Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056489.t1 | RHN40797.1 | 73.7 | 353 | 90 | 3 | 1 | 352 | 1 | 351 | 6.30E-139 | 503.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056489.t1 | Q8H1R7 | 28.6 | 346 | 225 | 9 | 16 | 352 | 87 | 419 | 2.2e-23 | 111.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056489.t1 | A0A396GQ43 | 73.7 | 353 | 90 | 3 | 1 | 352 | 1 | 351 | 4.6e-139 | 503.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056489 | MS.gene83731 | 0.961638 | 6.19E-120 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056489.t1 | MTR_8g445780 | 74.593 | 307 | 75 | 3 | 1 | 306 | 86 | 390 | 1.18e-159 | 452 |
MS.gene056489.t1 | MTR_8g014260 | 63.305 | 357 | 125 | 5 | 1 | 352 | 96 | 451 | 8.07e-141 | 407 |
MS.gene056489.t1 | MTR_4g024710 | 66.207 | 290 | 97 | 1 | 64 | 352 | 58 | 347 | 2.14e-126 | 367 |
MS.gene056489.t1 | MTR_8g014210 | 73.707 | 232 | 60 | 1 | 121 | 352 | 1 | 231 | 8.44e-116 | 335 |
MS.gene056489.t1 | MTR_4g024745 | 64.000 | 275 | 98 | 1 | 62 | 335 | 10 | 284 | 3.39e-109 | 320 |
MS.gene056489.t1 | MTR_8g062270 | 50.000 | 348 | 152 | 10 | 16 | 351 | 116 | 453 | 3.34e-91 | 280 |
MS.gene056489.t1 | MTR_2g083840 | 49.584 | 361 | 168 | 9 | 1 | 352 | 102 | 457 | 8.17e-91 | 280 |
MS.gene056489.t1 | MTR_8g468810 | 47.934 | 363 | 172 | 11 | 1 | 352 | 107 | 463 | 7.70e-86 | 267 |
MS.gene056489.t1 | MTR_8g058970 | 49.713 | 348 | 158 | 10 | 18 | 352 | 134 | 477 | 2.98e-85 | 266 |
MS.gene056489.t1 | MTR_8g468840 | 45.938 | 357 | 177 | 10 | 3 | 350 | 99 | 448 | 2.37e-80 | 252 |
MS.gene056489.t1 | MTR_5g092960 | 46.175 | 366 | 173 | 11 | 3 | 352 | 105 | 462 | 6.85e-79 | 249 |
MS.gene056489.t1 | MTR_4g032730 | 43.651 | 378 | 173 | 11 | 3 | 352 | 102 | 467 | 7.05e-73 | 233 |
MS.gene056489.t1 | MTR_8g467800 | 44.476 | 353 | 170 | 11 | 16 | 352 | 111 | 453 | 5.95e-72 | 231 |
MS.gene056489.t1 | MTR_8g468760 | 43.333 | 360 | 155 | 11 | 3 | 351 | 97 | 418 | 1.26e-68 | 221 |
MS.gene056489.t1 | MTR_8g014160 | 40.449 | 356 | 152 | 4 | 1 | 352 | 126 | 425 | 1.32e-67 | 219 |
MS.gene056489.t1 | MTR_8g468810 | 48.339 | 271 | 128 | 8 | 1 | 265 | 107 | 371 | 1.32e-60 | 199 |
MS.gene056489.t1 | MTR_8g077460 | 67.586 | 145 | 47 | 0 | 208 | 352 | 231 | 375 | 1.17e-59 | 196 |
MS.gene056489.t1 | MTR_8g077460 | 55.556 | 135 | 60 | 0 | 1 | 135 | 92 | 226 | 2.92e-38 | 140 |
MS.gene056489.t1 | MTR_8g469020 | 39.071 | 366 | 192 | 12 | 9 | 352 | 95 | 451 | 2.01e-58 | 196 |
MS.gene056489.t1 | MTR_8g058965 | 42.373 | 354 | 176 | 13 | 19 | 352 | 111 | 456 | 9.09e-58 | 194 |
MS.gene056489.t1 | MTR_8g062310 | 39.884 | 346 | 176 | 13 | 15 | 352 | 107 | 428 | 4.52e-54 | 184 |
MS.gene056489.t1 | MTR_5g092960 | 45.788 | 273 | 132 | 8 | 3 | 265 | 105 | 371 | 4.66e-50 | 172 |
MS.gene056489.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 1.80e-49 | 169 |
MS.gene056489.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 1.96e-49 | 168 |
MS.gene056489.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 2.52e-49 | 169 |
MS.gene056489.t1 | MTR_8g062010 | 39.296 | 341 | 182 | 12 | 19 | 352 | 108 | 430 | 1.76e-48 | 169 |
MS.gene056489.t1 | MTR_8g062080 | 37.572 | 346 | 184 | 14 | 19 | 352 | 120 | 445 | 1.86e-46 | 164 |
MS.gene056489.t1 | MTR_8g070950 | 38.000 | 350 | 176 | 16 | 20 | 352 | 109 | 434 | 9.71e-46 | 162 |
MS.gene056489.t1 | MTR_4g050250 | 42.105 | 304 | 145 | 11 | 19 | 298 | 123 | 419 | 1.75e-45 | 160 |
MS.gene056489.t1 | MTR_8g062300 | 33.422 | 374 | 194 | 13 | 16 | 352 | 122 | 477 | 9.56e-36 | 135 |
MS.gene056489.t1 | MTR_8g014230 | 61.290 | 93 | 35 | 1 | 260 | 352 | 13 | 104 | 1.21e-30 | 112 |
MS.gene056489.t1 | MTR_8g467800 | 44.175 | 206 | 101 | 7 | 16 | 214 | 111 | 309 | 8.77e-30 | 117 |
MS.gene056489.t1 | MTR_5g084070 | 32.335 | 334 | 204 | 12 | 19 | 344 | 100 | 419 | 3.65e-26 | 108 |
MS.gene056489.t1 | MTR_8g467790 | 35.587 | 281 | 137 | 14 | 20 | 293 | 246 | 489 | 2.87e-25 | 106 |
MS.gene056489.t1 | MTR_2g086020 | 47.183 | 142 | 71 | 4 | 214 | 352 | 175 | 315 | 3.74e-24 | 101 |
MS.gene056489.t1 | MTR_4g113810 | 39.024 | 164 | 97 | 2 | 1 | 163 | 1 | 162 | 2.42e-22 | 92.8 |
MS.gene056489.t1 | MTR_5g021550 | 63.492 | 63 | 22 | 1 | 1 | 63 | 101 | 162 | 8.04e-19 | 82.8 |
MS.gene056489.t1 | MTR_8g014290 | 64.516 | 62 | 21 | 1 | 3 | 64 | 100 | 160 | 1.06e-18 | 82.4 |
MS.gene056489.t1 | MTR_5g080710 | 30.473 | 338 | 209 | 13 | 19 | 344 | 123 | 446 | 3.07e-18 | 85.9 |
MS.gene056489.t1 | MTR_1g038710 | 29.377 | 337 | 197 | 14 | 12 | 320 | 104 | 427 | 1.50e-16 | 80.9 |
