AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093200 MtrunA17_Chr7g0227081 98.966 387 3 1 1 387 1 386 0.0 793
Msa1093200 MtrunA17_Chr8g0381661 77.895 380 83 1 6 385 12 390 0.0 652
Msa1093200 MtrunA17_Chr3g0130111 77.183 355 81 0 31 385 11 365 0.0 605
Msa1093200 MtrunA17_Chr4g0064121 60.000 330 128 2 59 385 33 361 9.97e-154 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093200 AT3G27540.1 77.662 385 85 1 1 385 1 384 0.0 662
Msa1093200 AT5G14480.1 77.003 387 89 0 1 387 1 387 0.0 655
Msa1093200 AT1G12990.1 75.979 383 89 2 5 386 11 391 0.0 629
Msa1093200 AT1G67880.1 75.393 382 89 2 5 385 11 388 0.0 616
Msa1093200 AT3G01620.1 73.454 388 102 1 1 387 1 388 0.0 613
Msa1093200 AT2G13290.2 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1093200 AT2G13290.1 57.429 350 142 2 40 385 14 360 4.34e-150 429
Msa1093200 AT3G26445.1 76.119 67 16 0 210 276 48 114 8.80e-31 114

Find 99 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAGGGTTTCGAAAAT+TGG 0.131488 7_3:-12697541 None:intergenic
CCTAATAGTTGCATGGAATT+TGG 0.131863 7_3:+12697645 Msa1093200:three_prime_UTR
TCCTGAAGAGTATACATTTA+AGG 0.167482 7_3:+12697260 Msa1093200:CDS
TCTTGTCGGTCTGGTATCTA+TGG 0.277247 7_3:-12697035 None:intergenic
TGTTTCACAGTACATACTTC+TGG 0.291532 7_3:+12696651 Msa1093200:CDS
GAAATCTAAAGAAATCAAAA+TGG 0.302602 7_3:-12697748 None:intergenic
GAACAATCGGTGGAAGATTC+AGG 0.321978 7_3:+12696767 Msa1093200:CDS
GCAATGCAAACCCAATTATA+AGG 0.334534 7_3:-12697605 None:intergenic
TCCTTAAATGTATACTCTTC+AGG 0.342084 7_3:-12697261 None:intergenic
TAGATGAATAAGACGCCTAT+TGG 0.351138 7_3:-12696403 None:intergenic
CCAAATTCCATGCAACTATT+AGG 0.379612 7_3:-12697645 None:intergenic
GCTGAATAAGAATGAGGAAT+TGG 0.383311 7_3:-12697303 None:intergenic
TGACGTGCCTCCTCGATAAA+CGG 0.388943 7_3:-12696802 None:intergenic
TGCATATCACGTTCTGAATC+CGG 0.391551 7_3:-12697212 None:intergenic
GTGCGCATACCTTGTCTTGT+CGG 0.397316 7_3:-12697049 None:intergenic
CGTGACATGCTCAGCGCTGC+AGG 0.403088 7_3:-12696319 None:intergenic
GGTACAAAAGCTTGCCCAAA+AGG 0.403881 7_3:-12697584 None:intergenic
GAATCTCTGTGCAAACTTCA+TGG 0.414415 7_3:+12696529 Msa1093200:CDS
AGATGAATAAGACGCCTATT+GGG 0.421213 7_3:-12696402 None:intergenic
ATGTTTGTGATCATCCCAAT+AGG 0.422790 7_3:+12696388 Msa1093200:CDS
GATCTACTGCTGTCGGATGC+TGG 0.423369 7_3:+12697084 Msa1093200:CDS
GTCGAGCCGCGACTAACATA+TGG 0.428067 7_3:+12696745 Msa1093200:CDS
AAATCTAAAGAAATCAAAAT+GGG 0.434036 7_3:-12697747 None:intergenic
ATCACGTTCTGAATCCGGTC+AGG 0.441353 7_3:-12697207 None:intergenic
CATACCTTGTCTTGTCGGTC+TGG 0.448384 7_3:-12697044 None:intergenic
CTCATTACTTAAACCCTGAC+CGG 0.448929 7_3:+12697193 Msa1093200:CDS
CTTTCTCTTCTGCAGTTACC+AGG 0.453735 7_3:-12697381 None:intergenic
TATACACATTCCAACCTCTT+CGG 0.470135 7_3:+12697684 Msa1093200:three_prime_UTR
ATAATTGGGTTTGCATTGCA+TGG 0.471246 7_3:+12697609 Msa1093200:three_prime_UTR
CTCAGTTGTAGATGAAGAAT+CGG 0.476003 7_3:-12696955 None:intergenic
GATCAGCTTCTGAGGATAGC+AGG 0.479846 7_3:+12696838 Msa1093200:CDS
CTTCTTCTTCACCATGTCTG+AGG 0.482163 7_3:+12695426 Msa1093200:exon
GTCTTATTCATCTATTTGCA+CGG 0.483642 7_3:+12696412 Msa1093200:CDS
GTACTTTCTGAGACCATTGT+GGG 0.496653 7_3:+12696447 Msa1093200:CDS
GGGATTTCATGAAACGGCTT+CGG 0.497964 7_3:-12696478 None:intergenic
AAGGAGATCATCGGAAAACT+AGG 0.498825 7_3:+12697279 Msa1093200:CDS
CGGTCAGGGTTTAAGTAATG+AGG 0.504563 7_3:-12697192 None:intergenic
CGACTAACATATGGAACAAT+CGG 0.508701 7_3:+12696754 Msa1093200:CDS
CTGCGATGATGTTTGTGGCC+AGG 0.515957 7_3:+12695480 Msa1093200:CDS
GGCACGTCAAAGAGTTGTGT+TGG 0.521101 7_3:+12696816 Msa1093200:CDS
AACCCTATTGGAGGGAAAAG+TGG 0.523950 7_3:+12697552 Msa1093200:three_prime_UTR
GCAACTATTAGGCAAGTTGA+GGG 0.526905 7_3:-12697634 None:intergenic
CGGTGGAAGATTCAGGAGAA+AGG 0.526990 7_3:+12696774 Msa1093200:CDS
CTCTGTGCAAACTTCATGGG+TGG 0.528232 7_3:+12696533 Msa1093200:CDS
TGCAACTATTAGGCAAGTTG+AGG 0.529302 7_3:-12697635 None:intergenic
GAGATTGATTGTGTGTGCAC+TGG 0.534267 7_3:-12696908 None:intergenic
CGTACTTTCTGAGACCATTG+TGG 0.536588 7_3:+12696446 Msa1093200:CDS
AATCTCTGTGCAAACTTCAT+GGG 0.541036 7_3:+12696530 Msa1093200:CDS
ATACAAATTCACTGATATGA+CGG 0.544679 7_3:-12697128 None:intergenic
CAGTAAGCAACCGAAGAGGT+TGG 0.544723 7_3:-12697694 None:intergenic
CTATTGCTTGCGAAAATCAA+CGG 0.548353 7_3:-12696706 None:intergenic
CGCTGAGCATGTCACGACTT+CGG 0.549286 7_3:+12696326 Msa1093200:CDS
CATAGGGTCATTCTTTAGAG+AGG 0.549437 7_3:+12697469 Msa1093200:three_prime_UTR
GATATCTGCGATGATGTTTG+TGG 0.552217 7_3:+12695475 Msa1093200:CDS
TCTGTGCAAACTTCATGGGT+GGG 0.555491 7_3:+12696534 Msa1093200:CDS
AGTATGTACTGTGAAACATA+AGG 0.555754 7_3:-12696646 None:intergenic
TAGTGAGGGATTTCATGAAA+CGG 0.558083 7_3:-12696484 None:intergenic
