AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1432100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432100 MtrunA17_Chr5g0448751 88.005 767 36 6 17 782 1 712 0.0 1191
Msa1432100 MtrunA17_Chr3g0079741 37.719 684 315 14 121 768 124 732 4.17e-120 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432100 AT4G35440.1 56.172 721 225 9 76 777 52 700 0.0 702
Msa1432100 AT4G35440.2 56.084 715 223 9 76 771 52 694 0.0 697
Msa1432100 AT1G55620.2 37.326 718 354 11 79 768 104 753 2.18e-122 386
Msa1432100 AT1G55620.1 38.851 592 289 8 185 768 31 557 6.63e-102 326

Find 229 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAAATTATAATACATTT+TGG 0.076083 tig0026950:+26287 None:intergenic
CAATTCCCGCCCTTTCTTAA+AGG 0.140965 tig0026950:-32167 Msa1432100:CDS
TATGCCCCATCTCTCTTTAT+TGG 0.172919 tig0026950:-31351 Msa1432100:CDS
TAAAACAATGTGAAAATATT+TGG 0.195347 tig0026950:+26559 None:intergenic
GTAATACTTGTTCCCGCTTT+TGG 0.215841 tig0026950:-32235 Msa1432100:CDS
AAAAGCTTCTTTCCCTATAC+TGG 0.219006 tig0026950:-31565 Msa1432100:CDS
GATCTACAAGAAGATATTTC+TGG 0.225097 tig0026950:+29646 None:intergenic
TAATTATAGAAGGAAATTTA+AGG 0.225663 tig0026950:-26471 Msa1432100:three_prime_UTR
GCGGGAATTGAAATTGAAAT+TGG 0.229352 tig0026950:+32180 None:intergenic
AAACCCCAATAGAGGATTTC+AGG 0.241095 tig0026950:+31507 None:intergenic
TTCTGAATGGATTCGTAATT+CGG 0.248961 tig0026950:-32517 Msa1432100:CDS
TGCTTGGTTGGTCTCTTAAC+AGG 0.250823 tig0026950:-32480 Msa1432100:CDS
TTCAGTCTCTAACCCTTTCT+AGG 0.269824 tig0026950:+29971 None:intergenic
GAGCAGTAGGCTTGTCTTCA+TGG 0.271244 tig0026950:-29750 Msa1432100:CDS
GGTTTCAATGCTGCCGTTGC+TGG 0.284939 tig0026950:-31977 Msa1432100:CDS
GCTTCTGTCATTTCTGAGAT+TGG 0.287776 tig0026950:-31851 Msa1432100:CDS
CGTCACAAATCTTGTCTTCA+TGG 0.289773 tig0026950:+29483 None:intergenic
CTCTTTATTGGTGGTGCAAC+TGG 0.292571 tig0026950:-31339 Msa1432100:CDS
GGTTAAACTTGACGTGTTAA+AGG 0.299752 tig0026950:+26622 None:intergenic
GTTGCATCACCACAAGCTTA+TGG 0.300491 tig0026950:-31243 Msa1432100:CDS
CATTCGAGCGTTTGGAAAAT+CGG 0.306344 tig0026950:-29344 Msa1432100:CDS
ATATCCTGAAATCCTCTATT+GGG 0.308167 tig0026950:-31511 Msa1432100:CDS
TATATCCTGAAATCCTCTAT+TGG 0.313244 tig0026950:-31512 Msa1432100:CDS
CTTGGAGACATTCGAGCGTT+TGG 0.318252 tig0026950:-29352 Msa1432100:CDS
GGAATGGCTGCGACTCTTGC+AGG 0.323506 tig0026950:-29853 Msa1432100:CDS
AGCTCGGAGGGGAAGGAGTT+TGG 0.326802 tig0026950:+32027 None:intergenic
ATGTACAGTTACTCCTGATA+TGG 0.337075 tig0026950:-28758 Msa1432100:CDS
CTTAGCTGATGTTCCAAGTT+AGG 0.341603 tig0026950:-26690 Msa1432100:exon
ACTTAGGAATGATACAATTA+TGG 0.347813 tig0026950:-32923 Msa1432100:five_prime_UTR
TTTGTTGTGGGATGGGATTC+CGG 0.349408 tig0026950:-32311 Msa1432100:CDS
GCTGCTACACTTTGATTTGT+TGG 0.351267 tig0026950:-30038 Msa1432100:CDS
CTCCTTCCCCTCCGAGCTGC+TGG 0.352742 tig0026950:-32022 Msa1432100:CDS
TCATAGATATTCTTCACAAC+TGG 0.355678 tig0026950:+28685 None:intergenic
CACTTGAGTGACTTTGAGTT+TGG 0.356054 tig0026950:+26426 None:intergenic
TTTAGGCACTGGTAATTCCT+TGG 0.356178 tig0026950:-32125 Msa1432100:CDS
ACTTCTCTCTGTCGTGCTTC+CGG 0.359138 tig0026950:-31390 Msa1432100:CDS
CTCCCGCTGTATTTATTGTT+GGG 0.360626 tig0026950:-31681 Msa1432100:CDS
GGATTATCTTTAATTATAGA+AGG 0.363447 tig0026950:-26481 Msa1432100:three_prime_UTR
GATACTGATGATACTTTGAT+TGG 0.372612 tig0026950:-29385 Msa1432100:CDS
ATTGCAGCTTCTATTACTTT+AGG 0.372973 tig0026950:-32142 Msa1432100:CDS
CAGATAAACCTCCCAGTATA+GGG 0.373492 tig0026950:+31553 None:intergenic
TATATGATGTAGACCAAGAT+AGG 0.374540 tig0026950:+31631 None:intergenic
ACAACCACCACAGAATTAAA+TGG 0.376850 tig0026950:+26596 None:intergenic
TCGTTTCATTGACCCTATCT+TGG 0.384744 tig0026950:-31644 Msa1432100:CDS
TCTGAATGGATTCGTAATTC+GGG 0.387923 tig0026950:-32516 Msa1432100:CDS
GATGGAATAATGGGTGGCTT+AGG 0.388765 tig0026950:-32771 Msa1432100:CDS
TTAGGCACTGGTAATTCCTT+GGG 0.389974 tig0026950:-32124 Msa1432100:CDS
AACTTATCCAATTGGCCTAC+TGG 0.394323 tig0026950:-28659 Msa1432100:CDS
TGAAATTGAAATTGGAAAGA+AGG 0.394886 tig0026950:+32188 None:intergenic
GGTGCAACTGGTATGGCTTA+TGG 0.397493 tig0026950:-31327 Msa1432100:CDS
GCATGATAAAGTTCCATATC+AGG 0.402519 tig0026950:+28745 None:intergenic
ACAGATAAACCTCCCAGTAT+AGG 0.404053 tig0026950:+31552 None:intergenic
TCTGCTGCCGGCCTCTCTGC+TGG 0.404243 tig0026950:-31998 Msa1432100:CDS
AACCATGAGGCACCTCTATC+CGG 0.405987 tig0026950:+32292 None:intergenic
GCTCCCGCTGTATTTATTGT+TGG 0.406865 tig0026950:-31682 Msa1432100:CDS
TGCAATAACAGTAACACGTT+CGG 0.407092 tig0026950:-32676 Msa1432100:CDS
TTTGGAAAATCGGCAAAGTC+TGG 0.407852 tig0026950:-29334 Msa1432100:CDS
ATGAGTTGTTGTTGTTATAG+TGG 0.414832 tig0026950:-32810 Msa1432100:CDS
CTGCTACACTTTGATTTGTT+GGG 0.415556 tig0026950:-30037 Msa1432100:CDS
AACATACTCCCACTAGTAAT+AGG 0.418105 tig0026950:+26335 None:intergenic
TTGCATCACCACAAGCTTAT+GGG 0.419579 tig0026950:-31242 Msa1432100:CDS
GCCCCATCTCTCTTTATTGG+TGG 0.420047 tig0026950:-31348 Msa1432100:CDS
GCCAACTTCACAACTACTAA+TGG 0.423560 tig0026950:-32618 Msa1432100:CDS
AGTATAGGGAAAGAAGCTTT+TGG 0.424009 tig0026950:+31567 None:intergenic
ATAATATCTTCATGCTTGGT+TGG 0.426952 tig0026950:-32492 Msa1432100:CDS
TTATTGTTGGGTATCTTATG+TGG 0.429316 tig0026950:-31669 Msa1432100:CDS
CAGCGTATGGTTGTCTATGC+TGG 0.432242 tig0026950:-30064 Msa1432100:CDS
ACAGTATCAGTTTAACATAC+AGG 0.433565 tig0026950:-28630 Msa1432100:intron
GGGAATAATATCTTCATGCT+TGG 0.434628 tig0026950:-32496 Msa1432100:CDS
TATGAAAGAACTTATCCAAT+TGG 0.435410 tig0026950:-28667 Msa1432100:CDS
ATCCAGCAGCTCGGAGGGGA+AGG 0.438621 tig0026950:+32020 None:intergenic
TTCGTGATTTGTTGTGGGAT+GGG 0.439926 tig0026950:-32318 Msa1432100:CDS
TTTGCTGCTGAGTATTCTTA+CGG 0.441301 tig0026950:+26534 None:intergenic
TTCCTGCCCTCCTCCTAACT+TGG 0.442012 tig0026950:+26677 None:intergenic
GCAATAACAGTAACACGTTC+GGG 0.445751 tig0026950:-32675 Msa1432100:CDS
TGTAAGGAGAACATTAGTTT+CGG 0.452473 tig0026950:-29509 Msa1432100:CDS
TGTTGTTGAATGCAGTGCTT+TGG 0.452645 tig0026950:-26727 Msa1432100:intron
TGTTTGAGGAAGAAGAAGAA+AGG 0.453309 tig0026950:+32649 None:intergenic
TATTGGTGGTGCAACTGGTA+TGG 0.455094 tig0026950:-31334 Msa1432100:CDS
GACAAAGAGAGGTGATGAAA+GGG 0.455593 tig0026950:-29713 Msa1432100:CDS
GGAGAACGAAAGTCGTAGTC+TGG 0.455808 tig0026950:+31800 None:intergenic
GTCATTTCTGAGATTGGCCT+CGG 0.456281 tig0026950:-31845 Msa1432100:CDS
CAGTGGAAGTAGTATTGGTA+AGG 0.459156 tig0026950:+31894 None:intergenic
TACGACTTTCGTTCTCCTGC+TGG 0.462599 tig0026950:-31794 Msa1432100:intron
ATAATAGCCTCCTACTAATC+CGG 0.472882 tig0026950:+31371 None:intergenic
AGCAGATCCAGCAGCTCGGA+GGG 0.474259 tig0026950:+32015 None:intergenic
ATGAAACAATGAATTATGTA+AGG 0.474357 tig0026950:-29525 Msa1432100:CDS
TCGGGGTCCAGTAGGCCAAT+TGG 0.474571 tig0026950:+28652 None:intergenic
GGGGAAGAAGATGGAATAAT+GGG 0.474940 tig0026950:-32780 Msa1432100:CDS
AATAACAGTGGAAGTAGTAT+TGG 0.476615 tig0026950:+31889 None:intergenic
AGAGAAGGAGAAGTTGAGGA+AGG 0.476894 tig0026950:-32558 Msa1432100:CDS
CAAGAAGATATTTCTGGAAA+CGG 0.477909 tig0026950:+29652 None:intergenic
TTGGAAATTCCATTGCCAAA+TGG 0.479995 tig0026950:-32078 Msa1432100:CDS
TTCCAAGTTAGGAGGAGGGC+AGG 0.482390 tig0026950:-26679 Msa1432100:three_prime_UTR
CGTGGAGAGACCTTTGACAA+AGG 0.482833 tig0026950:+31452 None:intergenic
GATAATAGAAATTTATCAAA+CGG 0.485290 tig0026950:+26647 None:intergenic
