Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83731.t1 | RHN40797.1 | 73.7 | 353 | 90 | 3 | 1 | 352 | 1 | 351 | 6.30E-139 | 503.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83731.t1 | Q8H1R7 | 28.6 | 346 | 225 | 9 | 16 | 352 | 87 | 419 | 2.2e-23 | 111.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83731.t1 | A0A396GQ43 | 73.7 | 353 | 90 | 3 | 1 | 352 | 1 | 351 | 4.6e-139 | 503.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056464 | MS.gene83731 | 0.807395 | 5.16E-50 | -1.69E-46 |
MS.gene056489 | MS.gene83731 | 0.961638 | 6.19E-120 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83731.t1 | MTR_8g445780 | 74.593 | 307 | 75 | 3 | 1 | 306 | 86 | 390 | 1.18e-159 | 452 |
MS.gene83731.t1 | MTR_8g014260 | 63.305 | 357 | 125 | 5 | 1 | 352 | 96 | 451 | 8.07e-141 | 407 |
MS.gene83731.t1 | MTR_4g024710 | 66.207 | 290 | 97 | 1 | 64 | 352 | 58 | 347 | 2.14e-126 | 367 |
MS.gene83731.t1 | MTR_8g014210 | 73.707 | 232 | 60 | 1 | 121 | 352 | 1 | 231 | 8.44e-116 | 335 |
MS.gene83731.t1 | MTR_4g024745 | 64.000 | 275 | 98 | 1 | 62 | 335 | 10 | 284 | 3.39e-109 | 320 |
MS.gene83731.t1 | MTR_8g062270 | 50.000 | 348 | 152 | 10 | 16 | 351 | 116 | 453 | 3.34e-91 | 280 |
MS.gene83731.t1 | MTR_2g083840 | 49.584 | 361 | 168 | 9 | 1 | 352 | 102 | 457 | 8.17e-91 | 280 |
MS.gene83731.t1 | MTR_8g468810 | 47.934 | 363 | 172 | 11 | 1 | 352 | 107 | 463 | 7.70e-86 | 267 |
MS.gene83731.t1 | MTR_8g058970 | 49.713 | 348 | 158 | 10 | 18 | 352 | 134 | 477 | 2.98e-85 | 266 |
MS.gene83731.t1 | MTR_8g468840 | 45.938 | 357 | 177 | 10 | 3 | 350 | 99 | 448 | 2.37e-80 | 252 |
MS.gene83731.t1 | MTR_5g092960 | 46.175 | 366 | 173 | 11 | 3 | 352 | 105 | 462 | 6.85e-79 | 249 |
MS.gene83731.t1 | MTR_4g032730 | 43.651 | 378 | 173 | 11 | 3 | 352 | 102 | 467 | 7.05e-73 | 233 |
MS.gene83731.t1 | MTR_8g467800 | 44.476 | 353 | 170 | 11 | 16 | 352 | 111 | 453 | 5.95e-72 | 231 |
MS.gene83731.t1 | MTR_8g468760 | 43.333 | 360 | 155 | 11 | 3 | 351 | 97 | 418 | 1.26e-68 | 221 |
MS.gene83731.t1 | MTR_8g014160 | 40.449 | 356 | 152 | 4 | 1 | 352 | 126 | 425 | 1.32e-67 | 219 |
MS.gene83731.t1 | MTR_8g468810 | 48.339 | 271 | 128 | 8 | 1 | 265 | 107 | 371 | 1.32e-60 | 199 |
MS.gene83731.t1 | MTR_8g077460 | 67.586 | 145 | 47 | 0 | 208 | 352 | 231 | 375 | 1.17e-59 | 196 |
MS.gene83731.t1 | MTR_8g077460 | 55.556 | 135 | 60 | 0 | 1 | 135 | 92 | 226 | 2.92e-38 | 140 |
MS.gene83731.t1 | MTR_8g469020 | 39.071 | 366 | 192 | 12 | 9 | 352 | 95 | 451 | 2.01e-58 | 196 |
MS.gene83731.t1 | MTR_8g058965 | 42.373 | 354 | 176 | 13 | 19 | 352 | 111 | 456 | 9.09e-58 | 194 |
MS.gene83731.t1 | MTR_8g062310 | 39.884 | 346 | 176 | 13 | 15 | 352 | 107 | 428 | 4.52e-54 | 184 |
MS.gene83731.t1 | MTR_5g092960 | 45.788 | 273 | 132 | 8 | 3 | 265 | 105 | 371 | 4.66e-50 | 172 |
MS.gene83731.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 1.80e-49 | 169 |
MS.gene83731.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 1.96e-49 | 168 |
MS.gene83731.t1 | MTR_8g468810 | 48.131 | 214 | 106 | 4 | 1 | 214 | 107 | 315 | 2.52e-49 | 169 |
MS.gene83731.t1 | MTR_8g062010 | 39.296 | 341 | 182 | 12 | 19 | 352 | 108 | 430 | 1.76e-48 | 169 |
MS.gene83731.t1 | MTR_8g062080 | 37.572 | 346 | 184 | 14 | 19 | 352 | 120 | 445 | 1.86e-46 | 164 |
MS.gene83731.t1 | MTR_8g070950 | 38.000 | 350 | 176 | 16 | 20 | 352 | 109 | 434 | 9.71e-46 | 162 |
MS.gene83731.t1 | MTR_4g050250 | 42.105 | 304 | 145 | 11 | 19 | 298 | 123 | 419 | 1.75e-45 | 160 |
MS.gene83731.t1 | MTR_8g062300 | 33.422 | 374 | 194 | 13 | 16 | 352 | 122 | 477 | 9.56e-36 | 135 |
MS.gene83731.t1 | MTR_8g014230 | 61.290 | 93 | 35 | 1 | 260 | 352 | 13 | 104 | 1.21e-30 | 112 |
MS.gene83731.t1 | MTR_8g467800 | 44.175 | 206 | 101 | 7 | 16 | 214 | 111 | 309 | 8.77e-30 | 117 |
MS.gene83731.t1 | MTR_5g084070 | 32.335 | 334 | 204 | 12 | 19 | 344 | 100 | 419 | 3.65e-26 | 108 |
MS.gene83731.t1 | MTR_8g467790 | 35.587 | 281 | 137 | 14 | 20 | 293 | 246 | 489 | 2.87e-25 | 106 |
MS.gene83731.t1 | MTR_2g086020 | 47.183 | 142 | 71 | 4 | 214 | 352 | 175 | 315 | 3.74e-24 | 101 |
MS.gene83731.t1 | MTR_4g113810 | 39.024 | 164 | 97 | 2 | 1 | 163 | 1 | 162 | 2.42e-22 | 92.8 |
MS.gene83731.t1 | MTR_5g021550 | 63.492 | 63 | 22 | 1 | 1 | 63 | 101 | 162 | 8.04e-19 | 82.8 |
MS.gene83731.t1 | MTR_8g014290 | 64.516 | 62 | 21 | 1 | 3 | 64 | 100 | 160 | 1.06e-18 | 82.4 |
MS.gene83731.t1 | MTR_5g080710 | 30.473 | 338 | 209 | 13 | 19 | 344 | 123 | 446 | 3.07e-18 | 85.9 |
MS.gene83731.t1 | MTR_1g038710 | 29.377 | 337 | 197 | 14 | 12 | 320 | 104 | 427 | 1.50e-16 | 80.9 |
