AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1421490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421490 MtrunA17_Chr3g0120131 93.375 483 23 2 1 474 1 483 0.0 935
Msa1421490 MtrunA17_Chr3g0119721 96.716 335 11 0 140 474 11 345 0.0 682
Msa1421490 MtrunA17_Chr3g0131051 63.802 384 137 1 90 473 110 491 4.25e-178 508
Msa1421490 MtrunA17_Chr7g0265451 56.136 383 158 2 90 470 138 512 1.44e-160 464
Msa1421490 MtrunA17_Chr7g0265461 54.146 410 169 3 64 471 4 396 6.99e-160 458
Msa1421490 MtrunA17_Chr1g0179651 61.607 336 128 1 139 473 4 339 5.86e-156 446
Msa1421490 MtrunA17_Chr3g0137491 59.172 338 135 2 137 471 52 389 5.53e-146 422
Msa1421490 MtrunA17_Chr4g0064471 51.546 388 180 3 89 470 82 467 2.96e-141 414
Msa1421490 MtrunA17_Chr4g0064411 50.382 393 185 6 85 471 72 460 2.59e-134 395
Msa1421490 MtrunA17_Chr4g0064461 48.969 388 189 4 89 470 78 462 2.60e-128 380
Msa1421490 MtrunA17_Chr1g0146181 45.663 392 195 5 82 469 206 583 3.76e-109 335
Msa1421490 MtrunA17_Chr4g0055991 46.240 359 183 5 119 470 178 533 3.28e-108 331
Msa1421490 MtrunA17_Chr7g0265381 44.357 381 195 5 93 469 3 370 9.71e-108 324
Msa1421490 MtrunA17_Chr1g0197381 43.915 378 193 7 99 470 181 545 4.09e-105 323
Msa1421490 MtrunA17_Chr8g0390121 42.494 393 207 6 82 469 228 606 4.43e-105 325
Msa1421490 MtrunA17_Chr3g0140131 46.221 344 178 3 130 469 250 590 7.91e-104 322
Msa1421490 MtrunA17_Chr3g0140141 42.706 377 199 5 97 469 185 548 4.02e-101 313
Msa1421490 MtrunA17_Chr5g0411991 35.838 346 206 6 128 467 74 409 7.07e-71 231
Msa1421490 MtrunA17_Chr7g0253441 33.967 368 216 10 118 473 129 481 3.61e-56 194
Msa1421490 MtrunA17_Chr3g0119731 91.892 74 6 0 66 139 1 74 1.44e-42 145
Msa1421490 MtrunA17_Chr5g0421571 35.211 213 125 5 128 337 127 329 3.11e-31 123
Msa1421490 MtrunA17_Chr8g0385671 26.433 314 197 7 175 464 81 384 5.95e-28 115
Msa1421490 MtrunA17_Chr8g0385651 27.010 311 199 8 175 464 81 384 4.73e-27 112
Msa1421490 MtrunA17_Chr2g0320251 28.354 328 188 14 144 438 85 398 1.61e-23 102
Msa1421490 MtrunA17_Chr4g0028201 26.836 354 210 14 146 464 105 444 6.78e-23 101
Msa1421490 MtrunA17_Chr3g0092341 29.316 307 185 12 177 460 169 466 1.30e-21 97.4
Msa1421490 MtrunA17_Chr6g0460631 26.578 301 198 10 178 464 174 465 1.63e-19 91.3
Msa1421490 MtrunA17_Chr8g0377331 25.987 304 206 8 170 460 97 394 4.60e-19 89.4
Msa1421490 MtrunA17_Chr4g0043801 24.825 286 185 10 185 450 158 433 3.07e-17 84.0
Msa1421490 MtrunA17_Chr3g0122631 25.939 293 194 10 187 464 116 400 1.92e-16 81.3
Msa1421490 MtrunA17_Chr7g0254391 25.510 294 192 10 187 464 188 470 2.06e-15 78.6
Msa1421490 MtrunA17_Chr5g0436111 29.167 192 107 5 108 294 14 181 8.42e-14 72.0
Msa1421490 MtrunA17_Chr4g0039811 25.877 228 148 8 239 450 224 446 1.50e-11 66.6
Msa1421490 MtrunA17_Chr1g0159421 27.612 268 165 12 179 429 118 373 2.20e-11 65.9
Msa1421490 MtrunA17_Chr1g0200871 25.839 298 182 10 187 449 139 432 2.51e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421490 AT3G07620.1 67.717 381 122 1 92 471 76 456 0.0 554
Msa1421490 AT5G03795.1 57.513 386 158 1 89 474 137 516 5.40e-157 456
Msa1421490 AT5G25310.1 52.062 388 174 5 88 471 98 477 1.21e-143 420
Msa1421490 AT5G11130.1 51.020 392 176 6 92 473 91 476 3.62e-138 406
Msa1421490 AT5G11130.2 53.293 334 150 3 144 473 1 332 1.57e-128 376
Msa1421490 AT5G20260.2 47.722 417 200 7 58 471 62 463 5.25e-127 377
Msa1421490 AT3G42180.1 51.261 357 165 2 124 471 110 466 3.69e-126 375
Msa1421490 AT5G33290.1 50.139 361 169 3 120 471 138 496 7.31e-123 368
Msa1421490 AT3G42180.4 50.742 337 157 2 144 471 1 337 4.43e-117 347