AACCATGCCATTTAATTCTG+TGG 0.485418 tig0026950:-26603 Msa1432100:three_prime_UTR
CTATTCAAGAAACATGGAAA+AGG 0.487861 tig0026950:-32258 Msa1432100:CDS
TGGTAATTCCTTGGGTCCTG+AGG 0.487982 tig0026950:-32116 Msa1432100:CDS
ATGAAATTCGTGATTTGTTG+TGG 0.489249 tig0026950:-32324 Msa1432100:CDS
TATGTTAAACTGATACTGTC+GGG 0.491201 tig0026950:+28634 None:intergenic
ATGTCGACGCTGGGACCCTC+AGG 0.492267 tig0026950:+32100 None:intergenic
TCACACTCGCACTCAAAAGA+TGG 0.492706 tig0026950:+26392 None:intergenic
TGTTGTTATAGTGGAATGGC+GGG 0.494003 tig0026950:-32801 Msa1432100:CDS
AGGAGTGGAAGCAATCCATT+TGG 0.495533 tig0026950:+32063 None:intergenic
AACAAGAAGACCTCCAAAAG+CGG 0.500440 tig0026950:+32222 None:intergenic
GCTTCTATTACTTTAGGCAC+TGG 0.501302 tig0026950:-32136 Msa1432100:CDS
CGAGCTGCTGGATCTGCTGC+CGG 0.501727 tig0026950:-32010 Msa1432100:CDS
CAGCCATTCCAACCTGCAAA+AGG 0.502309 tig0026950:+29866 None:intergenic
TGAAATTCGTGATTTGTTGT+GGG 0.502918 tig0026950:-32323 Msa1432100:CDS
CGCACTCAAAAGATGGAACA+TGG 0.503718 tig0026950:+26399 None:intergenic
CATTCTCAAAACCCCAATAG+AGG 0.505904 tig0026950:+31499 None:intergenic
GGAATTTCCAATGTCGACGC+TGG 0.506064 tig0026950:+32090 None:intergenic
GGAGTATGTTGCAATGCAAT+GGG 0.506248 tig0026950:-26322 Msa1432100:three_prime_UTR
AGATCAATTGAGTTATCTAC+TGG 0.506435 tig0026950:-29628 Msa1432100:CDS
TGTGATTAACCTCTCTCTGT+TGG 0.506709 tig0026950:-31268 Msa1432100:CDS
GCTGCAATAGCCTTTAAGAA+AGG 0.508201 tig0026950:+32157 None:intergenic
TTGTTGTTATAGTGGAATGG+CGG 0.509331 tig0026950:-32802 Msa1432100:CDS
ACCATTAGTAGTTGTGAAGT+TGG 0.509522 tig0026950:+32617 None:intergenic
GACAATCTTCACAAGGCCAC+TGG 0.512827 tig0026950:-31594 Msa1432100:CDS
TTAGGATGTGCGGTTGGAGT+CGG 0.514567 tig0026950:-32753 Msa1432100:CDS
ATTGAAACCAGCAGAGAGGC+CGG 0.514866 tig0026950:+31991 None:intergenic
CACCACCAATAAAGAGAGAT+GGG 0.516008 tig0026950:+31346 None:intergenic
TCGGAGGGGAAGGAGTTTGG+CGG 0.517789 tig0026950:+32030 None:intergenic
CTATCTTTGCTATTGTGAAG+CGG 0.518762 tig0026950:+32579 None:intergenic
TATTCAAGAAACATGGAAAA+GGG 0.520527 tig0026950:-32257 Msa1432100:CDS
CTGCAATAGCCTTTAAGAAA+GGG 0.524525 tig0026950:+32158 None:intergenic
GAGTTCTTCAACCAAGTAGT+TGG 0.525868 tig0026950:-32725 Msa1432100:CDS
TTGTTATAGTGGAATGGCGG+GGG 0.528796 tig0026950:-32799 Msa1432100:CDS
TTGAATTGACACAGGACTAT+CGG 0.531346 tig0026950:-29792 Msa1432100:CDS
GGTAATTCCTTGGGTCCTGA+GGG 0.533941 tig0026950:-32115 Msa1432100:CDS
ACAAGAAGACCTCCAAAAGC+GGG 0.535676 tig0026950:+32223 None:intergenic
AGATAGAGAAGGAGAAGTTG+AGG 0.535908 tig0026950:-32562 Msa1432100:CDS
TAGTCTGGAACTTGAAAGGC+AGG 0.536027 tig0026950:+31815 None:intergenic
ATTCGTGATTTGTTGTGGGA+TGG 0.536955 tig0026950:-32319 Msa1432100:CDS
GAATCTCGACCCTTTGTCAA+AGG 0.536999 tig0026950:-31462 Msa1432100:CDS
GAGGGTCCCAGCGTCGACAT+TGG 0.538932 tig0026950:-32097 Msa1432100:CDS
TGATGATAATGCCAACTACT+TGG 0.542078 tig0026950:+32714 None:intergenic
TTGATTGGTTTATTGACACT+TGG 0.544041 tig0026950:-29370 Msa1432100:CDS
TTACCACTACTTGGAGCAGT+AGG 0.544067 tig0026950:-29763 Msa1432100:CDS
AGCGAAGAAACAACCAGCAA+CGG 0.545696 tig0026950:+31964 None:intergenic
AGACAAAGAGAGGTGATGAA+AGG 0.546343 tig0026950:-29714 Msa1432100:CDS
AGTTTGGCGGAAGTGAAAAG+AGG 0.546347 tig0026950:+32043 None:intergenic
GTGGAGAGACCTTTGACAAA+GGG 0.546880 tig0026950:+31453 None:intergenic
ATACTGGGAGGTTTATCTGT+AGG 0.547076 tig0026950:-31549 Msa1432100:CDS
AGAAGCAGAACTGCAGTAAG+TGG 0.547744 tig0026950:+29817 None:intergenic
GAACTGCAGTAAGTGGTACT+TGG 0.552159 tig0026950:+29824 None:intergenic
TGATGTTCCAAGTTAGGAGG+AGG 0.552417 tig0026950:-26684 Msa1432100:three_prime_UTR
AAAGCTTCTTTCCCTATACT+GGG 0.555375 tig0026950:-31564 Msa1432100:CDS
CATGAAGACAAGATTTGTGA+CGG 0.555715 tig0026950:-29482 Msa1432100:CDS
TTGTTGTTGTTATAGTGGAA+TGG 0.555761 tig0026950:-32805 Msa1432100:CDS
CGGCAGCAGATCCAGCAGCT+CGG 0.555894 tig0026950:+32011 None:intergenic
GTATGTTAAACTGATACTGT+CGG 0.556759 tig0026950:+28633 None:intergenic
GCACCACCAATAAAGAGAGA+TGG 0.559910 tig0026950:+31345 None:intergenic
GGAGAGTTCAAGTAGTGTAG+AGG 0.565036 tig0026950:-29557 Msa1432100:CDS
AAGTTAGGAGGAGGGCAGGA+AGG 0.567793 tig0026950:-26675 Msa1432100:three_prime_UTR
TTTGAGTAAATCATGTCAAG+TGG 0.568231 tig0026950:-29578 Msa1432100:CDS
AGCTGATGTTCCAAGTTAGG+AGG 0.570657 tig0026950:-26687 Msa1432100:exon
AGATCTATTACTTTAGTAAG+CGG 0.571523 tig0026950:+29445 None:intergenic
CAAGGATTACAACAACACTT+AGG 0.572730 tig0026950:-32939 None:intergenic
GCTGGGACCCTCAGGACCCA+AGG 0.573710 tig0026950:+32108 None:intergenic
GTTGGCGTAATTCTTGTTTG+AGG 0.573848 tig0026950:+32635 None:intergenic
TACCCAACAATAAATACAGC+GGG 0.573907 tig0026950:+31679 None:intergenic
GAAAAGAAGCTGGCGTGGCA+CGG 0.574919 tig0026950:-29906 Msa1432100:CDS
GGGAGTATGTTGCAATGCAA+TGG 0.575780 tig0026950:-26323 Msa1432100:three_prime_UTR
CAAATGATCATGAAGGAACA+TGG 0.575801 tig0026950:-28721 Msa1432100:CDS
AAATGTTCAGGAAAAGAAGC+TGG 0.576187 tig0026950:-29916 Msa1432100:intron
GAATTTCCAATGTCGACGCT+GGG 0.578311 tig0026950:+32091 None:intergenic
GTCGTAGTCTGGAACTTGAA+AGG 0.578609 tig0026950:+31811 None:intergenic
CAGGATATAGCAATGCTATG+AGG 0.579477 tig0026950:+31526 None:intergenic
TCATGCTCAAATGATCATGA+AGG 0.580187 tig0026950:-28728 Msa1432100:CDS
CACCACAGAATTAAATGGCA+TGG 0.581225 tig0026950:+26601 None:intergenic
AGTGGAAGTAGTATTGGTAA+GGG 0.581373 tig0026950:+31895 None:intergenic
TGGGATGGGATTCCGGATAG+AGG 0.587719 tig0026950:-32304 Msa1432100:CDS
AATAGCCTTTAAGAAAGGGC+GGG 0.587840 tig0026950:+32162 None:intergenic
ATCACCACAAGCTTATGGGC+TGG 0.588084 tig0026950:-31238 Msa1432100:intron
CACAATAGCAAAGATAGAGA+AGG 0.590816 tig0026950:-32573 Msa1432100:CDS
CAGCAGATCCAGCAGCTCGG+AGG 0.593260 tig0026950:+32014 None:intergenic
GTCTGGAAGCGAAAATCGAA+AGG 0.593828 tig0026950:-29317 Msa1432100:intron
GCAGATCCAGCAGCTCGGAG+GGG 0.594250 tig0026950:+32016 None:intergenic
GTTGTTATAGTGGAATGGCG+GGG 0.594261 tig0026950:-32800 Msa1432100:CDS
GCTTCTGTTTGAATTGACAC+AGG 0.594321 tig0026950:-29800 Msa1432100:CDS
CTAACTTGGAACATCAGCTA+AGG 0.594396 tig0026950:+26691 None:intergenic
CCACATGTACCTATTACTAG+TGG 0.594959 tig0026950:-26344 Msa1432100:three_prime_UTR
CGTTCTCTGTCTTACATCAG+AGG 0.596320 tig0026950:+26506 None:intergenic
GGCGGAAGTGAAAAGAGGAG+TGG 0.597862 tig0026950:+32048 None:intergenic
CAAACTCAAAGTCACTCAAG+TGG 0.598578 tig0026950:-26425 Msa1432100:three_prime_UTR
GGAAGCAATCCATTTGGCAA+TGG 0.599286 tig0026950:+32069 None:intergenic
AACAGAGAGAGGTTAATCAC+AGG 0.599581 tig0026950:+31270 None:intergenic
CATGCCATTTAATTCTGTGG+TGG 0.601477 tig0026950:-26600 Msa1432100:three_prime_UTR
TTCCGGATAGAGGTGCCTCA+TGG 0.606371 tig0026950:-32294 Msa1432100:CDS
TCGCTGTTGAGTCTGTCTTG+TGG 0.606446 tig0026950:-31946 Msa1432100:CDS
TATCCTGAAATCCTCTATTG+GGG 0.606610 tig0026950:-31510 Msa1432100:CDS
CAATAGCCTTTAAGAAAGGG+CGG 0.607717 tig0026950:+32161 None:intergenic
TTCAGGAAAAGAAGCTGGCG+TGG 0.609126 tig0026950:-29911 Msa1432100:intron
ATATGATGTAGACCAAGATA+GGG 0.610894 tig0026950:+31632 None:intergenic
TTAGAAGAATCAGAATCAGA+AGG 0.614728 tig0026950:+31923 None:intergenic
TAACTTGGAACATCAGCTAA+GGG 0.615630 tig0026950:+26692 None:intergenic
AAGCCTACTGCTCCAAGTAG+TGG 0.620361 tig0026950:+29760 None:intergenic
ATATCAGGAGTAACTGTACA+TGG 0.620693 tig0026950:+28760 None:intergenic