MS.gene83731.t1 | MTR_1g041245 | 26.453 | 344 | 189 | 10 | 17 | 352 | 99 | 386 | 3.97e-16 | 79.3 |
MS.gene83731.t1 | MTR_4g056040 | 28.011 | 357 | 209 | 14 | 19 | 346 | 127 | 464 | 9.14e-16 | 78.6 |
MS.gene83731.t1 | MTR_4g056070 | 27.515 | 338 | 176 | 12 | 10 | 306 | 128 | 437 | 2.00e-15 | 77.4 |
MS.gene83731.t1 | MTR_8g014220 | 41.071 | 112 | 53 | 4 | 1 | 108 | 58 | 160 | 8.07e-14 | 68.9 |
MS.gene83731.t1 | MTR_5g008950 | 27.778 | 234 | 132 | 9 | 148 | 352 | 140 | 365 | 8.62e-14 | 72.0 |
MS.gene83731.t1 | MTR_3g108560 | 26.254 | 339 | 188 | 11 | 19 | 351 | 106 | 388 | 1.01e-12 | 68.9 |
MS.gene83731.t1 | MTR_7g032380 | 33.636 | 110 | 70 | 1 | 246 | 352 | 247 | 356 | 1.24e-11 | 65.5 |
MS.gene83731.t1 | MTR_5g039950 | 27.500 | 320 | 194 | 10 | 16 | 323 | 97 | 390 | 1.91e-11 | 65.1 |
MS.gene83731.t1 | MTR_4g080787 | 29.293 | 297 | 173 | 15 | 79 | 351 | 180 | 463 | 3.35e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83731.t1 | AT4G26340 | 28.902 | 346 | 224 | 10 | 16 | 352 | 87 | 419 | 8.39e-27 | 110 |
MS.gene83731.t1 | AT4G10420 | 27.729 | 339 | 217 | 11 | 22 | 351 | 2 | 321 | 8.36e-23 | 97.8 |
MS.gene83731.t1 | AT4G00160 | 31.356 | 354 | 200 | 18 | 22 | 352 | 109 | 442 | 1.64e-22 | 98.6 |
MS.gene83731.t1 | AT3G52680 | 31.143 | 350 | 207 | 16 | 22 | 352 | 111 | 445 | 1.38e-21 | 95.9 |
MS.gene83731.t1 | AT1G32375 | 26.087 | 345 | 231 | 10 | 19 | 352 | 91 | 422 | 7.47e-21 | 93.6 |
MS.gene83731.t1 | AT1G32375 | 26.087 | 345 | 231 | 10 | 19 | 352 | 91 | 422 | 7.47e-21 | 93.6 |
MS.gene83731.t1 | AT3G26920 | 29.395 | 347 | 220 | 12 | 15 | 351 | 8 | 339 | 1.56e-20 | 91.7 |
MS.gene83731.t1 | AT3G26920 | 29.395 | 347 | 220 | 12 | 15 | 351 | 8 | 339 | 1.56e-20 | 91.7 |
MS.gene83731.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene83731.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene83731.t1 | AT4G10400 | 26.420 | 352 | 225 | 13 | 9 | 351 | 82 | 408 | 9.31e-20 | 90.1 |
MS.gene83731.t1 | AT3G50710 | 29.261 | 352 | 209 | 16 | 19 | 349 | 92 | 424 | 8.93e-19 | 87.4 |
MS.gene83731.t1 | AT5G56390 | 29.206 | 315 | 197 | 12 | 50 | 351 | 123 | 424 | 7.85e-18 | 84.7 |
MS.gene83731.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene83731.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene83731.t1 | AT3G54910 | 28.977 | 352 | 222 | 17 | 9 | 352 | 42 | 373 | 9.77e-18 | 84.0 |
MS.gene83731.t1 | AT1G78750 | 26.062 | 353 | 226 | 14 | 19 | 349 | 116 | 455 | 9.96e-18 | 84.3 |
MS.gene83731.t1 | AT1G78750 | 26.062 | 353 | 226 | 14 | 19 | 349 | 116 | 455 | 9.96e-18 | 84.3 |
MS.gene83731.t1 | AT5G38570 | 25.356 | 351 | 207 | 11 | 5 | 351 | 76 | 375 | 1.23e-17 | 83.6 |
MS.gene83731.t1 | AT5G56380 | 29.805 | 359 | 208 | 16 | 19 | 351 | 98 | 438 | 3.22e-17 | 82.8 |
MS.gene83731.t1 | AT5G56380 | 29.805 | 359 | 208 | 16 | 19 | 351 | 98 | 438 | 3.22e-17 | 82.8 |
MS.gene83731.t1 | AT5G56560 | 25.967 | 362 | 234 | 14 | 3 | 352 | 79 | 418 | 4.55e-17 | 82.4 |
MS.gene83731.t1 | AT5G50270 | 28.443 | 334 | 205 | 15 | 19 | 334 | 91 | 408 | 1.31e-16 | 80.9 |
MS.gene83731.t1 | AT5G53840 | 24.859 | 354 | 236 | 13 | 12 | 349 | 98 | 437 | 2.60e-16 | 80.1 |
MS.gene83731.t1 | AT5G56440 | 26.667 | 360 | 216 | 15 | 19 | 351 | 91 | 429 | 5.42e-16 | 79.0 |
MS.gene83731.t1 | AT4G26350 | 25.753 | 365 | 222 | 12 | 15 | 352 | 86 | 428 | 2.61e-15 | 77.0 |
MS.gene83731.t1 | AT5G53635 | 25.641 | 351 | 223 | 13 | 21 | 351 | 93 | 425 | 8.12e-15 | 75.5 |
MS.gene83731.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 11 | 365 | 1.21e-14 | 74.7 |
MS.gene83731.t1 | AT5G60610 | 27.003 | 337 | 178 | 12 | 19 | 321 | 85 | 387 | 1.44e-14 | 74.7 |
MS.gene83731.t1 | AT5G60610 | 27.003 | 337 | 178 | 12 | 19 | 321 | 85 | 387 | 1.44e-14 | 74.7 |
MS.gene83731.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 84 | 438 | 1.50e-14 | 74.7 |
MS.gene83731.t1 | AT2G26030 | 25.543 | 368 | 236 | 16 | 7 | 349 | 84 | 438 | 1.50e-14 | 74.7 |
MS.gene83731.t1 | AT3G26920 | 26.377 | 345 | 194 | 12 | 15 | 351 | 8 | 300 | 2.83e-14 | 72.8 |
MS.gene83731.t1 | AT5G38590 | 26.590 | 346 | 214 | 15 | 7 | 337 | 81 | 401 | 6.00e-14 | 72.8 |
MS.gene83731.t1 | AT1G66290 | 24.935 | 385 | 214 | 16 | 3 | 349 | 103 | 450 | 8.59e-14 | 72.4 |
MS.gene83731.t1 | AT1G06630 | 28.195 | 266 | 179 | 9 | 1 | 262 | 95 | 352 | 1.40e-13 | 71.6 |
MS.gene83731.t1 | AT1G06630 | 28.195 | 266 | 179 | 9 | 1 | 262 | 95 | 352 | 1.40e-13 | 71.6 |
MS.gene83731.t1 | AT1G51370 | 26.857 | 350 | 214 | 16 | 17 | 347 | 104 | 430 | 1.40e-13 | 72.0 |
