AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591040 MtrunA17_Chr4g0011241 97.845 232 5 0 1 232 1 232 2.30e-169 465
Msa0591040 MtrunA17_Chr5g0398711 52.119 236 102 5 1 232 51 279 8.39e-77 233
Msa0591040 MtrunA17_Chr4g0056901 53.782 238 89 8 1 231 1 224 3.33e-73 222
Msa0591040 MtrunA17_Chr5g0398721 51.261 238 101 6 1 232 4 232 3.90e-72 219
Msa0591040 MtrunA17_Chr7g0275631 30.000 230 147 7 5 231 3 221 8.47e-23 92.4
Msa0591040 MtrunA17_Chr6g0476521 29.310 232 136 8 5 231 4 212 2.74e-22 91.3
Msa0591040 MtrunA17_Chr1g0188241 30.544 239 123 11 5 231 4 211 3.08e-21 88.2
Msa0591040 MtrunA17_Chr6g0476511 28.879 232 135 9 5 231 4 210 1.20e-20 86.7
Msa0591040 MtrunA17_Chr4g0011081 28.571 231 134 10 5 231 4 207 1.20e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591040 AT2G45360.1 54.545 231 88 4 1 231 1 214 6.99e-78 234
Msa0591040 AT3G60780.1 52.155 232 95 4 1 231 1 217 1.11e-74 226
Msa0591040 AT1G62840.1 44.958 238 111 6 1 232 1 224 2.30e-56 179
Msa0591040 AT1G12320.1 44.872 234 101 7 1 230 1 210 1.47e-46 154

Find 66 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGTTTCTTGGTTTAAA+TGG 0.134381 4_2:-15118886 Msa0591040:CDS
ATAACATTCTACGATGAATT+TGG 0.250717 4_2:+15119216 None:intergenic
TATACATCATGAAGCTTGTT+TGG 0.316497 4_2:-15119978 None:intergenic
GGCAAAGGTCAAATGTTTCT+TGG 0.321382 4_2:-15118895 Msa0591040:CDS
AGGCCAACACTTGCGGCTAT+TGG 0.324490 4_2:+15119181 None:intergenic
TTTGCCTGTTGGAAAGGGTT+TGG 0.337937 4_2:-15118819 Msa0591040:CDS
TGTAATCTTGACCCTTCATC+TGG 0.339388 4_2:+15119112 None:intergenic
TTGTGGTGGATTGTAGGCTT+AGG 0.346252 4_2:-15118988 Msa0591040:CDS
GAGTACTAGAGGGGCAGTTT+TGG 0.356533 4_2:-15118933 Msa0591040:CDS
TGTGGTGGATTGTAGGCTTA+GGG 0.385593 4_2:-15118987 Msa0591040:CDS
TGTGAGAAATTCAAGGAATC+TGG 0.400122 4_2:-15119280 Msa0591040:CDS
GGGATACACCCATCTCGGCT+AGG 0.414592 4_2:+15119077 None:intergenic
ACGGTGATCAAAAGTCTTGA+TGG 0.439976 4_2:-15119022 Msa0591040:CDS
ATTGCAGTGTGAGAAATTCA+AGG 0.454346 4_2:-15119287 Msa0591040:intron
AGTTCTCGGTGAAGCGCAAA+CGG 0.470434 4_2:-15119041 Msa0591040:CDS
GATGAATTTGGTGTTCCATC+CGG 0.471577 4_2:+15119228 None:intergenic
GGATACACCCATCTCGGCTA+GGG 0.478620 4_2:+15119078 None:intergenic
CACAAAAGCCCTAGCCGAGA+TGG 0.481827 4_2:-15119086 Msa0591040:CDS
ATATCCAAACCCTTTCCAAC+AGG 0.485251 4_2:+15118815 None:intergenic
AGCTTCAAGTAGTGCTTCAA+AGG 0.491703 4_2:-15118759 Msa0591040:CDS
TTGAGGTTGAAAGGTGCTTA+CGG 0.505934 4_2:+15119912 None:intergenic
ATTGATCTTACTTGTTGTTG+AGG 0.510185 4_2:+15119895 None:intergenic
GATCAAAAGTCTTGATGGGT+TGG 0.514141 4_2:-15119017 Msa0591040:CDS
CCGAGAACTATCTCCGGTGG+GGG 0.517771 4_2:+15119055 None:intergenic
GCGGTTGCTGCTCGCAACAC+CGG 0.525122 4_2:-15119157 Msa0591040:CDS
AGGCACACGTGTGGTTAGAT+CGG 0.531174 4_2:-15118846 Msa0591040:CDS
TGGAACATGGTTCTTGAAAG+AGG 0.534421 4_2:-15118866 Msa0591040:CDS
TGTTGCGAGCAGCAACCGCT+AGG 0.535059 4_2:+15119161 None:intergenic
CACCGAGAACTATCTCCGGT+GGG 0.537897 4_2:+15119053 None:intergenic
GATCTATGAGTTTGATCCAA+CGG 0.544545 4_2:+15118726 None:intergenic
