
GCTTATAACACCAATGTTTC+TGG 0.197615 6_3:-15109586 Msa0941320:intron
CTTATATTGACATAAGTATT+TGG 0.197910 6_3:+15110416 None:intergenic
TTTAAGCTATCAGTCCTTAT+AGG 0.232108 6_3:+15109678 None:intergenic
GGACCTGCATTTGCAATAAT+TGG 0.239871 6_3:-15108515 Msa0941320:CDS
TGTTGGGCCCTTGTATCATT+TGG 0.251678 6_3:-15109054 Msa0941320:CDS
CAGATTCTCAAATGAAGTTT+AGG 0.267806 6_3:+15111816 None:intergenic
TTGAAATTGCAAGTCCTATA+AGG 0.273008 6_3:-15109692 Msa0941320:CDS
ACTTAAAACAACGACGAATA+TGG 0.283739 6_3:+15108077 None:intergenic
CTACCTGTTCAAGTTTGTTA+TGG 0.284735 6_3:+15111789 None:intergenic
AGTCCTTCTCCACCGGTTCC+TGG 0.288228 6_3:+15108150 None:intergenic
ATCTTATGTTGAAAATTCTA+AGG 0.311682 6_3:-15110501 Msa0941320:CDS
AAGAACACATGCATAATTCT+TGG 0.314969 6_3:-15111093 Msa0941320:CDS
GTTGGGCCCTTGTATCATTT+GGG 0.328782 6_3:-15109053 Msa0941320:CDS
TACCTGTTCAAGTTTGTTAT+GGG 0.338540 6_3:+15111790 None:intergenic
TCTTGGCTGATAATTTGTTT+TGG 0.349202 6_3:+15110464 None:intergenic
TTCACATGGCTCTGAGTTGT+TGG 0.358549 6_3:-15109071 Msa0941320:CDS
GCAATAATTATTACAGCTCT+TGG 0.373294 6_3:-15108419 Msa0941320:CDS
AAGATGCCACAAGAGATTCT+TGG 0.377102 6_3:+15110519 None:intergenic
AATTTGTTCTTTGAGTATCT+TGG 0.388326 6_3:+15110447 None:intergenic
TCACATGGCTCTGAGTTGTT+GGG 0.398292 6_3:-15109070 Msa0941320:CDS
TATCTTGGCAAAGTAAATAA+AGG 0.400520 6_3:-15110853 Msa0941320:intron
CTGAAACTTGTTACAAAATA+CGG 0.414309 6_3:-15108129 Msa0941320:CDS
ATTCAGATTGACCATTTCCT+TGG 0.415293 6_3:+15110905 None:intergenic
ATATGGCTTTCTAACTAGTT+CGG 0.422427 6_3:-15108196 Msa0941320:CDS
GCTTTCACAGGCATGGCATA+TGG 0.423692 6_3:-15108213 Msa0941320:CDS
TGAAAACCAAAGTACAATAC+TGG 0.430026 6_3:+15111764 None:intergenic
TATCTGGTGCAGAGGTATAT+TGG 0.430725 6_3:-15109742 Msa0941320:intron
TAGTCACTGTACTTGTACTT+TGG 0.433635 6_3:-15111730 Msa0941320:five_prime_UTR
AGCCCATAACAAACTTGAAC+AGG 0.443254 6_3:-15111792 Msa0941320:five_prime_UTR
AACTAGTTCGGCTCTTCAGC+AGG 0.444008 6_3:-15108184 Msa0941320:CDS
GAGTCTCTTGATGAGTATCT+TGG 0.444739 6_3:-15110868 Msa0941320:CDS
TACCTCTTATAAGCCTCCTT+TGG 0.445392 6_3:+15111889 None:intergenic
CATTTGCAATAATTGGTGCT+TGG 0.448850 6_3:-15108508 Msa0941320:CDS
CATGCATACCACTCATCAAT+TGG 0.465140 6_3:+15108374 None:intergenic
GGTTTCATATTATGCAACCT+TGG 0.469478 6_3:-15108398 Msa0941320:CDS
AAAGATAAACCATTTGATCA+TGG 0.472368 6_3:-15109625 Msa0941320:CDS
AGAAGAATCCAAGGTGTTAG+TGG 0.474212 6_3:-15110395 Msa0941320:CDS
ATTCTCCAACCATGATCAAA+TGG 0.479448 6_3:+15109616 None:intergenic
ATTATGCATGTGTTCTTGTA+AGG 0.479821 6_3:+15111099 None:intergenic
ATAAACCATTTGATCATGGT+TGG 0.480102 6_3:-15109621 Msa0941320:CDS
TTCTTGATCTACATACTTGG+TGG 0.485241 6_3:-15108994 Msa0941320:CDS
CATCACCTCATTTGATGCAT+CGG 0.492626 6_3:+15110936 None:intergenic
ATGAATGTGCACCAAGGAAA+TGG 0.493528 6_3:-15110916 Msa0941320:CDS
TTCCAAAGGAGGCTTATAAG+AGG 0.498166 6_3:-15111891 Msa0941320:five_prime_UTR
CAATCTTGTACCAGAAACAT+TGG 0.503254 6_3:+15109576 None:intergenic
TGAAGTAGCTGTTGTAGCCT+TGG 0.504938 6_3:-15108004 Msa0941320:CDS
CAGCAGGACGCGACATCACC+AGG 0.505791 6_3:-15108168 Msa0941320:CDS
ATCTTTGCTCCATATAGCAT+TGG 0.508292 6_3:+15109642 None:intergenic
CCTCAAGTTTGCAAAGGCTA+TGG 0.508897 6_3:-15109030 Msa0941320:CDS
GACGCGACATCACCAGGAAC+CGG 0.509006 6_3:-15108162 Msa0941320:CDS
CTTGAGGCCCAAATGATACA+AGG 0.512714 6_3:+15109046 None:intergenic
CACTCGGGAGCAGCTTTCAC+AGG 0.520814 6_3:-15108225 Msa0941320:CDS
GTAGGTCCAGTATTGTACTT+TGG 0.522345 6_3:-15111770 Msa0941320:five_prime_UTR