MS.gene83731.t1 | AT5G56370 | 26.136 | 352 | 214 | 12 | 22 | 351 | 93 | 420 | 1.85e-13 | 71.6 |
MS.gene83731.t1 | AT5G56370 | 26.136 | 352 | 214 | 12 | 22 | 351 | 93 | 420 | 1.85e-13 | 71.6 |
MS.gene83731.t1 | AT5G56700 | 26.183 | 317 | 201 | 12 | 19 | 320 | 52 | 350 | 3.54e-13 | 70.1 |
MS.gene83731.t1 | AT2G26030 | 25.606 | 371 | 237 | 16 | 7 | 349 | 84 | 443 | 4.52e-13 | 70.5 |
MS.gene83731.t1 | AT1G66310 | 25.348 | 359 | 225 | 13 | 11 | 349 | 104 | 439 | 7.85e-13 | 69.7 |
MS.gene83731.t1 | AT5G44850 | 24.496 | 347 | 178 | 13 | 19 | 349 | 50 | 328 | 1.05e-12 | 68.6 |
MS.gene83731.t1 | AT2G26860 | 30.061 | 326 | 187 | 15 | 19 | 321 | 90 | 397 | 1.25e-12 | 68.9 |
MS.gene83731.t1 | AT2G26860 | 30.061 | 326 | 187 | 15 | 19 | 321 | 90 | 397 | 1.25e-12 | 68.9 |
MS.gene83731.t1 | AT3G49020 | 28.477 | 302 | 171 | 16 | 77 | 352 | 163 | 445 | 1.64e-12 | 68.6 |
MS.gene83731.t1 | AT4G13965 | 29.538 | 325 | 191 | 17 | 42 | 349 | 117 | 420 | 1.71e-12 | 68.6 |
MS.gene83731.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 2 | 303 | 105 | 396 | 6.01e-12 | 67.4 |
MS.gene83731.t1 | AT5G56800 | 25.352 | 284 | 181 | 12 | 83 | 352 | 78 | 344 | 6.99e-12 | 66.2 |
MS.gene83731.t1 | AT5G56560 | 26.159 | 302 | 186 | 13 | 68 | 352 | 326 | 607 | 7.72e-12 | 67.0 |
MS.gene83731.t1 | AT2G04230 | 26.273 | 373 | 235 | 19 | 3 | 352 | 91 | 446 | 8.48e-12 | 66.6 |
MS.gene83731.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 1 | 302 | 323 | 614 | 9.03e-12 | 66.6 |
MS.gene83731.t1 | AT1G69630 | 24.857 | 350 | 228 | 13 | 17 | 344 | 107 | 443 | 9.10e-12 | 66.2 |
MS.gene83731.t1 | AT3G60040 | 27.019 | 322 | 185 | 15 | 1 | 302 | 321 | 612 | 9.18e-12 | 66.6 |
MS.gene83731.t1 | AT3G60040 | 27.103 | 321 | 184 | 15 | 2 | 302 | 324 | 614 | 9.73e-12 | 66.6 |
MS.gene83731.t1 | AT3G60040 | 27.103 | 321 | 184 | 15 | 2 | 302 | 325 | 615 | 1.03e-11 | 66.6 |
MS.gene83731.t1 | AT5G44950 | 23.121 | 346 | 235 | 12 | 22 | 345 | 96 | 432 | 2.71e-11 | 65.1 |
MS.gene83731.t1 | AT1G05080 | 26.503 | 366 | 207 | 18 | 19 | 352 | 104 | 439 | 2.82e-11 | 64.7 |
MS.gene83731.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene83731.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene83731.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene83731.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene83731.t1 | AT4G27050 | 26.455 | 378 | 226 | 17 | 2 | 351 | 99 | 452 | 3.12e-11 | 64.7 |
MS.gene83731.t1 | AT5G41840 | 26.103 | 272 | 167 | 8 | 22 | 262 | 117 | 385 | 5.49e-11 | 64.3 |
MS.gene83731.t1 | AT3G52690 | 28.571 | 315 | 190 | 14 | 54 | 351 | 1 | 297 | 8.71e-11 | 62.8 |
MS.gene83731.t1 | AT5G62970 | 27.654 | 358 | 208 | 16 | 19 | 351 | 117 | 448 | 9.72e-11 | 63.2 |
Find 93 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATGACGATGATGAAAT+TGG | 0.200397 | 8.3:-32331246 | MS.gene83731:CDS |
GAATGTCGTGCTTCTTCTTT+AGG | 0.213887 | 8.3:+32330170 | None:intergenic |
CAAACTTTGTCCAAGCTTTC+CGG | 0.219592 | 8.3:+32331300 | None:intergenic |
AATCTTCTTGGCGCTCTCTC+TGG | 0.240943 | 8.3:-32331069 | MS.gene83731:CDS |
TGTTCGAGGGAGGTTGAAAT+TGG | 0.258153 | 8.3:+32332498 | None:intergenic |
CTCTATGCTGCTGATTATTC+TGG | 0.274848 | 8.3:-32332523 | MS.gene83731:CDS |
AAGCTTGGCCAAACGTGATT+TGG | 0.281671 | 8.3:+32331175 | None:intergenic |
CAGGAACAGTCACCAATCTT+AGG | 0.285145 | 8.3:-32330355 | MS.gene83731:CDS |
TCTTTGTTCCTCAGTCTCTA+TGG | 0.292907 | 8.3:-32331474 | MS.gene83731:intron |
ACCCCTTTACACAATCTTCT+TGG | 0.319899 | 8.3:-32331081 | MS.gene83731:CDS |
CGCCAAGAAGATTGTGTAAA+GGG | 0.353681 | 8.3:+32331079 | None:intergenic |
AAATTCTTTAAATTGAATAA+AGG | 0.358875 | 8.3:+32330285 | None:intergenic |
GATTATTACTGATAGTTCAT+TGG | 0.362559 | 8.3:-32330194 | MS.gene83731:CDS |
AACATTACCCAAATCACGTT+TGG | 0.385489 | 8.3:-32331183 | MS.gene83731:CDS |
GATCAGGTGCATTTATTTCA+AGG | 0.388283 | 8.3:+32331217 | None:intergenic |
TCAATGACGATGATGAAATT+GGG | 0.390472 | 8.3:-32331245 | MS.gene83731:CDS |
ATCTTCTTGGCGCTCTCTCT+GGG | 0.391095 | 8.3:-32331068 | MS.gene83731:CDS |
AGCTTGGCCAAACGTGATTT+GGG | 0.393277 | 8.3:+32331176 | None:intergenic |
ATTCAATTTAAAGAATTTCA+AGG | 0.397138 | 8.3:-32330280 | MS.gene83731:CDS |
GACAATTAGGCACACTAGGC+AGG | 0.409203 | 8.3:+32330323 | None:intergenic |
AGGTGGGATACAAGACAATT+AGG | 0.409698 | 8.3:+32330310 | None:intergenic |
ACGTGATTTGGGTAATGTTA+AGG | 0.410654 | 8.3:+32331187 | None:intergenic |
GCGTGGGTTCGTGCCGCCAT+TGG | 0.432560 | 8.3:-32332574 | MS.gene83731:CDS |
TGCCTACTCGGTTGAGGCGT+GGG | 0.438185 | 8.3:-32332590 | MS.gene83731:CDS |