CACATGTACCTATTACTAGT+GGG 0.622851 tig0026950:-26343 Msa1432100:three_prime_UTR
ATGCAACTTCCAACAGAGAG+AGG 0.623135 tig0026950:+31259 None:intergenic
GATGTTCCAAGTTAGGAGGA+GGG 0.627558 tig0026950:-26683 Msa1432100:three_prime_UTR
AAGCGCCTATTCAAGAAACA+TGG 0.627826 tig0026950:-32264 Msa1432100:CDS
GGTGGCTTAGGATGTGCGGT+TGG 0.630689 tig0026950:-32759 Msa1432100:CDS
ACTGGTAATACCTCTGCTGA+AGG 0.643612 tig0026950:-29610 Msa1432100:CDS
CCACTAGTAATAGGTACATG+TGG 0.644882 tig0026950:+26344 None:intergenic
TCATCTGTACAGACAAAGAG+AGG 0.647494 tig0026950:-29724 Msa1432100:CDS
GCTTCTTTCCCTATACTGGG+AGG 0.653552 tig0026950:-31561 Msa1432100:CDS
ATATGACACACCTTCAGCAG+AGG 0.656977 tig0026950:+29600 None:intergenic
GACAGCACTTAGAATAACAG+TGG 0.657583 tig0026950:+31877 None:intergenic
CTTTGTCAAAGGTCTCTCCA+CGG 0.660620 tig0026950:-31451 Msa1432100:CDS
TTTATTTGACAATCTTCACA+AGG 0.665068 tig0026950:-31601 Msa1432100:CDS
ATGTTAAACTGATACTGTCG+GGG 0.666937 tig0026950:+28635 None:intergenic
CGTACCAGCCCATAAGCTTG+TGG 0.669025 tig0026950:+31234 None:intergenic
TAGCTGAAGCAATAGATCCG+TGG 0.670137 tig0026950:+31434 None:intergenic
ACTTCACAACTACTAATGGT+CGG 0.672014 tig0026950:-32614 Msa1432100:CDS
GAAGAAGATGGAATAATGGG+TGG 0.676584 tig0026950:-32777 Msa1432100:CDS
TCAGCTAAGGGACTGTATCG+TGG 0.677480 tig0026950:+26704 None:intergenic
TCTATTGCTTCAGCTAATAG+CGG 0.683916 tig0026950:-31427 Msa1432100:CDS
AATGGGTGGCTTAGGATGTG+CGG 0.692887 tig0026950:-32763 Msa1432100:CDS
CAGCATTGAAACCAGCAGAG+AGG 0.695496 tig0026950:+31987 None:intergenic
TGATGTAAGACAGAGAACGA+TGG 0.697813 tig0026950:-26502 Msa1432100:three_prime_UTR
GCACTCAAAAGATGGAACAT+GGG 0.703388 tig0026950:+26400 None:intergenic
ATACCCAACAATAAATACAG+CGG 0.708432 tig0026950:+31678 None:intergenic
ACCACCAATAAAGAGAGATG+GGG 0.717265 tig0026950:+31347 None:intergenic
AGGCGCTTCTCTCAACCATG+AGG 0.726086 tig0026950:+32279 None:intergenic
AAGATAGGGTCAATGAAACG+AGG 0.733840 tig0026950:+31646 None:intergenic
GAGTATGTTGCAATGCAATG+GGG 0.778875 tig0026950:-26321 Msa1432100:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATATTATATATATC+AGG + tig0026950:27465-27484 None:intergenic 10.0%
!! TGAAATTAAATAAATATGTT+CGG + tig0026950:30670-30689 None:intergenic 10.0%
!!! AATTTATTTCTTATTTTGAA+AGG - tig0026950:30690-30709 Msa1432100:intron 10.0%
!! TGATAATAACTATGAAATAT+AGG - tig0026950:28470-28489 Msa1432100:intron 15.0%
!! AGATTAATTTCTTATCTTAT+AGG + tig0026950:28530-28549 None:intergenic 15.0%
!!! GATATTATTTTATAGTATCT+TGG + tig0026950:28564-28583 None:intergenic 15.0%
!!! CATTTTTTATATCTACATTT+GGG + tig0026950:30110-30129 None:intergenic 15.0%
!!! ACATTTTTTATATCTACATT+TGG + tig0026950:30111-30130 None:intergenic 15.0%
!! GTATATATTGATATAGTAAA+AGG + tig0026950:30278-30297 None:intergenic 15.0%
!!! TTTTAGTATTTCCTTTATTA+TGG + tig0026950:30867-30886 None:intergenic 15.0%
!! TAATAAAGGAAATACTAAAA+TGG - tig0026950:30867-30886 Msa1432100:intron 15.0%
!!! TCAAAAGTTTTAAAAGAAAA+TGG + tig0026950:32059-32078 None:intergenic 15.0%
!!! TCTTTTAAAACTTTTGAAAA+TGG - tig0026950:32062-32081 Msa1432100:CDS 15.0%
!!! AAATGTTTTTAGAAAGTAAA+CGG - tig0026950:32237-32256 Msa1432100:CDS 15.0%
!! GATAATAGAAATTTATCAAA+CGG + tig0026950:32539-32558 None:intergenic 15.0%
!! TAAAACAATGTGAAAATATT+TGG + tig0026950:32627-32646 None:intergenic 15.0%
!! TAATTATAGAAGGAAATTTA+AGG - tig0026950:32712-32731 Msa1432100:CDS 15.0%
!! CATCATACTTAAAAAAAGAA+AGG + tig0026950:26804-26823 None:intergenic 20.0%
!! TTCAAAATCATGATATGAAT+CGG + tig0026950:27426-27445 None:intergenic 20.0%
!! ATAACAAGATAATATATTGC+AGG + tig0026950:28234-28253 None:intergenic 20.0%
!! ATAAATCTATGAATTCAGAA+TGG - tig0026950:28637-28656 Msa1432100:CDS 20.0%
!!! TGTTTGAAACAAATAAGAAA+AGG - tig0026950:28857-28876 Msa1432100:intron 20.0%
!!! GTTTGAAACAAATAAGAAAA+GGG - tig0026950:28858-28877 Msa1432100:intron 20.0%
!! TGTAATATATAGTAGTAACA+TGG - tig0026950:28988-29007 Msa1432100:intron 20.0%
!!! AAAATTTTCTCATATCATGT+GGG - tig0026950:29014-29033 Msa1432100:intron 20.0%
!! AGACAAATGATATAATATAC+TGG + tig0026950:29242-29261 None:intergenic 20.0%
!! ATGAAACAATGAATTATGTA+AGG - tig0026950:29658-29677 Msa1432100:CDS 20.0%
!! TGATACATAAGATAATAGAT+TGG - tig0026950:30017-30036 Msa1432100:CDS 20.0%
!!! TCTGAATTATGTGTTTTAAA+TGG - tig0026950:30384-30403 Msa1432100:intron 20.0%
!!! CTAAACCAATTTTATGAAAA+GGG + tig0026950:30624-30643 None:intergenic 20.0%
!!! ACTAAACCAATTTTATGAAA+AGG + tig0026950:30625-30644 None:intergenic 20.0%
!! TCACTTAAACTAATAAACAT+AGG - tig0026950:30946-30965 Msa1432100:intron 20.0%
!!! TCGATTTTCAATGAATTTTT+TGG - tig0026950:31382-31401 Msa1432100:CDS 20.0%
!!! CGATTTTCAATGAATTTTTT+GGG - tig0026950:31383-31402 Msa1432100:CDS 20.0%
!! ATACAAAATCCTTATAATGA+CGG + tig0026950:31724-31743 None:intergenic 20.0%
!! GTGAGAAAAATATTAAATCT+AGG + tig0026950:32037-32056 None:intergenic 20.0%
!! GGATTATCTTTAATTATAGA+AGG - tig0026950:32702-32721 Msa1432100:CDS 20.0%
! ACTTAGGAATGATACAATTA+TGG - tig0026950:26260-26279 Msa1432100:three_prime_UTR 25.0%
! TATTCAAGAAACATGGAAAA+GGG - tig0026950:26926-26945 Msa1432100:intron 25.0%
! TGAAATTGAAATTGGAAAGA+AGG + tig0026950:26998-27017 None:intergenic 25.0%
! TTTATTTGACAATCTTCACA+AGG - tig0026950:27582-27601 Msa1432100:intron 25.0%
!!! TTTGGTATTTCTTGTTTTCT+TGG - tig0026950:27995-28014 Msa1432100:intron 25.0%
! CGTTAAATTAGTAAACCTTA+TGG + tig0026950:28178-28197 None:intergenic 25.0%
!! TATCTTGTTATCTTAGTTGA+AGG - tig0026950:28243-28262 Msa1432100:intron 25.0%
!! GCTTATTTCTCATAAAGAAA+AGG + tig0026950:28273-28292 None:intergenic 25.0%
! ATAAGTTTCCTTGTGTAATT+AGG + tig0026950:28448-28467 None:intergenic 25.0%
!!! TAGTCTAAGATATTTTGAGA+TGG - tig0026950:28495-28514 Msa1432100:intron 25.0%
!!! AGTCTAAGATATTTTGAGAT+GGG - tig0026950:28496-28515 Msa1432100:intron 25.0%
!!! TTTGTATCAAGTTTTATCGT+GGG + tig0026950:28616-28635 None:intergenic 25.0%
!!! TTTTGTATCAAGTTTTATCG+TGG + tig0026950:28617-28636 None:intergenic 25.0%
!!! TATGAATTCAGAATGGATTA+GGG - tig0026950:28644-28663 Msa1432100:CDS 25.0%
! AAAACAAACTAAAACGGTAT+TGG - tig0026950:28729-28748 Msa1432100:CDS 25.0%
! AAACAAACTAAAACGGTATT+GGG - tig0026950:28730-28749 Msa1432100:CDS 25.0%
! ATCTTCCATGATAAAGAAAA+AGG - tig0026950:28900-28919 Msa1432100:intron 25.0%
!! GAAAATTTTCTCATATCATG+TGG - tig0026950:29013-29032 Msa1432100:intron 25.0%
!! TCAGAGTTCAAAACAAATTT+TGG - tig0026950:29072-29091 Msa1432100:intron 25.0%
! AGATCTATTACTTTAGTAAG+CGG + tig0026950:29741-29760 None:intergenic 25.0%
! CTTACAGTTGTAAATATTCT+AGG + tig0026950:29956-29975 None:intergenic 25.0%
! GGGTTAAATGTAATAAATGT+TGG + tig0026950:30090-30109 None:intergenic 25.0%
! CTAGTTTACATTACATCTAT+AGG + tig0026950:30139-30158 None:intergenic 25.0%
!!! GAATTATGTGTTTTAAATGG+AGG - tig0026950:30387-30406 Msa1432100:intron 25.0%
! TATGAAAGAACTTATCCAAT+TGG - tig0026950:30516-30535 Msa1432100:intron 25.0%
!! ATGATCCCTTTTCATAAAAT+TGG - tig0026950:30616-30635 Msa1432100:intron 25.0%
! TAAAGGAAATACTAAAATGG+TGG - tig0026950:30870-30889 Msa1432100:intron 25.0%
! GTTTAAGTGAAAATGAAAAC+AGG + tig0026950:30936-30955 None:intergenic 25.0%
! CATAGGAGAATATAGATTTA+AGG - tig0026950:30963-30982 Msa1432100:intron 25.0%
!!! CACTTTTTTTTGTTTGGTTT+AGG - tig0026950:31040-31059 Msa1432100:intron 25.0%
! ATATCAAACACGAAAGAAAA+GGG - tig0026950:31284-31303 Msa1432100:CDS 25.0%