AAGTTTCAGTCCTTCTCCAC+CGG 0.525798 6_3:+15108143 None:intergenic
GACTTACATGAGGTAAAGAC+TGG 0.528142 6_3:+15110328 None:intergenic
GTGCCACCAACAGTTGGATC+TGG 0.531605 6_3:+15108937 None:intergenic
TCACCAGGAACCGGTGGAGA+AGG 0.542931 6_3:-15108153 Msa0941320:CDS
ATTTGATCATGGTTGGAGAA+TGG 0.543964 6_3:-15109614 Msa0941320:CDS
GCACCAATTATTGCAAATGC+AGG 0.555521 6_3:+15108512 None:intergenic
AAATCTGAATGGAGAAAGGG+TGG 0.555879 6_3:-15107813 Msa0941320:three_prime_UTR
ATTCATTTGTAGGTCACACT+CGG 0.558948 6_3:-15108241 Msa0941320:intron
GGGAGCAGCTTTCACAGGCA+TGG 0.568886 6_3:-15108220 Msa0941320:CDS
AGAAGGAACTTATCAACCCA+TGG 0.570065 6_3:-15107860 Msa0941320:three_prime_UTR
AATCTAATTCATCTAACCAT+GGG 0.572132 6_3:+15107844 None:intergenic
TAGAAAACAGTTTCCAAAGG+AGG 0.572431 6_3:-15111902 Msa0941320:five_prime_UTR
TTCTGAGAATCTATTCAAGA+AGG 0.575053 6_3:-15108441 Msa0941320:CDS
GTCAATATAAGAAGAATCCA+AGG 0.577070 6_3:-15110404 Msa0941320:CDS
AAATCTAATTCATCTAACCA+TGG 0.580068 6_3:+15107843 None:intergenic
TAGTAGAAAACAGTTTCCAA+AGG 0.580535 6_3:-15111905 Msa0941320:five_prime_UTR
ACACCAGATCCAACTGTTGG+TGG 0.580925 6_3:-15108940 Msa0941320:CDS
CTTACAGTGCCACCAACAGT+TGG 0.582461 6_3:+15108931 None:intergenic
CAGATGCCAATGCATTGAGA+GGG 0.584447 6_3:+15108031 None:intergenic
TTTGGGCCTCAAGTTTGCAA+AGG 0.592340 6_3:-15109036 Msa0941320:CDS
CCATAGCCTTTGCAAACTTG+AGG 0.593757 6_3:+15109030 None:intergenic
ACAGATGCCAATGCATTGAG+AGG 0.600042 6_3:+15108030 None:intergenic
TGTTTCCGATGCATCAAATG+AGG 0.607429 6_3:-15110941 Msa0941320:CDS
AAGTATTGACATATATTCCA+AGG 0.610798 6_3:+15107987 None:intergenic
TCATGGTTGGAGAATGGTGG+AGG 0.615589 6_3:-15109608 Msa0941320:CDS
TTCATTTGTAGGTCACACTC+GGG 0.616886 6_3:-15108240 Msa0941320:intron
ATATTGAACCACTAACACCT+TGG 0.618553 6_3:+15110387 None:intergenic
TCTTAGTTTCTTCTCAGCAG+AGG 0.618686 6_3:+15111011 None:intergenic
ATATTGGCATCAGTGAACAT+TGG 0.618895 6_3:-15109726 Msa0941320:CDS
GCGACATCACCAGGAACCGG+TGG 0.628503 6_3:-15108159 Msa0941320:CDS
TTTCTACTATAAATTGTGTG+AGG 0.637475 6_3:+15111919 None:intergenic
GTACCAAATTCAAAATAGAG+AGG 0.642240 6_3:-15108480 Msa0941320:CDS
CATACACCAGATCCAACTGT+TGG 0.642520 6_3:-15108943 Msa0941320:CDS
ACTATAAATTGTGTGAGGTG+TGG 0.651131 6_3:+15111924 None:intergenic
TGATCATGGTTGGAGAATGG+TGG 0.656061 6_3:-15109611 Msa0941320:CDS
ACCTTGGTCCAATTGATGAG+TGG 0.663630 6_3:-15108382 Msa0941320:intron
TTGAGGCCCAAATGATACAA+GGG 0.665598 6_3:+15109047 None:intergenic
GATGCCAATGCATTGAGAGG+GGG 0.668617 6_3:+15108033 None:intergenic
CATAAACCAAGAATCTCTTG+TGG 0.669264 6_3:-15110525 Msa0941320:CDS
AGATGCCAATGCATTGAGAG+GGG 0.670513 6_3:+15108032 None:intergenic
GCATGCAGGAATATTTCACA+TGG 0.672691 6_3:-15109085 Msa0941320:CDS
CATAACAAACTTGAACAGGT+AGG 0.678932 6_3:-15111788 Msa0941320:five_prime_UTR
ACCACTCATCAATTGGACCA+AGG 0.692729 6_3:+15108381 None:intergenic
GAGGTGATGAATGTGCACCA+AGG 0.774607 6_3:-15110922 Msa0941320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATGATAAATAAAAG+AGG + chr6_3:15110528-15110547 None:intergenic 10.0%
!! AAATATAAATATTTATTTGG+TGG - chr6_3:15111485-15111504 Msa0941320:intron 10.0%
!! AACAAAATAAAATTGTCATA+AGG + chr6_3:15108074-15108093 None:intergenic 15.0%
!!! AATGTCTTGTTATTATTAAT+TGG + chr6_3:15108179-15108198 None:intergenic 15.0%
!!! GAAATGTTATATATGAATTT+TGG + chr6_3:15109135-15109154 None:intergenic 15.0%
!! AATTTAATTCTTGCAAAATT+TGG + chr6_3:15111034-15111053 None:intergenic 15.0%
!! ATAAATTTAACTGCAAGATT+TGG - chr6_3:15108325-15108344 Msa0941320:intron 20.0%