GGTCACAGAACCAAACGATT+GGG | 0.444807 | 8.3:+32331101 | None:intergenic |
TGCGTGAATGCACTTCTTTG+TGG | 0.449824 | 8.3:-32331360 | MS.gene83731:CDS |
CTTTAAATTGAATAAAGGTC+AGG | 0.450396 | 8.3:+32330290 | None:intergenic |
TCTGATGTGCCAAGGGCCTC+AGG | 0.454537 | 8.3:-32330136 | MS.gene83731:CDS |
AATCAGCAGCATAGAGAGTA+AGG | 0.457220 | 8.3:+32332530 | None:intergenic |
CCACTAATCTCGTTTCGCTC+AGG | 0.457239 | 8.3:-32332465 | MS.gene83731:intron |
CCTGAGCGAAACGAGATTAG+TGG | 0.459933 | 8.3:+32332465 | None:intergenic |
TCTCTCTGGGACTAAACATC+TGG | 0.472916 | 8.3:-32331055 | MS.gene83731:CDS |
GTGGAAGTGAATAGTGTTCG+AGG | 0.474616 | 8.3:+32332484 | None:intergenic |
TCAACAAATGACACCTCATC+TGG | 0.479159 | 8.3:+32330253 | None:intergenic |
AAGATTCAGATATTCAATGA+TGG | 0.484570 | 8.3:+32331332 | None:intergenic |
TTCAGCCTTCTTACGGAAGG+TGG | 0.494049 | 8.3:+32331273 | None:intergenic |
GTGTCCCACCTTCCGTAAGA+AGG | 0.494377 | 8.3:-32331278 | MS.gene83731:CDS |
ATGTTAAGGTACTCAAGATC+AGG | 0.497530 | 8.3:+32331201 | None:intergenic |
TGATAAGAGCCGTGCCTACT+CGG | 0.510408 | 8.3:-32332602 | MS.gene83731:CDS |
AGATTCAGATATTCAATGAT+GGG | 0.510683 | 8.3:+32331333 | None:intergenic |
AGGGTAGCCCATCCTAAGAT+TGG | 0.511860 | 8.3:+32330343 | None:intergenic |
AACTAACCACTGTGGAGGGT+TGG | 0.518426 | 8.3:+32331433 | None:intergenic |
TGACACATTCCTGAGGCCCT+TGG | 0.520521 | 8.3:+32330127 | None:intergenic |
TTCCTCAAGGTAGGGTCCAA+TGG | 0.522965 | 8.3:+32332558 | None:intergenic |
GCTAATCAACATTGGTTATG+TGG | 0.529952 | 8.3:-32331391 | MS.gene83731:CDS |
ATTATTAGAACTTGAAGCAT+GGG | 0.531928 | 8.3:+32330731 | None:intergenic |
AACAGTCACCAATCTTAGGA+TGG | 0.532918 | 8.3:-32330351 | MS.gene83731:CDS |
ACCACGGAAGATTGAGCTCT+AGG | 0.536567 | 8.3:+32330792 | None:intergenic |
GTGCCTACTCGGTTGAGGCG+TGG | 0.538857 | 8.3:-32332591 | MS.gene83731:CDS |
TAAATTGAATAAAGGTCAGG+TGG | 0.546131 | 8.3:+32330293 | None:intergenic |
AATTTAACCTTGGTTGTCGA+AGG | 0.549352 | 8.3:+32331024 | None:intergenic |
GTTCGAGGGAGGTTGAAATT+GGG | 0.549391 | 8.3:+32332499 | None:intergenic |
GAGCCGTGCCTACTCGGTTG+AGG | 0.550377 | 8.3:-32332596 | MS.gene83731:CDS |
GGGTCACAGAACCAAACGAT+TGG | 0.554684 | 8.3:+32331100 | None:intergenic |
GCGCCAAGAAGATTGTGTAA+AGG | 0.556529 | 8.3:+32331078 | None:intergenic |
ATTAGCAGCGTCTTTAATGA+CGG | 0.558646 | 8.3:+32331408 | None:intergenic |
AGGTCGAGTTCCTCAAGGTA+GGG | 0.564740 | 8.3:+32332550 | None:intergenic |
AATTATTAGAACTTGAAGCA+TGG | 0.568636 | 8.3:+32330730 | None:intergenic |
GCCTAGAGCTCAATCTTCCG+TGG | 0.569832 | 8.3:-32330793 | MS.gene83731:CDS |
TGGAAGTGAATAGTGTTCGA+GGG | 0.574413 | 8.3:+32332485 | None:intergenic |
ACAAGACAATTAGGCACACT+AGG | 0.575239 | 8.3:+32330319 | None:intergenic |
GTCACAGAACCAAACGATTG+GGG | 0.575766 | 8.3:+32331102 | None:intergenic |
AAACATTATCTGATGTGCCA+AGG | 0.577099 | 8.3:-32330144 | MS.gene83731:CDS |
AAGACGCTGCTAATCAACAT+TGG | 0.579385 | 8.3:-32331399 | MS.gene83731:CDS |
CAATGACGATGATGAAATTG+GGG | 0.582204 | 8.3:-32331244 | MS.gene83731:CDS |
AACATTATCTGATGTGCCAA+GGG | 0.587776 | 8.3:-32330143 | MS.gene83731:CDS |
AGTTGCACATGCTGAAAGCT+TGG | 0.589013 | 8.3:+32331160 | None:intergenic |
TCAGCCTTCTTACGGAAGGT+GGG | 0.597759 | 8.3:+32331274 | None:intergenic |
GAGTAAGGTCGAGTTCCTCA+AGG | 0.603153 | 8.3:+32332545 | None:intergenic |
GGCAAACTAACCACTGTGGA+GGG | 0.607532 | 8.3:+32331429 | None:intergenic |
CGGCAAACTAACCACTGTGG+AGG | 0.608277 | 8.3:+32331428 | None:intergenic |
ACAATTAGGCACACTAGGCA+GGG | 0.608364 | 8.3:+32330324 | None:intergenic |
ACAGTCACCAATCTTAGGAT+GGG | 0.609558 | 8.3:-32330350 | MS.gene83731:CDS |
ACGCCTCAACCGAGTAGGCA+CGG | 0.612100 | 8.3:+32332593 | None:intergenic |
GTGTACAAACAGTGGCTGCT+TGG | 0.612411 | 8.3:-32330860 | MS.gene83731:intron |
CATGGGACATTTCTGAAGCA+AGG | 0.613005 | 8.3:+32330748 | None:intergenic |
ATTTCAAGGATTTCCAGATG+AGG | 0.618723 | 8.3:-32330266 | MS.gene83731:CDS |
TCTAATAATTCAGTATGACA+AGG | 0.620543 | 8.3:-32330717 | MS.gene83731:intron |
GTTGAAACCTTCGACAACCA+AGG | 0.628242 | 8.3:-32331031 | MS.gene83731:intron |
CGCCATTGGACCCTACCTTG+AGG | 0.631023 | 8.3:-32332560 | MS.gene83731:CDS |
AAGTGAATAGTGTTCGAGGG+AGG | 0.633122 | 8.3:+32332488 | None:intergenic |
AAATTGAATAAAGGTCAGGT+GGG | 0.634827 | 8.3:+32330294 | None:intergenic |
AAGGTCGAGTTCCTCAAGGT+AGG | 0.637352 | 8.3:+32332549 | None:intergenic |
GATTCAGATATTCAATGATG+GGG | 0.640844 | 8.3:+32331334 | None:intergenic |
GTGCAACTTACACAATGTCG+TGG | 0.650583 | 8.3:-32331145 | MS.gene83731:CDS |
GCCAAGAAGATTGTGTAAAG+GGG | 0.659686 | 8.3:+32331080 | None:intergenic |