!!! ACAAATTTTTTCCAAAATGC+AGG - tig0026950:31932-31951 Msa1432100:CDS 25.0%
!!! CAAATTTTTTCCAAAATGCA+GGG - tig0026950:31933-31952 Msa1432100:CDS 25.0%
! AAATTAGAAGCAACTTTATG+TGG - tig0026950:32306-32325 Msa1432100:CDS 25.0%
! AATTAGAAGCAACTTTATGT+GGG - tig0026950:32307-32326 Msa1432100:CDS 25.0%
!!! AAGCTCTTTAGAGTTATAAA+GGG - tig0026950:32371-32390 Msa1432100:intron 25.0%
!! GTAACTTTTAGATGAAATAG+AGG + tig0026950:32738-32757 None:intergenic 25.0%
! ATGAGTTGTTGTTGTTATAG+TGG - tig0026950:26373-26392 Msa1432100:three_prime_UTR 30.0%
! TTGTTGTTGTTATAGTGGAA+TGG - tig0026950:26378-26397 Msa1432100:three_prime_UTR 30.0%
! TTCTGAATGGATTCGTAATT+CGG - tig0026950:26666-26685 Msa1432100:three_prime_UTR 30.0%
ATAATATCTTCATGCTTGGT+TGG - tig0026950:26691-26710 Msa1432100:exon 30.0%
TGTGATCAATATCAATATGC+AGG - tig0026950:26833-26852 Msa1432100:intron 30.0%
!! ATGAAATTCGTGATTTGTTG+TGG - tig0026950:26859-26878 Msa1432100:intron 30.0%
!! TGAAATTCGTGATTTGTTGT+GGG - tig0026950:26860-26879 Msa1432100:intron 30.0%
! CTTTTCCATGTTTCTTGAAT+AGG + tig0026950:26927-26946 None:intergenic 30.0%
CTATTCAAGAAACATGGAAA+AGG - tig0026950:26925-26944 Msa1432100:intron 30.0%
ATTGCAGCTTCTATTACTTT+AGG - tig0026950:27041-27060 Msa1432100:intron 30.0%
TTAGAAGAATCAGAATCAGA+AGG + tig0026950:27263-27282 None:intergenic 30.0%
AATAACAGTGGAAGTAGTAT+TGG + tig0026950:27297-27316 None:intergenic 30.0%
ATACCCAACAATAAATACAG+CGG + tig0026950:27508-27527 None:intergenic 30.0%
TTATTGTTGGGTATCTTATG+TGG - tig0026950:27514-27533 Msa1432100:intron 30.0%
ATATGATGTAGACCAAGATA+GGG + tig0026950:27554-27573 None:intergenic 30.0%
TATATGATGTAGACCAAGAT+AGG + tig0026950:27555-27574 None:intergenic 30.0%
TATATCCTGAAATCCTCTAT+TGG - tig0026950:27671-27690 Msa1432100:intron 30.0%
ATATCCTGAAATCCTCTATT+GGG - tig0026950:27672-27691 Msa1432100:intron 30.0%
! ATCGTGTTTTTCTTCTCTTT+GGG - tig0026950:28022-28041 Msa1432100:intron 30.0%
ATTGTGAACACTGCAAATAT+AGG + tig0026950:28118-28137 None:intergenic 30.0%
CATAAGATAACTGAAGAGAA+AGG + tig0026950:28206-28225 None:intergenic 30.0%
! TGGCATTTTATCTTAGTTGA+AGG - tig0026950:28310-28329 Msa1432100:intron 30.0%
TTTAAATATATGCCAGTGCT+TGG + tig0026950:28403-28422 None:intergenic 30.0%
TTCCTTGTGTAATTAGGATT+TGG + tig0026950:28442-28461 None:intergenic 30.0%
!!! GTCTAAGATATTTTGAGATG+GGG - tig0026950:28497-28516 Msa1432100:intron 30.0%
! CTATGAATTCAGAATGGATT+AGG - tig0026950:28643-28662 Msa1432100:CDS 30.0%
ACTGGCAAAACAAACTAAAA+CGG - tig0026950:28723-28742 Msa1432100:CDS 30.0%
TGAAACAAATAAGAAAAGGG+AGG - tig0026950:28861-28880 Msa1432100:intron 30.0%
GAAACAAATAAGAAAAGGGA+GGG - tig0026950:28862-28881 Msa1432100:intron 30.0%
TTCCATGATAAAGAAAAAGG+AGG - tig0026950:28903-28922 Msa1432100:intron 30.0%
TCCATGATAAAGAAAAAGGA+GGG - tig0026950:28904-28923 Msa1432100:intron 30.0%
! TATTACAGACATGTTAGTCT+TGG + tig0026950:28975-28994 None:intergenic 30.0%
!!! ATTTGTTTTGAACTCTGAAC+TGG + tig0026950:29070-29089 None:intergenic 30.0%
CTTGAAAAAAGACCTAGAAA+GGG - tig0026950:29200-29219 Msa1432100:intron 30.0%
! TTTGTCTTTTGCAAATGTTC+AGG - tig0026950:29255-29274 Msa1432100:intron 30.0%
!! CAAGAAGATATTTCTGGAAA+CGG + tig0026950:29534-29553 None:intergenic 30.0%
GATCTACAAGAAGATATTTC+TGG + tig0026950:29540-29559 None:intergenic 30.0%
AGATCAATTGAGTTATCTAC+TGG - tig0026950:29555-29574 Msa1432100:CDS 30.0%
TTTGAGTAAATCATGTCAAG+TGG - tig0026950:29605-29624 Msa1432100:CDS 30.0%
! TGTAAGGAGAACATTAGTTT+CGG - tig0026950:29674-29693 Msa1432100:CDS 30.0%
GATACTGATGATACTTTGAT+TGG - tig0026950:29798-29817 Msa1432100:CDS 30.0%
!! TTGATTGGTTTATTGACACT+TGG - tig0026950:29813-29832 Msa1432100:CDS 30.0%
TAAATTTATGCCACTACTTG+TGG - tig0026950:29977-29996 Msa1432100:intron 30.0%
!! AAATTTAACCTGGCATTGAT+TGG - tig0026950:30061-30080 Msa1432100:CDS 30.0%
CACAATAAAGTGGTTTAACT+TGG + tig0026950:30314-30333 None:intergenic 30.0%
CAAGTTAAACCACTTTATTG+TGG - tig0026950:30312-30331 Msa1432100:intron 30.0%
TATGTAAAGCCACAATAAAG+TGG + tig0026950:30324-30343 None:intergenic 30.0%
GCTTTACATATCTGACTATT+TGG - tig0026950:30334-30353 Msa1432100:intron 30.0%
AAACTAAAATCTCCTGTAAG+AGG + tig0026950:30365-30384 None:intergenic 30.0%
TCATAGATATTCTTCACAAC+TGG + tig0026950:30501-30520 None:intergenic 30.0%
TATGTTAAACTGATACTGTC+GGG + tig0026950:30552-30571 None:intergenic 30.0%
GTATGTTAAACTGATACTGT+CGG + tig0026950:30553-30572 None:intergenic 30.0%
ACAGTATCAGTTTAACATAC+AGG - tig0026950:30553-30572 Msa1432100:intron 30.0%
! TAAAATTGGTTTAGTGATCC+AGG - tig0026950:30630-30649 Msa1432100:intron 30.0%
GTGTAAAACACAACAGAATA+AGG - tig0026950:30782-30801 Msa1432100:intron 30.0%
GGATGCAAATTCCATAATAA+AGG - tig0026950:30853-30872 Msa1432100:intron 30.0%
!! ACTAAAATGGTGGATCTTAA+AGG - tig0026950:30880-30899 Msa1432100:intron 30.0%
TGGATCTTAAAGGAAAATCT+AGG - tig0026950:30890-30909 Msa1432100:intron 30.0%
!!! GTTTGACCATTTTTTGGTTT+TGG - tig0026950:31011-31030 Msa1432100:intron 30.0%
! ACCAAACAAAAAAAAGTGCA+GGG + tig0026950:31962-31981 None:intergenic 30.0%
! AACCAAACAAAAAAAAGTGC+AGG + tig0026950:31961-31980 None:intergenic 30.0%
!!! CAAATTTTTTCCAAAGTGCA+GGG + tig0026950:31067-31086 None:intergenic 30.0%
!!! ACAAATTTTTTCCAAAGTGC+AGG + tig0026950:31068-31087 None:intergenic 30.0%
TTTAACAGTCAACTAACAGA+GGG + tig0026950:31902-31921 None:intergenic 30.0%
! TTTTAACAGTCAACTAACAG+AGG + tig0026950:31901-31920 None:intergenic 30.0%
GATATCAAACACGAAAGAAA+AGG - tig0026950:31283-31302 Msa1432100:CDS 30.0%
TATCAAACACGAAAGAAAAG+GGG - tig0026950:31285-31304 Msa1432100:CDS 30.0%
AAACAATTGAACTTGCAGAA+AGG - tig0026950:31310-31329 Msa1432100:CDS 30.0%
AACAATTGAACTTGCAGAAA+GGG - tig0026950:31311-31330 Msa1432100:CDS 30.0%
ATTGAAAATCGAACAAGAAC+AGG + tig0026950:31374-31393 None:intergenic 30.0%
!! TAATTGATTTTGCAGAAACG+CGG + tig0026950:31575-31594 None:intergenic 30.0%
ACGATTAATCCGTCATTATA+AGG - tig0026950:31712-31731 Msa1432100:intron 30.0%
! TTTTAACAGTCAACTAACAG+AGG - tig0026950:31901-31920 Msa1432100:CDS 30.0%
TTTAACAGTCAACTAACAGA+GGG - tig0026950:31902-31921 Msa1432100:CDS 30.0%
! AACCAAACAAAAAAAAGTGC+AGG - tig0026950:31961-31980 Msa1432100:CDS 30.0%
! ACCAAACAAAAAAAAGTGCA+GGG - tig0026950:31962-31981 Msa1432100:CDS 30.0%
!!! GTTTGACCATTTTTTGGTTT+TGG + tig0026950:31011-31030 None:intergenic 30.0%
!! CAAGCTCTTTAGAGTTATAA+AGG - tig0026950:32370-32389 Msa1432100:intron 30.0%
!!! TCGATGCTTTTTTGTTTGTA+TGG - tig0026950:32410-32429 Msa1432100:intron 30.0%
! TTGTTGTTATAGTGGAATGG+CGG - tig0026950:26381-26400 Msa1432100:three_prime_UTR 35.0%
! TGATGATAATGCCAACTACT+TGG + tig0026950:26472-26491 None:intergenic 35.0%
TGCAATAACAGTAACACGTT+CGG - tig0026950:26507-26526 Msa1432100:three_prime_UTR 35.0%
TGTTTGAGGAAGAAGAAGAA+AGG + tig0026950:26537-26556 None:intergenic 35.0%
ACCATTAGTAGTTGTGAAGT+TGG + tig0026950:26569-26588 None:intergenic 35.0%
ACTTCACAACTACTAATGGT+CGG - tig0026950:26569-26588 Msa1432100:three_prime_UTR 35.0%
!! CTATCTTTGCTATTGTGAAG+CGG + tig0026950:26607-26626 None:intergenic 35.0%
CACAATAGCAAAGATAGAGA+AGG - tig0026950:26610-26629 Msa1432100:three_prime_UTR 35.0%
! TCTGAATGGATTCGTAATTC+GGG - tig0026950:26667-26686 Msa1432100:three_prime_UTR 35.0%
GGGAATAATATCTTCATGCT+TGG - tig0026950:26687-26706 Msa1432100:exon 35.0%