AGATACAAGTACTTGTTGCC+TGG 0.559240 7_3:+12697363 Msa1093200:CDS
TGGATATGCTTACTATTCGA+TGG 0.561251 7_3:+12696611 Msa1093200:CDS
CAACAAGTACTTGTATCTAT+CGG 0.570155 7_3:-12697358 None:intergenic
GGTAACTGCAGAAGAGAAAG+TGG 0.570217 7_3:+12697384 Msa1093200:CDS
CTGTGCAAACTTCATGGGTG+GGG 0.573156 7_3:+12696535 Msa1093200:CDS
TCACGTTCTGAATCCGGTCA+GGG 0.579215 7_3:-12697206 None:intergenic
TTATCACGAGAACGTGTCGA+TGG 0.579813 7_3:+12696507 Msa1093200:CDS
ATTTCATGAAACGGCTTCGG+CGG 0.579993 7_3:-12696475 None:intergenic
ATAGGGTCATTCTTTAGAGA+GGG 0.582499 7_3:+12697470 Msa1093200:three_prime_UTR
CTTGACAACAAAAGCTGGAG+AGG 0.583300 7_3:+12697006 Msa1093200:CDS
CAACTTGCCTAATAGTTGCA+TGG 0.583366 7_3:+12697638 Msa1093200:three_prime_UTR
TTGTGTTGGATCAGCTTCTG+AGG 0.586419 7_3:+12696830 Msa1093200:CDS
ATCAGCTTCTGAGGATAGCA+GGG 0.587503 7_3:+12696839 Msa1093200:CDS
TTCGGCGGAGACTCCCACAA+TGG 0.587599 7_3:-12696460 None:intergenic
TCTTATTCATCTATTTGCAC+GGG 0.591487 7_3:+12696413 Msa1093200:CDS
TATACATTTAAGGAGATCAT+CGG 0.591876 7_3:+12697270 Msa1093200:CDS
TTCGAAAATTGGATAAACAG+AGG 0.593280 7_3:-12697530 None:intergenic
AGATTGATTGTGTGTGCACT+GGG 0.593842 7_3:-12696907 None:intergenic
ACAGCATCAAAGACTCGTCT+CGG 0.595137 7_3:-12696571 None:intergenic
TGCACTGCTGAATAAGAATG+AGG 0.596632 7_3:-12697309 None:intergenic
ACAGTCTGATCTACTGCTGT+CGG 0.597913 7_3:+12697077 Msa1093200:CDS
AAGTGGCTGACTCTGAATGT+AGG 0.608682 7_3:+12697401 Msa1093200:exon
CGATTCTTCATCTACAACTG+AGG 0.609395 7_3:+12696956 Msa1093200:CDS
AATCTAAAGAAATCAAAATG+GGG 0.630393 7_3:-12697746 None:intergenic
ATTCAGAACGTGATATGCAA+AGG 0.632732 7_3:+12697216 Msa1093200:CDS
GATACCAGACCGACAAGACA+AGG 0.635119 7_3:+12697040 Msa1093200:CDS
GGTCAGGGTTTAAGTAATGA+GGG 0.637006 7_3:-12697191 None:intergenic
AGTTGTAGATGAAGAATCGG+AGG 0.638652 7_3:-12696952 None:intergenic
GTTGTAGATGAAGAATCGGA+GGG 0.639453 7_3:-12696951 None:intergenic
CGTTCTCGTGATAATAGTGA+GGG 0.639469 7_3:-12696498 None:intergenic
ATCTAAAGAAATCAAAATGG+GGG 0.639917 7_3:-12697745 None:intergenic
TTGACAACAAAAGCTGGAGA+GGG 0.640361 7_3:+12697007 Msa1093200:CDS
ATTGTTCCATATGTTAGTCG+CGG 0.643023 7_3:-12696751 None:intergenic
CACACACAATCAATCTCTTG+AGG 0.645085 7_3:+12696914 Msa1093200:CDS
ACGTTCTCGTGATAATAGTG+AGG 0.652321 7_3:-12696499 None:intergenic
ATTATAGTACTCCTCAGACA+TGG 0.656753 7_3:-12695437 None:intergenic
GGAAAATCCGTTTATCGAGG+AGG 0.661999 7_3:+12696795 Msa1093200:CDS
ACACAATCAATCTCTTGAGG+TGG 0.662731 7_3:+12696917 Msa1093200:CDS
AAATCAGTAAGCAACCGAAG+AGG 0.668086 7_3:-12697698 None:intergenic
GGAATCGCACTCGATCGTAG+TGG 0.685123 7_3:-12697170 None:intergenic
CTAACATATGGAACAATCGG+TGG 0.687645 7_3:+12696757 Msa1093200:CDS
AAAGGAAAATCCGTTTATCG+AGG 0.694930 7_3:+12696792 Msa1093200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAACCATAAT+GGG - chr7_3:12695861-12695880 None:intergenic 10.0%
!! TTAAAAAAAAAAAACCATAA+TGG - chr7_3:12695862-12695881 None:intergenic 10.0%
!! TAAAAAAAAAAAACCATAAT+GGG - chr7_3:12695861-12695880 None:intergenic 10.0%
!! TTAAAAAAAAAAAACCATAA+TGG - chr7_3:12695862-12695881 None:intergenic 10.0%
!!! TGAATTCAATTTTTTTTTTC+TGG + chr7_3:12695742-12695761 Msa1093200:intron 15.0%
!!! GAATTCAATTTTTTTTTTCT+GGG + chr7_3:12695743-12695762 Msa1093200:intron 15.0%
!!! TTAAAGTTTTTTAACCTATT+AGG + chr7_3:12695878-12695897 Msa1093200:intron 15.0%
!! CTACAAATAAAAATACAAAT+GGG - chr7_3:12696062-12696081 None:intergenic 15.0%
!! TCTACAAATAAAAATACAAA+TGG - chr7_3:12696063-12696082 None:intergenic 15.0%
!! ATATAATAAATGACAAAATG+TGG + chr7_3:12696085-12696104 Msa1093200:intron 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG + chr7_3:12697430-12697449 Msa1093200:three_prime_UTR 15.0%
!!! TGAATTCAATTTTTTTTTTC+TGG + chr7_3:12695742-12695761 Msa1093200:intron 15.0%
!!! GAATTCAATTTTTTTTTTCT+GGG + chr7_3:12695743-12695762 Msa1093200:intron 15.0%
!!! TTAAAGTTTTTTAACCTATT+AGG + chr7_3:12695878-12695897 Msa1093200:intron 15.0%
!! CTACAAATAAAAATACAAAT+GGG - chr7_3:12696062-12696081 None:intergenic 15.0%
!! TCTACAAATAAAAATACAAA+TGG - chr7_3:12696063-12696082 None:intergenic 15.0%
!! ATATAATAAATGACAAAATG+TGG + chr7_3:12696085-12696104 Msa1093200:intron 15.0%
!!! TTTTAAATTTTGGTACAAAT+TGG + chr7_3:12697430-12697449 Msa1093200:three_prime_UTR 15.0%
!!! AACTTTTTTTTTTTCTTCTG+TGG + chr7_3:12695397-12695416 Msa1093200:five_prime_UTR 20.0%
!!! ACTTTTTTTTTTTCTTCTGT+GGG + chr7_3:12695398-12695417 Msa1093200:five_prime_UTR 20.0%
!! CAAAAAACAACAAAGAAATA+GGG - chr7_3:12695520-12695539 None:intergenic 20.0%
!! ACAAAAAACAACAAAGAAAT+AGG - chr7_3:12695521-12695540 None:intergenic 20.0%
!!! TTTTCATGTTTTTTTTCTTC+TGG + chr7_3:12695653-12695672 Msa1093200:intron 20.0%