Msa1421490 AT4G16745.1 46.354 384 189 6 94 470 156 529 6.15e-116 352
Msa1421490 AT5G20260.3 50.298 336 164 3 139 471 23 358 1.82e-114 341
Msa1421490 AT5G20260.1 50.453 331 161 3 144 471 1 331 3.13e-114 340
Msa1421490 AT4G32790.1 44.503 382 194 6 93 469 222 590 1.14e-105 327
Msa1421490 AT4G32790.3 44.503 382 194 6 93 469 222 590 1.14e-105 327
Msa1421490 AT4G32790.2 44.503 382 194 6 93 469 222 590 1.14e-105 327
Msa1421490 AT5G19670.1 44.348 345 184 3 130 469 263 604 5.38e-105 325
Msa1421490 AT5G19670.2 44.348 345 184 3 130 469 263 604 5.38e-105 325
Msa1421490 AT4G16745.2 44.744 371 188 6 94 457 156 516 8.36e-105 324
Msa1421490 AT5G37000.1 38.741 413 231 6 75 469 140 548 2.28e-97 304
Msa1421490 AT5G25820.1 42.040 402 211 9 76 469 262 649 3.96e-97 306
Msa1421490 AT5G11610.1 39.948 383 211 8 92 469 174 542 4.85e-95 298
Msa1421490 AT4G38040.1 35.549 346 207 6 128 467 84 419 1.98e-66 219
Msa1421490 AT5G11610.2 37.024 289 164 7 92 376 174 448 7.47e-59 201
Msa1421490 AT4G38040.2 34.161 322 196 6 128 443 84 395 7.91e-54 186
Msa1421490 AT5G11610.3 37.952 166 91 3 92 255 174 329 1.00e-30 122
Msa1421490 AT1G27440.1 26.537 309 203 7 175 464 77 380 4.91e-28 115
Msa1421490 AT5G61840.1 25.217 345 220 9 148 464 49 383 2.57e-25 108
Msa1421490 AT2G28110.1 26.367 311 200 10 187 474 138 442 1.58e-21 97.4
Msa1421490 AT1G74680.1 28.522 291 190 8 182 460 144 428 4.14e-21 96.3
Msa1421490 AT1G67410.1 27.211 294 196 9 181 460 113 402 6.81e-21 95.1
Msa1421490 AT5G22940.1 25.078 319 200 11 179 470 146 452 2.94e-19 90.5
Msa1421490 AT5G22940.2 25.078 319 200 11 179 470 175 481 2.97e-19 90.9
Msa1421490 AT3G45400.1 27.304 293 188 8 187 464 154 436 1.67e-18 88.2
Msa1421490 AT2G35100.1 24.912 285 181 10 185 450 125 395 4.43e-18 87.0
Msa1421490 AT3G03650.1 27.667 300 189 11 182 465 188 475 5.30e-17 84.0
Msa1421490 AT5G16890.1 24.211 285 186 11 183 450 181 452 7.62e-14 73.9
Msa1421490 AT5G44930.2 27.632 228 131 11 238 446 175 387 1.44e-12 69.7
Msa1421490 AT5G44930.1 27.632 228 131 11 238 446 175 387 1.44e-12 69.7
Msa1421490 AT1G34270.1 28.814 236 138 10 239 449 195 425 5.23e-11 65.1

Find 85 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCATTGATCTTCTTAT+AGG 0.128865 tig0025053:-56984 None:intergenic
GGGAATATTTATCAACTTAT+TGG 0.144366 tig0025053:+58353 Msa1421490:CDS
CCTGTTACCAAATTGATTTC+AGG 0.158016 tig0025053:-58796 None:intergenic
AACATGGAACAGAACAATTT+TGG 0.172114 tig0025053:+58849 Msa1421490:CDS
TATCACACAAATATGCTTAT+TGG 0.232545 tig0025053:+58529 Msa1421490:CDS
ATCATTTCCTGAAATCAATT+TGG 0.239355 tig0025053:+58789 Msa1421490:CDS
TAAATTGCCTCAACAATTCT+TGG 0.244588 tig0025053:-59045 None:intergenic
CCTGAAATCAATTTGGTAAC+AGG 0.246714 tig0025053:+58796 Msa1421490:CDS
GGAAATGATGCATCTTTCTT+TGG 0.250368 tig0025053:-58775 None:intergenic
TATTCGTGACAAAGCTGTTT+TGG 0.263997 tig0025053:+58476 Msa1421490:CDS
ACAGCTTTGTCACGAATAAC+TGG 0.273001 tig0025053:-58471 None:intergenic
TATTGTTGTGATATTATAAT+AGG 0.275605 tig0025053:-59081 None:intergenic
ATATGATTATTCATTCTATA+TGG 0.288339 tig0025053:+59295 Msa1421490:CDS
TACTCATCTTCATTGTTTCA+TGG 0.291583 tig0025053:-58984 None:intergenic
AGGATCATAACAACACTAAA+TGG 0.293875 tig0025053:-58432 None:intergenic
TACAATGGAGAATTGAATTT+AGG 0.295142 tig0025053:+56951 Msa1421490:CDS
TCATGCTTTCTTGTCATGAT+TGG 0.298264 tig0025053:+58577 Msa1421490:CDS
TTGATAATTCAATGAGTAAT+GGG 0.306989 tig0025053:-56752 None:intergenic
ATTCATTTGATGGTGCAAAA+TGG 0.309805 tig0025053:+56704 Msa1421490:CDS
ATATAGGAGTTACCACTTAA+TGG 0.323102 tig0025053:+58245 Msa1421490:intron