GCGGGAATTGAAATTGAAAT+TGG + tig0026950:27006-27025 None:intergenic 35.0%
! CTGCAATAGCCTTTAAGAAA+GGG + tig0026950:27028-27047 None:intergenic 35.0%
TTGGAAATTCCATTGCCAAA+TGG - tig0026950:27105-27124 Msa1432100:intron 35.0%
!! AGTGGAAGTAGTATTGGTAA+GGG + tig0026950:27291-27310 None:intergenic 35.0%
TACCCAACAATAAATACAGC+GGG + tig0026950:27507-27526 None:intergenic 35.0%
! AGTATAGGGAAAGAAGCTTT+TGG + tig0026950:27619-27638 None:intergenic 35.0%
AAAAGCTTCTTTCCCTATAC+TGG - tig0026950:27618-27637 Msa1432100:intron 35.0%
AAAGCTTCTTTCCCTATACT+GGG - tig0026950:27619-27638 Msa1432100:intron 35.0%
TATCCTGAAATCCTCTATTG+GGG - tig0026950:27673-27692 Msa1432100:intron 35.0%
TCTATTGCTTCAGCTAATAG+CGG - tig0026950:27756-27775 Msa1432100:intron 35.0%
ATAATAGCCTCCTACTAATC+CGG + tig0026950:27815-27834 None:intergenic 35.0%
CAAAGAGAAGAAAAACACGA+TGG + tig0026950:28023-28042 None:intergenic 35.0%
! CATCGTGTTTTTCTTCTCTT+TGG - tig0026950:28021-28040 Msa1432100:intron 35.0%
! TCGTGTTTTTCTTCTCTTTG+GGG - tig0026950:28023-28042 Msa1432100:intron 35.0%
!! TCTTTCTAAGATCACTTCCT+TGG - tig0026950:28062-28081 Msa1432100:intron 35.0%
AAGGCTCATTTGTATATCCA+AGG + tig0026950:28082-28101 None:intergenic 35.0%
! TATACAAATGAGCCTTTTCC+TGG - tig0026950:28086-28105 Msa1432100:intron 35.0%
AAATTTAGACAAGCGCCATA+AGG - tig0026950:28160-28179 Msa1432100:intron 35.0%
AGCTTCTCATGCATATAACT+TGG - tig0026950:28290-28309 Msa1432100:intron 35.0%
AAGGTTTACTCTCTATTGCT+TGG - tig0026950:28329-28348 Msa1432100:intron 35.0%
AGGTTTACTCTCTATTGCTT+GGG - tig0026950:28330-28349 Msa1432100:intron 35.0%
TGATACAAAAAACCAAGCAC+TGG - tig0026950:28388-28407 Msa1432100:intron 35.0%
CTCCAAATCCTAATTACACA+AGG - tig0026950:28437-28456 Msa1432100:intron 35.0%
!!! CTTGGTTTTGACATTTTGCT+CGG + tig0026950:28804-28823 None:intergenic 35.0%
AGCAAAATGTCAAAACCAAG+AGG - tig0026950:28804-28823 Msa1432100:CDS 35.0%
! ACCCTCCTTTTTCTTTATCA+TGG + tig0026950:28908-28927 None:intergenic 35.0%
! TAACCTTGATAGTATCTTCC+AGG - tig0026950:28929-28948 Msa1432100:intron 35.0%
!! TGTTAGTCTTGGTTAGTGTA+TGG + tig0026950:28964-28983 None:intergenic 35.0%
TATCATGTGGGACTAGATTA+TGG - tig0026950:29026-29045 Msa1432100:intron 35.0%
CTATTTAATGTTGCAGCGTA+TGG - tig0026950:29106-29125 Msa1432100:intron 35.0%
!! CTGCTACACTTTGATTTGTT+GGG - tig0026950:29146-29165 Msa1432100:intron 35.0%
GCTTGAAAAAAGACCTAGAA+AGG - tig0026950:29199-29218 Msa1432100:intron 35.0%
AAATGTTCAGGAAAAGAAGC+TGG - tig0026950:29267-29286 Msa1432100:intron 35.0%
! CATATCAAAGTTCCTTTTGC+AGG - tig0026950:29305-29324 Msa1432100:intron 35.0%
TTGAATTGACACAGGACTAT+CGG - tig0026950:29391-29410 Msa1432100:CDS 35.0%
CATGAAGACAAGATTTGTGA+CGG - tig0026950:29701-29720 Msa1432100:CDS 35.0%
!! ATATAGTTTTGCAACCTTCG+TGG - tig0026950:29927-29946 Msa1432100:intron 35.0%
TATCTATCAACCACAAGTAG+TGG + tig0026950:29990-30009 None:intergenic 35.0%
ACGATACTGCAAATTTAACC+TGG - tig0026950:30051-30070 Msa1432100:CDS 35.0%
ATGTATGCATGAAATCCACA+AGG + tig0026950:30188-30207 None:intergenic 35.0%
GGATTTCATGCATACATGTT+TGG - tig0026950:30191-30210 Msa1432100:intron 35.0%
GAGCTGAATTGAGAAATTAG+TGG + tig0026950:30217-30236 None:intergenic 35.0%
!! TATTTGGTTCTTCCTCTTAC+AGG - tig0026950:30350-30369 Msa1432100:intron 35.0%
ATATCAGGAGTAACTGTACA+TGG + tig0026950:30426-30445 None:intergenic 35.0%
ATGTACAGTTACTCCTGATA+TGG - tig0026950:30425-30444 Msa1432100:intron 35.0%
GCATGATAAAGTTCCATATC+AGG + tig0026950:30441-30460 None:intergenic 35.0%
TCATGCTCAAATGATCATGA+AGG - tig0026950:30455-30474 Msa1432100:intron 35.0%
CAAATGATCATGAAGGAACA+TGG - tig0026950:30462-30481 Msa1432100:intron 35.0%
ATGTTAAACTGATACTGTCG+GGG + tig0026950:30551-30570 None:intergenic 35.0%
! TTCGATTCGAGTCTTGAATT+CGG - tig0026950:30813-30832 Msa1432100:intron 35.0%
AGGAAATATGAAGAGCAAAC+GGG + tig0026950:30916-30935 None:intergenic 35.0%
CAGGAAATATGAAGAGCAAA+CGG + tig0026950:30917-30936 None:intergenic 35.0%
CAAAAAATGGTCAAACTGCA+AGG + tig0026950:31993-32012 None:intergenic 35.0%
!!! CTTGCAGTTTGACCATTTTT+TGG - tig0026950:31005-31024 Msa1432100:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - tig0026950:31034-31053 Msa1432100:intron 35.0%
ACAATTGAACTTGCAGAAAG+GGG - tig0026950:31312-31331 Msa1432100:CDS 35.0%
!! CAAGAACAGGTTGGATTTTT+GGG + tig0026950:31361-31380 None:intergenic 35.0%
!! ACAAGAACAGGTTGGATTTT+TGG + tig0026950:31362-31381 None:intergenic 35.0%
AAAATCGAACAAGAACAGGT+TGG + tig0026950:31370-31389 None:intergenic 35.0%
GGTGAACAACAACTCAAAAT+GGG + tig0026950:31473-31492 None:intergenic 35.0%
TGGTGAACAACAACTCAAAA+TGG + tig0026950:31474-31493 None:intergenic 35.0%
AGTGAAACGTAGCTTAAGTT+GGG + tig0026950:31606-31625 None:intergenic 35.0%
!! GGTATTGCTATTGAGGATTT+TGG - tig0026950:31685-31704 Msa1432100:CDS 35.0%
!! ATAATGACGGATTAATCGTG+AGG + tig0026950:31711-31730 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + tig0026950:31034-31053 None:intergenic 35.0%
!!! CTTGCAGTTTGACCATTTTT+TGG + tig0026950:31005-31024 None:intergenic 35.0%
CAAAAAATGGTCAAACTGCA+AGG - tig0026950:31993-32012 Msa1432100:CDS 35.0%
CAATTGTGATAGAGAGAAGA+TGG + tig0026950:32139-32158 None:intergenic 35.0%
!! AAGTAAACGGTGTCATTAGA+TGG - tig0026950:32250-32269 Msa1432100:CDS 35.0%
!! AGTAAACGGTGTCATTAGAT+GGG - tig0026950:32251-32270 Msa1432100:CDS 35.0%
CAACTTTATGTGGGAAAGAA+TGG - tig0026950:32316-32335 Msa1432100:CDS 35.0%
AAAGAATGGTGTAAGAAGAG+TGG - tig0026950:32330-32349 Msa1432100:CDS 35.0%
TAACTTGGAACATCAGCTAA+GGG + tig0026950:32494-32513 None:intergenic 35.0%
GGTTAAACTTGACGTGTTAA+AGG + tig0026950:32564-32583 None:intergenic 35.0%
! AACCATGCCATTTAATTCTG+TGG - tig0026950:32580-32599 Msa1432100:CDS 35.0%
ACAACCACCACAGAATTAAA+TGG + tig0026950:32590-32609 None:intergenic 35.0%
TTTGCTGCTGAGTATTCTTA+CGG + tig0026950:32652-32671 None:intergenic 35.0%
CACATGTACCTATTACTAGT+GGG - tig0026950:32840-32859 Msa1432100:five_prime_UTR 35.0%
AACATACTCCCACTAGTAAT+AGG + tig0026950:32851-32870 None:intergenic 35.0%
! TGTTGTTATAGTGGAATGGC+GGG - tig0026950:26382-26401 Msa1432100:three_prime_UTR 40.0%
GGGGAAGAAGATGGAATAAT+GGG - tig0026950:26403-26422 Msa1432100:three_prime_UTR 40.0%
! GAAGAAGATGGAATAATGGG+TGG - tig0026950:26406-26425 Msa1432100:three_prime_UTR 40.0%
GAGTTCTTCAACCAAGTAGT+TGG - tig0026950:26458-26477 Msa1432100:three_prime_UTR 40.0%
GCAATAACAGTAACACGTTC+GGG - tig0026950:26508-26527 Msa1432100:three_prime_UTR 40.0%
! GTTGGCGTAATTCTTGTTTG+AGG + tig0026950:26551-26570 None:intergenic 40.0%
GCCAACTTCACAACTACTAA+TGG - tig0026950:26565-26584 Msa1432100:three_prime_UTR 40.0%
AGATAGAGAAGGAGAAGTTG+AGG - tig0026950:26621-26640 Msa1432100:three_prime_UTR 40.0%
CGTCTTCTTCTTCTTCTGAA+TGG - tig0026950:26653-26672 Msa1432100:three_prime_UTR 40.0%
!! ATTCGTGATTTGTTGTGGGA+TGG - tig0026950:26864-26883 Msa1432100:intron 40.0%
!! TTCGTGATTTGTTGTGGGAT+GGG - tig0026950:26865-26884 Msa1432100:intron 40.0%
AAGCGCCTATTCAAGAAACA+TGG - tig0026950:26919-26938 Msa1432100:intron 40.0%
! GTAATACTTGTTCCCGCTTT+TGG - tig0026950:26948-26967 Msa1432100:intron 40.0%
AACAAGAAGACCTCCAAAAG+CGG + tig0026950:26964-26983 None:intergenic 40.0%
! AATAGCCTTTAAGAAAGGGC+GGG + tig0026950:27024-27043 None:intergenic 40.0%
! CAATAGCCTTTAAGAAAGGG+CGG + tig0026950:27025-27044 None:intergenic 40.0%
! GCTGCAATAGCCTTTAAGAA+AGG + tig0026950:27029-27048 None:intergenic 40.0%