MS.gene056489.t1 | MTR_1g041245 | 26.453 | 344 | 189 | 10 | 17 | 352 | 99 | 386 | 3.97e-16 | 79.3 |
MS.gene056489.t1 | MTR_4g056040 | 28.011 | 357 | 209 | 14 | 19 | 346 | 127 | 464 | 9.14e-16 | 78.6 |
MS.gene056489.t1 | MTR_4g056070 | 27.515 | 338 | 176 | 12 | 10 | 306 | 128 | 437 | 2.00e-15 | 77.4 |
MS.gene056489.t1 | MTR_8g014220 | 41.071 | 112 | 53 | 4 | 1 | 108 | 58 | 160 | 8.07e-14 | 68.9 |
MS.gene056489.t1 | MTR_5g008950 | 27.778 | 234 | 132 | 9 | 148 | 352 | 140 | 365 | 8.62e-14 | 72.0 |
MS.gene056489.t1 | MTR_3g108560 | 26.254 | 339 | 188 | 11 | 19 | 351 | 106 | 388 | 1.01e-12 | 68.9 |
MS.gene056489.t1 | MTR_7g032380 | 33.636 | 110 | 70 | 1 | 246 | 352 | 247 | 356 | 1.24e-11 | 65.5 |
MS.gene056489.t1 | MTR_5g039950 | 27.500 | 320 | 194 | 10 | 16 | 323 | 97 | 390 | 1.91e-11 | 65.1 |
MS.gene056489.t1 | MTR_4g080787 | 29.293 | 297 | 173 | 15 | 79 | 351 | 180 | 463 | 3.35e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056489.t1 | AT4G26340 | 28.902 | 346 | 224 | 10 | 16 | 352 | 87 | 419 | 8.39e-27 | 110 |
MS.gene056489.t1 | AT4G10420 | 27.729 | 339 | 217 | 11 | 22 | 351 | 2 | 321 | 8.36e-23 | 97.8 |
MS.gene056489.t1 | AT4G00160 | 31.356 | 354 | 200 | 18 | 22 | 352 | 109 | 442 | 1.64e-22 | 98.6 |
MS.gene056489.t1 | AT3G52680 | 31.143 | 350 | 207 | 16 | 22 | 352 | 111 | 445 | 1.38e-21 | 95.9 |
MS.gene056489.t1 | AT1G32375 | 26.087 | 345 | 231 | 10 | 19 | 352 | 91 | 422 | 7.47e-21 | 93.6 |
MS.gene056489.t1 | AT1G32375 | 26.087 | 345 | 231 | 10 | 19 | 352 | 91 | 422 | 7.47e-21 | 93.6 |
MS.gene056489.t1 | AT3G26920 | 29.395 | 347 | 220 | 12 | 15 | 351 | 8 | 339 | 1.56e-20 | 91.7 |
MS.gene056489.t1 | AT3G26920 | 29.395 | 347 | 220 | 12 | 15 | 351 | 8 | 339 | 1.56e-20 | 91.7 |
MS.gene056489.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene056489.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene056489.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene056489.t1 | AT3G50710 | 29.261 | 352 | 209 | 16 | 19 | 349 | 92 | 424 | 8.93e-19 | 87.4 |
MS.gene056489.t1 | AT5G56390 | 29.206 | 315 | 197 | 12 | 50 | 351 | 123 | 424 | 7.85e-18 | 84.7 |
MS.gene056489.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene056489.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene056489.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene056489.t1 | AT1G78750 | 26.062 | 353 | 226 | 14 | 19 | 349 | 116 | 455 | 9.96e-18 | 84.3 |
MS.gene056489.t1 | AT1G78750 | 26.062 | 353 | 226 | 14 | 19 | 349 | 116 | 455 | 9.96e-18 | 84.3 |
MS.gene056489.t1 | AT5G38570 | 25.356 | 351 | 207 | 11 | 5 | 351 | 76 | 375 | 1.23e-17 | 83.6 |
MS.gene056489.t1 | AT5G56380 | 29.805 | 359 | 208 | 16 | 19 | 351 | 98 | 438 | 3.22e-17 | 82.8 |
MS.gene056489.t1 | AT5G56380 | 29.805 | 359 | 208 | 16 | 19 | 351 | 98 | 438 | 3.22e-17 | 82.8 |
MS.gene056489.t1 | AT5G56560 | 25.967 | 362 | 234 | 14 | 3 | 352 | 79 | 418 | 4.55e-17 | 82.4 |
MS.gene056489.t1 | AT5G50270 | 28.443 | 334 | 205 | 15 | 19 | 334 | 91 | 408 | 1.31e-16 | 80.9 |
MS.gene056489.t1 | AT5G53840 | 24.859 | 354 | 236 | 13 | 12 | 349 | 98 | 437 | 2.60e-16 | 80.1 |
MS.gene056489.t1 | AT5G56440 | 26.667 | 360 | 216 | 15 | 19 | 351 | 91 | 429 | 5.42e-16 | 79.0 |
MS.gene056489.t1 | AT4G26350 | 25.753 | 365 | 222 | 12 | 15 | 352 | 86 | 428 | 2.61e-15 | 77.0 |
MS.gene056489.t1 | AT5G53635 | 25.641 | 351 | 223 | 13 | 21 | 351 | 93 | 425 | 8.12e-15 | 75.5 |
MS.gene056489.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 11 | 365 | 1.21e-14 | 74.7 |
MS.gene056489.t1 | AT5G60610 | 27.003 | 337 | 178 | 12 | 19 | 321 | 85 | 387 | 1.44e-14 | 74.7 |
MS.gene056489.t1 | AT5G60610 | 27.003 | 337 | 178 | 12 | 19 | 321 | 85 | 387 | 1.44e-14 | 74.7 |
MS.gene056489.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 84 | 438 | 1.50e-14 | 74.7 |
MS.gene056489.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 84 | 438 | 1.50e-14 | 74.7 |
MS.gene056489.t1 | AT3G26920 | 26.377 | 345 | 194 | 12 | 15 | 351 | 8 | 300 | 2.83e-14 | 72.8 |
MS.gene056489.t1 | AT5G38590 | 26.590 | 346 | 214 | 15 | 7 | 337 | 81 | 401 | 6.00e-14 | 72.8 |
MS.gene056489.t1 | AT1G66290 | 24.935 | 385 | 214 | 16 | 3 | 349 | 103 | 450 | 8.59e-14 | 72.4 |
MS.gene056489.t1 | AT1G06630 | 28.195 | 266 | 179 | 9 | 1 | 262 | 95 | 352 | 1.40e-13 | 71.6 |
MS.gene056489.t1 | AT1G06630 | 28.195 | 266 | 179 | 9 | 1 | 262 | 95 | 352 | 1.40e-13 | 71.6 |
MS.gene056489.t1 | AT1G51370 | 26.857 | 350 | 214 | 16 | 17 | 347 | 104 | 430 | 1.40e-13 | 72.0 |
MS.gene056489.t1 | AT5G56370 | 26.136 | 352 | 214 | 12 | 22 | 351 | 93 | 420 | 1.85e-13 | 71.6 |