!!! TAATAAGGTATTTACTAAAG+AGG + chr6_3:15108371-15108390 None:intergenic 20.0%
!! ATTCACACTCTAATTTAATA+AGG + chr6_3:15108386-15108405 None:intergenic 20.0%
!!! AGATCATTAGATTCTTATTT+TGG - chr6_3:15108760-15108779 Msa0941320:intron 20.0%
!! ATCTTATGTTGAAAATTCTA+AGG - chr6_3:15109250-15109269 Msa0941320:intron 20.0%
!!! ATACTCAAAGAACAAATTTT+AGG - chr6_3:15109309-15109328 Msa0941320:intron 20.0%
!! CTTATATTGACATAAGTATT+TGG + chr6_3:15109338-15109357 None:intergenic 20.0%
!! CTAATTTACCTATGAAATAT+AGG - chr6_3:15109650-15109669 Msa0941320:CDS 20.0%
!!! AATCAATTAACTTTTACCAT+CGG + chr6_3:15109819-15109838 None:intergenic 20.0%
!! TAGTTTCATGTATATATATG+TGG + chr6_3:15110224-15110243 None:intergenic 20.0%
!! ATCATTTAACTCTATATTTC+TGG - chr6_3:15110271-15110290 Msa0941320:intron 20.0%
!! TAATTCATAGTAAAATCATG+CGG - chr6_3:15110875-15110894 Msa0941320:CDS 20.0%
!!! ATTGATCCTATATTTTCATT+AGG - chr6_3:15111051-15111070 Msa0941320:CDS 20.0%
!! CAAAATGTTACATATACATT+CGG - chr6_3:15111443-15111462 Msa0941320:intron 20.0%
! TTTCTACTATAAATTGTGTG+AGG + chr6_3:15107835-15107854 None:intergenic 25.0%
!!! TGTACTTTGGTATTTTTAAG+AGG - chr6_3:15108034-15108053 Msa0941320:CDS 25.0%
!! AAGACAATTTTGTTCATCAT+TGG - chr6_3:15108199-15108218 Msa0941320:CDS 25.0%
! AGTGTGAATATAAATACCAA+TGG - chr6_3:15108397-15108416 Msa0941320:CDS 25.0%
!!! TTGATTTTTTCATCAACCAT+TGG + chr6_3:15108416-15108435 None:intergenic 25.0%
!! TTTTCTATTTTCTCTTCTTC+AGG - chr6_3:15108594-15108613 Msa0941320:intron 25.0%
! TATCTTGGCAAAGTAAATAA+AGG - chr6_3:15108898-15108917 Msa0941320:intron 25.0%
!!! GGTAAAGTGTAATTACTTTT+TGG - chr6_3:15108919-15108938 Msa0941320:intron 25.0%
! AATTTCTACAACAATTTCGA+TGG + chr6_3:15109094-15109113 None:intergenic 25.0%
!! ATGTAAGTTTTTATGTATGC+AGG - chr6_3:15109203-15109222 Msa0941320:intron 25.0%
!! AATTTGTTCTTTGAGTATCT+TGG + chr6_3:15109307-15109326 None:intergenic 25.0%
!! TCTCAGTTATATTCTTTTGT+CGG - chr6_3:15109543-15109562 Msa0941320:intron 25.0%
! CTGCGAATATACAAATTTAA+AGG - chr6_3:15109878-15109897 Msa0941320:intron 25.0%
! AATTGAGTGAATATGCAAAT+TGG + chr6_3:15109936-15109955 None:intergenic 25.0%
! TTCTTCTATGTTGTTATATC+TGG - chr6_3:15109993-15110012 Msa0941320:intron 25.0%
! AAAGATAAACCATTTGATCA+TGG - chr6_3:15110126-15110145 Msa0941320:intron 25.0%
! TCATGTATATATATGTGGAA+TGG + chr6_3:15110219-15110238 None:intergenic 25.0%
!! TATATTTCTGATTTCTCAGA+TGG + chr6_3:15110327-15110346 None:intergenic 25.0%
!!! TGGTAGATTTTTAAAACAAC+TGG + chr6_3:15110365-15110384 None:intergenic 25.0%
! AACAAAACTAGAAATCAAAC+CGG + chr6_3:15110583-15110602 None:intergenic 25.0%
!! TTTTTCTTGATCTACATACT+TGG - chr6_3:15110754-15110773 Msa0941320:intron 25.0%
! CAAAGACCTAATGAAAATAT+AGG + chr6_3:15111060-15111079 None:intergenic 25.0%
!!! CTGAAACTTGTTACAAAATA+CGG - chr6_3:15111622-15111641 Msa0941320:intron 25.0%
!!! AAGTATTGACATATATTCCA+AGG + chr6_3:15111767-15111786 None:intergenic 25.0%
! AATCTAATTCATCTAACCAT+GGG + chr6_3:15111910-15111929 None:intergenic 25.0%
! AAATCTAATTCATCTAACCA+TGG + chr6_3:15111911-15111930 None:intergenic 25.0%
! ATTTCCCTAAAAAATCTGAA+TGG - chr6_3:15111927-15111946 Msa0941320:five_prime_UTR 25.0%
!!! TTCTCCATTCAGATTTTTTA+GGG + chr6_3:15111934-15111953 None:intergenic 25.0%
!!! TTTCTCCATTCAGATTTTTT+AGG + chr6_3:15111935-15111954 None:intergenic 25.0%
! TAAAAAATCTGAATGGAGAA+AGG - chr6_3:15111934-15111953 Msa0941320:five_prime_UTR 25.0%
! AAAAAATCTGAATGGAGAAA+GGG - chr6_3:15111935-15111954 Msa0941320:five_prime_UTR 25.0%