GGTTTGGATATTGCTTACAT+AGG 0.545757 4_2:-15118803 Msa0591040:CDS
TACTTGTTGTTGAGGTTGAA+AGG 0.550183 4_2:+15119903 None:intergenic
ACAAAAGCCCTAGCCGAGAT+GGG 0.552505 4_2:-15119085 Msa0591040:CDS
GGTGTTCCATCCGGCTGCCA+TGG 0.552686 4_2:+15119237 None:intergenic
CGGTGATCAAAAGTCTTGAT+GGG 0.555108 4_2:-15119021 Msa0591040:CDS
CTTCTATCATCCATGGCAGC+CGG 0.557426 4_2:-15119247 Msa0591040:CDS
GCTTACATAGGAAGTAGAAT+CGG 0.562095 4_2:-15118791 Msa0591040:CDS
ATCGTAGAATGTTATTCCCA+CGG 0.567348 4_2:-15119208 Msa0591040:CDS
TATGCACACGTGTCTTGCAC+CGG 0.569145 4_2:+15119138 None:intergenic
GTGTGCATAGTCCCAGATGA+AGG 0.570105 4_2:-15119124 Msa0591040:CDS
CGAGAACTATCTCCGGTGGG+GGG 0.571171 4_2:+15119056 None:intergenic
TCACCGAGAACTATCTCCGG+TGG 0.572168 4_2:+15119052 None:intergenic
AACCGCTAGGCCAACACTTG+CGG 0.573043 4_2:+15119174 None:intergenic
TAGGGTTCTTAAGGTTGCAA+AGG 0.574007 4_2:-15118957 Msa0591040:CDS
GGTCCAATAGCCGCAAGTGT+TGG 0.576902 4_2:-15119184 Msa0591040:CDS
GTAATCTTGACCCTTCATCT+GGG 0.578141 4_2:+15119113 None:intergenic
AGCTGAGCTTCTATCATCCA+TGG 0.578564 4_2:-15119254 Msa0591040:CDS
TATCATCCATGGCAGCCGGA+TGG 0.579782 4_2:-15119243 Msa0591040:CDS
TGCGGCTATTGGACCGCCGT+GGG 0.584383 4_2:+15119192 None:intergenic
CAAAGGGTACTCCTAGCCGT+TGG 0.589404 4_2:-15118742 Msa0591040:CDS
GCTTCAAGTAGTGCTTCAAA+GGG 0.589534 4_2:-15118758 Msa0591040:CDS
ACCGAGAACTATCTCCGGTG+GGG 0.589901 4_2:+15119054 None:intergenic
TTCTTGGTTTAAATGGAACA+TGG 0.590885 4_2:-15118879 Msa0591040:CDS
GTTGCAAAGGTGAGTACTAG+AGG 0.597632 4_2:-15118944 Msa0591040:CDS
TTGCAAAGGTGAGTACTAGA+GGG 0.599847 4_2:-15118943 Msa0591040:CDS
GAGAACTATCTCCGGTGGGG+GGG 0.611049 4_2:+15119057 None:intergenic
TTGCGGCTATTGGACCGCCG+TGG 0.612852 4_2:+15119191 None:intergenic
TGTGCATAGTCCCAGATGAA+GGG 0.619561 4_2:-15119123 Msa0591040:CDS
ATGAGTTTGATCCAACGGCT+AGG 0.623677 4_2:+15118731 None:intergenic
AGCCGCAAGTGTTGGCCTAG+CGG 0.628784 4_2:-15119176 Msa0591040:CDS
GCTTCACCGAGAACTATCTC+CGG 0.641092 4_2:+15119049 None:intergenic
TACATAGGAAGTAGAATCGG+TGG 0.650114 4_2:-15118788 Msa0591040:CDS
ATAGGAAGTAGAATCGGTGG+TGG 0.655026 4_2:-15118785 Msa0591040:CDS
TGCAAAGGTGAGTACTAGAG+GGG 0.660954 4_2:-15118942 Msa0591040:CDS
TCTTGAAAGAGGCACACGTG+TGG 0.689378 4_2:-15118855 Msa0591040:CDS
GTAGAATGTTATTCCCACGG+CGG 0.814857 4_2:-15119205 Msa0591040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATGGTATTAATTATT+TGG - chr4_2:15119343-15119362 Msa0591040:intron 10.0%
!! TAATATGGTATTAATTATTT+GGG - chr4_2:15119344-15119363 Msa0591040:intron 10.0%
!! TTAATATGGTATTAATTATT+TGG - chr4_2:15119343-15119362 Msa0591040:intron 10.0%
!! TAATATGGTATTAATTATTT+GGG - chr4_2:15119344-15119363 Msa0591040:intron 10.0%
!! ACTAAAATTGAAAAAAGAAA+GGG + chr4_2:15118871-15118890 None:intergenic 15.0%
!! AACTAAAATTGAAAAAAGAA+AGG + chr4_2:15118872-15118891 None:intergenic 15.0%
!! AAGAAAAAATATTACAAAGA+GGG + chr4_2:15118896-15118915 None:intergenic 15.0%
!! AAAGAAAAAATATTACAAAG+AGG + chr4_2:15118897-15118916 None:intergenic 15.0%