AACCCACGCCTCAACCGAGT+AGG | 0.676037 | 8.3:+32332588 | None:intergenic |
TCACAGAACCAAACGATTGG+GGG | 0.678392 | 8.3:+32331103 | None:intergenic |
CTCAAGGTAGGGTCCAATGG+CGG | 0.686389 | 8.3:+32332561 | None:intergenic |
TTTAAGTTGACACATTCCTG+AGG | 0.695966 | 8.3:+32330120 | None:intergenic |
AGAGAATTGAAGTTAAACCA+CGG | 0.702506 | 8.3:+32330776 | None:intergenic |
TGACGGCAAACTAACCACTG+TGG | 0.757376 | 8.3:+32331425 | None:intergenic |
AAACATCCAACCCTCCACAG+TGG | 0.777874 | 8.3:-32331439 | MS.gene83731:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTATATTT+TGG | + | chr8.3:32331200-32331219 | None:intergenic | 0.0% |
!! | AAAATAAAAAAATTTAACCT+TGG | + | chr8.3:32331734-32331753 | None:intergenic | 10.0% |
!! | AAATTCTTTAAATTGAATAA+AGG | + | chr8.3:32332463-32332482 | None:intergenic | 10.0% |
!! | TCTTACTAAAATAAATTATT+GGG | - | chr8.3:32330626-32330645 | MS.gene83731:intron | 10.0% |
!! | TTCTTACTAAAATAAATTAT+TGG | - | chr8.3:32330625-32330644 | MS.gene83731:intron | 10.0% |
!! | TTTATAGATTCAAATTAATT+AGG | + | chr8.3:32330909-32330928 | None:intergenic | 10.0% |
!!! | AATAATTTATTTTAGTAAGA+AGG | + | chr8.3:32330626-32330645 | None:intergenic | 10.0% |
!!! | ATAATTTATTTTAGTAAGAA+GGG | + | chr8.3:32330625-32330644 | None:intergenic | 10.0% |
!! | AAATTATATAGACCAAATTA+AGG | + | chr8.3:32332068-32332087 | None:intergenic | 15.0% |
!! | ATCTATAAAAAACTAAAACA+TGG | - | chr8.3:32330920-32330939 | MS.gene83731:intron | 15.0% |
!! | ATTCAATTTAAAGAATTTCA+AGG | - | chr8.3:32332465-32332484 | MS.gene83731:intron | 15.0% |
!! | GTAATCTATTTCATAAAAAT+TGG | + | chr8.3:32332105-32332124 | None:intergenic | 15.0% |
!!! | GAAATTTTTGTTTTTGTTTT+TGG | - | chr8.3:32330809-32330828 | MS.gene83731:CDS | 15.0% |
!!! | TAATCTTGTTATATATTAAG+TGG | + | chr8.3:32332169-32332188 | None:intergenic | 15.0% |
!! | TCAATGTAAACAAATATTCA+GGG | + | chr8.3:32331054-32331073 | None:intergenic | 20.0% |
!! | TTCAATGTAAACAAATATTC+AGG | + | chr8.3:32331055-32331074 | None:intergenic | 20.0% |
!! | TTTCTCTTTATATATAAGTC+CGG | - | chr8.3:32330322-32330341 | MS.gene83731:CDS | 20.0% |
!!! | TATTTTAGTTCTTTCAATGT+TGG | - | chr8.3:32330413-32330432 | MS.gene83731:intron | 20.0% |
!!! | TGTGTTTTTGTTTATAGTAA+CGG | - | chr8.3:32330350-32330369 | MS.gene83731:CDS | 20.0% |
! | AAAGCAATGTTGAATATATG+AGG | + | chr8.3:32330599-32330618 | None:intergenic | 25.0% |
! | AAGATTCAGATATTCAATGA+TGG | + | chr8.3:32331416-32331435 | None:intergenic | 25.0% |
! | AATTATTAGAACTTGAAGCA+TGG | + | chr8.3:32332018-32332037 | None:intergenic | 25.0% |
! | ACAATTGGATTTGGATTTAA+CGG | + | chr8.3:32331021-32331040 | None:intergenic | 25.0% |
! | AGATTCAGATATTCAATGAT+GGG | + | chr8.3:32331415-32331434 | None:intergenic | 25.0% |
! | ATTATTAGAACTTGAAGCAT+GGG | + | chr8.3:32332017-32332036 | None:intergenic | 25.0% |
! | ATTATTGTTTGTATCGTGTT+TGG | - | chr8.3:32330734-32330753 | MS.gene83731:CDS | 25.0% |
! | ATTCTTGAAAAAGTAGATCA+TGG | + | chr8.3:32331917-32331936 | None:intergenic | 25.0% |
! | CATATATTCAACATTGCTTT+AGG | - | chr8.3:32330599-32330618 | MS.gene83731:intron | 25.0% |
! | CTTTAAATTGAATAAAGGTC+AGG | + | chr8.3:32332458-32332477 | None:intergenic | 25.0% |
! | GATTATTACTGATAGTTCAT+TGG | - | chr8.3:32332551-32332570 | MS.gene83731:CDS | 25.0% |
! | TATATAGACCAAATTAAGGT+TGG | + | chr8.3:32332064-32332083 | None:intergenic | 25.0% |
! | TCTAATAATTCAGTATGACA+AGG | - | chr8.3:32332028-32332047 | MS.gene83731:intron | 25.0% |
! | TTCTTGAAAAAGTAGATCAT+GGG | + | chr8.3:32331916-32331935 | None:intergenic | 25.0% |
!!! | GATTTTAGTTCCTTCAATAT+GGG | - | chr8.3:32331103-32331122 | MS.gene83731:CDS | 25.0% |
!!! | TGATTTTAGTTCCTTCAATA+TGG | - | chr8.3:32331102-32331121 | MS.gene83731:CDS | 25.0% |
AAACAAATATTCAGGGACTA+TGG | + | chr8.3:32331047-32331066 | None:intergenic | 30.0% | |
AAATTGAATAAAGGTCAGGT+GGG | + | chr8.3:32332454-32332473 | None:intergenic | 30.0% | |
AATTGGATTTGGATTTAACG+GGG | + | chr8.3:32331019-32331038 | None:intergenic | 30.0% | |
AGAGAATTGAAGTTAAACCA+CGG | + | chr8.3:32331972-32331991 | None:intergenic | 30.0% | |
ATCAATGACGATGATGAAAT+TGG | - | chr8.3:32331499-32331518 | MS.gene83731:intron | 30.0% | |
CAATTGGATTTGGATTTAAC+GGG | + | chr8.3:32331020-32331039 | None:intergenic | 30.0% | |
CTAATCAACCAATGTAATGT+AGG | + | chr8.3:32330513-32330532 | None:intergenic | 30.0% | |
GATTCAGATATTCAATGATG+GGG | + | chr8.3:32331414-32331433 | None:intergenic | 30.0% | |
TAAATTGAATAAAGGTCAGG+TGG | + | chr8.3:32332455-32332474 | None:intergenic | 30.0% | |