TAGTAGAAAACAGTTTCCAA+AGG - chr6_3:15107846-15107865 Msa0941320:three_prime_UTR 30.0%
CAGATTCTCAAATGAAGTTT+AGG + chr6_3:15107938-15107957 None:intergenic 30.0%
!! TACCTGTTCAAGTTTGTTAT+GGG + chr6_3:15107964-15107983 None:intergenic 30.0%
TGAAAACCAAAGTACAATAC+TGG + chr6_3:15107990-15108009 None:intergenic 30.0%
GATATTGCAGCTCTTAAATT+AGG - chr6_3:15108294-15108313 Msa0941320:intron 30.0%
!! TGCAAGATTTGGTTGTATTT+TGG - chr6_3:15108336-15108355 Msa0941320:intron 30.0%
GGTATTTACTAAAGAGGAAT+TGG + chr6_3:15108365-15108384 None:intergenic 30.0%
TAACACACACCTAGTAATAA+TGG - chr6_3:15108530-15108549 Msa0941320:intron 30.0%
ATTATGCATGTGTTCTTGTA+AGG + chr6_3:15108655-15108674 None:intergenic 30.0%
AAGAACACATGCATAATTCT+TGG - chr6_3:15108658-15108677 Msa0941320:intron 30.0%
GCTTAATTACGTTTAGTAGA+TGG + chr6_3:15109051-15109070 None:intergenic 30.0%
! TGAAGTATTTGCTTAATGCA+TGG - chr6_3:15109167-15109186 Msa0941320:intron 30.0%
!!! TCTTGGCTGATAATTTGTTT+TGG + chr6_3:15109290-15109309 None:intergenic 30.0%
GTCAATATAAGAAGAATCCA+AGG - chr6_3:15109347-15109366 Msa0941320:intron 30.0%
ACAAAACAGGAATTTATGAC+AGG + chr6_3:15109453-15109472 None:intergenic 30.0%
TGAGATGTCCTATATTTCAT+AGG + chr6_3:15109661-15109680 None:intergenic 30.0%
ATGAAATATAGGACATCTCA+AGG - chr6_3:15109661-15109680 Msa0941320:CDS 30.0%
! GTAATAGGAAAATTAGTCTC+CGG - chr6_3:15109747-15109766 Msa0941320:intron 30.0%
! ACTGACACTTTACGATTTTA+CGG - chr6_3:15109849-15109868 Msa0941320:intron 30.0%
!!! TAAAGGACTATTTTGACAGA+CGG - chr6_3:15109895-15109914 Msa0941320:intron 30.0%
TTGAAATTGCAAGTCCTATA+AGG - chr6_3:15110059-15110078 Msa0941320:intron 30.0%
TTTAAGCTATCAGTCCTTAT+AGG + chr6_3:15110076-15110095 None:intergenic 30.0%
! TTTTCACTTCCAATGCTATA+TGG - chr6_3:15110100-15110119 Msa0941320:intron 30.0%
ATAAACCATTTGATCATGGT+TGG - chr6_3:15110130-15110149 Msa0941320:intron 30.0%
TCTGGTACAAGATTGAAAAT+TGG - chr6_3:15110183-15110202 Msa0941320:intron 30.0%
CTGGTACAAGATTGAAAATT+GGG - chr6_3:15110184-15110203 Msa0941320:intron 30.0%
!! TCTATATTTCTGGTAGAAGA+TGG - chr6_3:15110281-15110300 Msa0941320:intron 30.0%
AATCAGAAATATAGTGCATC+AGG - chr6_3:15110334-15110353 Msa0941320:intron 30.0%
TAAAAATCTACCAAACCGAT+CGG - chr6_3:15110372-15110391 Msa0941320:CDS 30.0%
TTACAATTCATGCAGTTACA+TGG - chr6_3:15110850-15110869 Msa0941320:intron 30.0%
AACCAAGATTAATAACTGCA+TGG - chr6_3:15111005-15111024 Msa0941320:CDS 30.0%
TTCCATGCAGTTATTAATCT+TGG + chr6_3:15111010-15111029 None:intergenic 30.0%
!!! CTTTTGCATTGTGTTACTTT+CGG - chr6_3:15111160-15111179 Msa0941320:intron 30.0%
ACTTGAAGACGAAACAAAAT+AGG + chr6_3:15111191-15111210 None:intergenic 30.0%
! TTTGTCTAACATGAGTTTTC+AGG - chr6_3:15111214-15111233 Msa0941320:intron 30.0%
! TTGTCTAACATGAGTTTTCA+GGG - chr6_3:15111215-15111234 Msa0941320:intron 30.0%
GTACCAAATTCAAAATAGAG+AGG - chr6_3:15111271-15111290 Msa0941320:intron 30.0%
!! TGACCTCTCTATTTTGAATT+TGG + chr6_3:15111277-15111296 None:intergenic 30.0%
! TTCTGAGAATCTATTCAAGA+AGG - chr6_3:15111310-15111329 Msa0941320:intron 30.0%
GCAATAATTATTACAGCTCT+TGG - chr6_3:15111332-15111351 Msa0941320:intron 30.0%
ATATGGCTTTCTAACTAGTT+CGG - chr6_3:15111555-15111574 Msa0941320:intron 30.0%
ACTTAAAACAACGACGAATA+TGG + chr6_3:15111677-15111696 None:intergenic 30.0%
!! AAGTTCACTCCTTTTGTTTA+TGG - chr6_3:15111693-15111712 Msa0941320:intron 30.0%
!! GTTTTTGATGATCTTTGAGA+AGG - chr6_3:15111874-15111893 Msa0941320:five_prime_UTR 30.0%
ACTATAAATTGTGTGAGGTG+TGG + chr6_3:15107830-15107849 None:intergenic 35.0%