MS.gene056489.t1 | AT5G56370 | 26.136 | 352 | 214 | 12 | 22 | 351 | 93 | 420 | 1.85e-13 | 71.6 |
MS.gene056489.t1 | AT5G56700 | 26.183 | 317 | 201 | 12 | 19 | 320 | 52 | 350 | 3.54e-13 | 70.1 |
MS.gene056489.t1 | AT2G26030 | 25.606 | 371 | 237 | 16 | 7 | 349 | 84 | 443 | 4.52e-13 | 70.5 |
MS.gene056489.t1 | AT1G66310 | 25.348 | 359 | 225 | 13 | 11 | 349 | 104 | 439 | 7.85e-13 | 69.7 |
MS.gene056489.t1 | AT5G44850 | 24.496 | 347 | 178 | 13 | 19 | 349 | 50 | 328 | 1.05e-12 | 68.6 |
MS.gene056489.t1 | AT2G26860 | 30.061 | 326 | 187 | 15 | 19 | 321 | 90 | 397 | 1.25e-12 | 68.9 |
MS.gene056489.t1 | AT2G26860 | 30.061 | 326 | 187 | 15 | 19 | 321 | 90 | 397 | 1.25e-12 | 68.9 |
MS.gene056489.t1 | AT3G49020 | 28.477 | 302 | 171 | 16 | 77 | 352 | 163 | 445 | 1.64e-12 | 68.6 |
MS.gene056489.t1 | AT4G13965 | 29.538 | 325 | 191 | 17 | 42 | 349 | 117 | 420 | 1.71e-12 | 68.6 |
MS.gene056489.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 2 | 303 | 105 | 396 | 6.01e-12 | 67.4 |
MS.gene056489.t1 | AT5G56800 | 25.352 | 284 | 181 | 12 | 83 | 352 | 78 | 344 | 6.99e-12 | 66.2 |
MS.gene056489.t1 | AT5G56560 | 26.159 | 302 | 186 | 13 | 68 | 352 | 326 | 607 | 7.72e-12 | 67.0 |
MS.gene056489.t1 | AT2G04230 | 26.273 | 373 | 235 | 19 | 3 | 352 | 91 | 446 | 8.48e-12 | 66.6 |
MS.gene056489.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 1 | 302 | 323 | 614 | 9.03e-12 | 66.6 |
MS.gene056489.t1 | AT1G69630 | 24.857 | 350 | 228 | 13 | 17 | 344 | 107 | 443 | 9.10e-12 | 66.2 |
MS.gene056489.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 1 | 302 | 321 | 612 | 9.18e-12 | 66.6 |
MS.gene056489.t1 | AT3G60040 | 27.103 | 321 | 184 | 15 | 2 | 302 | 324 | 614 | 9.73e-12 | 66.6 |
MS.gene056489.t1 | AT3G60040 | 27.103 | 321 | 184 | 15 | 2 | 302 | 325 | 615 | 1.03e-11 | 66.6 |
MS.gene056489.t1 | AT5G44950 | 23.121 | 346 | 235 | 12 | 22 | 345 | 96 | 432 | 2.71e-11 | 65.1 |
MS.gene056489.t1 | AT1G05080 | 26.503 | 366 | 207 | 18 | 19 | 352 | 104 | 439 | 2.82e-11 | 64.7 |
MS.gene056489.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene056489.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene056489.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene056489.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene056489.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene056489.t1 | AT5G41840 | 26.103 | 272 | 167 | 8 | 22 | 262 | 117 | 385 | 5.49e-11 | 64.3 |
MS.gene056489.t1 | AT3G52690 | 28.571 | 315 | 190 | 14 | 54 | 351 | 1 | 297 | 8.71e-11 | 62.8 |
MS.gene056489.t1 | AT5G62970 | 27.654 | 358 | 208 | 16 | 19 | 351 | 117 | 448 | 9.72e-11 | 63.2 |
Find 93 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATGACGATGATGAAAT+TGG | 0.200397 | 8.3:-32317555 | MS.gene056489:CDS |
GAATGTCGTGCTTCTTCTTT+AGG | 0.213887 | 8.3:+32316478 | None:intergenic |
CAAACTTTGTCCAAGCTTTC+CGG | 0.219592 | 8.3:+32317609 | None:intergenic |
AATCTTCTTGGCGCTCTCTC+TGG | 0.240943 | 8.3:-32317378 | MS.gene056489:CDS |
TGTTCGAGGGAGGTTGAAAT+TGG | 0.258153 | 8.3:+32318808 | None:intergenic |
CTCTATGCTGCTGATTATTC+TGG | 0.274848 | 8.3:-32318833 | MS.gene056489:CDS |
AAGCTTGGCCAAACGTGATT+TGG | 0.281671 | 8.3:+32317484 | None:intergenic |
CAGGAACAGTCACCAATCTT+AGG | 0.285145 | 8.3:-32316663 | MS.gene056489:CDS |
TCTTTGTTCCTCAGTCTCTA+TGG | 0.292907 | 8.3:-32317783 | MS.gene056489:intron |
ACCCCTTTACACAATCTTCT+TGG | 0.319899 | 8.3:-32317390 | MS.gene056489:CDS |
CGCCAAGAAGATTGTGTAAA+GGG | 0.353681 | 8.3:+32317388 | None:intergenic |
AAATTCTTTAAATTGAATAA+AGG | 0.358875 | 8.3:+32316593 | None:intergenic |
GATTATTACTGATAGTTCAT+TGG | 0.362559 | 8.3:-32316502 | MS.gene056489:CDS |
AACATTACCCAAATCACGTT+TGG | 0.385489 | 8.3:-32317492 | MS.gene056489:CDS |
GATCAGGTGCATTTATTTCA+AGG | 0.388283 | 8.3:+32317526 | None:intergenic |
TCAATGACGATGATGAAATT+GGG | 0.390472 | 8.3:-32317554 | MS.gene056489:CDS |
ATCTTCTTGGCGCTCTCTCT+GGG | 0.391095 | 8.3:-32317377 | MS.gene056489:CDS |
AGCTTGGCCAAACGTGATTT+GGG | 0.393277 | 8.3:+32317485 | None:intergenic |
ATTCAATTTAAAGAATTTCA+AGG | 0.397138 | 8.3:-32316588 | MS.gene056489:CDS |
GACAATTAGGCACACTAGGC+AGG | 0.409203 | 8.3:+32316631 | None:intergenic |
AGGTGGGATACAAGACAATT+AGG | 0.409698 | 8.3:+32316618 | None:intergenic |
ACGTGATTTGGGTAATGTTA+AGG | 0.410654 | 8.3:+32317496 | None:intergenic |
GCGTGGGTTCGTGCCGCCAT+TGG | 0.432560 | 8.3:-32318884 | MS.gene056489:CDS |
TGCCTACTCGGTTGAGGCGT+GGG | 0.438185 | 8.3:-32318900 | MS.gene056489:CDS |
GGTCACAGAACCAAACGATT+GGG | 0.444807 | 8.3:+32317410 | None:intergenic |