TCAATGACGATGATGAAATT+GGG | - | chr8.3:32331500-32331519 | MS.gene83731:intron | 30.0% | |
TCCACATTAACAAATTTCAG+AGG | - | chr8.3:32331157-32331176 | MS.gene83731:CDS | 30.0% | |
TCTTGAAAAAGTAGATCATG+GGG | + | chr8.3:32331915-32331934 | None:intergenic | 30.0% | |
TCTTTATATATAAGTCCGGA+GGG | - | chr8.3:32330326-32330345 | MS.gene83731:CDS | 30.0% | |
TGTTTAGTCCAACCTTAATT+TGG | - | chr8.3:32332053-32332072 | MS.gene83731:intron | 30.0% | |
! | AACGGCAATTTTATGAGATT+TGG | - | chr8.3:32330368-32330387 | MS.gene83731:intron | 30.0% |
! | CTACATTACATTGGTTGATT+AGG | - | chr8.3:32330511-32330530 | MS.gene83731:intron | 30.0% |
!! | TCCTCTGAAATTTGTTAATG+TGG | + | chr8.3:32331161-32331180 | None:intergenic | 30.0% |
!! | TTTGGTTTATGCACTTTTGT+GGG | - | chr8.3:32330827-32330846 | MS.gene83731:CDS | 30.0% |
!!! | TCTGAATCTTTGTTTTTCTC+CGG | - | chr8.3:32331426-32331445 | MS.gene83731:CDS | 30.0% |
!!! | TTTTGGTTTATGCACTTTTG+TGG | - | chr8.3:32330826-32330845 | MS.gene83731:CDS | 30.0% |
AAACATTATCTGATGTGCCA+AGG | - | chr8.3:32332601-32332620 | MS.gene83731:CDS | 35.0% | |
AACATTACCCAAATCACGTT+TGG | - | chr8.3:32331562-32331581 | MS.gene83731:intron | 35.0% | |
AACATTATCTGATGTGCCAA+GGG | - | chr8.3:32332602-32332621 | MS.gene83731:CDS | 35.0% | |
AATTTAACCTTGGTTGTCGA+AGG | + | chr8.3:32331724-32331743 | None:intergenic | 35.0% | |
ACTGTTTGTACACATCATCA+AGG | + | chr8.3:32331878-32331897 | None:intergenic | 35.0% | |
ATCGTATTATCTCGAGCTAA+CGG | - | chr8.3:32330957-32330976 | MS.gene83731:intron | 35.0% | |
ATTAGCAGCGTCTTTAATGA+CGG | + | chr8.3:32331340-32331359 | None:intergenic | 35.0% | |
ATTGGATTTGGATTTAACGG+GGG | + | chr8.3:32331018-32331037 | None:intergenic | 35.0% | |
ATTTCAAGGATTTCCAGATG+AGG | - | chr8.3:32332479-32332498 | MS.gene83731:CDS | 35.0% | |
CAATGACGATGATGAAATTG+GGG | - | chr8.3:32331501-32331520 | MS.gene83731:intron | 35.0% | |
CTCTTTATATATAAGTCCGG+AGG | - | chr8.3:32330325-32330344 | MS.gene83731:CDS | 35.0% | |
CTTAGTGTAACCCATATTGA+AGG | + | chr8.3:32331116-32331135 | None:intergenic | 35.0% | |
CTTTCTTCGTTAGATAAGTC+AGG | + | chr8.3:32330490-32330509 | None:intergenic | 35.0% | |
GAAGAAAGCCTACATTACAT+TGG | - | chr8.3:32330502-32330521 | MS.gene83731:intron | 35.0% | |
GATCAGGTGCATTTATTTCA+AGG | + | chr8.3:32331531-32331550 | None:intergenic | 35.0% | |
GCATCTTATTGCACAATGTA+CGG | - | chr8.3:32332139-32332158 | MS.gene83731:intron | 35.0% | |
TAAACAAAAACACAACCCTC+CGG | + | chr8.3:32330344-32330363 | None:intergenic | 35.0% | |
TGGTTATGTATAGTACCATG+AGG | - | chr8.3:32330433-32330452 | MS.gene83731:intron | 35.0% | |
TTGTTCAAATATGTCCCTCA+TGG | + | chr8.3:32330570-32330589 | None:intergenic | 35.0% | |
! | ACGTGATTTGGGTAATGTTA+AGG | + | chr8.3:32331561-32331580 | None:intergenic | 35.0% |
! | ATGTTAAGGTACTCAAGATC+AGG | + | chr8.3:32331547-32331566 | None:intergenic | 35.0% |
! | GATGATTTTCAGCCTTCTTA+CGG | + | chr8.3:32331482-32331501 | None:intergenic | 35.0% |
! | GCTAATCAACATTGGTTATG+TGG | - | chr8.3:32331354-32331373 | MS.gene83731:CDS | 35.0% |
!! | GATTTGGATTTGTTGCTGTT+AGG | - | chr8.3:32330384-32330403 | MS.gene83731:intron | 35.0% |
!! | TTGATGATGTGTACAAACAG+TGG | - | chr8.3:32331877-32331896 | MS.gene83731:intron | 35.0% |
!! | TTTAAGTTGACACATTCCTG+AGG | + | chr8.3:32332628-32332647 | None:intergenic | 35.0% |
!!! | GTTGAGCTTGTTTTGCAAAA+AGG | - | chr8.3:32332510-32332529 | MS.gene83731:CDS | 35.0% |
AACAGTCACCAATCTTAGGA+TGG | - | chr8.3:32332394-32332413 | MS.gene83731:intron | 40.0% | |
AAGACGCTGCTAATCAACAT+TGG | - | chr8.3:32331346-32331365 | MS.gene83731:CDS | 40.0% | |
AAGCAATGAAGCACAAACAC+AGG | + | chr8.3:32330762-32330781 | None:intergenic | 40.0% | |
AATCAGCAGCATAGAGAGTA+AGG | + | chr8.3:32330218-32330237 | None:intergenic | 40.0% | |
ACAAGACAATTAGGCACACT+AGG | + | chr8.3:32332429-32332448 | None:intergenic | 40.0% | |
ACAGTCACCAATCTTAGGAT+GGG | - | chr8.3:32332395-32332414 | MS.gene83731:intron | 40.0% | |
ACCATAAAGACATAGGCGTT+AGG | - | chr8.3:32330461-32330480 | MS.gene83731:intron | 40.0% | |
ACCCCTTTACACAATCTTCT+TGG | - | chr8.3:32331664-32331683 | MS.gene83731:intron | 40.0% | |
ACTGTTCCTGAAAGCAACAA+AGG | + | chr8.3:32332380-32332399 | None:intergenic | 40.0% | |
AGGTGGGATACAAGACAATT+AGG | + | chr8.3:32332438-32332457 | None:intergenic | 40.0% | |
CAAACTTTGTCCAAGCTTTC+CGG | + | chr8.3:32331448-32331467 | None:intergenic | 40.0% | |
CAATTTCACCATAGAGACTG+AGG | + | chr8.3:32331282-32331301 | None:intergenic | 40.0% | |
CCATAAAGACATAGGCGTTA+GGG | - | chr8.3:32330462-32330481 | MS.gene83731:intron | 40.0% | |