TAGAAAACAGTTTCCAAAGG+AGG - chr6_3:15107849-15107868 Msa0941320:three_prime_UTR 35.0%
!! CTACCTGTTCAAGTTTGTTA+TGG + chr6_3:15107965-15107984 None:intergenic 35.0%
CATAACAAACTTGAACAGGT+AGG - chr6_3:15107963-15107982 Msa0941320:exon 35.0%
!!! TACTTTGGTTTTCAGCTTCT+TGG - chr6_3:15107996-15108015 Msa0941320:CDS 35.0%
TAGTCACTGTACTTGTACTT+TGG - chr6_3:15108021-15108040 Msa0941320:CDS 35.0%
GAGCTGCAATATCATTATTC+TGG + chr6_3:15108287-15108306 None:intergenic 35.0%
GCGTTCTTACCATTATTACT+AGG + chr6_3:15108542-15108561 None:intergenic 35.0%
!! TTCTCTTCTTCAGGTTTTCA+TGG - chr6_3:15108603-15108622 Msa0941320:intron 35.0%
ATTCAGATTGACCATTTCCT+TGG + chr6_3:15108849-15108868 None:intergenic 35.0%
! TGATTTTAAGCGTCATTTGC+AGG + chr6_3:15108970-15108989 None:intergenic 35.0%
GCAAATGACGCTTAAAATCA+TGG - chr6_3:15108970-15108989 Msa0941320:CDS 35.0%
TCATGGATATTTGCGTTTAG+TGG - chr6_3:15108987-15109006 Msa0941320:CDS 35.0%
GATGGTTGACGAATATAACA+AGG + chr6_3:15109033-15109052 None:intergenic 35.0%
CATAAACCAAGAATCTCTTG+TGG - chr6_3:15109226-15109245 Msa0941320:intron 35.0%
ATATTGAACCACTAACACCT+TGG + chr6_3:15109367-15109386 None:intergenic 35.0%
GGAGTTTGAAAAGACAAAAC+AGG + chr6_3:15109466-15109485 None:intergenic 35.0%
! TTTTCAAACTCCACTCTTGT+CGG - chr6_3:15109474-15109493 Msa0941320:intron 35.0%
! CAGTTATATTCTTTTGTCGG+AGG - chr6_3:15109546-15109565 Msa0941320:intron 35.0%
GACATCACTGACATGTTATT+AGG - chr6_3:15109578-15109597 Msa0941320:intron 35.0%
TAGTGAGCTGACATTGATAT+GGG + chr6_3:15109626-15109645 None:intergenic 35.0%
ATATCAATGTCAGCTCACTA+GGG - chr6_3:15109626-15109645 Msa0941320:CDS 35.0%
ATTTCTCCATGAGAGAACTA+AGG - chr6_3:15109725-15109744 Msa0941320:CDS 35.0%
! CTATTACCTTAGTTCTCTCA+TGG + chr6_3:15109734-15109753 None:intergenic 35.0%
CATGAGAGAACTAAGGTAAT+AGG - chr6_3:15109732-15109751 Msa0941320:CDS 35.0%
! TTTTACCATCGGACACTATA+AGG + chr6_3:15109808-15109827 None:intergenic 35.0%
ATATTGGCATCAGTGAACAT+TGG - chr6_3:15110025-15110044 Msa0941320:intron 35.0%
ATCTTTGCTCCATATAGCAT+TGG + chr6_3:15110112-15110131 None:intergenic 35.0%
ATTCTCCAACCATGATCAAA+TGG + chr6_3:15110138-15110157 None:intergenic 35.0%
ATTTGATCATGGTTGGAGAA+TGG - chr6_3:15110137-15110156 Msa0941320:intron 35.0%
GCTTATAACACCAATGTTTC+TGG - chr6_3:15110165-15110184 Msa0941320:intron 35.0%
CAATCTTGTACCAGAAACAT+TGG + chr6_3:15110178-15110197 None:intergenic 35.0%
ACTAGTCAGTATCATCATCT+AGG - chr6_3:15110240-15110259 Msa0941320:intron 35.0%
GTTCAATTGAATGAACCGAT+CGG + chr6_3:15110390-15110409 None:intergenic 35.0%
! CGTGTGTTTAATGGTTCTAT+CGG + chr6_3:15110551-15110570 None:intergenic 35.0%
TGAGACTTTCGTGTGTTTAA+TGG + chr6_3:15110560-15110579 None:intergenic 35.0%
! ATTTTTCATATGCAGCATGC+AGG - chr6_3:15110652-15110671 Msa0941320:intron 35.0%
TTCTTGATCTACATACTTGG+TGG - chr6_3:15110757-15110776 Msa0941320:intron 35.0%
GATAAATGTGTATCGTTAGC+TGG + chr6_3:15110942-15110961 None:intergenic 35.0%
TGATGCAAATGTTGTGTAAC+TGG - chr6_3:15111129-15111148 Msa0941320:CDS 35.0%
! CATTTGCAATAATTGGTGCT+TGG - chr6_3:15111243-15111262 Msa0941320:intron 35.0%
GGTTTCATATTATGCAACCT+TGG - chr6_3:15111353-15111372 Msa0941320:intron 35.0%
!! TTTGGTGGTGATTCATTTGT+AGG - chr6_3:15111500-15111519 Msa0941320:intron 35.0%
ATTCATTTGTAGGTCACACT+CGG - chr6_3:15111510-15111529 Msa0941320:intron 35.0%
TTCCAAAGGAGGCTTATAAG+AGG - chr6_3:15107860-15107879 Msa0941320:three_prime_UTR 40.0%
TACCTCTTATAAGCCTCCTT+TGG + chr6_3:15107865-15107884 None:intergenic 40.0%
AGCCCATAACAAACTTGAAC+AGG - chr6_3:15107959-15107978 Msa0941320:three_prime_UTR 40.0%