!!! TTTCATGTTTTTTTTCTTCT+GGG + chr7_3:12695654-12695673 Msa1093200:intron 20.0%
!!! AATTCTTTTTCCAAATTTGT+TGG + chr7_3:12695691-12695710 Msa1093200:intron 20.0%
!! ACAAAAAAAACCAACAAATT+TGG - chr7_3:12695704-12695723 None:intergenic 20.0%
!!! ATTGTGGTTTTTTTTTTATG+TGG + chr7_3:12695906-12695925 Msa1093200:intron 20.0%
!!! GGTTTTCAATTTGAAAATTT+TGG + chr7_3:12695941-12695960 Msa1093200:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG + chr7_3:12697420-12697439 Msa1093200:three_prime_UTR 20.0%
!!! AACTTTTTTTTTTTCTTCTG+TGG + chr7_3:12695397-12695416 Msa1093200:five_prime_UTR 20.0%
!!! ACTTTTTTTTTTTCTTCTGT+GGG + chr7_3:12695398-12695417 Msa1093200:five_prime_UTR 20.0%
!! CAAAAAACAACAAAGAAATA+GGG - chr7_3:12695520-12695539 None:intergenic 20.0%
!! ACAAAAAACAACAAAGAAAT+AGG - chr7_3:12695521-12695540 None:intergenic 20.0%
!!! TTTTCATGTTTTTTTTCTTC+TGG + chr7_3:12695653-12695672 Msa1093200:intron 20.0%
!!! TTTCATGTTTTTTTTCTTCT+GGG + chr7_3:12695654-12695673 Msa1093200:intron 20.0%
!!! AATTCTTTTTCCAAATTTGT+TGG + chr7_3:12695691-12695710 Msa1093200:intron 20.0%
!! ACAAAAAAAACCAACAAATT+TGG - chr7_3:12695704-12695723 None:intergenic 20.0%
!!! ATTGTGGTTTTTTTTTTATG+TGG + chr7_3:12695906-12695925 Msa1093200:intron 20.0%
!!! GGTTTTCAATTTGAAAATTT+TGG + chr7_3:12695941-12695960 Msa1093200:intron 20.0%
!!! TAGGTGTTTCTTTTAAATTT+TGG + chr7_3:12697420-12697439 Msa1093200:three_prime_UTR 20.0%
! AATAACCAAACATCAATACA+TGG - chr7_3:12695795-12695814 None:intergenic 25.0%
! TTGAATTTAGAGATGATTGA+TGG + chr7_3:12695829-12695848 Msa1093200:intron 25.0%
! TGAATTTAGAGATGATTGAT+GGG + chr7_3:12695830-12695849 Msa1093200:intron 25.0%
!! TTTTATGTGGCATTAGAATT+AGG + chr7_3:12695919-12695938 Msa1093200:intron 25.0%
! TTTATGTGGCATTAGAATTA+GGG + chr7_3:12695920-12695939 Msa1093200:intron 25.0%
! ATAGACAAAAGGGTTAAAAA+GGG - chr7_3:12695975-12695994 None:intergenic 25.0%
! AACATGTTACATAGACAAAA+GGG - chr7_3:12695985-12696004 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG - chr7_3:12695986-12696005 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG + chr7_3:12696092-12696111 Msa1093200:intron 25.0%
!!! ATGTGATTTCATTTGATTTG+AGG + chr7_3:12696130-12696149 Msa1093200:intron 25.0%
! TGATATCATAAAGATGAAGT+TGG + chr7_3:12696172-12696191 Msa1093200:intron 25.0%
!! ATTGTGTCTTAAGAGATTTT+TGG + chr7_3:12696275-12696294 Msa1093200:intron 25.0%
! ATACAAATTCACTGATATGA+CGG - chr7_3:12697131-12697150 None:intergenic 25.0%
! TATACATTTAAGGAGATCAT+CGG + chr7_3:12697270-12697289 Msa1093200:CDS 25.0%
! GCATTATTTAACAAAAATGC+AGG - chr7_3:12697339-12697358 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG + chr7_3:12697453-12697472 Msa1093200:three_prime_UTR 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG + chr7_3:12697594-12697613 Msa1093200:three_prime_UTR 25.0%
!! AGCTTTTGTACCTTATAATT+GGG + chr7_3:12697595-12697614 Msa1093200:three_prime_UTR 25.0%
! AATAACCAAACATCAATACA+TGG - chr7_3:12695795-12695814 None:intergenic 25.0%
! TTGAATTTAGAGATGATTGA+TGG + chr7_3:12695829-12695848 Msa1093200:intron 25.0%
! TGAATTTAGAGATGATTGAT+GGG + chr7_3:12695830-12695849 Msa1093200:intron 25.0%
!! TTTTATGTGGCATTAGAATT+AGG + chr7_3:12695919-12695938 Msa1093200:intron 25.0%
! TTTATGTGGCATTAGAATTA+GGG + chr7_3:12695920-12695939 Msa1093200:intron 25.0%
! ATAGACAAAAGGGTTAAAAA+GGG - chr7_3:12695975-12695994 None:intergenic 25.0%
! AACATGTTACATAGACAAAA+GGG - chr7_3:12695985-12696004 None:intergenic 25.0%
! AAACATGTTACATAGACAAA+AGG - chr7_3:12695986-12696005 None:intergenic 25.0%
!! AAATGACAAAATGTGGTTTT+TGG + chr7_3:12696092-12696111 Msa1093200:intron 25.0%
!!! ATGTGATTTCATTTGATTTG+AGG + chr7_3:12696130-12696149 Msa1093200:intron 25.0%
! TGATATCATAAAGATGAAGT+TGG + chr7_3:12696172-12696191 Msa1093200:intron 25.0%
!! ATTGTGTCTTAAGAGATTTT+TGG + chr7_3:12696275-12696294 Msa1093200:intron 25.0%
! ATACAAATTCACTGATATGA+CGG - chr7_3:12697131-12697150 None:intergenic 25.0%
! TATACATTTAAGGAGATCAT+CGG + chr7_3:12697270-12697289 Msa1093200:CDS 25.0%
! GCATTATTTAACAAAAATGC+AGG - chr7_3:12697339-12697358 None:intergenic 25.0%
!! ACACTTTTGAATGATTCATA+GGG + chr7_3:12697453-12697472 Msa1093200:three_prime_UTR 25.0%
!! AAGCTTTTGTACCTTATAAT+TGG + chr7_3:12697594-12697613 Msa1093200:three_prime_UTR 25.0%
!! AGCTTTTGTACCTTATAATT+GGG + chr7_3:12697595-12697614 Msa1093200:three_prime_UTR 25.0%
!!! GCAGATATCATCAGTTTTTT+TGG - chr7_3:12695464-12695483 None:intergenic 30.0%
AGGGAAAAAAAAAAAGAACC+TGG - chr7_3:12695501-12695520 None:intergenic 30.0%
CATCAATACATGGAGATAAA+GGG - chr7_3:12695785-12695804 None:intergenic 30.0%
ACATCAATACATGGAGATAA+AGG - chr7_3:12695786-12695805 None:intergenic 30.0%
! TATCTCCATGTATTGATGTT+TGG + chr7_3:12695787-12695806 Msa1093200:intron 30.0%