TGCGTGAATGCACTTCTTTG+TGG | 0.449824 | 8.3:-32317669 | MS.gene056489:CDS |
CTTTAAATTGAATAAAGGTC+AGG | 0.450396 | 8.3:+32316598 | None:intergenic |
TCTGATGTGCCAAGGGCCTC+AGG | 0.454537 | 8.3:-32316444 | MS.gene056489:CDS |
AATCAGCAGCATAGAGAGTA+AGG | 0.457220 | 8.3:+32318840 | None:intergenic |
CCACTAATCTCGTTTCGCTC+AGG | 0.457239 | 8.3:-32318775 | MS.gene056489:intron |
CCTGAGCGAAACGAGATTAG+TGG | 0.459933 | 8.3:+32318775 | None:intergenic |
TCTCTCTGGGACTAAACATC+TGG | 0.472916 | 8.3:-32317364 | MS.gene056489:CDS |
GTGGAAGTGAATAGTGTTCG+AGG | 0.474616 | 8.3:+32318794 | None:intergenic |
TCAACAAATGACACCTCATC+TGG | 0.479159 | 8.3:+32316561 | None:intergenic |
AAGATTCAGATATTCAATGA+TGG | 0.484570 | 8.3:+32317641 | None:intergenic |
TTCAGCCTTCTTACGGAAGG+TGG | 0.494049 | 8.3:+32317582 | None:intergenic |
GTGTCCCACCTTCCGTAAGA+AGG | 0.494377 | 8.3:-32317587 | MS.gene056489:CDS |
ATGTTAAGGTACTCAAGATC+AGG | 0.497530 | 8.3:+32317510 | None:intergenic |
TGATAAGAGCCGTGCCTACT+CGG | 0.510408 | 8.3:-32318912 | MS.gene056489:CDS |
AGATTCAGATATTCAATGAT+GGG | 0.510683 | 8.3:+32317642 | None:intergenic |
AGGGTAGCCCATCCTAAGAT+TGG | 0.511860 | 8.3:+32316651 | None:intergenic |
AACTAACCACTGTGGAGGGT+TGG | 0.518426 | 8.3:+32317742 | None:intergenic |
TGACACATTCCTGAGGCCCT+TGG | 0.520521 | 8.3:+32316435 | None:intergenic |
TTCCTCAAGGTAGGGTCCAA+TGG | 0.522965 | 8.3:+32318868 | None:intergenic |
GCTAATCAACATTGGTTATG+TGG | 0.529952 | 8.3:-32317700 | MS.gene056489:CDS |
ATTATTAGAACTTGAAGCAT+GGG | 0.531928 | 8.3:+32317040 | None:intergenic |
AACAGTCACCAATCTTAGGA+TGG | 0.532918 | 8.3:-32316659 | MS.gene056489:CDS |
ACCACGGAAGATTGAGCTCT+AGG | 0.536567 | 8.3:+32317101 | None:intergenic |
GTGCCTACTCGGTTGAGGCG+TGG | 0.538857 | 8.3:-32318901 | MS.gene056489:CDS |
TAAATTGAATAAAGGTCAGG+TGG | 0.546131 | 8.3:+32316601 | None:intergenic |
AATTTAACCTTGGTTGTCGA+AGG | 0.549352 | 8.3:+32317333 | None:intergenic |
GTTCGAGGGAGGTTGAAATT+GGG | 0.549391 | 8.3:+32318809 | None:intergenic |
GAGCCGTGCCTACTCGGTTG+AGG | 0.550377 | 8.3:-32318906 | MS.gene056489:CDS |
GGGTCACAGAACCAAACGAT+TGG | 0.554684 | 8.3:+32317409 | None:intergenic |
GCGCCAAGAAGATTGTGTAA+AGG | 0.556529 | 8.3:+32317387 | None:intergenic |
ATTAGCAGCGTCTTTAATGA+CGG | 0.558646 | 8.3:+32317717 | None:intergenic |
AGGTCGAGTTCCTCAAGGTA+GGG | 0.564740 | 8.3:+32318860 | None:intergenic |
AATTATTAGAACTTGAAGCA+TGG | 0.568636 | 8.3:+32317039 | None:intergenic |
GCCTAGAGCTCAATCTTCCG+TGG | 0.569832 | 8.3:-32317102 | MS.gene056489:CDS |
TGGAAGTGAATAGTGTTCGA+GGG | 0.574413 | 8.3:+32318795 | None:intergenic |
ACAAGACAATTAGGCACACT+AGG | 0.575239 | 8.3:+32316627 | None:intergenic |
GTCACAGAACCAAACGATTG+GGG | 0.575766 | 8.3:+32317411 | None:intergenic |
AAACATTATCTGATGTGCCA+AGG | 0.577099 | 8.3:-32316452 | MS.gene056489:CDS |
AAGACGCTGCTAATCAACAT+TGG | 0.579385 | 8.3:-32317708 | MS.gene056489:CDS |
CAATGACGATGATGAAATTG+GGG | 0.582204 | 8.3:-32317553 | MS.gene056489:CDS |
AACATTATCTGATGTGCCAA+GGG | 0.587776 | 8.3:-32316451 | MS.gene056489:CDS |
AGTTGCACATGCTGAAAGCT+TGG | 0.589013 | 8.3:+32317469 | None:intergenic |
TCAGCCTTCTTACGGAAGGT+GGG | 0.597759 | 8.3:+32317583 | None:intergenic |
GAGTAAGGTCGAGTTCCTCA+AGG | 0.603153 | 8.3:+32318855 | None:intergenic |
GGCAAACTAACCACTGTGGA+GGG | 0.607532 | 8.3:+32317738 | None:intergenic |
CGGCAAACTAACCACTGTGG+AGG | 0.608277 | 8.3:+32317737 | None:intergenic |
ACAATTAGGCACACTAGGCA+GGG | 0.608364 | 8.3:+32316632 | None:intergenic |
ACAGTCACCAATCTTAGGAT+GGG | 0.609558 | 8.3:-32316658 | MS.gene056489:CDS |
ACGCCTCAACCGAGTAGGCA+CGG | 0.612100 | 8.3:+32318903 | None:intergenic |
GTGTACAAACAGTGGCTGCT+TGG | 0.612411 | 8.3:-32317169 | MS.gene056489:intron |
CATGGGACATTTCTGAAGCA+AGG | 0.613005 | 8.3:+32317057 | None:intergenic |
ATTTCAAGGATTTCCAGATG+AGG | 0.618723 | 8.3:-32316574 | MS.gene056489:CDS |
TCTAATAATTCAGTATGACA+AGG | 0.620543 | 8.3:-32317026 | MS.gene056489:intron |
GTTGAAACCTTCGACAACCA+AGG | 0.628242 | 8.3:-32317340 | MS.gene056489:intron |
CGCCATTGGACCCTACCTTG+AGG | 0.631023 | 8.3:-32318870 | MS.gene056489:CDS |
AAGTGAATAGTGTTCGAGGG+AGG | 0.633122 | 8.3:+32318798 | None:intergenic |
AAATTGAATAAAGGTCAGGT+GGG | 0.634827 | 8.3:+32316602 | None:intergenic |
AAGGTCGAGTTCCTCAAGGT+AGG | 0.637352 | 8.3:+32318859 | None:intergenic |
GATTCAGATATTCAATGATG+GGG | 0.640844 | 8.3:+32317643 | None:intergenic |
GTGCAACTTACACAATGTCG+TGG | 0.650583 | 8.3:-32317454 | MS.gene056489:CDS |
GCCAAGAAGATTGTGTAAAG+GGG | 0.659686 | 8.3:+32317389 | None:intergenic |
AACCCACGCCTCAACCGAGT+AGG | 0.676037 | 8.3:+32318898 | None:intergenic |