AATGCAAGGAGATAGAAATT+TGG 0.324834 tig0025053:+56998 Msa1421490:CDS
TTTGGTATTGATTCATTTGA+TGG 0.334257 tig0025053:+56694 Msa1421490:CDS
CATGCTTTCTTGTCATGATT+GGG 0.337722 tig0025053:+58578 Msa1421490:CDS
AACAAAATTTCCTTAAGCTT+GGG 0.346625 tig0025053:-59171 None:intergenic
TAAATTCAATTCTCCATTGT+AGG 0.358796 tig0025053:-56949 None:intergenic
TAGTGAAATTCCCAAGCTTA+AGG 0.365820 tig0025053:+59161 Msa1421490:CDS
TGAAATACATCATATCTCTT+AGG 0.369121 tig0025053:-59273 None:intergenic
CAATCAAGAACATCACTAAA+AGG 0.369286 tig0025053:-59111 None:intergenic
CAACAAAATTTCCTTAAGCT+TGG 0.385217 tig0025053:-59172 None:intergenic
AAGTAGACATGAGCTTCATT+TGG 0.398848 tig0025053:-58405 None:intergenic
TTCACATACCATGTTGCCCT+TGG 0.411752 tig0025053:-58691 None:intergenic
AGAAATTTGGAGAAGGTTGA+AGG 0.417058 tig0025053:+57011 Msa1421490:CDS
TAAATAGCTTCTCCATTAAG+TGG 0.424602 tig0025053:-58257 None:intergenic
GCTTATTGGAATAGAAGTTA+TGG 0.446862 tig0025053:+58543 Msa1421490:CDS
TTATTCATTCTATATGGCTT+AGG 0.447096 tig0025053:+59301 Msa1421490:CDS
TATCTTTGTTCTTCCAATGT+TGG 0.453246 tig0025053:-58918 None:intergenic
TAAAATCTTTGTGTATGAAG+AGG 0.453499 tig0025053:+58278 Msa1421490:CDS
AAAATCTTTGTGTATGAAGA+GGG 0.454200 tig0025053:+58279 Msa1421490:CDS
TTTGATAATTCAATGAGTAA+TGG 0.455088 tig0025053:-56753 None:intergenic
CATGACAAGAAAGCATGAAA+TGG 0.462671 tig0025053:-58572 None:intergenic
CTTGCCACTTCCCACCCACT+TGG 0.464582 tig0025053:-59021 None:intergenic
TTGGTAACAGGAGAAACAAC+AGG 0.474598 tig0025053:+58808 Msa1421490:CDS
TTGCAAGAATATATATTCAA+TGG 0.476651 tig0025053:+58329 Msa1421490:CDS
TTCATTTGATGGTGCAAAAT+GGG 0.482617 tig0025053:+56705 Msa1421490:CDS
AAGAGGCAGTACGGTGTCAT+TGG 0.482673 tig0025053:-57081 None:intergenic
TTCATTCTATATGGCTTAGG+AGG 0.491295 tig0025053:+59304 Msa1421490:CDS
GGAGAAACAACAGGTTTACT+TGG 0.502236 tig0025053:+58817 Msa1421490:CDS
AAAATTGTTCTGTTCCATGT+TGG 0.510175 tig0025053:-58847 None:intergenic
TTGTCCAAGTGGGTGGGAAG+TGG 0.510845 tig0025053:+59017 Msa1421490:CDS
ATTGTATTTGTCCAAGTGGG+TGG 0.518103 tig0025053:+59010 Msa1421490:CDS
ATACACCTTGTATGATGAAA+GGG 0.521451 tig0025053:-56803 None:intergenic
ATTCAATGAGTAATGGGGTG+TGG 0.526405 tig0025053:-56746 None:intergenic
GGGTGTGGATACATACATCT+TGG 0.534605 tig0025053:-56731 None:intergenic
TATACACCTTGTATGATGAA+AGG 0.534728 tig0025053:-56804 None:intergenic
GAAATATATAAGATTGCAAG+AGG 0.540677 tig0025053:+59209 Msa1421490:CDS
ATTACTCATTGAATTATCAA+AGG 0.556943 tig0025053:+56755 Msa1421490:CDS
CTGGGTGAAAGAGATGTTCA+AGG 0.557117 tig0025053:-58452 None:intergenic
AGGAGATAGAAATTTGGAGA+AGG 0.557354 tig0025053:+57004 Msa1421490:CDS
AATACATCATATCTCTTAGG+AGG 0.557887 tig0025053:-59270 None:intergenic
TTCCAATGTTGGAAAAGCAA+TGG 0.557955 tig0025053:-58907 None:intergenic
ATCTACCCTTTCATCATACA+AGG 0.560213 tig0025053:+56798 Msa1421490:CDS
TACTTGGTGGCTATCCAACA+TGG 0.562509 tig0025053:+58833 Msa1421490:CDS
GAAACAACAGGTTTACTTGG+TGG 0.562533 tig0025053:+58820 Msa1421490:CDS
ATTGAATATATATTCTTGCA+AGG 0.562749 tig0025053:-58327 None:intergenic
CAAGAATATATATTCAATGG+AGG 0.575833 tig0025053:+58332 Msa1421490:CDS
AGAATTCTCAAGAGGCAGTA+CGG 0.580764 tig0025053:-57090 None:intergenic
GGTGTCATTGGTTCTCAACA+AGG 0.582461 tig0025053:-57069 None:intergenic
TTGTATTTGTCCAAGTGGGT+GGG 0.588230 tig0025053:+59011 Msa1421490:CDS
AATATTGTATTTGTCCAAGT+GGG 0.593695 tig0025053:+59007 Msa1421490:CDS
ACTTTGCAATGCAAATATCT+CGG 0.598690 tig0025053:+58741 Msa1421490:CDS
ATCTTACCTATGAAAAGCAA+AGG 0.600165 tig0025053:-57150 None:intergenic