!! GAAAAAAAATTATACAAAGA+GGG + chr4_2:15119171-15119190 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG + chr4_2:15119172-15119191 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG + chr4_2:15119280-15119299 None:intergenic 15.0%
!!! AAATTGATGATGTTTTAATA+TGG - chr4_2:15119329-15119348 Msa0591040:intron 15.0%
!! ACTAAAATTGAAAAAAGAAA+GGG + chr4_2:15118871-15118890 None:intergenic 15.0%
!! AACTAAAATTGAAAAAAGAA+AGG + chr4_2:15118872-15118891 None:intergenic 15.0%
!! AAGAAAAAATATTACAAAGA+GGG + chr4_2:15118896-15118915 None:intergenic 15.0%
!! AAAGAAAAAATATTACAAAG+AGG + chr4_2:15118897-15118916 None:intergenic 15.0%
!! GAAAAAAAATTATACAAAGA+GGG + chr4_2:15119171-15119190 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG + chr4_2:15119172-15119191 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG + chr4_2:15119280-15119299 None:intergenic 15.0%
!!! AAATTGATGATGTTTTAATA+TGG - chr4_2:15119329-15119348 Msa0591040:intron 15.0%
!!! TTTTAAGACAAATAACAACA+AGG + chr4_2:15119309-15119328 None:intergenic 20.0%
!!! TTTTAAGACAAATAACAACA+AGG + chr4_2:15119309-15119328 None:intergenic 20.0%
! ATAACATTCTACGATGAATT+TGG + chr4_2:15119448-15119467 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG - chr4_2:15119775-15119794 Msa0591040:intron 25.0%
! AAACTCATAGATCAAAAATC+AGG - chr4_2:15119945-15119964 Msa0591040:CDS 25.0%
! ATAACATTCTACGATGAATT+TGG + chr4_2:15119448-15119467 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG - chr4_2:15119775-15119794 Msa0591040:intron 25.0%
! AAACTCATAGATCAAAAATC+AGG - chr4_2:15119945-15119964 Msa0591040:CDS 25.0%
! AGTGTCTATGTAAGCTTTTA+AGG + chr4_2:15118722-15118741 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG + chr4_2:15118769-15118788 None:intergenic 30.0%
GTAAACTTATGTGATTGAAG+GGG + chr4_2:15119048-15119067 None:intergenic 30.0%
CGTAAACTTATGTGATTGAA+GGG + chr4_2:15119049-15119068 None:intergenic 30.0%
ACGTAAACTTATGTGATTGA+AGG + chr4_2:15119050-15119069 None:intergenic 30.0%
TACAAAGAGGGAAATGAAAA+TGG + chr4_2:15119159-15119178 None:intergenic 30.0%
CATATTATGTGATGTGATTG+CGG + chr4_2:15119223-15119242 None:intergenic 30.0%
! TTTTGGCATGTAAAAATGCA+TGG - chr4_2:15119745-15119764 Msa0591040:intron 30.0%
TTCTTGGTTTAAATGGAACA+TGG - chr4_2:15119782-15119801 Msa0591040:intron 30.0%
! AGTGTCTATGTAAGCTTTTA+AGG + chr4_2:15118722-15118741 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG + chr4_2:15118769-15118788 None:intergenic 30.0%
GTAAACTTATGTGATTGAAG+GGG + chr4_2:15119048-15119067 None:intergenic 30.0%
CGTAAACTTATGTGATTGAA+GGG + chr4_2:15119049-15119068 None:intergenic 30.0%
ACGTAAACTTATGTGATTGA+AGG + chr4_2:15119050-15119069 None:intergenic 30.0%
TACAAAGAGGGAAATGAAAA+TGG + chr4_2:15119159-15119178 None:intergenic 30.0%
CATATTATGTGATGTGATTG+CGG + chr4_2:15119223-15119242 None:intergenic 30.0%
! TTTTGGCATGTAAAAATGCA+TGG - chr4_2:15119745-15119764 Msa0591040:intron 30.0%