TCACAGAACCAAACGATTGG+GGG | 0.678392 | 8.3:+32317412 | None:intergenic |
CTCAAGGTAGGGTCCAATGG+CGG | 0.686389 | 8.3:+32318871 | None:intergenic |
TTTAAGTTGACACATTCCTG+AGG | 0.695966 | 8.3:+32316428 | None:intergenic |
AGAGAATTGAAGTTAAACCA+CGG | 0.702506 | 8.3:+32317085 | None:intergenic |
TGACGGCAAACTAACCACTG+TGG | 0.757376 | 8.3:+32317734 | None:intergenic |
AAACATCCAACCCTCCACAG+TGG | 0.777874 | 8.3:-32317748 | MS.gene056489:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATATTAATTTTTTTTTAAA+AGG | + | chr8.3:32318652-32318671 | None:intergenic | 0.0% |
!!! | TTTTTTTTTTTTTTATATTT+TGG | + | chr8.3:32317508-32317527 | None:intergenic | 0.0% |
!! | AAAATAAAAAAATTTAACCT+TGG | + | chr8.3:32318043-32318062 | None:intergenic | 10.0% |
!! | AAATTCTTTAAATTGAATAA+AGG | + | chr8.3:32318773-32318792 | None:intergenic | 10.0% |
!! | TCTTACTAAAATAAATTATT+GGG | - | chr8.3:32316934-32316953 | MS.gene056489:intron | 10.0% |
!! | TTCTTACTAAAATAAATTAT+TGG | - | chr8.3:32316933-32316952 | MS.gene056489:intron | 10.0% |
!! | TTTATAGATTCAAATTAATT+AGG | + | chr8.3:32317217-32317236 | None:intergenic | 10.0% |
!!! | AATAATTTATTTTAGTAAGA+AGG | + | chr8.3:32316934-32316953 | None:intergenic | 10.0% |
!!! | ATAATTTATTTTAGTAAGAA+GGG | + | chr8.3:32316933-32316952 | None:intergenic | 10.0% |
!! | AAATTATATAGACCAAATTA+AGG | + | chr8.3:32318377-32318396 | None:intergenic | 15.0% |
!! | ATCTATAAAAAACTAAAACA+TGG | - | chr8.3:32317228-32317247 | MS.gene056489:intron | 15.0% |
!! | ATTCAATTTAAAGAATTTCA+AGG | - | chr8.3:32318775-32318794 | MS.gene056489:intron | 15.0% |
!! | GTAATCTATTTCATAAAAAT+TGG | + | chr8.3:32318414-32318433 | None:intergenic | 15.0% |
!!! | GAAATTTTTGTTTTTGTTTT+TGG | - | chr8.3:32317117-32317136 | MS.gene056489:CDS | 15.0% |
!!! | TAATCTTGTTATATATTAAG+TGG | + | chr8.3:32318478-32318497 | None:intergenic | 15.0% |
!! | TCAATGTAAACAAATATTCA+GGG | + | chr8.3:32317362-32317381 | None:intergenic | 20.0% |
!! | TTCAATGTAAACAAATATTC+AGG | + | chr8.3:32317363-32317382 | None:intergenic | 20.0% |
!! | TTTCTCTTTATATATAAGTC+CGG | - | chr8.3:32316630-32316649 | MS.gene056489:CDS | 20.0% |
!!! | TATTTTAGTTCTTTCAATGT+TGG | - | chr8.3:32316721-32316740 | MS.gene056489:intron | 20.0% |
!!! | TGTGTTTTTGTTTATAGTAA+CGG | - | chr8.3:32316658-32316677 | MS.gene056489:CDS | 20.0% |
! | AAAGCAATGTTGAATATATG+AGG | + | chr8.3:32316907-32316926 | None:intergenic | 25.0% |
! | AAGATTCAGATATTCAATGA+TGG | + | chr8.3:32317725-32317744 | None:intergenic | 25.0% |
! | AATTATTAGAACTTGAAGCA+TGG | + | chr8.3:32318327-32318346 | None:intergenic | 25.0% |
! | ACAATTGGATTTGGATTTAA+CGG | + | chr8.3:32317329-32317348 | None:intergenic | 25.0% |
! | AGATTCAGATATTCAATGAT+GGG | + | chr8.3:32317724-32317743 | None:intergenic | 25.0% |
! | ATTATTAGAACTTGAAGCAT+GGG | + | chr8.3:32318326-32318345 | None:intergenic | 25.0% |
! | ATTATTGTTTGTATCGTGTT+TGG | - | chr8.3:32317042-32317061 | MS.gene056489:CDS | 25.0% |
! | ATTCTTGAAAAAGTAGATCA+TGG | + | chr8.3:32318226-32318245 | None:intergenic | 25.0% |
! | CATATATTCAACATTGCTTT+AGG | - | chr8.3:32316907-32316926 | MS.gene056489:intron | 25.0% |
! | CTTTAAATTGAATAAAGGTC+AGG | + | chr8.3:32318768-32318787 | None:intergenic | 25.0% |
! | GATTATTACTGATAGTTCAT+TGG | - | chr8.3:32318861-32318880 | MS.gene056489:CDS | 25.0% |
! | TATATAGACCAAATTAAGGT+TGG | + | chr8.3:32318373-32318392 | None:intergenic | 25.0% |
! | TCTAATAATTCAGTATGACA+AGG | - | chr8.3:32318337-32318356 | MS.gene056489:intron | 25.0% |
! | TTCTTGAAAAAGTAGATCAT+GGG | + | chr8.3:32318225-32318244 | None:intergenic | 25.0% |
!!! | GATTTTAGTTCCTTCAATAT+GGG | - | chr8.3:32317411-32317430 | MS.gene056489:CDS | 25.0% |
!!! | TGATTTTAGTTCCTTCAATA+TGG | - | chr8.3:32317410-32317429 | MS.gene056489:CDS | 25.0% |
AAACAAATATTCAGGGACTA+TGG | + | chr8.3:32317355-32317374 | None:intergenic | 30.0% | |
AAATTGAATAAAGGTCAGGT+GGG | + | chr8.3:32318764-32318783 | None:intergenic | 30.0% | |
AATTGGATTTGGATTTAACG+GGG | + | chr8.3:32317327-32317346 | None:intergenic | 30.0% | |
AGAGAATTGAAGTTAAACCA+CGG | + | chr8.3:32318281-32318300 | None:intergenic | 30.0% | |
ATCAATGACGATGATGAAAT+TGG | - | chr8.3:32317808-32317827 | MS.gene056489:intron | 30.0% | |
CAATTGGATTTGGATTTAAC+GGG | + | chr8.3:32317328-32317347 | None:intergenic | 30.0% | |
CTAATCAACCAATGTAATGT+AGG | + | chr8.3:32316821-32316840 | None:intergenic | 30.0% | |
GATTCAGATATTCAATGATG+GGG | + | chr8.3:32317723-32317742 | None:intergenic | 30.0% | |
TAAATTGAATAAAGGTCAGG+TGG | + | chr8.3:32318765-32318784 | None:intergenic | 30.0% | |