GTAGGTCCAGTATTGTACTT+TGG - chr6_3:15107981-15108000 Msa0941320:CDS 40.0%
!! CTGAACACGTATTTTTGTCG+CGG + chr6_3:15108704-15108723 None:intergenic 40.0%
TCTTAGTTTCTTCTCAGCAG+AGG + chr6_3:15108743-15108762 None:intergenic 40.0%
TGTTTCCGATGCATCAAATG+AGG - chr6_3:15108810-15108829 Msa0941320:intron 40.0%
CATCACCTCATTTGATGCAT+CGG + chr6_3:15108818-15108837 None:intergenic 40.0%
ATGAATGTGCACCAAGGAAA+TGG - chr6_3:15108835-15108854 Msa0941320:intron 40.0%
GAGTCTCTTGATGAGTATCT+TGG - chr6_3:15108883-15108902 Msa0941320:intron 40.0%
GGATATTTGCGTTTAGTGGA+TGG - chr6_3:15108991-15109010 Msa0941320:CDS 40.0%
AGTGGATGGTTAATGAGTTG+TGG - chr6_3:15109005-15109024 Msa0941320:CDS 40.0%
AAGATGCCACAAGAGATTCT+TGG + chr6_3:15109235-15109254 None:intergenic 40.0%
! AGAAGAATCCAAGGTGTTAG+TGG - chr6_3:15109356-15109375 Msa0941320:intron 40.0%
GACTTACATGAGGTAAAGAC+TGG + chr6_3:15109426-15109445 None:intergenic 40.0%
ACAGGAATTTATGACAGGTC+AGG + chr6_3:15109448-15109467 None:intergenic 40.0%
CACTGACATGTTATTAGGAC+AGG - chr6_3:15109583-15109602 Msa0941320:intron 40.0%
CTAGTGAGCTGACATTGATA+TGG + chr6_3:15109627-15109646 None:intergenic 40.0%
CATATCAATGTCAGCTCACT+AGG - chr6_3:15109625-15109644 Msa0941320:CDS 40.0%
! AAAATTAGTCTCCGGTGTGA+TGG - chr6_3:15109755-15109774 Msa0941320:intron 40.0%
GACAGACGGTTACAATTATG+AGG - chr6_3:15109909-15109928 Msa0941320:intron 40.0%
TGTTGTTATATCTGGTGCAG+AGG - chr6_3:15110001-15110020 Msa0941320:intron 40.0%
! TATCTGGTGCAGAGGTATAT+TGG - chr6_3:15110009-15110028 Msa0941320:intron 40.0%
ATTGAATGAACCGATCGGTT+TGG + chr6_3:15110385-15110404 None:intergenic 40.0%
ATTCAATTGAACCGAGAACC+AGG - chr6_3:15110398-15110417 Msa0941320:CDS 40.0%
AAACCATCCGATTAATGACC+TGG + chr6_3:15110419-15110438 None:intergenic 40.0%
TTAATCGGATGGTTTCATGC+CGG - chr6_3:15110424-15110443 Msa0941320:CDS 40.0%
TAAACACACGAAAGTCTCAC+CGG - chr6_3:15110561-15110580 Msa0941320:intron 40.0%
GCATGCAGGAATATTTCACA+TGG - chr6_3:15110666-15110685 Msa0941320:intron 40.0%
TTGAGGCCCAAATGATACAA+GGG + chr6_3:15110707-15110726 None:intergenic 40.0%
! TACATACTTGGTGGAGTTTC+TGG - chr6_3:15110766-15110785 Msa0941320:intron 40.0%
! CTCAGCCGTCAATTTAAGAT+AGG - chr6_3:15110916-15110935 Msa0941320:CDS 40.0%
! GCTGGCCTATCTTAAATTGA+CGG + chr6_3:15110924-15110943 None:intergenic 40.0%
GGACCTGCATTTGCAATAAT+TGG - chr6_3:15111236-15111255 Msa0941320:intron 40.0%
GCACCAATTATTGCAAATGC+AGG + chr6_3:15111242-15111261 None:intergenic 40.0%
CATGCATACCACTCATCAAT+TGG + chr6_3:15111380-15111399 None:intergenic 40.0%
CAATTGATGAGTGGTATGCA+TGG - chr6_3:15111378-15111397 Msa0941320:intron 40.0%
TTCATTTGTAGGTCACACTC+GGG - chr6_3:15111511-15111530 Msa0941320:intron 40.0%
AGAAGGAACTTATCAACCCA+TGG - chr6_3:15111891-15111910 Msa0941320:five_prime_UTR 40.0%
CCATATCAATGCCATCACAC+CGG + chr6_3:15109769-15109788 None:intergenic 45.0%
!! CGGTGTGATGGCATTGATAT+GGG - chr6_3:15109767-15109786 Msa0941320:intron 45.0%
TGATCATGGTTGGAGAATGG+TGG - chr6_3:15110140-15110159 Msa0941320:intron 45.0%
! CCGATTAATGACCTGGTTCT+CGG + chr6_3:15110412-15110431 None:intergenic 45.0%
CCGAGAACCAGGTCATTAAT+CGG - chr6_3:15110409-15110428 Msa0941320:CDS 45.0%
GAACCAGGTCATTAATCGGA+TGG - chr6_3:15110413-15110432 Msa0941320:CDS 45.0%
GGTTGAACTAGAGTTAGGCA+GGG - chr6_3:15110461-15110480 Msa0941320:CDS 45.0%
!! TTCACATGGCTCTGAGTTGT+TGG - chr6_3:15110680-15110699 Msa0941320:intron 45.0%
!! TCACATGGCTCTGAGTTGTT+GGG - chr6_3:15110681-15110700 Msa0941320:intron 45.0%
TGTTGGGCCCTTGTATCATT+TGG - chr6_3:15110697-15110716 Msa0941320:intron 45.0%