GCTTCTATTACTTTAGGCAC+TGG - tig0026950:27047-27066 Msa1432100:intron 40.0%
!! TTTAGGCACTGGTAATTCCT+TGG - tig0026950:27058-27077 Msa1432100:intron 40.0%
!! TTAGGCACTGGTAATTCCTT+GGG - tig0026950:27059-27078 Msa1432100:intron 40.0%
!! CAGTGGAAGTAGTATTGGTA+AGG + tig0026950:27292-27311 None:intergenic 40.0%
GACAGCACTTAGAATAACAG+TGG + tig0026950:27309-27328 None:intergenic 40.0%
!! GCTTCTGTCATTTCTGAGAT+TGG - tig0026950:27332-27351 Msa1432100:intron 40.0%
CTCCCGCTGTATTTATTGTT+GGG - tig0026950:27502-27521 Msa1432100:intron 40.0%
AAGATAGGGTCAATGAAACG+AGG + tig0026950:27540-27559 None:intergenic 40.0%
TCGTTTCATTGACCCTATCT+TGG - tig0026950:27539-27558 Msa1432100:intron 40.0%
CAGATAAACCTCCCAGTATA+GGG + tig0026950:27633-27652 None:intergenic 40.0%
ACAGATAAACCTCCCAGTAT+AGG + tig0026950:27634-27653 None:intergenic 40.0%
ATACTGGGAGGTTTATCTGT+AGG - tig0026950:27634-27653 Msa1432100:intron 40.0%
CAGGATATAGCAATGCTATG+AGG + tig0026950:27660-27679 None:intergenic 40.0%
AAACCCCAATAGAGGATTTC+AGG + tig0026950:27679-27698 None:intergenic 40.0%
CATTCTCAAAACCCCAATAG+AGG + tig0026950:27687-27706 None:intergenic 40.0%
TATGCCCCATCTCTCTTTAT+TGG - tig0026950:27832-27851 Msa1432100:intron 40.0%
ACCACCAATAAAGAGAGATG+GGG + tig0026950:27839-27858 None:intergenic 40.0%
CACCACCAATAAAGAGAGAT+GGG + tig0026950:27840-27859 None:intergenic 40.0%
AACAGAGAGAGGTTAATCAC+AGG + tig0026950:27916-27935 None:intergenic 40.0%
TGTGATTAACCTCTCTCTGT+TGG - tig0026950:27915-27934 Msa1432100:intron 40.0%
TTGCATCACCACAAGCTTAT+GGG - tig0026950:27941-27960 Msa1432100:intron 40.0%
!! TGTTTTTCTTCTCTTTGGGG+TGG - tig0026950:28026-28045 Msa1432100:intron 40.0%
!!! GTTTTTCTTCTCTTTGGGGT+GGG - tig0026950:28027-28046 Msa1432100:intron 40.0%
TATAGGAATCCTCCAGGAAA+AGG + tig0026950:28101-28120 None:intergenic 40.0%
TGCAAATATAGGAATCCTCC+AGG + tig0026950:28107-28126 None:intergenic 40.0%
!! GTATCAAGTTTTATCGTGGG+TGG + tig0026950:28613-28632 None:intergenic 40.0%
!!! AGCACTAGTTTTGTCTCAGT+TGG + tig0026950:28677-28696 None:intergenic 40.0%
TACATCAGCCAAAGCTTAAC+TGG - tig0026950:28761-28780 Msa1432100:CDS 40.0%
! GCTTTAAACTTCTGTCCTCT+TGG + tig0026950:28822-28841 None:intergenic 40.0%
TATCATGGAAGATGCTCTCA+AGG + tig0026950:28893-28912 None:intergenic 40.0%
CATCCTGGAAGATACTATCA+AGG + tig0026950:28935-28954 None:intergenic 40.0%
AGTGTATGGTTTCTTCATCC+TGG + tig0026950:28950-28969 None:intergenic 40.0%
!! GCTGCTACACTTTGATTTGT+TGG - tig0026950:29145-29164 Msa1432100:intron 40.0%
TTCAGTCTCTAACCCTTTCT+AGG + tig0026950:29215-29234 None:intergenic 40.0%
! TCAAAGTTCCTTTTGCAGGT+TGG - tig0026950:29309-29328 Msa1432100:intron 40.0%
GCTTCTGTTTGAATTGACAC+AGG - tig0026950:29383-29402 Msa1432100:CDS 40.0%
!! CGGATTGTTTTACCACTACT+TGG - tig0026950:29411-29430 Msa1432100:CDS 40.0%
TCATCTGTACAGACAAAGAG+AGG - tig0026950:29459-29478 Msa1432100:CDS 40.0%
AGACAAAGAGAGGTGATGAA+AGG - tig0026950:29469-29488 Msa1432100:CDS 40.0%
GACAAAGAGAGGTGATGAAA+GGG - tig0026950:29470-29489 Msa1432100:CDS 40.0%
CGTCACAAATCTTGTCTTCA+TGG + tig0026950:29703-29722 None:intergenic 40.0%
CATTCGAGCGTTTGGAAAAT+CGG - tig0026950:29839-29858 Msa1432100:CDS 40.0%
TTTGGAAAATCGGCAAAGTC+TGG - tig0026950:29849-29868 Msa1432100:CDS 40.0%
AATATTCTAGGTTGCCACGA+AGG + tig0026950:29944-29963 None:intergenic 40.0%
TTTGCAGTATCGTCAGAACT+AGG + tig0026950:30044-30063 None:intergenic 40.0%
AGCACAAGCACACACTTAAA+AGG - tig0026950:30161-30180 Msa1432100:intron 40.0%
GCACAAGCACACACTTAAAA+GGG - tig0026950:30162-30181 Msa1432100:intron 40.0%
! AACTTATCCAATTGGCCTAC+TGG - tig0026950:30524-30543 Msa1432100:intron 40.0%
TCGGAGAAAGACATATTTCC+TGG + tig0026950:30651-30670 None:intergenic 40.0%
CTGAACTAAGCTTCATGACA+TGG - tig0026950:30747-30766 Msa1432100:intron 40.0%
CTAAGCTTCATGACATGGAA+TGG - tig0026950:30752-30771 Msa1432100:intron 40.0%
CATGACATGGAATGGAACAA+AGG - tig0026950:30760-30779 Msa1432100:intron 40.0%
CAGGGACCAAAACCAAAAAA+TGG + tig0026950:31980-31999 None:intergenic 40.0%
!!! TTTGTTTTTAGTGTGCCACG+TGG + tig0026950:31168-31187 None:intergenic 40.0%
! AAAGGGGAAGAAGTGGATTT+AGG - tig0026950:31328-31347 Msa1432100:CDS 40.0%
! AAGGGGAAGAAGTGGATTTA+GGG - tig0026950:31329-31348 Msa1432100:CDS 40.0%
AAAATGGGCAGAAACAACGA+AGG + tig0026950:31458-31477 None:intergenic 40.0%
TTCCGTTCATCAGTTTGACT+TGG - tig0026950:31530-31549 Msa1432100:CDS 40.0%
TGCCAAGTCAAACTGATGAA+CGG + tig0026950:31535-31554 None:intergenic 40.0%
CAGTGAAACGTAGCTTAAGT+TGG + tig0026950:31607-31626 None:intergenic 40.0%
! CGTTTGTGGTATTGCTATTG+AGG - tig0026950:31678-31697 Msa1432100:CDS 40.0%
!!! TTGTTTTTTAGTGTGCCACG+TGG - tig0026950:31833-31852 Msa1432100:CDS 40.0%
! TGGTTTAAGTCCCTGCATTT+TGG + tig0026950:31946-31965 None:intergenic 40.0%
CAGGGACCAAAACCAAAAAA+TGG - tig0026950:31980-31999 Msa1432100:CDS 40.0%
GTGATAGAGAGAAGATGGAA+GGG + tig0026950:32134-32153 None:intergenic 40.0%
TGTGATAGAGAGAAGATGGA+AGG + tig0026950:32135-32154 None:intergenic 40.0%
!! GTAAACGGTGTCATTAGATG+GGG - tig0026950:32252-32271 Msa1432100:CDS 40.0%
AATGGTGTAAGAAGAGTGGA+GGG - tig0026950:32334-32353 Msa1432100:intron 40.0%
TGTTGTTGAATGCAGTGCTT+TGG - tig0026950:32456-32475 Msa1432100:CDS 40.0%
CTAACTTGGAACATCAGCTA+AGG + tig0026950:32495-32514 None:intergenic 40.0%
CTTAGCTGATGTTCCAAGTT+AGG - tig0026950:32493-32512 Msa1432100:CDS 40.0%
CACCACAGAATTAAATGGCA+TGG + tig0026950:32585-32604 None:intergenic 40.0%
! CATGCCATTTAATTCTGTGG+TGG - tig0026950:32583-32602 Msa1432100:CDS 40.0%
TGATGTAAGACAGAGAACGA+TGG - tig0026950:32681-32700 Msa1432100:CDS 40.0%
! CACTTGAGTGACTTTGAGTT+TGG + tig0026950:32760-32779 None:intergenic 40.0%
CAAACTCAAAGTCACTCAAG+TGG - tig0026950:32758-32777 Msa1432100:CDS 40.0%
GCACTCAAAAGATGGAACAT+GGG + tig0026950:32786-32805 None:intergenic 40.0%
CCACTAGTAATAGGTACATG+TGG + tig0026950:32842-32861 None:intergenic 40.0%
CCACATGTACCTATTACTAG+TGG - tig0026950:32839-32858 Msa1432100:five_prime_UTR 40.0%
GGAGTATGTTGCAATGCAAT+GGG - tig0026950:32861-32880 Msa1432100:five_prime_UTR 40.0%
GAGTATGTTGCAATGCAATG+GGG - tig0026950:32862-32881 Msa1432100:five_prime_UTR 40.0%
! GTTGTTATAGTGGAATGGCG+GGG - tig0026950:26383-26402 Msa1432100:three_prime_UTR 45.0%
! TTGTTATAGTGGAATGGCGG+GGG - tig0026950:26384-26403 Msa1432100:three_prime_UTR 45.0%
GGGGGAAGAAGATGGAATAA+TGG - tig0026950:26402-26421 Msa1432100:three_prime_UTR 45.0%
!! GATGGAATAATGGGTGGCTT+AGG - tig0026950:26412-26431 Msa1432100:three_prime_UTR 45.0%
AGAGAAGGAGAAGTTGAGGA+AGG - tig0026950:26625-26644 Msa1432100:three_prime_UTR 45.0%
!! TGCTTGGTTGGTCTCTTAAC+AGG - tig0026950:26703-26722 Msa1432100:exon 45.0%
! TTTGTTGTGGGATGGGATTC+CGG - tig0026950:26872-26891 Msa1432100:intron 45.0%
!! ATACTTGTTCCCGCTTTTGG+AGG - tig0026950:26951-26970 Msa1432100:intron 45.0%
ACAAGAAGACCTCCAAAAGC+GGG + tig0026950:26963-26982 None:intergenic 45.0%
CAATTCCCGCCCTTTCTTAA+AGG - tig0026950:27016-27035 Msa1432100:intron 45.0%
GAATTTCCAATGTCGACGCT+GGG + tig0026950:27095-27114 None:intergenic 45.0%
GGAAGCAATCCATTTGGCAA+TGG + tig0026950:27117-27136 None:intergenic 45.0%
AGGAGTGGAAGCAATCCATT+TGG + tig0026950:27123-27142 None:intergenic 45.0%
AGTTTGGCGGAAGTGAAAAG+AGG + tig0026950:27143-27162 None:intergenic 45.0%
AGCGAAGAAACAACCAGCAA+CGG + tig0026950:27222-27241 None:intergenic 45.0%
!! GTCATTTCTGAGATTGGCCT+CGG - tig0026950:27338-27357 Msa1432100:intron 45.0%