TCAATGACGATGATGAAATT+GGG | - | chr8.3:32317809-32317828 | MS.gene056489:intron | 30.0% | |
TCCACATTAACAAATTTCAG+AGG | - | chr8.3:32317465-32317484 | MS.gene056489:CDS | 30.0% | |
TCTTGAAAAAGTAGATCATG+GGG | + | chr8.3:32318224-32318243 | None:intergenic | 30.0% | |
TCTTTATATATAAGTCCGGA+GGG | - | chr8.3:32316634-32316653 | MS.gene056489:CDS | 30.0% | |
TGTTTAGTCCAACCTTAATT+TGG | - | chr8.3:32318362-32318381 | MS.gene056489:intron | 30.0% | |
! | AACGGCAATTTTATGAGATT+TGG | - | chr8.3:32316676-32316695 | MS.gene056489:intron | 30.0% |
! | CTACATTACATTGGTTGATT+AGG | - | chr8.3:32316819-32316838 | MS.gene056489:intron | 30.0% |
!! | TCCTCTGAAATTTGTTAATG+TGG | + | chr8.3:32317469-32317488 | None:intergenic | 30.0% |
!! | TTTGGTTTATGCACTTTTGT+GGG | - | chr8.3:32317135-32317154 | MS.gene056489:CDS | 30.0% |
!!! | TCTGAATCTTTGTTTTTCTC+CGG | - | chr8.3:32317735-32317754 | MS.gene056489:CDS | 30.0% |
!!! | TTTTGGTTTATGCACTTTTG+TGG | - | chr8.3:32317134-32317153 | MS.gene056489:CDS | 30.0% |
AAACATTATCTGATGTGCCA+AGG | - | chr8.3:32318911-32318930 | MS.gene056489:CDS | 35.0% | |
AACATTACCCAAATCACGTT+TGG | - | chr8.3:32317871-32317890 | MS.gene056489:intron | 35.0% | |
AACATTATCTGATGTGCCAA+GGG | - | chr8.3:32318912-32318931 | MS.gene056489:CDS | 35.0% | |
AATTTAACCTTGGTTGTCGA+AGG | + | chr8.3:32318033-32318052 | None:intergenic | 35.0% | |
ACTGTTTGTACACATCATCA+AGG | + | chr8.3:32318187-32318206 | None:intergenic | 35.0% | |
ATCGTATTATCTCGAGCTAA+CGG | - | chr8.3:32317265-32317284 | MS.gene056489:intron | 35.0% | |
ATTAGCAGCGTCTTTAATGA+CGG | + | chr8.3:32317649-32317668 | None:intergenic | 35.0% | |
ATTGGATTTGGATTTAACGG+GGG | + | chr8.3:32317326-32317345 | None:intergenic | 35.0% | |
ATTTCAAGGATTTCCAGATG+AGG | - | chr8.3:32318789-32318808 | MS.gene056489:CDS | 35.0% | |
CAATGACGATGATGAAATTG+GGG | - | chr8.3:32317810-32317829 | MS.gene056489:intron | 35.0% | |
CTCTTTATATATAAGTCCGG+AGG | - | chr8.3:32316633-32316652 | MS.gene056489:CDS | 35.0% | |
CTTAGTGTAACCCATATTGA+AGG | + | chr8.3:32317424-32317443 | None:intergenic | 35.0% | |
CTTTCTTCGTTAGATAAGTC+AGG | + | chr8.3:32316798-32316817 | None:intergenic | 35.0% | |
GAAGAAAGCCTACATTACAT+TGG | - | chr8.3:32316810-32316829 | MS.gene056489:intron | 35.0% | |
GATCAGGTGCATTTATTTCA+AGG | + | chr8.3:32317840-32317859 | None:intergenic | 35.0% | |
GCATCTTATTGCACAATGTA+CGG | - | chr8.3:32318448-32318467 | MS.gene056489:intron | 35.0% | |
TAAACAAAAACACAACCCTC+CGG | + | chr8.3:32316652-32316671 | None:intergenic | 35.0% | |
TGGTTATGTATAGTACCATG+AGG | - | chr8.3:32316741-32316760 | MS.gene056489:intron | 35.0% | |
TTGTTCAAATATGTCCCTCA+TGG | + | chr8.3:32316878-32316897 | None:intergenic | 35.0% | |
! | ACGTGATTTGGGTAATGTTA+AGG | + | chr8.3:32317870-32317889 | None:intergenic | 35.0% |
! | ATGTTAAGGTACTCAAGATC+AGG | + | chr8.3:32317856-32317875 | None:intergenic | 35.0% |
! | GATGATTTTCAGCCTTCTTA+CGG | + | chr8.3:32317791-32317810 | None:intergenic | 35.0% |
! | GCTAATCAACATTGGTTATG+TGG | - | chr8.3:32317663-32317682 | MS.gene056489:CDS | 35.0% |
!! | GATTTGGATTTGTTGCTGTT+AGG | - | chr8.3:32316692-32316711 | MS.gene056489:intron | 35.0% |
!! | TTGATGATGTGTACAAACAG+TGG | - | chr8.3:32318186-32318205 | MS.gene056489:intron | 35.0% |
!! | TTTAAGTTGACACATTCCTG+AGG | + | chr8.3:32318938-32318957 | None:intergenic | 35.0% |
!!! | GTTGAGCTTGTTTTGCAAAA+AGG | - | chr8.3:32318820-32318839 | MS.gene056489:CDS | 35.0% |
AACAGTCACCAATCTTAGGA+TGG | - | chr8.3:32318704-32318723 | MS.gene056489:intron | 40.0% | |
AAGACGCTGCTAATCAACAT+TGG | - | chr8.3:32317655-32317674 | MS.gene056489:CDS | 40.0% | |
AAGCAATGAAGCACAAACAC+AGG | + | chr8.3:32317070-32317089 | None:intergenic | 40.0% | |
AATCAGCAGCATAGAGAGTA+AGG | + | chr8.3:32316526-32316545 | None:intergenic | 40.0% | |
ACAAGACAATTAGGCACACT+AGG | + | chr8.3:32318739-32318758 | None:intergenic | 40.0% | |
ACAGTCACCAATCTTAGGAT+GGG | - | chr8.3:32318705-32318724 | MS.gene056489:intron | 40.0% | |
ACCATAAAGACATAGGCGTT+AGG | - | chr8.3:32316769-32316788 | MS.gene056489:intron | 40.0% | |
ACCCCTTTACACAATCTTCT+TGG | - | chr8.3:32317973-32317992 | MS.gene056489:intron | 40.0% | |
ACTGTTCCTGAAAGCAACAA+AGG | + | chr8.3:32318690-32318709 | None:intergenic | 40.0% | |
AGGTGGGATACAAGACAATT+AGG | + | chr8.3:32318748-32318767 | None:intergenic | 40.0% | |
CAAACTTTGTCCAAGCTTTC+CGG | + | chr8.3:32317757-32317776 | None:intergenic | 40.0% | |
CAATTTCACCATAGAGACTG+AGG | + | chr8.3:32317591-32317610 | None:intergenic | 40.0% | |