AACCTATTAGGATTGAATTG+TGG + chr7_3:12695890-12695909 Msa1093200:intron 30.0%
AACCACAATTCAATCCTAAT+AGG - chr7_3:12695895-12695914 None:intergenic 30.0%
CATAGACAAAAGGGTTAAAA+AGG - chr7_3:12695976-12695995 None:intergenic 30.0%
GAAATCACATGAACATAAAC+CGG - chr7_3:12696120-12696139 None:intergenic 30.0%
!! GATTTCATTTGATTTGAGGT+TGG + chr7_3:12696134-12696153 Msa1093200:intron 30.0%
TGTGAAATTAAGCATGTAGT+AGG + chr7_3:12696224-12696243 Msa1093200:intron 30.0%
ATTAAGCATGTAGTAGGTTA+AGG + chr7_3:12696230-12696249 Msa1093200:intron 30.0%
! GTCTTATTCATCTATTTGCA+CGG + chr7_3:12696412-12696431 Msa1093200:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG + chr7_3:12696413-12696432 Msa1093200:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG + chr7_3:12696591-12696610 Msa1093200:CDS 30.0%
AGTATGTACTGTGAAACATA+AGG - chr7_3:12696649-12696668 None:intergenic 30.0%
! GAATCAAACTCAACTTTTAC+AGG + chr7_3:12696673-12696692 Msa1093200:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG + chr7_3:12696876-12696895 Msa1093200:CDS 30.0%
! TCCTGAAGAGTATACATTTA+AGG + chr7_3:12697260-12697279 Msa1093200:CDS 30.0%
TCCTTAAATGTATACTCTTC+AGG - chr7_3:12697264-12697283 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG - chr7_3:12697361-12697380 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG + chr7_3:12697452-12697471 Msa1093200:three_prime_UTR 30.0%
TTCGAAAATTGGATAAACAG+AGG - chr7_3:12697533-12697552 None:intergenic 30.0%
!!! AAGTGGTTTTTTATGCCTTT+TGG + chr7_3:12697569-12697588 Msa1093200:three_prime_UTR 30.0%
!!! AGTGGTTTTTTATGCCTTTT+GGG + chr7_3:12697570-12697589 Msa1093200:three_prime_UTR 30.0%
! GCATGGAATTTGGATTTTAT+TGG + chr7_3:12697655-12697674 Msa1093200:three_prime_UTR 30.0%
!!! GCAGATATCATCAGTTTTTT+TGG - chr7_3:12695464-12695483 None:intergenic 30.0%
AGGGAAAAAAAAAAAGAACC+TGG - chr7_3:12695501-12695520 None:intergenic 30.0%
CATCAATACATGGAGATAAA+GGG - chr7_3:12695785-12695804 None:intergenic 30.0%
ACATCAATACATGGAGATAA+AGG - chr7_3:12695786-12695805 None:intergenic 30.0%
! TATCTCCATGTATTGATGTT+TGG + chr7_3:12695787-12695806 Msa1093200:intron 30.0%
AACCTATTAGGATTGAATTG+TGG + chr7_3:12695890-12695909 Msa1093200:intron 30.0%
AACCACAATTCAATCCTAAT+AGG - chr7_3:12695895-12695914 None:intergenic 30.0%
CATAGACAAAAGGGTTAAAA+AGG - chr7_3:12695976-12695995 None:intergenic 30.0%
GAAATCACATGAACATAAAC+CGG - chr7_3:12696120-12696139 None:intergenic 30.0%
!! GATTTCATTTGATTTGAGGT+TGG + chr7_3:12696134-12696153 Msa1093200:intron 30.0%
TGTGAAATTAAGCATGTAGT+AGG + chr7_3:12696224-12696243 Msa1093200:intron 30.0%
ATTAAGCATGTAGTAGGTTA+AGG + chr7_3:12696230-12696249 Msa1093200:intron 30.0%
! GTCTTATTCATCTATTTGCA+CGG + chr7_3:12696412-12696431 Msa1093200:CDS 30.0%
TCTTATTCATCTATTTGCAC+GGG + chr7_3:12696413-12696432 Msa1093200:CDS 30.0%
!!! TGTTTTGTTTAGCAATGAAG+TGG + chr7_3:12696591-12696610 Msa1093200:CDS 30.0%
AGTATGTACTGTGAAACATA+AGG - chr7_3:12696649-12696668 None:intergenic 30.0%
! GAATCAAACTCAACTTTTAC+AGG + chr7_3:12696673-12696692 Msa1093200:CDS 30.0%
!!! TCTTTTGATAATGTCTGATG+TGG + chr7_3:12696876-12696895 Msa1093200:CDS 30.0%
! TCCTGAAGAGTATACATTTA+AGG + chr7_3:12697260-12697279 Msa1093200:CDS 30.0%
TCCTTAAATGTATACTCTTC+AGG - chr7_3:12697264-12697283 None:intergenic 30.0%
CAACAAGTACTTGTATCTAT+CGG - chr7_3:12697361-12697380 None:intergenic 30.0%
! GACACTTTTGAATGATTCAT+AGG + chr7_3:12697452-12697471 Msa1093200:three_prime_UTR 30.0%
TTCGAAAATTGGATAAACAG+AGG - chr7_3:12697533-12697552 None:intergenic 30.0%
!!! AAGTGGTTTTTTATGCCTTT+TGG + chr7_3:12697569-12697588 Msa1093200:three_prime_UTR 30.0%
!!! AGTGGTTTTTTATGCCTTTT+GGG + chr7_3:12697570-12697589 Msa1093200:three_prime_UTR 30.0%
! GCATGGAATTTGGATTTTAT+TGG + chr7_3:12697655-12697674 Msa1093200:three_prime_UTR 30.0%
ATTATAGTACTCCTCAGACA+TGG - chr7_3:12695440-12695459 None:intergenic 35.0%
! TGTTTTCATGAGTTTCTGTG+TGG + chr7_3:12695591-12695610 Msa1093200:intron 35.0%
! TTTTGTTGCCAATGCAAAAC+TGG + chr7_3:12695619-12695638 Msa1093200:intron 35.0%
!! TTGATGGGTTTATCCCATTA+TGG + chr7_3:12695845-12695864 Msa1093200:intron 35.0%
!!! CAAAATGTGGTTTTTGGAAC+CGG + chr7_3:12696098-12696117 Msa1093200:intron 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG + chr7_3:12696291-12696310 Msa1093200:intron 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG + chr7_3:12696292-12696311 Msa1093200:intron 35.0%
ATGTTTGTGATCATCCCAAT+AGG + chr7_3:12696388-12696407 Msa1093200:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG - chr7_3:12696405-12696424 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG - chr7_3:12696406-12696425 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG - chr7_3:12696487-12696506 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG + chr7_3:12696530-12696549 Msa1093200:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG + chr7_3:12696611-12696630 Msa1093200:CDS 35.0%