TTCTTGGTTTAAATGGAACA+TGG - chr4_2:15119782-15119801 Msa0591040:intron 30.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG + chr4_2:15118712-15118731 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG + chr4_2:15118761-15118780 None:intergenic 35.0%
AAGGGACAAAGAAAGAAGAA+GGG + chr4_2:15118853-15118872 None:intergenic 35.0%
AAAGGGACAAAGAAAGAAGA+AGG + chr4_2:15118854-15118873 None:intergenic 35.0%
GGGAAATGAAAATGGAAAAG+TGG + chr4_2:15119151-15119170 None:intergenic 35.0%
CGCAATCACATCACATAATA+TGG - chr4_2:15119221-15119240 Msa0591040:CDS 35.0%
ATTGCAGTGTGAGAAATTCA+AGG - chr4_2:15119374-15119393 Msa0591040:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG - chr4_2:15119381-15119400 Msa0591040:intron 35.0%
ATCGTAGAATGTTATTCCCA+CGG - chr4_2:15119453-15119472 Msa0591040:intron 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG - chr4_2:15119667-15119686 Msa0591040:intron 35.0%
CATGTAAAAATGCATGGCAA+AGG - chr4_2:15119751-15119770 Msa0591040:intron 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG - chr4_2:15119837-15119856 Msa0591040:intron 35.0%
GGTTTGGATATTGCTTACAT+AGG - chr4_2:15119858-15119877 Msa0591040:intron 35.0%
GCTTACATAGGAAGTAGAAT+CGG - chr4_2:15119870-15119889 Msa0591040:intron 35.0%
GATCTATGAGTTTGATCCAA+CGG + chr4_2:15119938-15119957 None:intergenic 35.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG + chr4_2:15118712-15118731 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG + chr4_2:15118761-15118780 None:intergenic 35.0%
AAGGGACAAAGAAAGAAGAA+GGG + chr4_2:15118853-15118872 None:intergenic 35.0%
AAAGGGACAAAGAAAGAAGA+AGG + chr4_2:15118854-15118873 None:intergenic 35.0%
GGGAAATGAAAATGGAAAAG+TGG + chr4_2:15119151-15119170 None:intergenic 35.0%
CGCAATCACATCACATAATA+TGG - chr4_2:15119221-15119240 Msa0591040:CDS 35.0%
ATTGCAGTGTGAGAAATTCA+AGG - chr4_2:15119374-15119393 Msa0591040:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG - chr4_2:15119381-15119400 Msa0591040:intron 35.0%
ATCGTAGAATGTTATTCCCA+CGG - chr4_2:15119453-15119472 Msa0591040:intron 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG - chr4_2:15119667-15119686 Msa0591040:intron 35.0%
CATGTAAAAATGCATGGCAA+AGG - chr4_2:15119751-15119770 Msa0591040:intron 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG - chr4_2:15119837-15119856 Msa0591040:intron 35.0%
GGTTTGGATATTGCTTACAT+AGG - chr4_2:15119858-15119877 Msa0591040:intron 35.0%
GCTTACATAGGAAGTAGAAT+CGG - chr4_2:15119870-15119889 Msa0591040:intron 35.0%
GATCTATGAGTTTGATCCAA+CGG + chr4_2:15119938-15119957 None:intergenic 35.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG + chr4_2:15118752-15118771 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG + chr4_2:15119436-15119455 None:intergenic 40.0%
GTAATCTTGACCCTTCATCT+GGG + chr4_2:15119551-15119570 None:intergenic 40.0%
TGTAATCTTGACCCTTCATC+TGG + chr4_2:15119552-15119571 None:intergenic 40.0%
ACGGTGATCAAAAGTCTTGA+TGG - chr4_2:15119639-15119658 Msa0591040:intron 40.0%
CGGTGATCAAAAGTCTTGAT+GGG - chr4_2:15119640-15119659 Msa0591040:intron 40.0%