TTCTTTGCAGGACAAATGCA+TGG 0.604295 tig0025053:+58874 Msa1421490:CDS
AAGAATATATATTCAATGGA+GGG 0.605925 tig0025053:+58333 Msa1421490:CDS
GGCAAGTCCAAGAATTGTTG+AGG 0.611209 tig0025053:+59038 Msa1421490:CDS
TTTCTGTAGATGTCTCCTTG+TGG 0.615421 tig0025053:-57125 None:intergenic
AAATATTGTATTTGTCCAAG+TGG 0.615905 tig0025053:+59006 Msa1421490:CDS
TAATCATGAGAATTCTCAAG+AGG 0.616725 tig0025053:-57098 None:intergenic
CAGCTTTGTCACGAATAACT+GGG 0.619899 tig0025053:-58470 None:intergenic
TATAAGTCAATGGCCTACAA+TGG 0.620465 tig0025053:+56936 Msa1421490:intron
TATAGGGACCAAGGGCAACA+TGG 0.622985 tig0025053:+58683 Msa1421490:intron
AAGGGCAACATGGTATGTGA+AGG 0.631000 tig0025053:+58693 Msa1421490:CDS
TGATAATTCAATGAGTAATG+GGG 0.632019 tig0025053:-56751 None:intergenic
CCTATAAGAAGATCAATGCA+AGG 0.636919 tig0025053:+56984 Msa1421490:CDS
TCTCATGATTATGTTCCACA+AGG 0.658849 tig0025053:+57110 Msa1421490:CDS
AAATATATAAGATTGCAAGA+GGG 0.689156 tig0025053:+59210 Msa1421490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGTTCATAAAATAA+GGG - tig0025053:57661-57680 None:intergenic 10.0%
!! AAAAAATTGTTCATAAAATA+AGG - tig0025053:57662-57681 None:intergenic 10.0%
!!! TTATTTTATGAACAATTTTT+TGG + tig0025053:57661-57680 Msa1421490:intron 10.0%
!!! TATTTTATGAACAATTTTTT+GGG + tig0025053:57662-57681 Msa1421490:intron 10.0%
!! TAATATATGAAATTCTTAAA+AGG - tig0025053:58089-58108 None:intergenic 10.0%
!! TTAAGAATTTCATATATTAA+AGG + tig0025053:58090-58109 Msa1421490:intron 10.0%
!!! ATTTTTATATTTCATGAAAA+TGG + tig0025053:58653-58672 Msa1421490:intron 10.0%
!!! ATATTTTGTTTATAAGTCAA+TGG + tig0025053:56926-56945 Msa1421490:intron 15.0%
!!! TTTTTACATAATGATGATAT+AGG + tig0025053:58229-58248 Msa1421490:intron 15.0%
!! TATTGTTGTGATATTATAAT+AGG - tig0025053:59084-59103 None:intergenic 15.0%
!! ATATGATTATTCATTCTATA+TGG + tig0025053:59295-59314 Msa1421490:CDS 15.0%
!!! ATTTTCTTTCATTGTTTTTG+TGG + tig0025053:56666-56685 Msa1421490:CDS 20.0%
!!! ATTGTTTTTGTGGTATTTTT+TGG + tig0025053:56676-56695 Msa1421490:CDS 20.0%
!!! TTGATAATTCAATGAGTAAT+GGG - tig0025053:56755-56774 None:intergenic 20.0%
!!! TTTGATAATTCAATGAGTAA+TGG - tig0025053:56756-56775 None:intergenic 20.0%
!! ATTACTCATTGAATTATCAA+AGG + tig0025053:56755-56774 Msa1421490:CDS 20.0%
!! ATGTATAAGAAGACAATTAT+TGG - tig0025053:56856-56875 None:intergenic 20.0%
!! TTAAAAATAGTTTCTTAGCA+TGG + tig0025053:57614-57633 Msa1421490:intron 20.0%
!! AATTTCATATATTAAAGGTG+AGG + tig0025053:58095-58114 Msa1421490:intron 20.0%
!! ATTTCATATATTAAAGGTGA+GGG + tig0025053:58096-58115 Msa1421490:intron 20.0%
!! TGAAAATTGTATGTACATAT+TGG + tig0025053:58134-58153 Msa1421490:intron 20.0%
!! ATTGAATATATATTCTTGCA+AGG - tig0025053:58330-58349 None:intergenic 20.0%
!! TTGCAAGAATATATATTCAA+TGG + tig0025053:58329-58348 Msa1421490:CDS 20.0%
!! AAGAATATATATTCAATGGA+GGG + tig0025053:58333-58352 Msa1421490:CDS 20.0%
!! AAATATATAAGATTGCAAGA+GGG + tig0025053:59210-59229 Msa1421490:CDS 20.0%
!!! TTTGGTATTGATTCATTTGA+TGG + tig0025053:56694-56713 Msa1421490:CDS 25.0%
! TGATAATTCAATGAGTAATG+GGG - tig0025053:56754-56773 None:intergenic 25.0%
! AACATTAATTACCATTAGCT+AGG - tig0025053:56900-56919 None:intergenic 25.0%
! TAAATTCAATTCTCCATTGT+AGG - tig0025053:56952-56971 None:intergenic 25.0%
! TACAATGGAGAATTGAATTT+AGG + tig0025053:56951-56970 Msa1421490:CDS 25.0%
!! AGGATTTTATTACTCATCAA+AGG + tig0025053:57198-57217 Msa1421490:intron 25.0%
!! AAAACTTTGCTATACTTAAG+TGG - tig0025053:57240-57259 None:intergenic 25.0%
! TGAGAACACAAATGTTAAAT+GGG - tig0025053:57695-57714 None:intergenic 25.0%
! TAAAATCTTTGTGTATGAAG+AGG + tig0025053:58278-58297 Msa1421490:CDS 25.0%