TGTTTCACAGTACATACTTC+TGG + chr7_3:12696651-12696670 Msa1093200:CDS 35.0%
CTATTGCTTGCGAAAATCAA+CGG - chr7_3:12696709-12696728 None:intergenic 35.0%
ATTGTTCCATATGTTAGTCG+CGG - chr7_3:12696754-12696773 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG + chr7_3:12696754-12696773 Msa1093200:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG + chr7_3:12696792-12696811 Msa1093200:CDS 35.0%
CTCAGTTGTAGATGAAGAAT+CGG - chr7_3:12696958-12696977 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG + chr7_3:12697001-12697020 Msa1093200:CDS 35.0%
ATTCAGAACGTGATATGCAA+AGG + chr7_3:12697216-12697235 Msa1093200:CDS 35.0%
GCTGAATAAGAATGAGGAAT+TGG - chr7_3:12697306-12697325 None:intergenic 35.0%
! ATAGGGTCATTCTTTAGAGA+GGG + chr7_3:12697470-12697489 Msa1093200:three_prime_UTR 35.0%
! TCCAATTTTCGAAACCCTAT+TGG + chr7_3:12697540-12697559 Msa1093200:three_prime_UTR 35.0%
TCCAATAGGGTTTCGAAAAT+TGG - chr7_3:12697544-12697563 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG + chr7_3:12697543-12697562 Msa1093200:three_prime_UTR 35.0%
! ATTTTCGAAACCCTATTGGA+GGG + chr7_3:12697544-12697563 Msa1093200:three_prime_UTR 35.0%
GCAATGCAAACCCAATTATA+AGG - chr7_3:12697608-12697627 None:intergenic 35.0%
ATAATTGGGTTTGCATTGCA+TGG + chr7_3:12697609-12697628 Msa1093200:three_prime_UTR 35.0%
CCAAATTCCATGCAACTATT+AGG - chr7_3:12697648-12697667 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG + chr7_3:12697645-12697664 Msa1093200:three_prime_UTR 35.0%
TATACACATTCCAACCTCTT+CGG + chr7_3:12697684-12697703 Msa1093200:three_prime_UTR 35.0%
ATTATAGTACTCCTCAGACA+TGG - chr7_3:12695440-12695459 None:intergenic 35.0%
! TGTTTTCATGAGTTTCTGTG+TGG + chr7_3:12695591-12695610 Msa1093200:intron 35.0%
! TTTTGTTGCCAATGCAAAAC+TGG + chr7_3:12695619-12695638 Msa1093200:intron 35.0%
!! TTGATGGGTTTATCCCATTA+TGG + chr7_3:12695845-12695864 Msa1093200:intron 35.0%
!!! CAAAATGTGGTTTTTGGAAC+CGG + chr7_3:12696098-12696117 Msa1093200:intron 35.0%
!!! TTTTTGGTTTTCTATGCAGC+AGG + chr7_3:12696291-12696310 Msa1093200:intron 35.0%
!!! TTTTGGTTTTCTATGCAGCA+GGG + chr7_3:12696292-12696311 Msa1093200:intron 35.0%
ATGTTTGTGATCATCCCAAT+AGG + chr7_3:12696388-12696407 Msa1093200:CDS 35.0%
AGATGAATAAGACGCCTATT+GGG - chr7_3:12696405-12696424 None:intergenic 35.0%
TAGATGAATAAGACGCCTAT+TGG - chr7_3:12696406-12696425 None:intergenic 35.0%
TAGTGAGGGATTTCATGAAA+CGG - chr7_3:12696487-12696506 None:intergenic 35.0%
AATCTCTGTGCAAACTTCAT+GGG + chr7_3:12696530-12696549 Msa1093200:CDS 35.0%
TGGATATGCTTACTATTCGA+TGG + chr7_3:12696611-12696630 Msa1093200:CDS 35.0%
TGTTTCACAGTACATACTTC+TGG + chr7_3:12696651-12696670 Msa1093200:CDS 35.0%
CTATTGCTTGCGAAAATCAA+CGG - chr7_3:12696709-12696728 None:intergenic 35.0%
ATTGTTCCATATGTTAGTCG+CGG - chr7_3:12696754-12696773 None:intergenic 35.0%
CGACTAACATATGGAACAAT+CGG + chr7_3:12696754-12696773 Msa1093200:CDS 35.0%
AAAGGAAAATCCGTTTATCG+AGG + chr7_3:12696792-12696811 Msa1093200:CDS 35.0%
CTCAGTTGTAGATGAAGAAT+CGG - chr7_3:12696958-12696977 None:intergenic 35.0%
! TTTTCCTTGACAACAAAAGC+TGG + chr7_3:12697001-12697020 Msa1093200:CDS 35.0%
ATTCAGAACGTGATATGCAA+AGG + chr7_3:12697216-12697235 Msa1093200:CDS 35.0%
GCTGAATAAGAATGAGGAAT+TGG - chr7_3:12697306-12697325 None:intergenic 35.0%
! ATAGGGTCATTCTTTAGAGA+GGG + chr7_3:12697470-12697489 Msa1093200:three_prime_UTR 35.0%
! TCCAATTTTCGAAACCCTAT+TGG + chr7_3:12697540-12697559 Msa1093200:three_prime_UTR 35.0%
TCCAATAGGGTTTCGAAAAT+TGG - chr7_3:12697544-12697563 None:intergenic 35.0%
! AATTTTCGAAACCCTATTGG+AGG + chr7_3:12697543-12697562 Msa1093200:three_prime_UTR 35.0%
! ATTTTCGAAACCCTATTGGA+GGG + chr7_3:12697544-12697563 Msa1093200:three_prime_UTR 35.0%
GCAATGCAAACCCAATTATA+AGG - chr7_3:12697608-12697627 None:intergenic 35.0%
ATAATTGGGTTTGCATTGCA+TGG + chr7_3:12697609-12697628 Msa1093200:three_prime_UTR 35.0%
CCAAATTCCATGCAACTATT+AGG - chr7_3:12697648-12697667 None:intergenic 35.0%
CCTAATAGTTGCATGGAATT+TGG + chr7_3:12697645-12697664 Msa1093200:three_prime_UTR 35.0%
TATACACATTCCAACCTCTT+CGG + chr7_3:12697684-12697703 Msa1093200:three_prime_UTR 35.0%
GATATCTGCGATGATGTTTG+TGG + chr7_3:12695475-12695494 Msa1093200:CDS 40.0%
TTCATGAGTTTCTGTGTGGT+TGG + chr7_3:12695595-12695614 Msa1093200:intron 40.0%
TCATGAGTTTCTGTGTGGTT+GGG + chr7_3:12695596-12695615 Msa1093200:intron 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG - chr7_3:12695630-12695649 None:intergenic 40.0%