! TAGTCTGGAACTTGAAAGGC+AGG + tig0026950:27371-27390 None:intergenic 45.0%
! GTCGTAGTCTGGAACTTGAA+AGG + tig0026950:27375-27394 None:intergenic 45.0%
TCGGTAAGTTACTTACCAGC+AGG + tig0026950:27407-27426 None:intergenic 45.0%
GCTCCCGCTGTATTTATTGT+TGG - tig0026950:27501-27520 Msa1432100:intron 45.0%
GAATCTCGACCCTTTGTCAA+AGG - tig0026950:27721-27740 Msa1432100:intron 45.0%
GTGGAGAGACCTTTGACAAA+GGG + tig0026950:27733-27752 None:intergenic 45.0%
CTTTGTCAAAGGTCTCTCCA+CGG - tig0026950:27732-27751 Msa1432100:intron 45.0%
TAGCTGAAGCAATAGATCCG+TGG + tig0026950:27752-27771 None:intergenic 45.0%
GCACCACCAATAAAGAGAGA+TGG + tig0026950:27841-27860 None:intergenic 45.0%
!! CTCTTTATTGGTGGTGCAAC+TGG - tig0026950:27844-27863 Msa1432100:intron 45.0%
!! TATTGGTGGTGCAACTGGTA+TGG - tig0026950:27849-27868 Msa1432100:intron 45.0%
ATGCAACTTCCAACAGAGAG+AGG + tig0026950:27927-27946 None:intergenic 45.0%
GTTGCATCACCACAAGCTTA+TGG - tig0026950:27940-27959 Msa1432100:intron 45.0%
! ACAAATGAGCCTTTTCCTGG+AGG - tig0026950:28089-28108 Msa1432100:intron 45.0%
TTGCCAGTTGTCGTGAAAGT+CGG + tig0026950:28711-28730 None:intergenic 45.0%
TCAGCCAAAGCTTAACTGGA+AGG - tig0026950:28765-28784 Msa1432100:CDS 45.0%
GACACCTTCCAGTTAAGCTT+TGG + tig0026950:28772-28791 None:intergenic 45.0%
TATGGTCCAAGCAACTTCCT+TGG - tig0026950:29044-29063 Msa1432100:intron 45.0%
TTTGAACTCTGAACTGGCCA+AGG + tig0026950:29064-29083 None:intergenic 45.0%
!! GTTCCTTTTGCAGGTTGGAA+TGG - tig0026950:29314-29333 Msa1432100:intron 45.0%
GAACTGCAGTAAGTGGTACT+TGG + tig0026950:29362-29381 None:intergenic 45.0%
AGAAGCAGAACTGCAGTAAG+TGG + tig0026950:29369-29388 None:intergenic 45.0%
TTACCACTACTTGGAGCAGT+AGG - tig0026950:29420-29439 Msa1432100:CDS 45.0%
ACTGGTAATACCTCTGCTGA+AGG - tig0026950:29573-29592 Msa1432100:CDS 45.0%
ATATGACACACCTTCAGCAG+AGG + tig0026950:29586-29605 None:intergenic 45.0%
GGAGAGTTCAAGTAGTGTAG+AGG - tig0026950:29626-29645 Msa1432100:CDS 45.0%
GTCTGGAAGCGAAAATCGAA+AGG - tig0026950:29866-29885 Msa1432100:CDS 45.0%
! GTTGGTTTCCAATCAATGCC+AGG + tig0026950:30072-30091 None:intergenic 45.0%
ACACACTTAAAAGGGCCTTG+TGG - tig0026950:30170-30189 Msa1432100:intron 45.0%
TCGAGTCTTGAATTCGGATG+TGG - tig0026950:30819-30838 Msa1432100:intron 45.0%
! TGAATTCGGATGTGGATTGC+AGG - tig0026950:30827-30846 Msa1432100:intron 45.0%
CACGTGGCACTCTGTTAATT+TGG + tig0026950:31129-31148 None:intergenic 45.0%
! CAAATTAACAGAGTGCCACG+TGG - tig0026950:31127-31146 Msa1432100:intron 45.0%
CATGATATTACTGGACCACG+TGG + tig0026950:31856-31875 None:intergenic 45.0%
TCCAGTAATATCATGCCACG+TGG - tig0026950:31150-31169 Msa1432100:intron 45.0%
!! CGTAGCTTAAGTTGGGTTTG+TGG + tig0026950:31599-31618 None:intergenic 45.0%
TCCAGTAATATCATGCCACG+TGG + tig0026950:31150-31169 None:intergenic 45.0%
CATGATATTACTGGACCACG+TGG - tig0026950:31856-31875 Msa1432100:CDS 45.0%
! AAAATTAACGGAGTGCCACG+TGG + tig0026950:31874-31893 None:intergenic 45.0%
GAATGGTGTAAGAAGAGTGG+AGG - tig0026950:32333-32352 Msa1432100:intron 45.0%
AGCTGATGTTCCAAGTTAGG+AGG - tig0026950:32496-32515 Msa1432100:CDS 45.0%
TGATGTTCCAAGTTAGGAGG+AGG - tig0026950:32499-32518 Msa1432100:CDS 45.0%
GATGTTCCAAGTTAGGAGGA+GGG - tig0026950:32500-32519 Msa1432100:CDS 45.0%
CGTTCTCTGTCTTACATCAG+AGG + tig0026950:32680-32699 None:intergenic 45.0%
CGCACTCAAAAGATGGAACA+TGG + tig0026950:32787-32806 None:intergenic 45.0%
TCACACTCGCACTCAAAAGA+TGG + tig0026950:32794-32813 None:intergenic 45.0%
! GGGAGTATGTTGCAATGCAA+TGG - tig0026950:32860-32879 Msa1432100:five_prime_UTR 45.0%
!!! CTTTTATTTATTTATTTATT+TGG - tig0026950:27977-27996 Msa1432100:intron 5.0%
!! TAAAAAAAAATCAAAATTAA+CGG + tig0026950:31886-31905 None:intergenic 5.0%
!!! ATAAAATTATAATACATTTT+GGG + tig0026950:32898-32917 None:intergenic 5.0%
!!! TATAAAATTATAATACATTT+TGG + tig0026950:32899-32918 None:intergenic 5.0%
AATGGGTGGCTTAGGATGTG+CGG - tig0026950:26420-26439 Msa1432100:three_prime_UTR 50.0%
TTAGGATGTGCGGTTGGAGT+CGG - tig0026950:26430-26449 Msa1432100:three_prime_UTR 50.0%
! AACCATGAGGCACCTCTATC+CGG + tig0026950:26894-26913 None:intergenic 50.0%
TGGTAATTCCTTGGGTCCTG+AGG - tig0026950:27067-27086 Msa1432100:intron 50.0%
GGTAATTCCTTGGGTCCTGA+GGG - tig0026950:27068-27087 Msa1432100:intron 50.0%
GGAATTTCCAATGTCGACGC+TGG + tig0026950:27096-27115 None:intergenic 50.0%
ATTGAAACCAGCAGAGAGGC+CGG + tig0026950:27195-27214 None:intergenic 50.0%
! CAGCATTGAAACCAGCAGAG+AGG + tig0026950:27199-27218 None:intergenic 50.0%
TCGCTGTTGAGTCTGTCTTG+TGG - tig0026950:27237-27256 Msa1432100:intron 50.0%
GGAGAACGAAAGTCGTAGTC+TGG + tig0026950:27386-27405 None:intergenic 50.0%
TACGACTTTCGTTCTCCTGC+TGG - tig0026950:27389-27408 Msa1432100:intron 50.0%
GACAATCTTCACAAGGCCAC+TGG - tig0026950:27589-27608 Msa1432100:intron 50.0%
! AGAAGCTTTTGGCATGCCAG+TGG + tig0026950:27608-27627 None:intergenic 50.0%
GCTTCTTTCCCTATACTGGG+AGG - tig0026950:27622-27641 Msa1432100:intron 50.0%
CGTGGAGAGACCTTTGACAA+AGG + tig0026950:27734-27753 None:intergenic 50.0%
ACTTCTCTCTGTCGTGCTTC+CGG - tig0026950:27793-27812 Msa1432100:intron 50.0%
!! TGTCGTGCTTCCGGATTAGT+AGG - tig0026950:27802-27821 Msa1432100:intron 50.0%
GCCCCATCTCTCTTTATTGG+TGG - tig0026950:27835-27854 Msa1432100:intron 50.0%
GGTGCAACTGGTATGGCTTA+TGG - tig0026950:27856-27875 Msa1432100:intron 50.0%
ATCACCACAAGCTTATGGGC+TGG - tig0026950:27945-27964 Msa1432100:intron 50.0%
! CAACCGACTTTCACGACAAC+TGG - tig0026950:28705-28724 Msa1432100:CDS 50.0%
AACTGGCCAAGGAAGTTGCT+TGG + tig0026950:29053-29072 None:intergenic 50.0%
CAGCGTATGGTTGTCTATGC+TGG - tig0026950:29119-29138 Msa1432100:intron 50.0%
TTCAGGAAAAGAAGCTGGCG+TGG - tig0026950:29272-29291 Msa1432100:intron 50.0%
CAGCCATTCCAACCTGCAAA+AGG + tig0026950:29320-29339 None:intergenic 50.0%
AAGCCTACTGCTCCAAGTAG+TGG + tig0026950:29426-29445 None:intergenic 50.0%
GAGCAGTAGGCTTGTCTTCA+TGG - tig0026950:29433-29452 Msa1432100:CDS 50.0%
CTTGGAGACATTCGAGCGTT+TGG - tig0026950:29831-29850 Msa1432100:CDS 50.0%
TCGCTCATGGCATATCTTGG+TGG - tig0026950:30250-30269 Msa1432100:intron 50.0%
CGCTCATGGCATATCTTGGT+GGG - tig0026950:30251-30270 Msa1432100:intron 50.0%
GCTCATGGCATATCTTGGTG+GGG - tig0026950:30252-30271 Msa1432100:intron 50.0%
TGGTTTAGGTCCCTGCACTT+TGG - tig0026950:31054-31073 Msa1432100:intron 50.0%
GCCACGTGGCATGATATTAC+TGG + tig0026950:31847-31866 None:intergenic 50.0%
CTTGCAGAAAGGGGAAGAAG+TGG - tig0026950:31321-31340 Msa1432100:CDS 50.0%
TCACCATGCTGCTGCATTTC+TGG - tig0026950:31488-31507 Msa1432100:CDS 50.0%
CACCATGCTGCTGCATTTCT+GGG - tig0026950:31489-31508 Msa1432100:CDS 50.0%
TTCCCAGAAATGCAGCAGCA+TGG + tig0026950:31494-31513 None:intergenic 50.0%
GCCACGTGGCATGATATTAC+TGG - tig0026950:31847-31866 Msa1432100:CDS 50.0%
!! AACGGTGTCATTAGATGGGG+TGG - tig0026950:32255-32274 Msa1432100:CDS 50.0%
!! ACGGTGTCATTAGATGGGGT+GGG - tig0026950:32256-32275 Msa1432100:CDS 50.0%
TCAGCTAAGGGACTGTATCG+TGG + tig0026950:32482-32501 None:intergenic 50.0%
TGGGATGGGATTCCGGATAG+AGG - tig0026950:26879-26898 Msa1432100:intron 55.0%
!! TTCCGGATAGAGGTGCCTCA+TGG - tig0026950:26889-26908 Msa1432100:intron 55.0%
AGGCGCTTCTCTCAACCATG+AGG + tig0026950:26907-26926 None:intergenic 55.0%
GGCGGAAGTGAAAAGAGGAG+TGG + tig0026950:27138-27157 None:intergenic 55.0%
GGTTTCAATGCTGCCGTTGC+TGG - tig0026950:27206-27225 Msa1432100:intron 55.0%