! AAAATCTTTGTGTATGAAGA+GGG + tig0025053:58279-58298 Msa1421490:CDS 25.0%
! CAAGAATATATATTCAATGG+AGG + tig0025053:58332-58351 Msa1421490:CDS 25.0%
! GGGAATATTTATCAACTTAT+TGG + tig0025053:58353-58372 Msa1421490:CDS 25.0%
! TATCACACAAATATGCTTAT+TGG + tig0025053:58529-58548 Msa1421490:CDS 25.0%
! CATACTCACACTATAATTAA+CGG - tig0025053:58625-58644 None:intergenic 25.0%
!!! ATGAAAATGGTTTTGTGTAT+AGG + tig0025053:58666-58685 Msa1421490:intron 25.0%
!!! TGAAAATGGTTTTGTGTATA+GGG + tig0025053:58667-58686 Msa1421490:intron 25.0%
! ATCATTTCCTGAAATCAATT+TGG + tig0025053:58789-58808 Msa1421490:CDS 25.0%
!! TCATGGTATGAAATATTTTC+TGG - tig0025053:58970-58989 None:intergenic 25.0%
! AAATATTGTATTTGTCCAAG+TGG + tig0025053:59006-59025 Msa1421490:CDS 25.0%
! AATATTGTATTTGTCCAAGT+GGG + tig0025053:59007-59026 Msa1421490:CDS 25.0%
!! TTTTAGTGATGTTCTTGATT+GGG + tig0025053:59113-59132 Msa1421490:CDS 25.0%
! AACAAAATTTCCTTAAGCTT+GGG - tig0025053:59174-59193 None:intergenic 25.0%
!! AAGCTTAAGGAAATTTTGTT+GGG + tig0025053:59174-59193 Msa1421490:CDS 25.0%
! GAAATATATAAGATTGCAAG+AGG + tig0025053:59209-59228 Msa1421490:CDS 25.0%
! TGAAATACATCATATCTCTT+AGG - tig0025053:59276-59295 None:intergenic 25.0%
! TTATTCATTCTATATGGCTT+AGG + tig0025053:59301-59320 Msa1421490:CDS 25.0%
!! ATTCATTTGATGGTGCAAAA+TGG + tig0025053:56704-56723 Msa1421490:CDS 30.0%
!! TTCATTTGATGGTGCAAAAT+GGG + tig0025053:56705-56724 Msa1421490:CDS 30.0%
ATACACCTTGTATGATGAAA+GGG - tig0025053:56806-56825 None:intergenic 30.0%
TATACACCTTGTATGATGAA+AGG - tig0025053:56807-56826 None:intergenic 30.0%
AATGCAAGGAGATAGAAATT+TGG + tig0025053:56998-57017 Msa1421490:CDS 30.0%
TAATCATGAGAATTCTCAAG+AGG - tig0025053:57101-57120 None:intergenic 30.0%
ATCTTACCTATGAAAAGCAA+AGG - tig0025053:57153-57172 None:intergenic 30.0%
GAACTATATCATGAGAGATA+AGG + tig0025053:57178-57197 Msa1421490:intron 30.0%
! ACTTTGCTATGTTACTTAAG+TGG - tig0025053:57312-57331 None:intergenic 30.0%
CAGATTGTTAGATGTGTATA+TGG + tig0025053:57460-57479 Msa1421490:intron 30.0%
GTGAGAACACAAATGTTAAA+TGG - tig0025053:57696-57715 None:intergenic 30.0%
! ACCTTCATCTTTTAAGCTAA+GGG + tig0025053:57759-57778 Msa1421490:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - tig0025053:57833-57852 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - tig0025053:57834-57853 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + tig0025053:57954-57973 Msa1421490:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + tig0025053:57982-58001 Msa1421490:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + tig0025053:57983-58002 Msa1421490:intron 30.0%
! ATTCCCCTTAAGCTAATTTT+TGG + tig0025053:58050-58069 Msa1421490:intron 30.0%
! TTCCCCTTAAGCTAATTTTT+GGG + tig0025053:58051-58070 Msa1421490:intron 30.0%
! ATCCCAAAAATTAGCTTAAG+GGG - tig0025053:58056-58075 None:intergenic 30.0%
! CATCCCAAAAATTAGCTTAA+GGG - tig0025053:58057-58076 None:intergenic 30.0%
! TCATCCCAAAAATTAGCTTA+AGG - tig0025053:58058-58077 None:intergenic 30.0%
!!! GCTAATTTTTGGGATGAAAT+TGG + tig0025053:58061-58080 Msa1421490:intron 30.0%
GAGGCTAAAACTCTTAAATA+TGG - tig0025053:58171-58190 None:intergenic 30.0%
AATAGAGCATGACATTTAAG+AGG - tig0025053:58190-58209 None:intergenic 30.0%
ATATAGGAGTTACCACTTAA+TGG + tig0025053:58245-58264 Msa1421490:intron 30.0%
TAAATAGCTTCTCCATTAAG+TGG - tig0025053:58260-58279 None:intergenic 30.0%
AGGATCATAACAACACTAAA+TGG - tig0025053:58435-58454 None:intergenic 30.0%
GCTTATTGGAATAGAAGTTA+TGG + tig0025053:58543-58562 Msa1421490:CDS 30.0%