!! GTACTTTCTGAGACCATTGT+GGG + chr7_3:12696447-12696466 Msa1093200:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG - chr7_3:12696501-12696520 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG - chr7_3:12696502-12696521 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG + chr7_3:12696529-12696548 Msa1093200:CDS 40.0%
CTAACATATGGAACAATCGG+TGG + chr7_3:12696757-12696776 Msa1093200:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG - chr7_3:12696910-12696929 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG + chr7_3:12696914-12696933 Msa1093200:CDS 40.0%
ACACAATCAATCTCTTGAGG+TGG + chr7_3:12696917-12696936 Msa1093200:CDS 40.0%
GTTGTAGATGAAGAATCGGA+GGG - chr7_3:12696954-12696973 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG - chr7_3:12696955-12696974 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG + chr7_3:12696956-12696975 Msa1093200:CDS 40.0%
TTGACAACAAAAGCTGGAGA+GGG + chr7_3:12697007-12697026 Msa1093200:CDS 40.0%
GGTCAGGGTTTAAGTAATGA+GGG - chr7_3:12697194-12697213 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG + chr7_3:12697193-12697212 Msa1093200:CDS 40.0%
! TGCATATCACGTTCTGAATC+CGG - chr7_3:12697215-12697234 None:intergenic 40.0%
AAGGAGATCATCGGAAAACT+AGG + chr7_3:12697279-12697298 Msa1093200:CDS 40.0%
TGCACTGCTGAATAAGAATG+AGG - chr7_3:12697312-12697331 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG + chr7_3:12697363-12697382 Msa1093200:CDS 40.0%
! CATAGGGTCATTCTTTAGAG+AGG + chr7_3:12697469-12697488 Msa1093200:three_prime_UTR 40.0%
!! AACCACTTTTCCCTCCAATA+GGG - chr7_3:12697557-12697576 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG - chr7_3:12697558-12697577 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG - chr7_3:12697637-12697656 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG - chr7_3:12697638-12697657 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG + chr7_3:12697638-12697657 Msa1093200:three_prime_UTR 40.0%
AAATCAGTAAGCAACCGAAG+AGG - chr7_3:12697701-12697720 None:intergenic 40.0%
GATATCTGCGATGATGTTTG+TGG + chr7_3:12695475-12695494 Msa1093200:CDS 40.0%
TTCATGAGTTTCTGTGTGGT+TGG + chr7_3:12695595-12695614 Msa1093200:intron 40.0%
TCATGAGTTTCTGTGTGGTT+GGG + chr7_3:12695596-12695615 Msa1093200:intron 40.0%
! CTCAAGTTCCAGTTTTGCAT+TGG - chr7_3:12695630-12695649 None:intergenic 40.0%
!! GTACTTTCTGAGACCATTGT+GGG + chr7_3:12696447-12696466 Msa1093200:CDS 40.0%
CGTTCTCGTGATAATAGTGA+GGG - chr7_3:12696501-12696520 None:intergenic 40.0%
ACGTTCTCGTGATAATAGTG+AGG - chr7_3:12696502-12696521 None:intergenic 40.0%
GAATCTCTGTGCAAACTTCA+TGG + chr7_3:12696529-12696548 Msa1093200:CDS 40.0%
CTAACATATGGAACAATCGG+TGG + chr7_3:12696757-12696776 Msa1093200:CDS 40.0%
AGATTGATTGTGTGTGCACT+GGG - chr7_3:12696910-12696929 None:intergenic 40.0%
CACACACAATCAATCTCTTG+AGG + chr7_3:12696914-12696933 Msa1093200:CDS 40.0%
ACACAATCAATCTCTTGAGG+TGG + chr7_3:12696917-12696936 Msa1093200:CDS 40.0%
GTTGTAGATGAAGAATCGGA+GGG - chr7_3:12696954-12696973 None:intergenic 40.0%
AGTTGTAGATGAAGAATCGG+AGG - chr7_3:12696955-12696974 None:intergenic 40.0%
CGATTCTTCATCTACAACTG+AGG + chr7_3:12696956-12696975 Msa1093200:CDS 40.0%
TTGACAACAAAAGCTGGAGA+GGG + chr7_3:12697007-12697026 Msa1093200:CDS 40.0%
GGTCAGGGTTTAAGTAATGA+GGG - chr7_3:12697194-12697213 None:intergenic 40.0%
CTCATTACTTAAACCCTGAC+CGG + chr7_3:12697193-12697212 Msa1093200:CDS 40.0%
! TGCATATCACGTTCTGAATC+CGG - chr7_3:12697215-12697234 None:intergenic 40.0%
AAGGAGATCATCGGAAAACT+AGG + chr7_3:12697279-12697298 Msa1093200:CDS 40.0%
TGCACTGCTGAATAAGAATG+AGG - chr7_3:12697312-12697331 None:intergenic 40.0%
! AGATACAAGTACTTGTTGCC+TGG + chr7_3:12697363-12697382 Msa1093200:CDS 40.0%
! CATAGGGTCATTCTTTAGAG+AGG + chr7_3:12697469-12697488 Msa1093200:three_prime_UTR 40.0%
!! AACCACTTTTCCCTCCAATA+GGG - chr7_3:12697557-12697576 None:intergenic 40.0%
!! AAACCACTTTTCCCTCCAAT+AGG - chr7_3:12697558-12697577 None:intergenic 40.0%
! GCAACTATTAGGCAAGTTGA+GGG - chr7_3:12697637-12697656 None:intergenic 40.0%
TGCAACTATTAGGCAAGTTG+AGG - chr7_3:12697638-12697657 None:intergenic 40.0%
CAACTTGCCTAATAGTTGCA+TGG + chr7_3:12697638-12697657 Msa1093200:three_prime_UTR 40.0%
AAATCAGTAAGCAACCGAAG+AGG - chr7_3:12697701-12697720 None:intergenic 40.0%
!!! TTTTTTGTGTGTGCGCGTGT+GGG - chr7_3:12695368-12695387 None:intergenic 45.0%
!!! TTTTTTTGTGTGTGCGCGTG+TGG - chr7_3:12695369-12695388 None:intergenic 45.0%
CTTCTTCTTCACCATGTCTG+AGG + chr7_3:12695426-12695445 Msa1093200:exon 45.0%
! TCGGTGTATTTTGCGAGGAT+TGG + chr7_3:12696345-12696364 Msa1093200:CDS 45.0%