GTTGGGCCCTTGTATCATTT+GGG - chr6_3:15110698-15110717 Msa0941320:intron 45.0%
CTTGAGGCCCAAATGATACA+AGG + chr6_3:15110708-15110727 None:intergenic 45.0%
TTTGGGCCTCAAGTTTGCAA+AGG - chr6_3:15110715-15110734 Msa0941320:intron 45.0%
CCATAGCCTTTGCAAACTTG+AGG + chr6_3:15110724-15110743 None:intergenic 45.0%
CCTCAAGTTTGCAAAGGCTA+TGG - chr6_3:15110721-15110740 Msa0941320:intron 45.0%
CATACACCAGATCCAACTGT+TGG - chr6_3:15110808-15110827 Msa0941320:intron 45.0%
ACCTTGGTCCAATTGATGAG+TGG - chr6_3:15111369-15111388 Msa0941320:intron 45.0%
ACCACTCATCAATTGGACCA+AGG + chr6_3:15111373-15111392 None:intergenic 45.0%
AAGTTTCAGTCCTTCTCCAC+CGG + chr6_3:15111611-15111630 None:intergenic 45.0%
GAGGGGGATCCATAAACAAA+AGG + chr6_3:15111705-15111724 None:intergenic 45.0%
AGATGCCAATGCATTGAGAG+GGG + chr6_3:15111722-15111741 None:intergenic 45.0%
CAGATGCCAATGCATTGAGA+GGG + chr6_3:15111723-15111742 None:intergenic 45.0%
ACAGATGCCAATGCATTGAG+AGG + chr6_3:15111724-15111743 None:intergenic 45.0%
TGAAGTAGCTGTTGTAGCCT+TGG - chr6_3:15111747-15111766 Msa0941320:five_prime_UTR 45.0%
!!! TAAATTTTTTATTACTTTTA+AGG + chr6_3:15111100-15111119 None:intergenic 5.0%
!! GAAAAATATAAATATTTATT+TGG - chr6_3:15111482-15111501 Msa0941320:intron 5.0%
GAGGTGATGAATGTGCACCA+AGG - chr6_3:15108829-15108848 Msa0941320:intron 50.0%
GACAGGTCAGGACTTACATG+AGG + chr6_3:15109436-15109455 None:intergenic 50.0%
!! CCGGTGTGATGGCATTGATA+TGG - chr6_3:15109766-15109785 Msa0941320:intron 50.0%
! GCATTGATATGGGATCGACG+TGG - chr6_3:15109777-15109796 Msa0941320:intron 50.0%
TTGATATGGGATCGACGTGG+AGG - chr6_3:15109780-15109799 Msa0941320:intron 50.0%
! AGGAGCCTTATAGTGTCCGA+TGG - chr6_3:15109800-15109819 Msa0941320:intron 50.0%
TCATGGTTGGAGAATGGTGG+AGG - chr6_3:15110143-15110162 Msa0941320:intron 50.0%
! CATGCCGGTTACATTGTGCT+CGG - chr6_3:15110439-15110458 Msa0941320:CDS 50.0%
! ATGCCGGTTACATTGTGCTC+GGG - chr6_3:15110440-15110459 Msa0941320:CDS 50.0%
CAACCCGAGCACAATGTAAC+CGG + chr6_3:15110446-15110465 None:intergenic 50.0%
!! GCTCGGGTTGAACTAGAGTT+AGG - chr6_3:15110456-15110475 Msa0941320:CDS 50.0%
GGGTTGAACTAGAGTTAGGC+AGG - chr6_3:15110460-15110479 Msa0941320:CDS 50.0%
ACACCAGATCCAACTGTTGG+TGG - chr6_3:15110811-15110830 Msa0941320:intron 50.0%
CTTACAGTGCCACCAACAGT+TGG + chr6_3:15110823-15110842 None:intergenic 50.0%
GCTTTCACAGGCATGGCATA+TGG - chr6_3:15111538-15111557 Msa0941320:intron 50.0%
AACTAGTTCGGCTCTTCAGC+AGG - chr6_3:15111567-15111586 Msa0941320:intron 50.0%
GATGCCAATGCATTGAGAGG+GGG + chr6_3:15111721-15111740 None:intergenic 50.0%
TCCACTCTTGTCGGCAGTGA+CGG - chr6_3:15109483-15109502 Msa0941320:intron 55.0%
GTGCCACCAACAGTTGGATC+TGG + chr6_3:15110817-15110836 None:intergenic 55.0%
GGATCCCCCTCTCAATGCAT+TGG - chr6_3:15111714-15111733 Msa0941320:intron 55.0%
TCCGTCACTGCCGACAAGAG+TGG + chr6_3:15109487-15109506 None:intergenic 60.0%
CACTCGGGAGCAGCTTTCAC+AGG - chr6_3:15111526-15111545 Msa0941320:intron 60.0%
GGGAGCAGCTTTCACAGGCA+TGG - chr6_3:15111531-15111550 Msa0941320:intron 60.0%
GACGCGACATCACCAGGAAC+CGG - chr6_3:15111589-15111608 Msa0941320:intron 60.0%
TCACCAGGAACCGGTGGAGA+AGG - chr6_3:15111598-15111617 Msa0941320:intron 60.0%
!! AGTCCTTCTCCACCGGTTCC+TGG + chr6_3:15111604-15111623 None:intergenic 60.0%
CAGCAGGACGCGACATCACC+AGG - chr6_3:15111583-15111602 Msa0941320:intron 65.0%
GCGACATCACCAGGAACCGG+TGG - chr6_3:15111592-15111611 Msa0941320:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 15107813 15111960 15107813 ID=Msa0941320;Name=Msa0941320