ACTTTGCAATGCAAATATCT+CGG + tig0025053:58741-58760 Msa1421490:CDS 30.0%
AAAATTGTTCTGTTCCATGT+TGG - tig0025053:58850-58869 None:intergenic 30.0%
! AACATGGAACAGAACAATTT+TGG + tig0025053:58849-58868 Msa1421490:CDS 30.0%
TATCTTTGTTCTTCCAATGT+TGG - tig0025053:58921-58940 None:intergenic 30.0%
TACTCATCTTCATTGTTTCA+TGG - tig0025053:58987-59006 None:intergenic 30.0%
TAAATTGCCTCAACAATTCT+TGG - tig0025053:59048-59067 None:intergenic 30.0%
CAATCAAGAACATCACTAAA+AGG - tig0025053:59114-59133 None:intergenic 30.0%
! CTTTTAGTGATGTTCTTGAT+TGG + tig0025053:59112-59131 Msa1421490:CDS 30.0%
CAACAAAATTTCCTTAAGCT+TGG - tig0025053:59175-59194 None:intergenic 30.0%
! CAAGCTTAAGGAAATTTTGT+TGG + tig0025053:59173-59192 Msa1421490:CDS 30.0%
AATACATCATATCTCTTAGG+AGG - tig0025053:59273-59292 None:intergenic 30.0%
ATCTACCCTTTCATCATACA+AGG + tig0025053:56798-56817 Msa1421490:CDS 35.0%
TATAAGTCAATGGCCTACAA+TGG + tig0025053:56936-56955 Msa1421490:intron 35.0%
! CCTTGCATTGATCTTCTTAT+AGG - tig0025053:56987-57006 None:intergenic 35.0%
CCTATAAGAAGATCAATGCA+AGG + tig0025053:56984-57003 Msa1421490:CDS 35.0%
AGGAGATAGAAATTTGGAGA+AGG + tig0025053:57004-57023 Msa1421490:CDS 35.0%
AGAAATTTGGAGAAGGTTGA+AGG + tig0025053:57011-57030 Msa1421490:CDS 35.0%
TCTCATGATTATGTTCCACA+AGG + tig0025053:57110-57129 Msa1421490:CDS 35.0%
!! GAAATGCCTTTGCTTTTCAT+AGG + tig0025053:57144-57163 Msa1421490:CDS 35.0%
AACTTTGTTACGTTCTCTCT+AGG - tig0025053:57400-57419 None:intergenic 35.0%
TAAAGTTAGCTCACATGATG+AGG - tig0025053:57495-57514 None:intergenic 35.0%
TCATGTCTCACGTGAAAATT+GGG - tig0025053:57585-57604 None:intergenic 35.0%
TTCATGTCTCACGTGAAAAT+TGG - tig0025053:57586-57605 None:intergenic 35.0%
AACTCAATCACTTGGTTATG+AGG - tig0025053:57726-57745 None:intergenic 35.0%
! CACCTTCATCTTTTAAGCTA+AGG + tig0025053:57758-57777 Msa1421490:intron 35.0%
! CCTTCATCTTTTAAGCTAAG+GGG + tig0025053:57760-57779 Msa1421490:intron 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + tig0025053:57786-57805 Msa1421490:intron 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + tig0025053:57787-57806 Msa1421490:intron 35.0%
ACTAACGAAGTCTACATTCA+GGG + tig0025053:57890-57909 Msa1421490:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + tig0025053:57922-57941 Msa1421490:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + tig0025053:57953-57972 Msa1421490:intron 35.0%
AAGTAGACATGAGCTTCATT+TGG - tig0025053:58408-58427 None:intergenic 35.0%
! TATTCGTGACAAAGCTGTTT+TGG + tig0025053:58476-58495 Msa1421490:CDS 35.0%
!! ATTCGTGACAAAGCTGTTTT+GGG + tig0025053:58477-58496 Msa1421490:CDS 35.0%
! CATGACAAGAAAGCATGAAA+TGG - tig0025053:58575-58594 None:intergenic 35.0%
TCATGCTTTCTTGTCATGAT+TGG + tig0025053:58577-58596 Msa1421490:CDS 35.0%
CATGCTTTCTTGTCATGATT+GGG + tig0025053:58578-58597 Msa1421490:CDS 35.0%
GGAAATGATGCATCTTTCTT+TGG - tig0025053:58778-58797 None:intergenic 35.0%
! CCTGTTACCAAATTGATTTC+AGG - tig0025053:58799-58818 None:intergenic 35.0%
! CCTGAAATCAATTTGGTAAC+AGG + tig0025053:58796-58815 Msa1421490:CDS 35.0%
!!! ACAATTTTGGCTTTCTTTGC+AGG + tig0025053:58862-58881 Msa1421490:CDS 35.0%
TTCCAATGTTGGAAAAGCAA+TGG - tig0025053:58910-58929 None:intergenic 35.0%
TAGTGAAATTCCCAAGCTTA+AGG + tig0025053:59161-59180 Msa1421490:CDS 35.0%
! AATTTTGTTGGGTATCTCTG+AGG + tig0025053:59185-59204 Msa1421490:CDS 35.0%
TTCATTCTATATGGCTTAGG+AGG + tig0025053:59304-59323 Msa1421490:CDS 35.0%
! ATTCAATGAGTAATGGGGTG+TGG - tig0025053:56749-56768 None:intergenic 40.0%
! TTTTGTGCACACCTAGCTAA+TGG + tig0025053:56886-56905 Msa1421490:intron 40.0%