CCATAAAGACATAGGCGTTA+GGG | - | chr8.3:32316770-32316789 | MS.gene056489:intron | 40.0% | |
CGCCAAGAAGATTGTGTAAA+GGG | + | chr8.3:32317978-32317997 | None:intergenic | 40.0% | |
CTATGGCACACAATTGGATT+TGG | + | chr8.3:32317338-32317357 | None:intergenic | 40.0% | |
GAATGTCGTGCTTCTTCTTT+AGG | + | chr8.3:32318888-32318907 | None:intergenic | 40.0% | |
GCCAAGAAGATTGTGTAAAG+GGG | + | chr8.3:32317977-32317996 | None:intergenic | 40.0% | |
TATGTATAGTACCATGAGGC+CGG | - | chr8.3:32316745-32316764 | MS.gene056489:intron | 40.0% | |
TCAAATATGTCCCTCATGGT+CGG | + | chr8.3:32316874-32316893 | None:intergenic | 40.0% | |
TCAACAAATGACACCTCATC+TGG | + | chr8.3:32318805-32318824 | None:intergenic | 40.0% | |
TCCAATGCAATCACATGTGT+CGG | + | chr8.3:32317005-32317024 | None:intergenic | 40.0% | |
TCTTTGTTCCTCAGTCTCTA+TGG | - | chr8.3:32317580-32317599 | MS.gene056489:CDS | 40.0% | |
TGGAAGTGAATAGTGTTCGA+GGG | + | chr8.3:32316571-32316590 | None:intergenic | 40.0% | |
! | ATTTTCAGCCTTCTTACGGA+AGG | + | chr8.3:32317787-32317806 | None:intergenic | 40.0% |
! | CTCTATGCTGCTGATTATTC+TGG | - | chr8.3:32316530-32316549 | MS.gene056489:CDS | 40.0% |
!! | TCAAGTCCTTTGTTGCTTTC+AGG | - | chr8.3:32318681-32318700 | MS.gene056489:intron | 40.0% |
!! | TTGTTTTTCTCCGGAAAGCT+TGG | - | chr8.3:32317744-32317763 | MS.gene056489:CDS | 40.0% |
AAGCTTGGCCAAACGTGATT+TGG | + | chr8.3:32317882-32317901 | None:intergenic | 45.0% | |
AAGTGAATAGTGTTCGAGGG+AGG | + | chr8.3:32316568-32316587 | None:intergenic | 45.0% | |
ACAATTAGGCACACTAGGCA+GGG | + | chr8.3:32318734-32318753 | None:intergenic | 45.0% | |
ACCGACACATGTGATTGCAT+TGG | - | chr8.3:32317001-32317020 | MS.gene056489:intron | 45.0% | |
AGCTTGGCCAAACGTGATTT+GGG | + | chr8.3:32317881-32317900 | None:intergenic | 45.0% | |
AGTTGCACATGCTGAAAGCT+TGG | + | chr8.3:32317897-32317916 | None:intergenic | 45.0% | |
CAGGAACAGTCACCAATCTT+AGG | - | chr8.3:32318700-32318719 | MS.gene056489:intron | 45.0% | |
CCCTAACGCCTATGTCTTTA+TGG | + | chr8.3:32316773-32316792 | None:intergenic | 45.0% | |
CGCCTATGTCTTTATGGTAC+CGG | + | chr8.3:32316767-32316786 | None:intergenic | 45.0% | |
GCGCCAAGAAGATTGTGTAA+AGG | + | chr8.3:32317979-32317998 | None:intergenic | 45.0% | |
GGTCACAGAACCAAACGATT+GGG | + | chr8.3:32317956-32317975 | None:intergenic | 45.0% | |
GTCACAGAACCAAACGATTG+GGG | + | chr8.3:32317955-32317974 | None:intergenic | 45.0% | |
GTGCAACTTACACAATGTCG+TGG | - | chr8.3:32317909-32317928 | MS.gene056489:intron | 45.0% | |
GTGGAAGTGAATAGTGTTCG+AGG | + | chr8.3:32316572-32316591 | None:intergenic | 45.0% | |
GTTCGAGGGAGGTTGAAATT+GGG | + | chr8.3:32316557-32316576 | None:intergenic | 45.0% | |
GTTGAAACCTTCGACAACCA+AGG | - | chr8.3:32318023-32318042 | MS.gene056489:intron | 45.0% | |
TCACAGAACCAAACGATTGG+GGG | + | chr8.3:32317954-32317973 | None:intergenic | 45.0% | |
TCATGCAGTCAGCATGTCAT+TGG | + | chr8.3:32317294-32317313 | None:intergenic | 45.0% | |
TGCGTGAATGCACTTCTTTG+TGG | - | chr8.3:32317694-32317713 | MS.gene056489:CDS | 45.0% | |
TGTTCGAGGGAGGTTGAAAT+TGG | + | chr8.3:32316558-32316577 | None:intergenic | 45.0% | |
TTAGGATGTCATCCCACCTA+TGG | - | chr8.3:32316837-32316856 | MS.gene056489:intron | 45.0% | |
TTATCCACACAGTCTGCAGT+AGG | - | chr8.3:32317188-32317207 | MS.gene056489:intron | 45.0% | |
!! | CATGGGACATTTCTGAAGCA+AGG | + | chr8.3:32318309-32318328 | None:intergenic | 45.0% |
!! | TCTCTCTGGGACTAAACATC+TGG | - | chr8.3:32317999-32318018 | MS.gene056489:intron | 45.0% |
!!! | TATTTCATAAAATTTTTAAA+AGG | + | chr8.3:32318530-32318549 | None:intergenic | 5.0% |
AAACATCCAACCCTCCACAG+TGG | - | chr8.3:32317615-32317634 | MS.gene056489:CDS | 50.0% | |
AACTAACCACTGTGGAGGGT+TGG | + | chr8.3:32317624-32317643 | None:intergenic | 50.0% | |
AAGGTCGAGTTCCTCAAGGT+AGG | + | chr8.3:32316507-32316526 | None:intergenic | 50.0% | |
AATCTTCTTGGCGCTCTCTC+TGG | - | chr8.3:32317985-32318004 | MS.gene056489:intron | 50.0% | |
ACCACGGAAGATTGAGCTCT+AGG | + | chr8.3:32318265-32318284 | None:intergenic | 50.0% | |
AGGGTAGCCCATCCTAAGAT+TGG | + | chr8.3:32318715-32318734 | None:intergenic | 50.0% | |
AGGTCGAGTTCCTCAAGGTA+GGG | + | chr8.3:32316506-32316525 | None:intergenic | 50.0% | |
ATCAGCAAGTGTGGGTTCTC+AGG | + | chr8.3:32316965-32316984 | None:intergenic | 50.0% | |
ATCTTCTTGGCGCTCTCTCT+GGG | - | chr8.3:32317986-32318005 | MS.gene056489:intron | 50.0% | |
CAGGGACTATGGCACACAAT+TGG | + | chr8.3:32317344-32317363 | None:intergenic | 50.0% | |
CCACTAATCTCGTTTCGCTC+AGG | - | chr8.3:32316588-32316607 | MS.gene056489:CDS | 50.0% | |
