AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420990 MtrunA17_Chr7g0214171 100.000 106 0 0 1 106 1 106 5.29e-77 222
Msa1420990 MtrunA17_Chr5g0427821 86.792 106 14 0 1 106 7 112 8.65e-68 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420990 AT4G24440.2 90.566 106 10 0 1 106 1 106 6.66e-71 207
Msa1420990 AT4G24440.1 90.566 106 10 0 1 106 1 106 6.66e-71 207

Find 41 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTGAGATTGCGATTC+AGG 0.222867 tig0024902:-18874 Msa1420990:CDS
TTAATCTTGGCGATCGATTT+AGG 0.231845 tig0024902:-19363 Msa1420990:intron
TTTCTCTGGGCAAACATCTA+TGG 0.280270 tig0024902:-15623 Msa1420990:three_prime_UTR
TATGTTATTATAGATTTAAA+AGG 0.331823 tig0024902:-15813 Msa1420990:three_prime_UTR
CTCTCTCGATTAGTTAATCT+TGG 0.355497 tig0024902:-19376 Msa1420990:five_prime_UTR
ATGTGGCCTTCAGTTCTTGC+AGG 0.384806 tig0024902:-15851 Msa1420990:three_prime_UTR
TAGTCATCGTTATAAATGTA+TGG 0.419101 tig0024902:-15591 Msa1420990:three_prime_UTR
TCGTTATAAATGTATGGTTA+TGG 0.429200 tig0024902:-15585 Msa1420990:three_prime_UTR
AATGTGCCTCACTGAGACTT+TGG 0.433161 tig0024902:-18922 Msa1420990:CDS
TGAGAATATCACTTGGGAAC+TGG 0.438530 tig0024902:-15749 Msa1420990:three_prime_UTR
AATAATAACATGAAGATTGA+AGG 0.444739 tig0024902:+15790 None:intergenic
GTAGTCTATGACTGAAGCTC+TGG 0.460011 tig0024902:-18735 Msa1420990:intron
GGTTCTCGTTCAGTTTGATA+AGG 0.472558 tig0024902:-18853 Msa1420990:intron
GAAGGCCACATCCGTCACTA+TGG 0.482621 tig0024902:+15863 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.489651 tig0024902:+16034 None:intergenic
CTTATCATCTGCTGGTACCA+TGG 0.489942 tig0024902:-15899 Msa1420990:three_prime_UTR
TAACCCGTCCAACATTCTCT+TGG 0.494051 tig0024902:+15994 None:intergenic
CACTGAGACTTTGGACGAGA+TGG 0.495885 tig0024902:-18913 Msa1420990:CDS
AGAACCTGAATCGCAATCTC+AGG 0.497392 tig0024902:+18870 None:intergenic
ATTTGTTTACATAGAGCTCA+TGG 0.502581 tig0024902:+15651 None:intergenic
TAAAAGCAAGGTCTCTATCA+AGG 0.505886 tig0024902:-18702 Msa1420990:intron
ACAAGGAGCTTATCATCTGC+TGG 0.531966 tig0024902:-15907 Msa1420990:three_prime_UTR
TGTTGGACGGGTTAAAATAG+TGG 0.534469 tig0024902:-15985 Msa1420990:CDS
CTGGTTCCTGCAAGAACTGA+AGG 0.534775 tig0024902:+15845 None:intergenic
CATCTGCTGGTACCATGGAT+TGG 0.547292 tig0024902:-15894 Msa1420990:three_prime_UTR
CTGCTGGTACCATGGATTGG+TGG 0.547361 tig0024902:-15891 Msa1420990:three_prime_UTR
CTTTATCGTAGGTCGACAAT+CGG 0.550857 tig0024902:-18945 Msa1420990:CDS
GAAGACAACCAAGAGAATGT+TGG 0.561206 tig0024902:-16002 Msa1420990:CDS
TAATAACATAGTGTAGATGC+TGG 0.566171 tig0024902:+15826 None:intergenic
TTGGACGAGATGGTTCAGAA+TGG 0.589806 tig0024902:-18903 Msa1420990:CDS