AGAATTCTCAAGAGGCAGTA+CGG - tig0025053:57093-57112 None:intergenic 40.0%
TTTCTGTAGATGTCTCCTTG+TGG - tig0025053:57128-57147 None:intergenic 40.0%
TAATCCACCTACATCGATAC+TGG + tig0025053:57357-57376 Msa1421490:intron 40.0%
AATCCACCTACATCGATACT+GGG + tig0025053:57358-57377 Msa1421490:intron 40.0%
! TTAGCATGGAAGTGTGTATG+TGG + tig0025053:57628-57647 Msa1421490:intron 40.0%
!! ACCAAGTGATTGAGTTGAAG+TGG + tig0025053:57730-57749 Msa1421490:intron 40.0%
ACCACTTCAACTCAATCACT+TGG - tig0025053:57734-57753 None:intergenic 40.0%
CCCCTTAGCTTAAAAGATGA+AGG - tig0025053:57763-57782 None:intergenic 40.0%
GACTAACGAAGTCTACATTC+AGG + tig0025053:57889-57908 Msa1421490:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + tig0025053:57921-57940 Msa1421490:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - tig0025053:58029-58048 None:intergenic 40.0%
!! GAACCTCCTCTTTTTCACTA+TGG + tig0025053:58303-58322 Msa1421490:CDS 40.0%
CAAGGACCATAGTGAAAAAG+AGG - tig0025053:58312-58331 None:intergenic 40.0%
! CAGCTTTGTCACGAATAACT+GGG - tig0025053:58473-58492 None:intergenic 40.0%
! ACAGCTTTGTCACGAATAAC+TGG - tig0025053:58474-58493 None:intergenic 40.0%
!!! GCTGTTTTGGGAAGAACTAT+TGG + tig0025053:58489-58508 Msa1421490:CDS 40.0%
! GTTTTGTGTATAGGGACCAA+GGG + tig0025053:58675-58694 Msa1421490:intron 40.0%
! TTGGTAACAGGAGAAACAAC+AGG + tig0025053:58808-58827 Msa1421490:CDS 40.0%
GGAGAAACAACAGGTTTACT+TGG + tig0025053:58817-58836 Msa1421490:CDS 40.0%
GAAACAACAGGTTTACTTGG+TGG + tig0025053:58820-58839 Msa1421490:CDS 40.0%
TTCTTTGCAGGACAAATGCA+TGG + tig0025053:58874-58893 Msa1421490:CDS 40.0%
!! GACCATTGCTTTTCCAACAT+TGG + tig0025053:58905-58924 Msa1421490:CDS 40.0%
ATTGTATTTGTCCAAGTGGG+TGG + tig0025053:59010-59029 Msa1421490:CDS 40.0%
TTGTATTTGTCCAAGTGGGT+GGG + tig0025053:59011-59030 Msa1421490:CDS 40.0%
GGGTGTGGATACATACATCT+TGG - tig0025053:56734-56753 None:intergenic 45.0%
!! GGTGTCATTGGTTCTCAACA+AGG - tig0025053:57072-57091 None:intergenic 45.0%
GCGCTAACTCAATCTTTAGG+TGG - tig0025053:57290-57309 None:intergenic 45.0%
GTGGCGCTAACTCAATCTTT+AGG - tig0025053:57293-57312 None:intergenic 45.0%
!! GATTCTCCCAGTATCGATGT+AGG - tig0025053:57367-57386 None:intergenic 45.0%
TTACGTTCTCTCTAGGTTGC+AGG - tig0025053:57393-57412 None:intergenic 45.0%
! CATGGAAGTGTGTATGTGGT+TGG + tig0025053:57632-57651 Msa1421490:intron 45.0%
CTTTAGTCCTTGAATGGGAG+AGG + tig0025053:57792-57811 Msa1421490:intron 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + tig0025053:57846-57865 Msa1421490:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + tig0025053:57858-57877 Msa1421490:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - tig0025053:57862-57881 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - tig0025053:58024-58043 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - tig0025053:58025-58044 None:intergenic 45.0%
GGACCATAGTGAAAAAGAGG+AGG - tig0025053:58309-58328 None:intergenic 45.0%
CTGGGTGAAAGAGATGTTCA+AGG - tig0025053:58455-58474 None:intergenic 45.0%
!! GGTTTTGTGTATAGGGACCA+AGG + tig0025053:58674-58693 Msa1421490:intron 45.0%
TTCACATACCATGTTGCCCT+TGG - tig0025053:58694-58713 None:intergenic 45.0%
AAGGGCAACATGGTATGTGA+AGG + tig0025053:58693-58712 Msa1421490:CDS 45.0%
! TACTTGGTGGCTATCCAACA+TGG + tig0025053:58833-58852 Msa1421490:CDS 45.0%
GGCAAGTCCAAGAATTGTTG+AGG + tig0025053:59038-59057 Msa1421490:CDS 45.0%
!! AAGAGGCAGTACGGTGTCAT+TGG - tig0025053:57084-57103 None:intergenic 50.0%
!! TCTCCCAGTATCGATGTAGG+TGG - tig0025053:57364-57383 None:intergenic 50.0%