! GATCAAAAGTCTTGATGGGT+TGG - chr4_2:15119644-15119663 Msa0591040:intron 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG - chr4_2:15119656-15119675 Msa0591040:intron 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG - chr4_2:15119686-15119705 Msa0591040:intron 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG - chr4_2:15119695-15119714 Msa0591040:intron 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG - chr4_2:15119704-15119723 Msa0591040:intron 40.0%
TTGCAAAGGTGAGTACTAGA+GGG - chr4_2:15119718-15119737 Msa0591040:intron 40.0%
GGCAAAGGTCAAATGTTTCT+TGG - chr4_2:15119766-15119785 Msa0591040:intron 40.0%
TGGAACATGGTTCTTGAAAG+AGG - chr4_2:15119795-15119814 Msa0591040:intron 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG - chr4_2:15119831-15119850 Msa0591040:intron 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG - chr4_2:15119836-15119855 Msa0591040:intron 40.0%
ATATCCAAACCCTTTCCAAC+AGG + chr4_2:15119849-15119868 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG - chr4_2:15119873-15119892 Msa0591040:intron 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG - chr4_2:15119902-15119921 Msa0591040:intron 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG - chr4_2:15119903-15119922 Msa0591040:intron 40.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG + chr4_2:15118752-15118771 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG + chr4_2:15119436-15119455 None:intergenic 40.0%
GTAATCTTGACCCTTCATCT+GGG + chr4_2:15119551-15119570 None:intergenic 40.0%
TGTAATCTTGACCCTTCATC+TGG + chr4_2:15119552-15119571 None:intergenic 40.0%
ACGGTGATCAAAAGTCTTGA+TGG - chr4_2:15119639-15119658 Msa0591040:intron 40.0%
CGGTGATCAAAAGTCTTGAT+GGG - chr4_2:15119640-15119659 Msa0591040:intron 40.0%
! GATCAAAAGTCTTGATGGGT+TGG - chr4_2:15119644-15119663 Msa0591040:intron 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG - chr4_2:15119656-15119675 Msa0591040:intron 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG - chr4_2:15119686-15119705 Msa0591040:intron 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG - chr4_2:15119695-15119714 Msa0591040:intron 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG - chr4_2:15119704-15119723 Msa0591040:intron 40.0%
TTGCAAAGGTGAGTACTAGA+GGG - chr4_2:15119718-15119737 Msa0591040:intron 40.0%
GGCAAAGGTCAAATGTTTCT+TGG - chr4_2:15119766-15119785 Msa0591040:intron 40.0%
TGGAACATGGTTCTTGAAAG+AGG - chr4_2:15119795-15119814 Msa0591040:intron 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG - chr4_2:15119831-15119850 Msa0591040:intron 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG - chr4_2:15119836-15119855 Msa0591040:intron 40.0%
ATATCCAAACCCTTTCCAAC+AGG + chr4_2:15119849-15119868 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG - chr4_2:15119873-15119892 Msa0591040:intron 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG - chr4_2:15119902-15119921 Msa0591040:intron 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG - chr4_2:15119903-15119922 Msa0591040:intron 40.0%