CAACCAAGAGAATGTTGGAC+GGG 0.592439 tig0024902:-15997 Msa1420990:CDS
TTAGACCATAGTGACGGATG+TGG 0.610434 tig0024902:-15868 Msa1420990:three_prime_UTR
ATGGTCTAACCACCAATCCA+TGG 0.610777 tig0024902:+15882 None:intergenic
GGAAACACAAGTTAAAAGCA+AGG 0.611187 tig0024902:-18714 Msa1420990:CDS
TTTCTATCGTATTGTCAACA+AGG 0.636647 tig0024902:-15924 Msa1420990:three_prime_UTR
GTTACATTGAGAATATCACT+TGG 0.644377 tig0024902:-15756 Msa1420990:three_prime_UTR
ACAACCAAGAGAATGTTGGA+CGG 0.645466 tig0024902:-15998 Msa1420990:CDS
CGACGTTCGAACTTTATCGT+AGG 0.648273 tig0024902:-18956 Msa1420990:CDS
TTACATTGAGAATATCACTT+GGG 0.661466 tig0024902:-15755 Msa1420990:three_prime_UTR
TGGTGGTTAGACCATAGTGA+CGG 0.696323 tig0024902:-15874 Msa1420990:three_prime_UTR
TCTCGTCCAAAGTCTCAGTG+AGG 0.751939 tig0024902:+18916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTGAATAAATTCTT+TGG - tig0024902:17497-17516 Msa1420990:intron 10.0%
!! ATTTATTGAATAAATTCTTT+GGG - tig0024902:17498-17517 Msa1420990:intron 10.0%
!! TATGTTATTATAGATTTAAA+AGG - tig0024902:19224-19243 Msa1420990:intron 10.0%
!!! TACAGTTTTTTTTTTTTTTT+TGG + tig0024902:19351-19370 None:intergenic 10.0%
!! TTTGATGTGTAATTAAAATT+TGG + tig0024902:17021-17040 None:intergenic 15.0%
!! TTTATTGAATAAATTCTTTG+GGG - tig0024902:17499-17518 Msa1420990:intron 15.0%
!!! TACCTTTTTACTTAATTTTT+TGG - tig0024902:18108-18127 Msa1420990:intron 15.0%
!!! AAACATAAAAAGATGTTTTA+AGG + tig0024902:18811-18830 None:intergenic 15.0%
!!! TAAACAAATTTATTTTTCTC+TGG - tig0024902:19400-19419 Msa1420990:five_prime_UTR 15.0%
!!! AAACAAATTTATTTTTCTCT+GGG - tig0024902:19401-19420 Msa1420990:five_prime_UTR 15.0%
!! TTCAATTAACAAAAAGAGTA+GGG + tig0024902:15753-15772 None:intergenic 20.0%
!! ATTCAATTAACAAAAAGAGT+AGG + tig0024902:15754-15773 None:intergenic 20.0%
!!! CTTATTATTTTAATTGCATG+TGG - tig0024902:16274-16293 Msa1420990:intron 20.0%
!!! TTTTTACCTTTCAATTCAAT+GGG - tig0024902:16883-16902 Msa1420990:intron 20.0%
!!! TAAAATTTGGTTTAAGACAT+TGG + tig0024902:17008-17027 None:intergenic 20.0%
!! TTACATTTAGAAATTCCTTA+TGG - tig0024902:17869-17888 Msa1420990:intron 20.0%
!! TATTTGCATTATCTTCTATT+TGG - tig0024902:17931-17950 Msa1420990:intron 20.0%
!!! ATCATTCAAGGTTTAATTTT+TGG - tig0024902:17965-17984 Msa1420990:intron 20.0%
!! TTAAGTAAAAAGGTAATTGT+GGG + tig0024902:18103-18122 None:intergenic 20.0%
!! ATTAAGTAAAAAGGTAATTG+TGG + tig0024902:18104-18123 None:intergenic 20.0%
!! AGCCAAAAAATTAAGTAAAA+AGG + tig0024902:18113-18132 None:intergenic 20.0%
!! ATAATCATGAGTAAAAAGTA+TGG + tig0024902:18202-18221 None:intergenic 20.0%
!! TTAAAATTCTTCTACGTAAT+AGG - tig0024902:18469-18488 Msa1420990:intron 20.0%