GACGAATCCTCTCCCATTCA+AGG - tig0025053:57802-57821 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + tig0025053:57857-57876 Msa1421490:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - tig0025053:57863-57882 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + tig0025053:58013-58032 Msa1421490:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + tig0025053:58014-58033 Msa1421490:intron 50.0%
TATAGGGACCAAGGGCAACA+TGG + tig0025053:58683-58702 Msa1421490:intron 50.0%
TTGTCCAAGTGGGTGGGAAG+TGG + tig0025053:59017-59036 Msa1421490:CDS 55.0%
! CTTGCCACTTCCCACCCACT+TGG - tig0025053:59024-59043 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0025053 gene 56628 59347 56628 ID=Msa1421490;Name=Msa1421490
tig0025053 mRNA 56628 59347 56628 ID=Msa1421490-mRNA-1;Parent=Msa1421490;Name=Msa1421490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.5|1|0.66|0.5|4|0|474
tig0025053 exon 56628 56819 56628 ID=Msa1421490-mRNA-1:exon:2098;Parent=Msa1421490-mRNA-1
tig0025053 exon 56942 57165 56942 ID=Msa1421490-mRNA-1:exon:2099;Parent=Msa1421490-mRNA-1
tig0025053 exon 58251 58599 58251 ID=Msa1421490-mRNA-1:exon:2100;Parent=Msa1421490-mRNA-1
tig0025053 exon 58688 59347 58688 ID=Msa1421490-mRNA-1:exon:2101;Parent=Msa1421490-mRNA-1
tig0025053 CDS 56628 56819 56628 ID=Msa1421490-mRNA-1:cds;Parent=Msa1421490-mRNA-1
tig0025053 CDS 56942 57165 56942 ID=Msa1421490-mRNA-1:cds;Parent=Msa1421490-mRNA-1
tig0025053 CDS 58251 58599 58251 ID=Msa1421490-mRNA-1:cds;Parent=Msa1421490-mRNA-1
tig0025053 CDS 58688 59347 58688 ID=Msa1421490-mRNA-1:cds;Parent=Msa1421490-mRNA-1
Gene Sequence

>Msa1421490

ATGTGGCACTTCAACAAAATACACTTAAGTCTAGTCACATTTTCTTTCATTGTTTTTGTGGTATTTTTTGGTATTGATTCATTTGATGGTGCAAAATGGGTATCCAAGATGTATGTATCCACACCCCATTACTCATTGAATTATCAAAGGAATCAAAAGAAACATTCAGAATCTACCCTTTCATCATACAAGTCAATGGCCTACAATGGAGAATTGAATTTAGGTAACAAATTGCCTATAAGAAGATCAATGCAAGGAGATAGAAATTTGGAGAAGGTTGAAGGAAGTCTTGCAAAAGCAAGAGCATTGATAAAACAAGCCTTGTTGAGAACCAATGACACCGTACTGCCTCTTGAGAATTCTCATGATTATGTTCCACAAGGAGACATCTACAGAAATGCCTTTGCTTTTCATAGGAGTTACCACTTAATGGAGAAGCTATTTAAAATCTTTGTGTATGAAGAGGGAGAACCTCCTCTTTTTCACTATGGTCCTTGCAAGAATATATATTCAATGGAGGGAATATTTATCAACTTATTGGAAAGCAATACTTTGTTTCGAACTCAGAATCCAAATGAAGCTCATGTCTACTTTCTTCCATTTAGTGTTGTTATGATCCTTGAACATCTCTTTCACCCAGTTATTCGTGACAAAGCTGTTTTGGGAAGAACTATTGGTGATTATGTTCATATCATATCACACAAATATGCTTATTGGAATAGAAGTTATGGAGCTGACCATTTCATGCTTTCTTGTCATGATTGGGGACCAAGGGCAACATGGTATGTGAAGGAATTGTATTTCATTGCAATTCGAGTACTTTGCAATGCAAATATCTCGGAGCATTTCAATCCAAAGAAAGATGCATCATTTCCTGAAATCAATTTGGTAACAGGAGAAACAACAGGTTTACTTGGTGGCTATCCAACATGGAACAGAACAATTTTGGCTTTCTTTGCAGGACAAATGCATGGTAGAATTAGACCATTGCTTTTCCAACATTGGAAGAACAAAGATAAAGATGTGTTAGTTTATGAAAAACTTCCAGAAAATATTTCATACCATGAAACAATGAAGATGAGTAAATATTGTATTTGTCCAAGTGGGTGGGAAGTGGCAAGTCCAAGAATTGTTGAGGCAATTTATGCTGAATGTGTACCTATTATAATATCACAACAATATGTACTTCCTTTTAGTGATGTTCTTGATTGGGATTCATTTTCTGTTCAAATTGAAGTTAGTGAAATTCCCAAGCTTAAGGAAATTTTGTTGGGTATCTCTGAGGAGAAATATATAAGATTGCAAGAGGGTGTTAAGCAAGTTCAAAGACATTTTGAAGTGAATAATCCTCCTAAGAGATATGATGTATTTCATATGATTATTCATTCTATATGGCTTAGGAGGTTGAATGTACTTGTGAAGTAA

Protein sequence

>Msa1421490

MWHFNKIHLSLVTFSFIVFVVFFGIDSFDGAKWVSKMYVSTPHYSLNYQRNQKKHSESTLSSYKSMAYNGELNLGNKLPIRRSMQGDRNLEKVEGSLAKARALIKQALLRTNDTVLPLENSHDYVPQGDIYRNAFAFHRSYHLMEKLFKIFVYEEGEPPLFHYGPCKNIYSMEGIFINLLESNTLFRTQNPNEAHVYFLPFSVVMILEHLFHPVIRDKAVLGRTIGDYVHIISHKYAYWNRSYGADHFMLSCHDWGPRATWYVKELYFIAIRVLCNANISEHFNPKKDASFPEINLVTGETTGLLGGYPTWNRTILAFFAGQMHGRIRPLLFQHWKNKDKDVLVYEKLPENISYHETMKMSKYCICPSGWEVASPRIVEAIYAECVPIIISQQYVLPFSDVLDWDSFSVQIEVSEIPKLKEILLGISEEKYIRLQEGVKQVQRHFEVNNPPKRYDVFHMIIHSIWLRRLNVLVK*