AGCTGAGCTTCTATCATCCA+TGG - chr4_2:15119407-15119426 Msa0591040:intron 45.0%
GTAGAATGTTATTCCCACGG+CGG - chr4_2:15119456-15119475 Msa0591040:intron 45.0%
TGTGCATAGTCCCAGATGAA+GGG - chr4_2:15119538-15119557 Msa0591040:intron 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG - chr4_2:15119659-15119678 Msa0591040:intron 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG - chr4_2:15119673-15119692 Msa0591040:intron 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG - chr4_2:15119674-15119693 Msa0591040:intron 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG - chr4_2:15119685-15119704 Msa0591040:intron 45.0%
GTTGCAAAGGTGAGTACTAG+AGG - chr4_2:15119717-15119736 Msa0591040:intron 45.0%
TGCAAAGGTGAGTACTAGAG+GGG - chr4_2:15119719-15119738 Msa0591040:intron 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG - chr4_2:15119842-15119861 Msa0591040:intron 45.0%
ATAGGAAGTAGAATCGGTGG+TGG - chr4_2:15119876-15119895 Msa0591040:intron 45.0%
ATGAGTTTGATCCAACGGCT+AGG + chr4_2:15119933-15119952 None:intergenic 45.0%
AGCTGAGCTTCTATCATCCA+TGG - chr4_2:15119407-15119426 Msa0591040:intron 45.0%
GTAGAATGTTATTCCCACGG+CGG - chr4_2:15119456-15119475 Msa0591040:intron 45.0%
TGTGCATAGTCCCAGATGAA+GGG - chr4_2:15119538-15119557 Msa0591040:intron 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG - chr4_2:15119659-15119678 Msa0591040:intron 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG - chr4_2:15119673-15119692 Msa0591040:intron 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG - chr4_2:15119674-15119693 Msa0591040:intron 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG - chr4_2:15119685-15119704 Msa0591040:intron 45.0%
GTTGCAAAGGTGAGTACTAG+AGG - chr4_2:15119717-15119736 Msa0591040:intron 45.0%
TGCAAAGGTGAGTACTAGAG+GGG - chr4_2:15119719-15119738 Msa0591040:intron 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG - chr4_2:15119842-15119861 Msa0591040:intron 45.0%
ATAGGAAGTAGAATCGGTGG+TGG - chr4_2:15119876-15119895 Msa0591040:intron 45.0%
ATGAGTTTGATCCAACGGCT+AGG + chr4_2:15119933-15119952 None:intergenic 45.0%
!! ATAATATATATTTGAAAAAT+TGG + chr4_2:15118926-15118945 None:intergenic 5.0%
!! ATAATATATATTTGAAAAAT+TGG + chr4_2:15118926-15118945 None:intergenic 5.0%
CTTCTATCATCCATGGCAGC+CGG - chr4_2:15119414-15119433 Msa0591040:intron 50.0%
TATGCACACGTGTCTTGCAC+CGG + chr4_2:15119526-15119545 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG - chr4_2:15119537-15119556 Msa0591040:intron 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG - chr4_2:15119576-15119595 Msa0591040:intron 50.0%
GCTTCACCGAGAACTATCTC+CGG + chr4_2:15119615-15119634 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG - chr4_2:15119620-15119639 Msa0591040:intron 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG - chr4_2:15119728-15119747 Msa0591040:intron 50.0%
! TCTTGAAAGAGGCACACGTG+TGG - chr4_2:15119806-15119825 Msa0591040:intron 50.0%
AGGCACACGTGTGGTTAGAT+CGG - chr4_2:15119815-15119834 Msa0591040:intron 50.0%