!! CGTACTTTCTGAGACCATTG+TGG + chr7_3:12696446-12696465 Msa1093200:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG - chr7_3:12696478-12696497 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG - chr7_3:12696481-12696500 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG + chr7_3:12696507-12696526 Msa1093200:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG + chr7_3:12696534-12696553 Msa1093200:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG - chr7_3:12696574-12696593 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG + chr7_3:12696767-12696786 Msa1093200:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG + chr7_3:12696795-12696814 Msa1093200:CDS 45.0%
TTGTGTTGGATCAGCTTCTG+AGG + chr7_3:12696830-12696849 Msa1093200:CDS 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG + chr7_3:12696839-12696858 Msa1093200:CDS 45.0%
GAGATTGATTGTGTGTGCAC+TGG - chr7_3:12696911-12696930 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG - chr7_3:12697008-12697027 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG + chr7_3:12697006-12697025 Msa1093200:CDS 45.0%
TCTTGTCGGTCTGGTATCTA+TGG - chr7_3:12697038-12697057 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG + chr7_3:12697077-12697096 Msa1093200:CDS 45.0%
CGGTCAGGGTTTAAGTAATG+AGG - chr7_3:12697195-12697214 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG - chr7_3:12697384-12697403 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG + chr7_3:12697384-12697403 Msa1093200:CDS 45.0%
! AAGTGGCTGACTCTGAATGT+AGG + chr7_3:12697401-12697420 Msa1093200:exon 45.0%
AACCCTATTGGAGGGAAAAG+TGG + chr7_3:12697552-12697571 Msa1093200:three_prime_UTR 45.0%
GGTACAAAAGCTTGCCCAAA+AGG - chr7_3:12697587-12697606 None:intergenic 45.0%
!!! TTTTTTGTGTGTGCGCGTGT+GGG - chr7_3:12695368-12695387 None:intergenic 45.0%
!!! TTTTTTTGTGTGTGCGCGTG+TGG - chr7_3:12695369-12695388 None:intergenic 45.0%
CTTCTTCTTCACCATGTCTG+AGG + chr7_3:12695426-12695445 Msa1093200:exon 45.0%
! TCGGTGTATTTTGCGAGGAT+TGG + chr7_3:12696345-12696364 Msa1093200:CDS 45.0%
!! CGTACTTTCTGAGACCATTG+TGG + chr7_3:12696446-12696465 Msa1093200:CDS 45.0%
ATTTCATGAAACGGCTTCGG+CGG - chr7_3:12696478-12696497 None:intergenic 45.0%
GGGATTTCATGAAACGGCTT+CGG - chr7_3:12696481-12696500 None:intergenic 45.0%
TTATCACGAGAACGTGTCGA+TGG + chr7_3:12696507-12696526 Msa1093200:CDS 45.0%
TCTGTGCAAACTTCATGGGT+GGG + chr7_3:12696534-12696553 Msa1093200:CDS 45.0%
ACAGCATCAAAGACTCGTCT+CGG - chr7_3:12696574-12696593 None:intergenic 45.0%
GAACAATCGGTGGAAGATTC+AGG + chr7_3:12696767-12696786 Msa1093200:CDS 45.0%
GGAAAATCCGTTTATCGAGG+AGG + chr7_3:12696795-12696814 Msa1093200:CDS 45.0%
TTGTGTTGGATCAGCTTCTG+AGG + chr7_3:12696830-12696849 Msa1093200:CDS 45.0%
! ATCAGCTTCTGAGGATAGCA+GGG + chr7_3:12696839-12696858 Msa1093200:CDS 45.0%
GAGATTGATTGTGTGTGCAC+TGG - chr7_3:12696911-12696930 None:intergenic 45.0%
!! CTCTCCAGCTTTTGTTGTCA+AGG - chr7_3:12697008-12697027 None:intergenic 45.0%
CTTGACAACAAAAGCTGGAG+AGG + chr7_3:12697006-12697025 Msa1093200:CDS 45.0%
TCTTGTCGGTCTGGTATCTA+TGG - chr7_3:12697038-12697057 None:intergenic 45.0%
ACAGTCTGATCTACTGCTGT+CGG + chr7_3:12697077-12697096 Msa1093200:CDS 45.0%
CGGTCAGGGTTTAAGTAATG+AGG - chr7_3:12697195-12697214 None:intergenic 45.0%
CTTTCTCTTCTGCAGTTACC+AGG - chr7_3:12697384-12697403 None:intergenic 45.0%
GGTAACTGCAGAAGAGAAAG+TGG + chr7_3:12697384-12697403 Msa1093200:CDS 45.0%
! AAGTGGCTGACTCTGAATGT+AGG + chr7_3:12697401-12697420 Msa1093200:exon 45.0%
AACCCTATTGGAGGGAAAAG+TGG + chr7_3:12697552-12697571 Msa1093200:three_prime_UTR 45.0%
GGTACAAAAGCTTGCCCAAA+AGG - chr7_3:12697587-12697606 None:intergenic 45.0%
!! CGACTTCGGTGTATTTTGCG+AGG + chr7_3:12696340-12696359 Msa1093200:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG + chr7_3:12696533-12696552 Msa1093200:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG + chr7_3:12696535-12696554 Msa1093200:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG + chr7_3:12696774-12696793 Msa1093200:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG - chr7_3:12696805-12696824 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG + chr7_3:12696816-12696835 Msa1093200:CDS 50.0%
! GATCAGCTTCTGAGGATAGC+AGG + chr7_3:12696838-12696857 Msa1093200:CDS 50.0%
GATACCAGACCGACAAGACA+AGG + chr7_3:12697040-12697059 Msa1093200:CDS 50.0%
CATACCTTGTCTTGTCGGTC+TGG - chr7_3:12697047-12697066 None:intergenic 50.0%
GTGCGCATACCTTGTCTTGT+CGG - chr7_3:12697052-12697071 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG - chr7_3:12697209-12697228 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG - chr7_3:12697210-12697229 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG - chr7_3:12697697-12697716 None:intergenic 50.0%
!! CGACTTCGGTGTATTTTGCG+AGG + chr7_3:12696340-12696359 Msa1093200:CDS 50.0%
CTCTGTGCAAACTTCATGGG+TGG + chr7_3:12696533-12696552 Msa1093200:CDS 50.0%