!! TAAAATTCTTCTACGTAATA+GGG - tig0024902:18470-18489 Msa1420990:intron 20.0%
!! TAGTACAAAATGTTGTTAAA+TGG + tig0024902:18516-18535 None:intergenic 20.0%
!! AATAATAACATGAAGATTGA+AGG + tig0024902:19250-19269 None:intergenic 20.0%
!!! TCACATTTTTCAAGCTAAAA+TGG - tig0024902:16058-16077 Msa1420990:CDS 25.0%
!! ATCTTTTGTTAGATAGTGTA+AGG - tig0024902:16369-16388 Msa1420990:intron 25.0%
!! TTCATCTCATTAGTTTGAAT+TGG + tig0024902:16605-16624 None:intergenic 25.0%
!! CTTTTTACCTTTCAATTCAA+TGG - tig0024902:16882-16901 Msa1420990:intron 25.0%
!! TCTCATAGTTTGGAATAAAT+CGG + tig0024902:16917-16936 None:intergenic 25.0%
!! CACATCAAATAACAATTTTC+CGG - tig0024902:17032-17051 Msa1420990:intron 25.0%
!! ACATCAAATAACAATTTTCC+GGG - tig0024902:17033-17052 Msa1420990:intron 25.0%
!!! TTTTCAAGAGATTCTTAAAC+CGG + tig0024902:17137-17156 None:intergenic 25.0%
! ATGACATGTTTCAGTATAAA+GGG + tig0024902:17186-17205 None:intergenic 25.0%
! TGTTGAAAAACCAAATTTGA+TGG - tig0024902:17412-17431 Msa1420990:intron 25.0%
! CTATAATTCACCATCAAATT+TGG + tig0024902:17425-17444 None:intergenic 25.0%
! TAGAATTGTCTGATAAAAAC+TGG - tig0024902:17442-17461 Msa1420990:intron 25.0%
! ATTCAGTTACAAATCCTATT+TGG + tig0024902:17470-17489 None:intergenic 25.0%
! GTTTGTACTAGGAATAAATA+TGG + tig0024902:17694-17713 None:intergenic 25.0%
!! AGAAAAATTGAAACTGACTT+TGG + tig0024902:17800-17819 None:intergenic 25.0%
! TCATAAAGAAATACTATGCA+AGG + tig0024902:17824-17843 None:intergenic 25.0%
! GAGATTTAAAGAGATTGAAT+TGG - tig0024902:18066-18085 Msa1420990:intron 25.0%
! TTAAAGAGATTGAATTGGTA+TGG - tig0024902:18071-18090 Msa1420990:intron 25.0%
! ATAACAGTCATATATGTCAA+TGG + tig0024902:18230-18249 None:intergenic 25.0%
! GAAACTAAGTAAACTATTGT+TGG - tig0024902:18317-18336 Msa1420990:intron 25.0%
! TACAAAATGTTGTTAAATGG+AGG + tig0024902:18513-18532 None:intergenic 25.0%
!! ATAGAAGATTAATTTGACTG+TGG - tig0024902:18727-18746 Msa1420990:CDS 25.0%
!! TAGAAGATTAATTTGACTGT+GGG - tig0024902:18728-18747 Msa1420990:CDS 25.0%
!!! AAAAGATGTTTTAAGGTGTT+GGG + tig0024902:18804-18823 None:intergenic 25.0%
!!! AAAAAGATGTTTTAAGGTGT+TGG + tig0024902:18805-18824 None:intergenic 25.0%
! TTACATTGAGAATATCACTT+GGG - tig0024902:19282-19301 Msa1420990:intron 25.0%
! TAGTCATCGTTATAAATGTA+TGG - tig0024902:19446-19465 Msa1420990:five_prime_UTR 25.0%
! TCGTTATAAATGTATGGTTA+TGG - tig0024902:19452-19471 Msa1420990:five_prime_UTR 25.0%
! TCATTTTCATAGCTTCTTAC+CGG - tig0024902:15856-15875 Msa1420990:three_prime_UTR 30.0%
AATGAATACTGTAGTAGTAG+TGG - tig0024902:15887-15906 Msa1420990:three_prime_UTR 30.0%
CATTTCATGAGAAAACAAAG+AGG + tig0024902:15954-15973 None:intergenic 30.0%