!! CGTGCTTCCGGATTAGTAGG+AGG - tig0026950:27805-27824 Msa1432100:intron 55.0%
CGTACCAGCCCATAAGCTTG+TGG + tig0026950:27952-27971 None:intergenic 55.0%
GAAAAGAAGCTGGCGTGGCA+CGG - tig0026950:29277-29296 Msa1432100:intron 55.0%
TGATACTGTCGGGGTCCAGT+AGG + tig0026950:30542-30561 None:intergenic 55.0%
! TTCGGATGTGGATTGCAGGC+AGG - tig0026950:30831-30850 Msa1432100:intron 55.0%
! TCGGATGTGGATTGCAGGCA+GGG - tig0026950:30832-30851 Msa1432100:intron 55.0%
CCACAAACGCAGAAACGCGA+CGG + tig0026950:31667-31686 None:intergenic 55.0%
! GTGTCATTAGATGGGGTGGG+TGG - tig0026950:32259-32278 Msa1432100:CDS 55.0%
TTCCAAGTTAGGAGGAGGGC+AGG - tig0026950:32504-32523 Msa1432100:CDS 55.0%
TTCCTGCCCTCCTCCTAACT+TGG + tig0026950:32509-32528 None:intergenic 55.0%
AAGTTAGGAGGAGGGCAGGA+AGG - tig0026950:32508-32527 Msa1432100:CDS 55.0%
! GGAATGGCGGGGGAAGAAGA+TGG - tig0026950:26394-26413 Msa1432100:three_prime_UTR 60.0%
GGTGGCTTAGGATGTGCGGT+TGG - tig0026950:26424-26443 Msa1432100:three_prime_UTR 60.0%
TCGGAGGGGAAGGAGTTTGG+CGG + tig0026950:27156-27175 None:intergenic 60.0%
AGCTCGGAGGGGAAGGAGTT+TGG + tig0026950:27159-27178 None:intergenic 60.0%
AGCAGATCCAGCAGCTCGGA+GGG + tig0026950:27171-27190 None:intergenic 60.0%
GAAAGGCAGGTTCAGAGCCG+AGG + tig0026950:27358-27377 None:intergenic 60.0%
GGAATGGCTGCGACTCTTGC+AGG - tig0026950:29330-29349 Msa1432100:CDS 60.0%
TCGGGGTCCAGTAGGCCAAT+TGG + tig0026950:30534-30553 None:intergenic 60.0%
CCGTCGCGTTTCTGCGTTTG+TGG - tig0026950:31664-31683 Msa1432100:CDS 60.0%
ATGTCGACGCTGGGACCCTC+AGG + tig0026950:27086-27105 None:intergenic 65.0%
!! GAGGGTCCCAGCGTCGACAT+TGG - tig0026950:27086-27105 Msa1432100:intron 65.0%
ATCCAGCAGCTCGGAGGGGA+AGG + tig0026950:27166-27185 None:intergenic 65.0%
GCAGATCCAGCAGCTCGGAG+GGG + tig0026950:27170-27189 None:intergenic 65.0%
CAGCAGATCCAGCAGCTCGG+AGG + tig0026950:27172-27191 None:intergenic 65.0%
CGGCAGCAGATCCAGCAGCT+CGG + tig0026950:27175-27194 None:intergenic 65.0%
CGAGCTGCTGGATCTGCTGC+CGG - tig0026950:27173-27192 Msa1432100:intron 65.0%
GCTGGGACCCTCAGGACCCA+AGG + tig0026950:27078-27097 None:intergenic 70.0%
CTCCTTCCCCTCCGAGCTGC+TGG - tig0026950:27161-27180 Msa1432100:intron 70.0%
TCTGCTGCCGGCCTCTCTGC+TGG - tig0026950:27185-27204 Msa1432100:intron 70.0%
Chromosome Type Strat End Strand Name
tig0026950 gene 26250 32955 26250 ID=Msa1432100;Name=Msa1432100
tig0026950 mRNA 26250 32955 26250 ID=Msa1432100-mRNA-1;Parent=Msa1432100;Name=Msa1432100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=123|0.66|0.85|1|0.83|0.85|7|454|782
tig0026950 exon 26250 26734 26250 ID=Msa1432100-mRNA-1:exon:7897;Parent=Msa1432100-mRNA-1
tig0026950 exon 28631 28833 28631 ID=Msa1432100-mRNA-1:exon:7896;Parent=Msa1432100-mRNA-1
tig0026950 exon 29318 29928 29318 ID=Msa1432100-mRNA-1:exon:7895;Parent=Msa1432100-mRNA-1
tig0026950 exon 29984 30083 29984 ID=Msa1432100-mRNA-1:exon:7894;Parent=Msa1432100-mRNA-1
tig0026950 exon 31239 31705 31239 ID=Msa1432100-mRNA-1:exon:7893;Parent=Msa1432100-mRNA-1
tig0026950 exon 31795 32350 31795 ID=Msa1432100-mRNA-1:exon:7892;Parent=Msa1432100-mRNA-1
tig0026950 exon 32452 32955 32452 ID=Msa1432100-mRNA-1:exon:7891;Parent=Msa1432100-mRNA-1
tig0026950 five_prime_UTR 32833 32955 32833 ID=Msa1432100-mRNA-1:five_prime_utr;Parent=Msa1432100-mRNA-1
tig0026950 CDS 32452 32832 32452 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 31795 32350 31795 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 31239 31705 31239 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 29984 30083 29984 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 29318 29928 29318 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 28631 28833 28631 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 CDS 26704 26734 26704 ID=Msa1432100-mRNA-1:cds;Parent=Msa1432100-mRNA-1
tig0026950 three_prime_UTR 26250 26703 26250 ID=Msa1432100-mRNA-1:three_prime_utr;Parent=Msa1432100-mRNA-1
Gene Sequence

>Msa1432100

ATGAGTTGTTGTTGTTATAGTGGAATGGCGGGGGAAGAAGATGGAATAATGGGTGGCTTAGGATGTGCGGTTGGAGTCGGAGTGAGAGTTCTTCAACCAAGTAGTTGGCATTATCATCATCATCATCATCTAGCTGCAATAACAGTAACACGTTCGGGATTCCTTTCTTCTTCTTCCTCAAACAAGAATTACGCCAACTTCACAACTACTAATGGTCGGTGTCGTCGTGTGCCGCTTCACAATAGCAAAGATAGAGAAGGAGAAGTTGAGGAAGGAGTTTCGTCTTCTTCTTCTTCTGAATGGATTCGTAATTCGGGAATAATATCTTCATGCTTGGTTGGTCTCTTAACAGGTGTTGCAGTCGTGCTCTTCAACAATGTTGTTCATGAAATTCGTGATTTGTTGTGGGATGGGATTCCGGATAGAGGTGCCTCATGGTTGAGAGAAGCGCCTATTCAAGAAACATGGAAAAGGGTAATACTTGTTCCCGCTTTTGGAGGTCTTCTTGTTTCTCTTCTCAACCTTCTTTCCAATTTCAATTTCAATTCCCGCCCTTTCTTAAAGGCTATTGCAGCTTCTATTACTTTAGGCACTGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGAAATTCCATTGCCAAATGGATTGCTTCCACTCCTCTTTTCACTTCCGCCAAACTCCTTCCCCTCCGAGCTGCTGGATCTGCTGCCGGCCTCTCTGCTGGTTTCAATGCTGCCGTTGCTGGTTGTTTCTTCGCTGTTGAGTCTGTCTTGTGGCCTTCTGATTCTGATTCTTCTAATTTATCCCTTACCAATACTACTTCCACTGTTATTCTAAGTGCTGTCATTGCTTCTGTCATTTCTGAGATTGGCCTCGGCTCTGAACCTGCCTTTCAAGTTCCAGACTACGACTTTCGTTCTCCTGCTGAGCTCCCGCTGTATTTATTGTTGGGTATCTTATGTGGCCTCGTTTCATTGACCCTATCTTGGTCTACATCATATATGCTCACTTTATTTGACAATCTTCACAAGGCCACTGGCATGCCAAAAGCTTCTTTCCCTATACTGGGAGGTTTATCTGTAGGCCTCATAGCATTGCTATATCCTGAAATCCTCTATTGGGGTTTTGAGAATGTTGACATTTTGTTAGAATCTCGACCCTTTGTCAAAGGTCTCTCCACGGATCTATTGCTTCAGCTAATAGCGGTCAAGATAGTTACAACTTCTCTCTGTCGTGCTTCCGGATTAGTAGGAGGCTATTATGCCCCATCTCTCTTTATTGGTGGTGCAACTGGTATGGCTTATGGAAAATTAATTGCTTTCGCTGTTGCTCACTCTAATCCTGTGATTAACCTCTCTCTGTTGGAAGTTGCATCACCACAAGCTTATGGGCTGCGTATGGTTGTCTATGCTGGAATGCTGCTACACTTTGATTTGTTGGGTCAGAATAAGACTTGTAAGAATATGTTTCAGCTTGAAAAAAGACCTAGAAAGGGAAAAGAAGCTGGCGTGGCACGGATGATCATATCAAAGTTCCTTTTGCAGGTTGGAATGGCTGCGACTCTTGCAGGTGTTTGCCAAGTACCACTTACTGCAGTTCTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTTTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGTACAGACAAAGAGAGGTGATGAAAGGGATAAAGAAAAGCTGAAGATACAAAACTCAAATTCTTCTCCGTTTCCAGAAATATCTTCTTGTAGATCAATTGAGTTATCTACTGGTAATACCTCTGCTGAAGGTGTGTCATATTTGAGTAAATCATGTCAAGTGGAGAGTTCAAGTAGTGTAGAGGATAATAATGATGAAACAATGAATTATGTAAGGAGAACATTAGTTTCGGAAGCCATGAAGACAAGATTTGTGACGGTTTCAATGTGCACACCGCTTACTAAAGTAATAGATCTCATGCTCGCAGAGAAACAGTCTTGTGCAGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACACTTGGAGACATTCGAGCGTTTGGAAAATCGGCAAAGTCTGGAAGCGAAAATCGAAAGGAGATTTTAGTTTCTGAATTATGTGTTTTAAATGGAGGAATATGTAGTGTACCATGTACAGTTACTCCTGATATGGAACTTTATCATGCTCAAATGATCATGAAGGAACATGGAGTGAATCAAGTTCCAGTTGTGAAGAATATCTATGAAAGAACTTATCCAATTGGCCTACTGGACCCCGACAGTATCAGTTTAACATACAGTGCTTTGGCCACGATACAGTCCCTTAGCTGA
Protein sequence

>Msa1432100

MSCCCYSGMAGEEDGIMGGLGCAVGVGVRVLQPSSWHYHHHHHLAAITVTRSGFLSSSSSNKNYANFTTTNGRCRRVPLHNSKDREGEVEEGVSSSSSSEWIRNSGIISSCLVGLLTGVAVVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKRVILVPAFGGLLVSLLNLLSNFNFNSRPFLKAIAASITLGTGNSLGPEGPSVDIGNSIAKWIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVILSAVIASVISEIGLGSEPAFQVPDYDFRSPAELPLYLLLGILCGLVSLTLSWSTSYMLTLFDNLHKATGMPKASFPILGGLSVGLIALLYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKIVTTSLCRASGLVGGYYAPSLFIGGATGMAYGKLIAFAVAHSNPVINLSLLEVASPQAYGLRMVVYAGMLLHFDLLGQNKTCKNMFQLEKRPRKGKEAGVARMIISKFLLQVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRGDERDKEKLKIQNSNSSPFPEISSCRSIELSTGNTSAEGVSYLSKSCQVESSSSVEDNNDETMNYVRRTLVSEAMKTRFVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSENRKEILVSELCVLNGGICSVPCTVTPDMELYHAQMIMKEHGVNQVPVVKNIYERTYPIGLLDPDSISLTYSALATIQSLS*