CTGTGCAAACTTCATGGGTG+GGG + chr7_3:12696535-12696554 Msa1093200:CDS 50.0%
CGGTGGAAGATTCAGGAGAA+AGG + chr7_3:12696774-12696793 Msa1093200:CDS 50.0%
TGACGTGCCTCCTCGATAAA+CGG - chr7_3:12696805-12696824 None:intergenic 50.0%
GGCACGTCAAAGAGTTGTGT+TGG + chr7_3:12696816-12696835 Msa1093200:CDS 50.0%
! GATCAGCTTCTGAGGATAGC+AGG + chr7_3:12696838-12696857 Msa1093200:CDS 50.0%
GATACCAGACCGACAAGACA+AGG + chr7_3:12697040-12697059 Msa1093200:CDS 50.0%
CATACCTTGTCTTGTCGGTC+TGG - chr7_3:12697047-12697066 None:intergenic 50.0%
GTGCGCATACCTTGTCTTGT+CGG - chr7_3:12697052-12697071 None:intergenic 50.0%
! TCACGTTCTGAATCCGGTCA+GGG - chr7_3:12697209-12697228 None:intergenic 50.0%
! ATCACGTTCTGAATCCGGTC+AGG - chr7_3:12697210-12697229 None:intergenic 50.0%
CAGTAAGCAACCGAAGAGGT+TGG - chr7_3:12697697-12697716 None:intergenic 50.0%
CTGCGATGATGTTTGTGGCC+AGG + chr7_3:12695480-12695499 Msa1093200:CDS 55.0%
CGCTGAGCATGTCACGACTT+CGG + chr7_3:12696326-12696345 Msa1093200:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG + chr7_3:12696745-12696764 Msa1093200:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG + chr7_3:12697084-12697103 Msa1093200:CDS 55.0%
GGAATCGCACTCGATCGTAG+TGG - chr7_3:12697173-12697192 None:intergenic 55.0%
CTGCGATGATGTTTGTGGCC+AGG + chr7_3:12695480-12695499 Msa1093200:CDS 55.0%
CGCTGAGCATGTCACGACTT+CGG + chr7_3:12696326-12696345 Msa1093200:CDS 55.0%
GTCGAGCCGCGACTAACATA+TGG + chr7_3:12696745-12696764 Msa1093200:CDS 55.0%
GATCTACTGCTGTCGGATGC+TGG + chr7_3:12697084-12697103 Msa1093200:CDS 55.0%
GGAATCGCACTCGATCGTAG+TGG - chr7_3:12697173-12697192 None:intergenic 55.0%
TTCGGCGGAGACTCCCACAA+TGG - chr7_3:12696463-12696482 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG + chr7_3:12697088-12697107 Msa1093200:CDS 60.0%
TTCGGCGGAGACTCCCACAA+TGG - chr7_3:12696463-12696482 None:intergenic 60.0%
TACTGCTGTCGGATGCTGGC+TGG + chr7_3:12697088-12697107 Msa1093200:CDS 60.0%
CGTGACATGCTCAGCGCTGC+AGG - chr7_3:12696322-12696341 None:intergenic 65.0%
CGTGACATGCTCAGCGCTGC+AGG - chr7_3:12696322-12696341 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 12695350 12697766 12695350 ID=Msa1093200;Name=Msa1093200
chr7_3 mRNA 12695350 12697766 12695350 ID=Msa1093200-mRNA-1;Parent=Msa1093200;Name=Msa1093200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=89|0|0.5|1|1|1|2|356|387
chr7_3 exon 12695350 12695501 12695350 ID=Msa1093200-mRNA-1:exon:2993;Parent=Msa1093200-mRNA-1
chr7_3 exon 12696310 12697766 12696310 ID=Msa1093200-mRNA-1:exon:2994;Parent=Msa1093200-mRNA-1
chr7_3 five_prime_UTR 12695350 12695438 12695350 ID=Msa1093200-mRNA-1:five_prime_utr;Parent=Msa1093200-mRNA-1
chr7_3 CDS 12695439 12695501 12695439 ID=Msa1093200-mRNA-1:cds;Parent=Msa1093200-mRNA-1
chr7_3 CDS 12696310 12697410 12696310 ID=Msa1093200-mRNA-1:cds;Parent=Msa1093200-mRNA-1
chr7_3 three_prime_UTR 12697411 12697766 12697411 ID=Msa1093200-mRNA-1:three_prime_utr;Parent=Msa1093200-mRNA-1
Gene Sequence

>Msa1093200

ATGTCTGAGGAGTACTATAATTCCAAAAAAACTGATGATATCTGCGATGATGTTTGTGGCCAGCAGGGAACACCTGCAGCGCTGAGCATGTCACGACTTCGGTGTATTTTGCGAGGATTGGATTTCAAGACTTACATATTTATGTTTGTGATCATCCCAATAGGCGTCTTATTCATCTATTTGCACGGGCAGAAAATCTCGTACTTTCTGAGACCATTGTGGGAGTCTCCGCCGAAGCCGTTTCATGAAATCCCTCACTATTATCACGAGAACGTGTCGATGGAATCTCTGTGCAAACTTCATGGGTGGGGAATTCGTGAATCGCCGAGACGAGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTGGATATGCTTACTATTCGATGGAAAGAAATGTATCCTTATGTTTCACAGTACATACTTCTGGAATCAAACTCAACTTTTACAGGATTTGTCAAACCGTTGATTTTCGCAAGCAATAGAGACAAGTTCAAGTTTGTCGAGCCGCGACTAACATATGGAACAATCGGTGGAAGATTCAGGAGAAAGGAAAATCCGTTTATCGAGGAGGCACGTCAAAGAGTTGTGTTGGATCAGCTTCTGAGGATAGCAGGGATTGAAGATGACGATCTTTTGATAATGTCTGATGTGGATGAGATTCCCAGTGCACACACAATCAATCTCTTGAGGTGGTGTGACGATATCCCTCCGATTCTTCATCTACAACTGAGGAATTACTTGTACTCTTTCGAGTTTTTCCTTGACAACAAAAGCTGGAGAGGGTCAATCCATAGATACCAGACCGACAAGACAAGGTATGCGCACTATAGACAGTCTGATCTACTGCTGTCGGATGCTGGCTGGCACTGCAGTTTCTGTTTCCGTCATATCAGTGAATTTGTATTTAAGATGAAAGCTTACAGCCACTACGATCGAGTGCGATTCCCTCATTACTTAAACCCTGACCGGATTCAGAACGTGATATGCAAAGGTGCTGACTTATTCGACATGCTTCCTGAAGAGTATACATTTAAGGAGATCATCGGAAAACTAGGACCAATTCCTCATTCTTATTCAGCAGTGCATCTTCCTGCATTTTTGTTAAATAATGCCGATAGATACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTGGCTGA

Protein sequence

>Msa1093200

MSEEYYNSKKTDDICDDVCGQQGTPAALSMSRLRCILRGLDFKTYIFMFVIIPIGVLFIYLHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMESLCKLHGWGIRESPRRVFDAVLFSNEVDMLTIRWKEMYPYVSQYILLESNSTFTGFVKPLIFASNRDKFKFVEPRLTYGTIGGRFRRKENPFIEEARQRVVLDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILHLQLRNYLYSFEFFLDNKSWRGSIHRYQTDKTRYAHYRQSDLLLSDAGWHCSFCFRHISEFVFKMKAYSHYDRVRFPHYLNPDRIQNVICKGADLFDMLPEEYTFKEIIGKLGPIPHSYSAVHLPAFLLNNADRYKYLLPGNCRRESG*