chr6_3 mRNA 15107813 15111960 15107813 ID=Msa0941320-mRNA-1;Parent=Msa0941320;Name=Msa0941320-mRNA-1;_AED=0.24;_eAED=0.24;_QI=249|1|1|1|0.83|0.71|7|168|424
chr6_3 exon 15107813 15108251 15107813 ID=Msa0941320-mRNA-1:exon:4623;Parent=Msa0941320-mRNA-1
chr6_3 exon 15108383 15108537 15108383 ID=Msa0941320-mRNA-1:exon:4622;Parent=Msa0941320-mRNA-1
chr6_3 exon 15108936 15109106 15108936 ID=Msa0941320-mRNA-1:exon:4621;Parent=Msa0941320-mRNA-1
chr6_3 exon 15109587 15109752 15109587 ID=Msa0941320-mRNA-1:exon:4620;Parent=Msa0941320-mRNA-1
chr6_3 exon 15110335 15110548 15110335 ID=Msa0941320-mRNA-1:exon:4619;Parent=Msa0941320-mRNA-1
chr6_3 exon 15110854 15111157 15110854 ID=Msa0941320-mRNA-1:exon:4618;Parent=Msa0941320-mRNA-1
chr6_3 exon 15111718 15111960 15111718 ID=Msa0941320-mRNA-1:exon:4617;Parent=Msa0941320-mRNA-1
chr6_3 five_prime_UTR 15111718 15111960 15111718 ID=Msa0941320-mRNA-1:five_prime_utr;Parent=Msa0941320-mRNA-1
chr6_3 five_prime_UTR 15111152 15111157 15111152 ID=Msa0941320-mRNA-1:five_prime_utr;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15110854 15111151 15110854 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15110335 15110548 15110335 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15109587 15109752 15109587 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15108936 15109106 15108936 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15108383 15108537 15108383 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 CDS 15107981 15108251 15107981 ID=Msa0941320-mRNA-1:cds;Parent=Msa0941320-mRNA-1
chr6_3 three_prime_UTR 15107813 15107980 15107813 ID=Msa0941320-mRNA-1:three_prime_utr;Parent=Msa0941320-mRNA-1
Gene Sequence

>Msa0941320

ATGGCTGCATTTTCAGTATGTTACAGAACACCTTACAAGAACACATGCATAATTCTTGGCAGAGATTCTCTGTACAAGACCGCGACAAAAATACGTGTTCAGTGTTCATCAGAGTCTACCTCTGCTGAGAAGAAACTAAGATCATTAGATTCTTATTTTGGAAAACTACAACATAATACAAAATTACATGTTTCCGATGCATCAAATGAGGTGATGAATGTGCACCAAGGAAATGGTCAATCTGAATCAAAACATGAACTTGAGTCTCTTGATGAGTATCTTGGCAAAGTAAATAAAGGCATAAACCAAGAATCTCTTGTGGCATCTTATGTTGAAAATTCTAAGGATGAAAGTTTAGCTCCAAAACAAATTATCAGCCAAGATACTCAAAGAACAAATTTTAGGAAACCAAATACTTATGTCAATATAAGAAGAATCCAAGGTGTTAGTGGTTCAATATCTGCTATAGATTCAAATGATCAGCTAAACGATACATCCAGTCTTTACCTCATAGGTATATTGGCATCAGTGAACATTGGAGTGTTTCTATTTGAAATTGCAAGTCCTATAAGGACTGATAGCTTAAAGCTATTTTCACTTCCAATGCTATATGGAGCAAAGATAAACCATTTGATCATGGTTGGAGAATGGTGGAGGCTTATAACACCAATGTTTCTGCATGCAGGAATATTTCACATGGCTCTGAGTTGTTGGGCCCTTGTATCATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCTACATACTTGGTGGAGTTTCTGGCAACTTTGCAAGTTTTCTACATACACCAGATCCAACTGTTGGTGGCACTGGACCTGCATTTGCAATAATTGGTGCTTGGCTCATGTACCAAATTCAAAATAGAGAGGTCATAGAAAATCATGATTCTGAGAATCTATTCAAGAAGGCAATAATTATTACAGCTCTTGGTTTCATATTATGCAACCTTGGTCCAATTGATGAGTGGTCACACTCGGGAGCAGCTTTCACAGGCATGGCATATGGCTTTCTAACTAGTTCGGCTCTTCAGCAGGACGCGACATCACCAGGAACCGGTGGAGAAGGACTGAAACTTGTTACAAAATACGGTGCTTCATGCAAATCACTTGTTATCTTCGCCATATTCGTCGTTGTTTTAAGTTCACTCCTTTTGTTTATGGATCCCCCTCTCAATGCATTGGCATCTGTTGATGAAGTAGCTGTTGTAGCCTTGGAATATATGTCAATACTTTGTTGA

Protein sequence

>Msa0941320

MAAFSVCYRTPYKNTCIILGRDSLYKTATKIRVQCSSESTSAEKKLRSLDSYFGKLQHNTKLHVSDASNEVMNVHQGNGQSESKHELESLDEYLGKVNKGINQESLVASYVENSKDESLAPKQIISQDTQRTNFRKPNTYVNIRRIQGVSGSISAIDSNDQLNDTSSLYLIGILASVNIGVFLFEIASPIRTDSLKLFSLPMLYGAKINHLIMVGEWWRLITPMFLHAGIFHMALSCWALVSFGPQVCKGYGSFTFFLIYILGGVSGNFASFLHTPDPTVGGTGPAFAIIGAWLMYQIQNREVIENHDSENLFKKAIIITALGFILCNLGPIDEWSHSGAAFTGMAYGFLTSSALQQDATSPGTGGEGLKLVTKYGASCKSLVIFAIFVVVLSSLLLFMDPPLNALASVDEVAVVALEYMSILC*