!!! AGTGTAAGGTGTTGATTTTT+TGG - tig0024902:16383-16402 Msa1420990:intron 30.0%
TATTGTTAAGATTGTCTAGC+AGG - tig0024902:16422-16441 Msa1420990:intron 30.0%
ATTGTTAAGATTGTCTAGCA+GGG - tig0024902:16423-16442 Msa1420990:intron 30.0%
CATTGAGCAACAAATATACA+AGG + tig0024902:16495-16514 None:intergenic 30.0%
!! TACTGAGCCTTGTATATTTT+TGG - tig0024902:16517-16536 Msa1420990:intron 30.0%
GATTGAGCCAAAAATATACA+AGG + tig0024902:16527-16546 None:intergenic 30.0%
TAATGAGATGAAGTTTACCT+AGG - tig0024902:16613-16632 Msa1420990:intron 30.0%
AATGAGATGAAGTTTACCTA+GGG - tig0024902:16614-16633 Msa1420990:intron 30.0%
!! GTATCAGTTTTTCAATCCAA+TGG - tig0024902:16845-16864 Msa1420990:intron 30.0%
TTTATTCCAAACTATGAGAG+AGG - tig0024902:16918-16937 Msa1420990:intron 30.0%
TAAAATCAAAGTCGAGGATA+TGG + tig0024902:16978-16997 None:intergenic 30.0%
TGGAAGAACATGAAAAAATG+AGG + tig0024902:17066-17085 None:intergenic 30.0%
GAAAGTTTGTGAATGAGTTT+CGG + tig0024902:17097-17116 None:intergenic 30.0%
GGTTTAAGAATCTCTTGAAA+AGG - tig0024902:17136-17155 Msa1420990:intron 30.0%
GATGACATGTTTCAGTATAA+AGG + tig0024902:17187-17206 None:intergenic 30.0%
! AAATCTCTAAAGGCTGAAAT+AGG + tig0024902:17209-17228 None:intergenic 30.0%
CCAACTTTACAAATCTCTAA+AGG + tig0024902:17219-17238 None:intergenic 30.0%
! CCTTTAGAGATTTGTAAAGT+TGG - tig0024902:17216-17235 Msa1420990:intron 30.0%
! ACACAAAGGTATATTGTAGA+GGG + tig0024902:17245-17264 None:intergenic 30.0%
ATACAACTGTTAACACACAA+AGG + tig0024902:17259-17278 None:intergenic 30.0%
! GTGTTCTTTATTTATCAGCA+TGG + tig0024902:17297-17316 None:intergenic 30.0%
GATAAAAACTGGTACCAAAT+AGG - tig0024902:17453-17472 Msa1420990:intron 30.0%
ACACAGAACTAAAATTACAC+AGG - tig0024902:17558-17577 Msa1420990:intron 30.0%
GTTATTGTAGAATTATTGCG+TGG + tig0024902:17653-17672 None:intergenic 30.0%
! GCATATTTTCTGTTTGTACT+AGG + tig0024902:17705-17724 None:intergenic 30.0%
TGTGCAGTTAGTATCTATTA+TGG + tig0024902:17758-17777 None:intergenic 30.0%
GCATAGTATTTCTTTATGAG+AGG - tig0024902:17825-17844 Msa1420990:intron 30.0%
CATTTAGAAATTCCTTATGG+CGG - tig0024902:17872-17891 Msa1420990:intron 30.0%
ATTTAGAAATTCCTTATGGC+GGG - tig0024902:17873-17892 Msa1420990:intron 30.0%
!!! ATTTTTTGGCTCTAAACATG+AGG - tig0024902:18122-18141 Msa1420990:intron 30.0%
GGAAGTCATGACAAAAAAAA+TGG + tig0024902:18181-18200 None:intergenic 30.0%
!!! GTTTTTTCCATCTCTTTTTG+CGG - tig0024902:18285-18304 Msa1420990:intron 30.0%
!!! TTTTTTCCATCTCTTTTTGC+GGG - tig0024902:18286-18305 Msa1420990:intron 30.0%
TAAACTATTGTTGGATAGCA+AGG - tig0024902:18326-18345 Msa1420990:intron 30.0%
TTGTTAAATGGAGGATATAG+TGG + tig0024902:18504-18523 None:intergenic 30.0%