CTTCTATCATCCATGGCAGC+CGG - chr4_2:15119414-15119433 Msa0591040:intron 50.0%
TATGCACACGTGTCTTGCAC+CGG + chr4_2:15119526-15119545 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG - chr4_2:15119537-15119556 Msa0591040:intron 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG - chr4_2:15119576-15119595 Msa0591040:intron 50.0%
GCTTCACCGAGAACTATCTC+CGG + chr4_2:15119615-15119634 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG - chr4_2:15119620-15119639 Msa0591040:intron 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG - chr4_2:15119728-15119747 Msa0591040:intron 50.0%
! TCTTGAAAGAGGCACACGTG+TGG - chr4_2:15119806-15119825 Msa0591040:intron 50.0%
AGGCACACGTGTGGTTAGAT+CGG - chr4_2:15119815-15119834 Msa0591040:intron 50.0%
TATCATCCATGGCAGCCGGA+TGG - chr4_2:15119418-15119437 Msa0591040:intron 55.0%
GGTCCAATAGCCGCAAGTGT+TGG - chr4_2:15119477-15119496 Msa0591040:intron 55.0%
AGGCCAACACTTGCGGCTAT+TGG + chr4_2:15119483-15119502 None:intergenic 55.0%
AACCGCTAGGCCAACACTTG+CGG + chr4_2:15119490-15119509 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG - chr4_2:15119575-15119594 Msa0591040:intron 55.0%
GGATACACCCATCTCGGCTA+GGG + chr4_2:15119586-15119605 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG + chr4_2:15119610-15119629 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG + chr4_2:15119611-15119630 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG + chr4_2:15119612-15119631 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG - chr4_2:15119919-15119938 Msa0591040:CDS 55.0%
TATCATCCATGGCAGCCGGA+TGG - chr4_2:15119418-15119437 Msa0591040:intron 55.0%
GGTCCAATAGCCGCAAGTGT+TGG - chr4_2:15119477-15119496 Msa0591040:intron 55.0%
AGGCCAACACTTGCGGCTAT+TGG + chr4_2:15119483-15119502 None:intergenic 55.0%
AACCGCTAGGCCAACACTTG+CGG + chr4_2:15119490-15119509 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG - chr4_2:15119575-15119594 Msa0591040:intron 55.0%
GGATACACCCATCTCGGCTA+GGG + chr4_2:15119586-15119605 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG + chr4_2:15119610-15119629 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG + chr4_2:15119611-15119630 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG + chr4_2:15119612-15119631 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG - chr4_2:15119919-15119938 Msa0591040:CDS 55.0%
!! AGCCGCAAGTGTTGGCCTAG+CGG - chr4_2:15119485-15119504 Msa0591040:intron 60.0%
TGTTGCGAGCAGCAACCGCT+AGG + chr4_2:15119503-15119522 None:intergenic 60.0%
GGGATACACCCATCTCGGCT+AGG + chr4_2:15119587-15119606 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG + chr4_2:15119592-15119611 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG + chr4_2:15119607-15119626 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG + chr4_2:15119608-15119627 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG + chr4_2:15119609-15119628 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG - chr4_2:15119606-15119625 Msa0591040:intron 60.0%