CGCCAAGAAGATTGTGTAAA+GGG | + | chr8.3:32331669-32331688 | None:intergenic | 40.0% | |
CTATGGCACACAATTGGATT+TGG | + | chr8.3:32331030-32331049 | None:intergenic | 40.0% | |
GAATGTCGTGCTTCTTCTTT+AGG | + | chr8.3:32332578-32332597 | None:intergenic | 40.0% | |
GCCAAGAAGATTGTGTAAAG+GGG | + | chr8.3:32331668-32331687 | None:intergenic | 40.0% | |
TATGTATAGTACCATGAGGC+CGG | - | chr8.3:32330437-32330456 | MS.gene83731:intron | 40.0% | |
TCAAATATGTCCCTCATGGT+CGG | + | chr8.3:32330566-32330585 | None:intergenic | 40.0% | |
TCAACAAATGACACCTCATC+TGG | + | chr8.3:32332495-32332514 | None:intergenic | 40.0% | |
TCCAATGCAATCACATGTGT+CGG | + | chr8.3:32330697-32330716 | None:intergenic | 40.0% | |
TCTTTGTTCCTCAGTCTCTA+TGG | - | chr8.3:32331271-32331290 | MS.gene83731:CDS | 40.0% | |
TGGAAGTGAATAGTGTTCGA+GGG | + | chr8.3:32330263-32330282 | None:intergenic | 40.0% | |
! | ATTTTCAGCCTTCTTACGGA+AGG | + | chr8.3:32331478-32331497 | None:intergenic | 40.0% |
! | CTCTATGCTGCTGATTATTC+TGG | - | chr8.3:32330222-32330241 | MS.gene83731:CDS | 40.0% |
!! | TCAAGTCCTTTGTTGCTTTC+AGG | - | chr8.3:32332371-32332390 | MS.gene83731:intron | 40.0% |
!! | TTGTTTTTCTCCGGAAAGCT+TGG | - | chr8.3:32331435-32331454 | MS.gene83731:CDS | 40.0% |
AAGCTTGGCCAAACGTGATT+TGG | + | chr8.3:32331573-32331592 | None:intergenic | 45.0% | |
AAGTGAATAGTGTTCGAGGG+AGG | + | chr8.3:32330260-32330279 | None:intergenic | 45.0% | |
ACAATTAGGCACACTAGGCA+GGG | + | chr8.3:32332424-32332443 | None:intergenic | 45.0% | |
ACCGACACATGTGATTGCAT+TGG | - | chr8.3:32330693-32330712 | MS.gene83731:intron | 45.0% | |
AGCTTGGCCAAACGTGATTT+GGG | + | chr8.3:32331572-32331591 | None:intergenic | 45.0% | |
AGTTGCACATGCTGAAAGCT+TGG | + | chr8.3:32331588-32331607 | None:intergenic | 45.0% | |
CAGGAACAGTCACCAATCTT+AGG | - | chr8.3:32332390-32332409 | MS.gene83731:intron | 45.0% | |
CCCTAACGCCTATGTCTTTA+TGG | + | chr8.3:32330465-32330484 | None:intergenic | 45.0% | |
CGCCTATGTCTTTATGGTAC+CGG | + | chr8.3:32330459-32330478 | None:intergenic | 45.0% | |
GCGCCAAGAAGATTGTGTAA+AGG | + | chr8.3:32331670-32331689 | None:intergenic | 45.0% | |
GGTCACAGAACCAAACGATT+GGG | + | chr8.3:32331647-32331666 | None:intergenic | 45.0% | |
GTCACAGAACCAAACGATTG+GGG | + | chr8.3:32331646-32331665 | None:intergenic | 45.0% | |
GTGCAACTTACACAATGTCG+TGG | - | chr8.3:32331600-32331619 | MS.gene83731:intron | 45.0% | |
GTGGAAGTGAATAGTGTTCG+AGG | + | chr8.3:32330264-32330283 | None:intergenic | 45.0% | |
GTTCGAGGGAGGTTGAAATT+GGG | + | chr8.3:32330249-32330268 | None:intergenic | 45.0% | |
GTTGAAACCTTCGACAACCA+AGG | - | chr8.3:32331714-32331733 | MS.gene83731:intron | 45.0% | |
TCACAGAACCAAACGATTGG+GGG | + | chr8.3:32331645-32331664 | None:intergenic | 45.0% | |
TCATGCAGTCAGCATGTCAT+TGG | + | chr8.3:32330986-32331005 | None:intergenic | 45.0% | |
TGCGTGAATGCACTTCTTTG+TGG | - | chr8.3:32331385-32331404 | MS.gene83731:CDS | 45.0% | |
TGTTCGAGGGAGGTTGAAAT+TGG | + | chr8.3:32330250-32330269 | None:intergenic | 45.0% | |
TTAGGATGTCATCCCACCTA+TGG | - | chr8.3:32330529-32330548 | MS.gene83731:intron | 45.0% | |
TTATCCACACAGTCTGCAGT+AGG | - | chr8.3:32330880-32330899 | MS.gene83731:intron | 45.0% | |
!! | CATGGGACATTTCTGAAGCA+AGG | + | chr8.3:32332000-32332019 | None:intergenic | 45.0% |
!! | TCTCTCTGGGACTAAACATC+TGG | - | chr8.3:32331690-32331709 | MS.gene83731:intron | 45.0% |
!!! | CAATATTATTTTTTTTTAAA+AGG | + | chr8.3:32332343-32332362 | None:intergenic | 5.0% |
!!! | TATTTCATAAAATTTTTAAA+AGG | + | chr8.3:32332221-32332240 | None:intergenic | 5.0% |
AAACATCCAACCCTCCACAG+TGG | - | chr8.3:32331306-32331325 | MS.gene83731:CDS | 50.0% | |
AACTAACCACTGTGGAGGGT+TGG | + | chr8.3:32331315-32331334 | None:intergenic | 50.0% | |
AAGGTCGAGTTCCTCAAGGT+AGG | + | chr8.3:32330199-32330218 | None:intergenic | 50.0% | |
AATCTTCTTGGCGCTCTCTC+TGG | - | chr8.3:32331676-32331695 | MS.gene83731:intron | 50.0% | |
ACCACGGAAGATTGAGCTCT+AGG | + | chr8.3:32331956-32331975 | None:intergenic | 50.0% | |
AGGGTAGCCCATCCTAAGAT+TGG | + | chr8.3:32332405-32332424 | None:intergenic | 50.0% | |
AGGTCGAGTTCCTCAAGGTA+GGG | + | chr8.3:32330198-32330217 | None:intergenic | 50.0% | |
ATCAGCAAGTGTGGGTTCTC+AGG | + | chr8.3:32330657-32330676 | None:intergenic | 50.0% | |
ATCTTCTTGGCGCTCTCTCT+GGG | - | chr8.3:32331677-32331696 | MS.gene83731:intron | 50.0% | |
CAGGGACTATGGCACACAAT+TGG | + | chr8.3:32331036-32331055 | None:intergenic | 50.0% | |
CCACTAATCTCGTTTCGCTC+AGG | - | chr8.3:32330280-32330299 | MS.gene83731:CDS | 50.0% | |