TTGTACTAAATAACGTATCG+TGG - tig0024902:18528-18547 Msa1420990:intron 30.0%
ACTATACCACTATAATGTAG+CGG + tig0024902:18577-18596 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG + tig0024902:18601-18620 None:intergenic 30.0%
! ACAGATTTTGTGACAATGTT+TGG - tig0024902:18979-18998 Msa1420990:exon 30.0%
TTTCTATCGTATTGTCAACA+AGG - tig0024902:19113-19132 Msa1420990:intron 30.0%
TAATAACATAGTGTAGATGC+TGG + tig0024902:19214-19233 None:intergenic 30.0%
GTTACATTGAGAATATCACT+TGG - tig0024902:19281-19300 Msa1420990:intron 30.0%
ATTTGTTTACATAGAGCTCA+TGG + tig0024902:19389-19408 None:intergenic 30.0%
! CTCTCTCGATTAGTTAATCT+TGG - tig0024902:15661-15680 Msa1420990:three_prime_UTR 35.0%
! TTAATCTTGGCGATCGATTT+AGG - tig0024902:15674-15693 Msa1420990:three_prime_UTR 35.0%
AAAATAATCGCGAAGAAGGA+AGG + tig0024902:15713-15732 None:intergenic 35.0%
CCAAAAAATAATCGCGAAGA+AGG + tig0024902:15717-15736 None:intergenic 35.0%
!!! CCTTCTTCGCGATTATTTTT+TGG - tig0024902:15714-15733 Msa1420990:three_prime_UTR 35.0%
! TGATTCTGCTACTTGAAACT+GGG - tig0024902:15815-15834 Msa1420990:three_prime_UTR 35.0%
CAGTATTCATTATATTCCGC+CGG + tig0024902:15878-15897 None:intergenic 35.0%
CAGTTTGATAAGGTAGGTTT+CGG - tig0024902:16194-16213 Msa1420990:intron 35.0%
GGAAACACAAGTTAAAAGCA+AGG - tig0024902:16323-16342 Msa1420990:intron 35.0%
TAAAAGCAAGGTCTCTATCA+AGG - tig0024902:16335-16354 Msa1420990:intron 35.0%
!!! AAGGTGTTGATTTTTTGGTG+AGG - tig0024902:16388-16407 Msa1420990:intron 35.0%
! TCTCATTAGTTTGAATTGGC+TGG + tig0024902:16601-16620 None:intergenic 35.0%
GTCGCATTTCAGTTTAAGTA+TGG - tig0024902:16636-16655 Msa1420990:intron 35.0%
TTACCTTTCAATTCAATGGG+TGG - tig0024902:16886-16905 Msa1420990:intron 35.0%
!! TCCTCGACTTTGATTTTACT+TGG - tig0024902:16980-16999 Msa1420990:intron 35.0%
TCCAAGTAAAATCAAAGTCG+AGG + tig0024902:16984-17003 None:intergenic 35.0%
AAAAAATGAGGAAGAGAACC+CGG + tig0024902:17054-17073 None:intergenic 35.0%
AAGAATCTCTTGAAAAGGTG+TGG - tig0024902:17141-17160 Msa1420990:intron 35.0%
! CACACAAAGGTATATTGTAG+AGG + tig0024902:17246-17265 None:intergenic 35.0%
TGTGTGTTAACAGTTGTATC+TGG - tig0024902:17260-17279 Msa1420990:intron 35.0%
ACAATTCAAGTCCACAAATC+AGG - tig0024902:17315-17334 Msa1420990:intron 35.0%
TCCACAAATCAGGATCAAAT+AGG - tig0024902:17325-17344 Msa1420990:intron 35.0%
CCACAAATCAGGATCAAATA+GGG - tig0024902:17326-17345 Msa1420990:intron 35.0%
AGAATTATTGCGTGGTTAAC+TGG + tig0024902:17645-17664 None:intergenic 35.0%
TAAAGATGCCTAACTTGAGA+GGG + tig0024902:17902-17921 None:intergenic 35.0%
TTAAAGATGCCTAACTTGAG+AGG + tig0024902:17903-17922 None:intergenic 35.0%
TAAACATGAGGTTCATTTGC+CGG - tig0024902:18134-18153 Msa1420990:intron 35.0%