!! AGCCGCAAGTGTTGGCCTAG+CGG - chr4_2:15119485-15119504 Msa0591040:intron 60.0%
TGTTGCGAGCAGCAACCGCT+AGG + chr4_2:15119503-15119522 None:intergenic 60.0%
GGGATACACCCATCTCGGCT+AGG + chr4_2:15119587-15119606 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG + chr4_2:15119592-15119611 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG + chr4_2:15119607-15119626 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG + chr4_2:15119608-15119627 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG + chr4_2:15119609-15119628 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG - chr4_2:15119606-15119625 Msa0591040:intron 60.0%
GGTGTTCCATCCGGCTGCCA+TGG + chr4_2:15119427-15119446 None:intergenic 65.0%
TGCGGCTATTGGACCGCCGT+GGG + chr4_2:15119472-15119491 None:intergenic 65.0%
TTGCGGCTATTGGACCGCCG+TGG + chr4_2:15119473-15119492 None:intergenic 65.0%
GCGGTTGCTGCTCGCAACAC+CGG - chr4_2:15119504-15119523 Msa0591040:intron 65.0%
GATGGGTGTATCCCCCCCAC+CGG - chr4_2:15119593-15119612 Msa0591040:intron 65.0%
GGTGTTCCATCCGGCTGCCA+TGG + chr4_2:15119427-15119446 None:intergenic 65.0%
TGCGGCTATTGGACCGCCGT+GGG + chr4_2:15119472-15119491 None:intergenic 65.0%
TTGCGGCTATTGGACCGCCG+TGG + chr4_2:15119473-15119492 None:intergenic 65.0%
GCGGTTGCTGCTCGCAACAC+CGG - chr4_2:15119504-15119523 Msa0591040:intron 65.0%
GATGGGTGTATCCCCCCCAC+CGG - chr4_2:15119593-15119612 Msa0591040:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 15118691 15119992 15118691 ID=Msa0591040;Name=Msa0591040
chr4_2 mRNA 15118691 15119992 15118691 ID=Msa0591040-mRNA-1;Parent=Msa0591040;Name=Msa0591040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|232
chr4_2 exon 15119906 15119992 15119906 ID=Msa0591040-mRNA-1:exon:4317;Parent=Msa0591040-mRNA-1
chr4_2 exon 15118691 15119302 15118691 ID=Msa0591040-mRNA-1:exon:4316;Parent=Msa0591040-mRNA-1
chr4_2 CDS 15119906 15119992 15119906 ID=Msa0591040-mRNA-1:cds;Parent=Msa0591040-mRNA-1
chr4_2 CDS 15118691 15119302 15118691 ID=Msa0591040-mRNA-1:cds;Parent=Msa0591040-mRNA-1
Gene Sequence

>Msa0591040

ATGAAGCTTGTTTGGTCTCCAGAAACTGCCTTAAAAGCTTACATAGACACTGTTAAATCCGTAAGCACCTTTCAACCTCAACAACAATGTGAGAAATTCAAGGAATCTGGAGTAGCTGAGCTTCTATCATCCATGGCAGCCGGATGGAACACCAAATTCATCGTAGAATGTTATTCCCACGGCGGTCCAATAGCCGCAAGTGTTGGCCTAGCGGTTGCTGCTCGCAACACCGGTGCAAGACACGTGTGCATAGTCCCAGATGAAGGGTCAAGATTACAATACACAAAAGCCCTAGCCGAGATGGGTGTATCCCCCCCACCGGAGATAGTTCTCGGTGAAGCGCAAACGGTGATCAAAAGTCTTGATGGGTTGGATTTTCTTGTGGTGGATTGTAGGCTTAGGGATTTTGCTAGGGTTCTTAAGGTTGCAAAGGTGAGTACTAGAGGGGCAGTTTTGGCATGTAAAAATGCATGGCAAAGGTCAAATGTTTCTTGGTTTAAATGGAACATGGTTCTTGAAAGAGGCACACGTGTGGTTAGATCGGTTTTTTTGCCTGTTGGAAAGGGTTTGGATATTGCTTACATAGGAAGTAGAATCGGTGGTGGTGCAGCTTCAAGTAGTGCTTCAAAGGGTACTCCTAGCCGTTGGATCAAACTCATAGATCAAAAATCAGGAGAAGAACATCTCTATAGAGAGTGA

Protein sequence

>Msa0591040

MKLVWSPETALKAYIDTVKSVSTFQPQQQCEKFKESGVAELLSSMAAGWNTKFIVECYSHGGPIAASVGLAVAARNTGARHVCIVPDEGSRLQYTKALAEMGVSPPPEIVLGEAQTVIKSLDGLDFLVVDCRLRDFARVLKVAKVSTRGAVLACKNAWQRSNVSWFKWNMVLERGTRVVRSVFLPVGKGLDIAYIGSRIGGGAASSSASKGTPSRWIKLIDQKSGEEHLYRE*