CCTGAGCGAAACGAGATTAG+TGG | + | chr8.3:32316591-32316610 | None:intergenic | 50.0% | |
CTGCAGACTGTGTGGATAAG+TGG | + | chr8.3:32317187-32317206 | None:intergenic | 50.0% | |
GACAATTAGGCACACTAGGC+AGG | + | chr8.3:32318735-32318754 | None:intergenic | 50.0% | |
GAGTAAGGTCGAGTTCCTCA+AGG | + | chr8.3:32316511-32316530 | None:intergenic | 50.0% | |
GATGTCTTCCCCCAATCGTT+TGG | - | chr8.3:32317943-32317962 | MS.gene056489:intron | 50.0% | |
GGCAAACTAACCACTGTGGA+GGG | + | chr8.3:32317628-32317647 | None:intergenic | 50.0% | |
GGCCGGTACCATAAAGACAT+AGG | - | chr8.3:32316762-32316781 | MS.gene056489:intron | 50.0% | |
GGGTCACAGAACCAAACGAT+TGG | + | chr8.3:32317957-32317976 | None:intergenic | 50.0% | |
GTGTACAAACAGTGGCTGCT+TGG | - | chr8.3:32318194-32318213 | MS.gene056489:intron | 50.0% | |
TCAGCAAGTGTGGGTTCTCA+GGG | + | chr8.3:32316964-32316983 | None:intergenic | 50.0% | |
TCAGCCTTCTTACGGAAGGT+GGG | + | chr8.3:32317783-32317802 | None:intergenic | 50.0% | |
TCATCCCACCTATGGTGCAT+AGG | - | chr8.3:32316845-32316864 | MS.gene056489:intron | 50.0% | |
TGACGGCAAACTAACCACTG+TGG | + | chr8.3:32317632-32317651 | None:intergenic | 50.0% | |
TGATAAGAGCCGTGCCTACT+CGG | - | chr8.3:32316451-32316470 | MS.gene056489:CDS | 50.0% | |
TTCAGCCTTCTTACGGAAGG+TGG | + | chr8.3:32317784-32317803 | None:intergenic | 50.0% | |
TTCCTCAAGGTAGGGTCCAA+TGG | + | chr8.3:32316498-32316517 | None:intergenic | 50.0% | |
! | AACCCACACTTGCTGATCGT+AGG | - | chr8.3:32316968-32316987 | MS.gene056489:intron | 50.0% |
!! | TCTTTATGGTACCGGCCTCA+TGG | + | chr8.3:32316759-32316778 | None:intergenic | 50.0% |
ACGCCTACGATCAGCAAGTG+TGG | + | chr8.3:32316974-32316993 | None:intergenic | 55.0% | |
CGCCTACGATCAGCAAGTGT+GGG | + | chr8.3:32316973-32316992 | None:intergenic | 55.0% | |
CGGCAAACTAACCACTGTGG+AGG | + | chr8.3:32317629-32317648 | None:intergenic | 55.0% | |
CTCAAGGTAGGGTCCAATGG+CGG | + | chr8.3:32316495-32316514 | None:intergenic | 55.0% | |
GCCTAGAGCTCAATCTTCCG+TGG | - | chr8.3:32318261-32318280 | MS.gene056489:intron | 55.0% | |
GTCGCCTATGCACCATAGGT+GGG | + | chr8.3:32316852-32316871 | None:intergenic | 55.0% | |
GTGTCCCACCTTCCGTAAGA+AGG | - | chr8.3:32317776-32317795 | MS.gene056489:intron | 55.0% | |
TGACACATTCCTGAGGCCCT+TGG | + | chr8.3:32318931-32318950 | None:intergenic | 55.0% | |
AACCCACGCCTCAACCGAGT+AGG | + | chr8.3:32316468-32316487 | None:intergenic | 60.0% | |
ACGCCTCAACCGAGTAGGCA+CGG | + | chr8.3:32316463-32316482 | None:intergenic | 60.0% | |
CAAGTGTGGGTTCTCAGGGC+TGG | + | chr8.3:32316960-32316979 | None:intergenic | 60.0% | |
CGCCATTGGACCCTACCTTG+AGG | - | chr8.3:32316493-32316512 | MS.gene056489:CDS | 60.0% | |
GACGCCTACTGCAGACTGTG+TGG | + | chr8.3:32317195-32317214 | None:intergenic | 60.0% | |
GCATAGGCGACCGACCATGA+GGG | - | chr8.3:32316861-32316880 | MS.gene056489:intron | 60.0% | |
GGTCGCCTATGCACCATAGG+TGG | + | chr8.3:32316853-32316872 | None:intergenic | 60.0% | |
GTCGGTCGCCTATGCACCAT+AGG | + | chr8.3:32316856-32316875 | None:intergenic | 60.0% | |
TCTGATGTGCCAAGGGCCTC+AGG | - | chr8.3:32318919-32318938 | MS.gene056489:CDS | 60.0% | |
TGCATAGGCGACCGACCATG+AGG | - | chr8.3:32316860-32316879 | MS.gene056489:intron | 60.0% | |
TGCCTACTCGGTTGAGGCGT+GGG | - | chr8.3:32316463-32316482 | MS.gene056489:CDS | 60.0% | |
GAGCCGTGCCTACTCGGTTG+AGG | - | chr8.3:32316457-32316476 | MS.gene056489:CDS | 65.0% | |
GTGCCTACTCGGTTGAGGCG+TGG | - | chr8.3:32316462-32316481 | MS.gene056489:CDS | 65.0% | |
GCGTGGGTTCGTGCCGCCAT+TGG | - | chr8.3:32316479-32316498 | MS.gene056489:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 32316419 | 32318966 | 32316419 | ID=MS.gene056489 |
chr8.3 | mRNA | 32316419 | 32318966 | 32316419 | ID=MS.gene056489.t1;Parent=MS.gene056489 |
chr8.3 | exon | 32318776 | 32318966 | 32318776 | ID=MS.gene056489.t1.exon1;Parent=MS.gene056489.t1 |
chr8.3 | CDS | 32318776 | 32318966 | 32318776 | ID=cds.MS.gene056489.t1;Parent=MS.gene056489.t1 |
chr8.3 | exon | 32317341 | 32317791 | 32317341 | ID=MS.gene056489.t1.exon2;Parent=MS.gene056489.t1 |
chr8.3 | CDS | 32317341 | 32317791 | 32317341 | ID=cds.MS.gene056489.t1;Parent=MS.gene056489.t1 |
chr8.3 | exon | 32317027 | 32317179 | 32317027 | ID=MS.gene056489.t1.exon3;Parent=MS.gene056489.t1 |
chr8.3 | CDS | 32317027 | 32317179 | 32317027 | ID=cds.MS.gene056489.t1;Parent=MS.gene056489.t1 |
chr8.3 | exon | 32316419 | 32316682 | 32316419 | ID=MS.gene056489.t1.exon4;Parent=MS.gene056489.t1 |
chr8.3 | CDS | 32316419 | 32316682 | 32316419 | ID=cds.MS.gene056489.t1;Parent=MS.gene056489.t1 |
Gene Sequence |
Protein sequence |