ATGAGATCGTATAGTGCAAA+AGG + tig0024902:18265-18284 None:intergenic 35.0%
! ACTTTTACATGAACAAGCCA+TGG + tig0024902:18386-18405 None:intergenic 35.0%
AACGTATCGTGGAACAATAA+CGG - tig0024902:18539-18558 Msa1420990:intron 35.0%
CAAATTCCGCTACATTATAG+TGG - tig0024902:18568-18587 Msa1420990:intron 35.0%
GAACACTCAGAGTAAAGAAA+AGG + tig0024902:18917-18936 None:intergenic 35.0%
! TCTTTTCACTTTCCAATCAC+AGG - tig0024902:18941-18960 Msa1420990:CDS 35.0%
! CTTTTCACTTTCCAATCACA+GGG - tig0024902:18942-18961 Msa1420990:CDS 35.0%
! CAAAGCATCTTGTAAGATGA+AGG + tig0024902:19006-19025 None:intergenic 35.0%
! GTGATTCTGCTACTTGAAAC+TGG - tig0024902:15814-15833 Msa1420990:three_prime_UTR 40.0%
! TTTTCATAGCTTCTTACCGG+CGG - tig0024902:15859-15878 Msa1420990:three_prime_UTR 40.0%
TTAACAAGACTGACTGCACT+AGG + tig0024902:15993-16012 None:intergenic 40.0%
CTTTATCGTAGGTCGACAAT+CGG - tig0024902:16092-16111 Msa1420990:intron 40.0%
GGTTCTCGTTCAGTTTGATA+AGG - tig0024902:16184-16203 Msa1420990:intron 40.0%
CTCGTTCAGTTTGATAAGGT+AGG - tig0024902:16188-16207 Msa1420990:intron 40.0%
GATAAGGTAGGTTTCGGAAT+TGG - tig0024902:16200-16219 Msa1420990:intron 40.0%
GAGACTACATGTTTCGTTTC+TGG - tig0024902:16229-16248 Msa1420990:intron 40.0%
! ACATGTTTCGTTTCTGGATC+TGG - tig0024902:16235-16254 Msa1420990:intron 40.0%
!!! TTTTTTGGTGAGGTGAAGCA+TGG - tig0024902:16398-16417 Msa1420990:intron 40.0%
TTAAGATTGTCTAGCAGGGA+TGG - tig0024902:16427-16446 Msa1420990:intron 40.0%
TTAAACTGAAATGCGACCCT+AGG + tig0024902:16633-16652 None:intergenic 40.0%
CAACCACCCATTGAATTGAA+AGG + tig0024902:16892-16911 None:intergenic 40.0%
ACATCTCCTCTCTCATAGTT+TGG + tig0024902:16927-16946 None:intergenic 40.0%
AGTTTGTGAATGAGTTTCGG+AGG + tig0024902:17094-17113 None:intergenic 40.0%
! CCCTATTTGATCCTGATTTG+TGG + tig0024902:17329-17348 None:intergenic 40.0%
TTGTGAACTGTCTCTGACTT+GGG + tig0024902:17532-17551 None:intergenic 40.0%
ATTGTGAACTGTCTCTGACT+TGG + tig0024902:17533-17552 None:intergenic 40.0%
! GGATTAGTGAAACACAGTCA+CGG - tig0024902:17579-17598 Msa1420990:intron 40.0%
ATTGCGTGGTTAACTGGAAT+AGG + tig0024902:17639-17658 None:intergenic 40.0%
GAGAAGAAACGCATCATTCA+AGG - tig0024902:17953-17972 Msa1420990:intron 40.0%
AAACATGAGGTTCATTTGCC+GGG - tig0024902:18135-18154 Msa1420990:intron 40.0%
ATATGACCAAACTGCATACC+CGG + tig0024902:18156-18175 None:intergenic 40.0%
! TCTCATGATGATGACAACCA+TGG - tig0024902:18366-18385 Msa1420990:intron 40.0%
GAAGACAACCAAGAGAATGT+TGG - tig0024902:19035-19054 Msa1420990:intron 40.0%
ACAACCAAGAGAATGTTGGA+CGG - tig0024902:19039-19058 Msa1420990:intron 40.0%
!! TGTTGGACGGGTTAAAATAG+TGG - tig0024902:19052-19071 Msa1420990:intron 40.0%