CCTGAGCGAAACGAGATTAG+TGG | + | chr8.3:32330283-32330302 | None:intergenic | 50.0% | |
CTGCAGACTGTGTGGATAAG+TGG | + | chr8.3:32330879-32330898 | None:intergenic | 50.0% | |
GACAATTAGGCACACTAGGC+AGG | + | chr8.3:32332425-32332444 | None:intergenic | 50.0% | |
GAGTAAGGTCGAGTTCCTCA+AGG | + | chr8.3:32330203-32330222 | None:intergenic | 50.0% | |
GATGTCTTCCCCCAATCGTT+TGG | - | chr8.3:32331634-32331653 | MS.gene83731:intron | 50.0% | |
GGCAAACTAACCACTGTGGA+GGG | + | chr8.3:32331319-32331338 | None:intergenic | 50.0% | |
GGCCGGTACCATAAAGACAT+AGG | - | chr8.3:32330454-32330473 | MS.gene83731:intron | 50.0% | |
GGGTCACAGAACCAAACGAT+TGG | + | chr8.3:32331648-32331667 | None:intergenic | 50.0% | |
GTGTACAAACAGTGGCTGCT+TGG | - | chr8.3:32331885-32331904 | MS.gene83731:intron | 50.0% | |
TCAGCAAGTGTGGGTTCTCA+GGG | + | chr8.3:32330656-32330675 | None:intergenic | 50.0% | |
TCAGCCTTCTTACGGAAGGT+GGG | + | chr8.3:32331474-32331493 | None:intergenic | 50.0% | |
TCATCCCACCTATGGTGCAT+AGG | - | chr8.3:32330537-32330556 | MS.gene83731:intron | 50.0% | |
TGACGGCAAACTAACCACTG+TGG | + | chr8.3:32331323-32331342 | None:intergenic | 50.0% | |
TGATAAGAGCCGTGCCTACT+CGG | - | chr8.3:32330143-32330162 | MS.gene83731:CDS | 50.0% | |
TTCAGCCTTCTTACGGAAGG+TGG | + | chr8.3:32331475-32331494 | None:intergenic | 50.0% | |
TTCCTCAAGGTAGGGTCCAA+TGG | + | chr8.3:32330190-32330209 | None:intergenic | 50.0% | |
! | AACCCACACTTGCTGATCGT+AGG | - | chr8.3:32330660-32330679 | MS.gene83731:intron | 50.0% |
!! | TCTTTATGGTACCGGCCTCA+TGG | + | chr8.3:32330451-32330470 | None:intergenic | 50.0% |
ACGCCTACGATCAGCAAGTG+TGG | + | chr8.3:32330666-32330685 | None:intergenic | 55.0% | |
CGCCTACGATCAGCAAGTGT+GGG | + | chr8.3:32330665-32330684 | None:intergenic | 55.0% | |
CGGCAAACTAACCACTGTGG+AGG | + | chr8.3:32331320-32331339 | None:intergenic | 55.0% | |
CTCAAGGTAGGGTCCAATGG+CGG | + | chr8.3:32330187-32330206 | None:intergenic | 55.0% | |
GCCTAGAGCTCAATCTTCCG+TGG | - | chr8.3:32331952-32331971 | MS.gene83731:intron | 55.0% | |
GTCGCCTATGCACCATAGGT+GGG | + | chr8.3:32330544-32330563 | None:intergenic | 55.0% | |
GTGTCCCACCTTCCGTAAGA+AGG | - | chr8.3:32331467-32331486 | MS.gene83731:intron | 55.0% | |
TGACACATTCCTGAGGCCCT+TGG | + | chr8.3:32332621-32332640 | None:intergenic | 55.0% | |
AACCCACGCCTCAACCGAGT+AGG | + | chr8.3:32330160-32330179 | None:intergenic | 60.0% | |
ACGCCTCAACCGAGTAGGCA+CGG | + | chr8.3:32330155-32330174 | None:intergenic | 60.0% | |
CAAGTGTGGGTTCTCAGGGC+TGG | + | chr8.3:32330652-32330671 | None:intergenic | 60.0% | |
CGCCATTGGACCCTACCTTG+AGG | - | chr8.3:32330185-32330204 | MS.gene83731:CDS | 60.0% | |
GACGCCTACTGCAGACTGTG+TGG | + | chr8.3:32330887-32330906 | None:intergenic | 60.0% | |
GCATAGGCGACCGACCATGA+GGG | - | chr8.3:32330553-32330572 | MS.gene83731:intron | 60.0% | |
GGTCGCCTATGCACCATAGG+TGG | + | chr8.3:32330545-32330564 | None:intergenic | 60.0% | |
GTCGGTCGCCTATGCACCAT+AGG | + | chr8.3:32330548-32330567 | None:intergenic | 60.0% | |
TCTGATGTGCCAAGGGCCTC+AGG | - | chr8.3:32332609-32332628 | MS.gene83731:CDS | 60.0% | |
TGCATAGGCGACCGACCATG+AGG | - | chr8.3:32330552-32330571 | MS.gene83731:intron | 60.0% | |
TGCCTACTCGGTTGAGGCGT+GGG | - | chr8.3:32330155-32330174 | MS.gene83731:CDS | 60.0% | |
GAGCCGTGCCTACTCGGTTG+AGG | - | chr8.3:32330149-32330168 | MS.gene83731:CDS | 65.0% | |
GTGCCTACTCGGTTGAGGCG+TGG | - | chr8.3:32330154-32330173 | MS.gene83731:CDS | 65.0% | |
GCGTGGGTTCGTGCCGCCAT+TGG | - | chr8.3:32330171-32330190 | MS.gene83731:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 32330111 | 32332656 | 32330111 | ID=MS.gene83731 |
chr8.3 | mRNA | 32330111 | 32332656 | 32330111 | ID=MS.gene83731.t1;Parent=MS.gene83731 |
chr8.3 | exon | 32332466 | 32332656 | 32332466 | ID=MS.gene83731.t1.exon1;Parent=MS.gene83731.t1 |
chr8.3 | CDS | 32332466 | 32332656 | 32332466 | ID=cds.MS.gene83731.t1;Parent=MS.gene83731.t1 |
chr8.3 | exon | 32331032 | 32331482 | 32331032 | ID=MS.gene83731.t1.exon2;Parent=MS.gene83731.t1 |
chr8.3 | CDS | 32331032 | 32331482 | 32331032 | ID=cds.MS.gene83731.t1;Parent=MS.gene83731.t1 |
chr8.3 | exon | 32330718 | 32330870 | 32330718 | ID=MS.gene83731.t1.exon3;Parent=MS.gene83731.t1 |
chr8.3 | CDS | 32330718 | 32330870 | 32330718 | ID=cds.MS.gene83731.t1;Parent=MS.gene83731.t1 |
chr8.3 | exon | 32330111 | 32330374 | 32330111 | ID=MS.gene83731.t1.exon4;Parent=MS.gene83731.t1 |
chr8.3 | CDS | 32330111 | 32330374 | 32330111 | ID=cds.MS.gene83731.t1;Parent=MS.gene83731.t1 |
Gene Sequence |
Protein sequence |