TGAGAATATCACTTGGGAAC+TGG - tig0024902:19288-19307 Msa1420990:intron 40.0%
TTTCTCTGGGCAAACATCTA+TGG - tig0024902:19414-19433 Msa1420990:five_prime_UTR 40.0%
CGACGTTCGAACTTTATCGT+AGG - tig0024902:16081-16100 Msa1420990:intron 45.0%
AATGTGCCTCACTGAGACTT+TGG - tig0024902:16115-16134 Msa1420990:intron 45.0%
TTGGACGAGATGGTTCAGAA+TGG - tig0024902:16134-16153 Msa1420990:intron 45.0%
TAGTCCTGAGATTGCGATTC+AGG - tig0024902:16163-16182 Msa1420990:intron 45.0%
AGAACCTGAATCGCAATCTC+AGG + tig0024902:16170-16189 None:intergenic 45.0%
! TAGGTTTCGGAATTGGTGCT+AGG - tig0024902:16207-16226 Msa1420990:intron 45.0%
GTAGTCTATGACTGAAGCTC+TGG - tig0024902:16302-16321 Msa1420990:intron 45.0%
AATCAGAGAGACGAAGGGTT+TGG - tig0024902:16543-16562 Msa1420990:intron 45.0%
!! CAGACGTAACTTGTTACGAG+TGG - tig0024902:16724-16743 Msa1420990:intron 45.0%
AGCAAAAGTGACACAGCCAT+TGG + tig0024902:16864-16883 None:intergenic 45.0%
AATGAGTTTCGGAGGATGGA+TGG + tig0024902:17086-17105 None:intergenic 45.0%
TGTGAATGAGTTTCGGAGGA+TGG + tig0024902:17090-17109 None:intergenic 45.0%
TCTGATCACGCTCATTGTTC+CGG - tig0024902:17115-17134 Msa1420990:intron 45.0%
! CTCTTGAAAAGGTGTGGCAT+TGG - tig0024902:17147-17166 Msa1420990:intron 45.0%
!! AGAAAGCTCTAGAACCCTTG+TGG + tig0024902:17608-17627 None:intergenic 45.0%
AGCACGCCAACAACATGAAA+CGG + tig0024902:18757-18776 None:intergenic 45.0%
TATGCAGATGTCCCTGTGAT+TGG + tig0024902:18956-18975 None:intergenic 45.0%
CAACCAAGAGAATGTTGGAC+GGG - tig0024902:19040-19059 Msa1420990:intron 45.0%
TAACCCGTCCAACATTCTCT+TGG + tig0024902:19046-19065 None:intergenic 45.0%
ACAAGGAGCTTATCATCTGC+TGG - tig0024902:19130-19149 Msa1420990:intron 45.0%
CTTATCATCTGCTGGTACCA+TGG - tig0024902:19138-19157 Msa1420990:intron 45.0%
ATGGTCTAACCACCAATCCA+TGG + tig0024902:19158-19177 None:intergenic 45.0%
TGGTGGTTAGACCATAGTGA+CGG - tig0024902:19163-19182 Msa1420990:intron 45.0%
!! TTAGACCATAGTGACGGATG+TGG - tig0024902:19169-19188 Msa1420990:intron 45.0%
TCTCGTCCAAAGTCTCAGTG+AGG + tig0024902:16124-16143 None:intergenic 50.0%
CACTGAGACTTTGGACGAGA+TGG - tig0024902:16124-16143 Msa1420990:intron 50.0%
TGGCTCAATCAGAGAGACGA+AGG - tig0024902:16537-16556 Msa1420990:intron 50.0%
GGCTCAATCAGAGAGACGAA+GGG - tig0024902:16538-16557 Msa1420990:intron 50.0%
AGAGATACGCACACTGTGTG+TGG - tig0024902:16682-16701 Msa1420990:intron 50.0%
TGTGTGTGGACACTTGTGTG+AGG - tig0024902:16696-16715 Msa1420990:intron 50.0%
ACACAGTCACGGTTTCCACA+AGG - tig0024902:17590-17609 Msa1420990:intron 50.0%
CACAGTCACGGTTTCCACAA+GGG - tig0024902:17591-17610 Msa1420990:intron 50.0%
CATTTGCCGGGTATGCAGTT+TGG - tig0024902:18147-18166 Msa1420990:intron 50.0%
! TCCATCTCTTTTTGCGGGAG+TGG - tig0024902:18291-18310 Msa1420990:intron 50.0%
! CCATCTCTTTTTGCGGGAGT+GGG - tig0024902:18292-18311 Msa1420990:intron 50.0%
CATCTGCTGGTACCATGGAT+TGG - tig0024902:19143-19162 Msa1420990:intron 50.0%
ATGTGGCCTTCAGTTCTTGC+AGG - tig0024902:19186-19205 Msa1420990:intron 50.0%
CTGGTTCCTGCAAGAACTGA+AGG + tig0024902:19195-19214 None:intergenic 50.0%
AGAGAGACGAAGGGTTTGGC+TGG - tig0024902:16547-16566 Msa1420990:intron 55.0%
!! TGGTAAGTGAGAGCACCCTC+AGG - tig0024902:16567-16586 Msa1420990:intron 55.0%
!! TGAGAGGGTATCCCGCCATA+AGG + tig0024902:17887-17906 None:intergenic 55.0%
GCGGGATACCCTCTCAAGTT+AGG - tig0024902:17891-17910 Msa1420990:intron 55.0%
CCCACTCCCGCAAAAAGAGA+TGG + tig0024902:18295-18314 None:intergenic 55.0%
! GGGCTGCCGTTTCATGTTGT+TGG - tig0024902:18748-18767 Msa1420990:intron 55.0%
TTGGCGTGCTCAGTAGCTTG+TGG - tig0024902:18767-18786 Msa1420990:intron 55.0%
! TGGCGTGCTCAGTAGCTTGT+GGG - tig0024902:18768-18787 Msa1420990:intron 55.0%
!! CTGCTGGTACCATGGATTGG+TGG - tig0024902:19146-19165 Msa1420990:intron 55.0%
GAAGGCCACATCCGTCACTA+TGG + tig0024902:19177-19196 None:intergenic 55.0%
TGGCTGGCAGTGTGACCTGA+GGG + tig0024902:16585-16604 None:intergenic 60.0%
TTGGCTGGCAGTGTGACCTG+AGG + tig0024902:16586-16605 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024902 gene 15575 19484 15575 ID=Msa1420990;Name=Msa1420990
tig0024902 mRNA 15575 19484 15575 ID=Msa1420990-mRNA-1;Parent=Msa1420990;Name=Msa1420990-mRNA-1;_AED=0.23;_eAED=0.23;_QI=141|1|1|1|0.66|0.5|4|381|106
tig0024902 exon 15575 16096 15575 ID=Msa1420990-mRNA-1:exon:1863;Parent=Msa1420990-mRNA-1
tig0024902 exon 18703 18753 18703 ID=Msa1420990-mRNA-1:exon:1862;Parent=Msa1420990-mRNA-1
tig0024902 exon 18854 19002 18854 ID=Msa1420990-mRNA-1:exon:1861;Parent=Msa1420990-mRNA-1
tig0024902 exon 19364 19484 19364 ID=Msa1420990-mRNA-1:exon:1860;Parent=Msa1420990-mRNA-1
tig0024902 five_prime_UTR 19364 19484 19364 ID=Msa1420990-mRNA-1:five_prime_utr;Parent=Msa1420990-mRNA-1
tig0024902 five_prime_UTR 18983 19002 18983 ID=Msa1420990-mRNA-1:five_prime_utr;Parent=Msa1420990-mRNA-1
tig0024902 CDS 18854 18982 18854 ID=Msa1420990-mRNA-1:cds;Parent=Msa1420990-mRNA-1
tig0024902 CDS 18703 18753 18703 ID=Msa1420990-mRNA-1:cds;Parent=Msa1420990-mRNA-1
tig0024902 CDS 15956 16096 15956 ID=Msa1420990-mRNA-1:cds;Parent=Msa1420990-mRNA-1
tig0024902 three_prime_UTR 15575 15955 15575 ID=Msa1420990-mRNA-1:three_prime_utr;Parent=Msa1420990-mRNA-1
Gene Sequence

>Msa1420990

ATGGCGACGTTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAA

Protein sequence

>Msa1420990

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ*