AlfalfaGEDB | MS.gene067978

M. sativa cultivar XinJiangDaYe / MS.gene067978

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0006810 GO:0008150 GO:0015846 GO:0019808 GO:0042597 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0110165
PFAM: PF13343.9 PF13639.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067978.t1	XP_027192980.1	71	806	150	11	1	772	1	756	0.00E+00	1100.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067978.t1	Q7XLY8	46.9	81	42	1	690	770	160	239	7.8e-13	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067978.t1	A0A3Q7YGX1	71.0	806	150	11	1	772	1	756	0.0e+00	1100.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene067978	0.817879	2.62E-52	-1.69E-46
MS.gene049171	MS.gene067978	0.859169	4.98E-63	-1.69E-46
MS.gene049173	MS.gene067978	0.836456	9.26E-57	-1.69E-46
MS.gene049217	MS.gene067978	0.895311	1.08E-75	-1.69E-46
MS.gene049222	MS.gene067978	0.893673	5.05E-75	-1.69E-46
MS.gene049232	MS.gene067978	0.860826	1.58E-63	-1.69E-46
MS.gene049285	MS.gene067978	0.886714	2.69E-72	-1.69E-46
MS.gene049320	MS.gene067978	0.872306	3.52E-67	-1.69E-46
MS.gene049427	MS.gene067978	0.846035	2.80E-59	-1.69E-46
MS.gene049609	MS.gene067978	0.835338	1.78E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067978.t1	MTR_8g071820	96.198	526	19	1	1	526	1	525	0.0	1042
MS.gene067978.t1	MTR_8g071815	88.889	180	20	0	598	777	1	180	2.23e-109	331
MS.gene067978.t1	MTR_5g026730	54.795	146	56	6	601	738	2	145	2.55e-40	146
MS.gene067978.t1	MTR_5g026720	53.061	147	60	6	598	738	1	144	4.70e-38	139
MS.gene067978.t1	MTR_2g041200	39.394	132	68	5	616	741	33	158	1.42e-21	93.2
MS.gene067978.t1	MTR_4g093830	33.714	175	96	4	613	775	66	232	2.61e-17	84.7
MS.gene067978.t1	MTR_3g464780	37.705	122	66	2	647	766	92	205	4.98e-17	82.0
MS.gene067978.t1	MTR_8g089880	53.846	65	26	1	666	730	136	196	1.01e-16	81.6
MS.gene067978.t1	MTR_2g090905	38.298	94	55	2	643	734	26	118	1.13e-16	77.4
MS.gene067978.t1	MTR_4g120270	56.897	58	25	0	680	737	97	154	1.88e-16	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067978.t1	AT1G31410	58.980	451	175	5	82	525	43	490	0.0	544
MS.gene067978.t1	AT5G17600	36.709	158	79	4	619	759	65	218	3.14e-17	84.7
MS.gene067978.t1	AT1G04360	30.345	145	79	5	609	733	38	180	2.42e-16	82.4
MS.gene067978.t1	AT2G27940	45.455	66	31	1	666	731	124	184	2.96e-16	79.3
MS.gene067978.t1	AT5G05280	34.127	126	72	2	608	729	37	155	3.15e-16	77.8
MS.gene067978.t1	AT2G17730	52.727	55	26	0	677	731	186	240	3.96e-16	79.3
MS.gene067978.t1	AT3G03550	50.685	73	32	1	666	738	142	210	8.66e-16	80.1
MS.gene067978.t1	AT1G35330	33.824	136	72	3	614	736	48	178	1.98e-15	79.0
MS.gene067978.t1	AT5G66070	50.000	56	28	0	674	729	163	218	2.04e-15	76.6
MS.gene067978.t1	AT5G66070	50.000	56	28	0	674	729	163	218	2.04e-15	76.6

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Find 229 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATCTGAGAAATGGA+AGG	0.613426	8.3:+31017439	MS.gene067978:CDS
AAACTTCCCTCTTCAGTGCT+CGG	0.575081	8.3:-31021155	None:intergenic
AAAGTCTGGAGCGAGTTTAT+GGG	0.428771	8.3:+31018846	MS.gene067978:CDS
AAATTGTAGGGGTTAGAGTT+AGG	0.325705	8.3:-31015663	None:intergenic
AACACGCATCCGAACAATCG+CGG	0.626505	8.3:+31021105	MS.gene067978:CDS
AAGATGTGGAAGGTCAAGAA+TGG	0.565634	8.3:+31017411	MS.gene067978:CDS
AATTACAATTCTCCAATCAC+CGG	0.574945	8.3:+31015715	MS.gene067978:CDS
AATTAGTATCACACCAAATT+TGG	0.193507	8.3:-31021024	None:intergenic
AATTGAGCCAATAAAAGATG+TGG	0.585559	8.3:+31017397	MS.gene067978:CDS
AATTGTAATTGAGATTTGAG+AGG	0.576588	8.3:-31015702	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTATCTGAGAAATGGA+AGG	+	chr8.3:31017439-31017458	MS.gene067978:CDS	30.0%
AACAAAGTGCACAAAACAAA+TGG	-	chr8.3:31017540-31017559	None:intergenic	30.0%
AATCACCAATTTGTGATTTG+TGG	+	chr8.3:31016771-31016790	MS.gene067978:intron	30.0%
AATTACAATTCTCCAATCAC+CGG	+	chr8.3:31015715-31015734	MS.gene067978:CDS	30.0%
AATTGAGCCAATAAAAGATG+TGG	+	chr8.3:31017397-31017416	MS.gene067978:CDS	30.0%
ACAAATGTGAAGAACATAGT+AGG	-	chr8.3:31016443-31016462	None:intergenic	30.0%
ACAATGCATAATATATGCAG+GGG	-	chr8.3:31016372-31016391	None:intergenic	30.0%
ACACCTTTAATACAAAGTGT+CGG	-	chr8.3:31016498-31016517	None:intergenic	30.0%
ACTGAAAATGAGTTGCAAAA+TGG	+	chr8.3:31021485-31021504	MS.gene067978:CDS	30.0%
ATATATTCATGTCTCCTCTA+GGG	+	chr8.3:31019827-31019846	MS.gene067978:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	31015585	31021529	31015585	ID=MS.gene067978
chr8.3	mRNA	31015585	31021529	31015585	ID=MS.gene067978.t1;Parent=MS.gene067978
chr8.3	exon	31015585	31015939	31015585	ID=MS.gene067978.t1.exon1;Parent=MS.gene067978.t1
chr8.3	CDS	31015585	31015939	31015585	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31016819	31016976	31016819	ID=MS.gene067978.t1.exon2;Parent=MS.gene067978.t1
chr8.3	CDS	31016819	31016976	31016819	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31017212	31017460	31017212	ID=MS.gene067978.t1.exon3;Parent=MS.gene067978.t1
chr8.3	CDS	31017212	31017460	31017212	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31018163	31018297	31018163	ID=MS.gene067978.t1.exon4;Parent=MS.gene067978.t1
chr8.3	CDS	31018163	31018297	31018163	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31018384	31018566	31018384	ID=MS.gene067978.t1.exon5;Parent=MS.gene067978.t1
chr8.3	CDS	31018384	31018566	31018384	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31018718	31018879	31018718	ID=MS.gene067978.t1.exon6;Parent=MS.gene067978.t1
chr8.3	CDS	31018718	31018879	31018718	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31019132	31019468	31019132	ID=MS.gene067978.t1.exon7;Parent=MS.gene067978.t1
chr8.3	CDS	31019132	31019468	31019132	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31019660	31019803	31019660	ID=MS.gene067978.t1.exon8;Parent=MS.gene067978.t1
chr8.3	CDS	31019660	31019803	31019660	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31019848	31019912	31019848	ID=MS.gene067978.t1.exon9;Parent=MS.gene067978.t1
chr8.3	CDS	31019848	31019912	31019848	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1
chr8.3	exon	31020984	31021529	31020984	ID=MS.gene067978.t1.exon10;Parent=MS.gene067978.t1
chr8.3	CDS	31020984	31021529	31020984	ID=cds.MS.gene067978.t1;Parent=MS.gene067978.t1

Gene Sequence

>MS.gene067978

ATGGCTGTGTTGCTGCAAACACATAACACACTCTCTCTACCTTCACCACGTCACCCTTATCTCTTCGCAATTCGAAACCCTAACTCTAACCCCTACAATTTTCTAATCCCCACCTCACCTCTCAAATCTCAATTACAATTCTCCAATCACCGGAATCCAACACACCGTTCGCCGGCGTCACCTGTCTCCGCTTCCCGCCGGGAACCTTCAGATACGACGCCACTCAACTTGCTGCCCCGTGCTCTTGTCCGCGTCACTGTCTCTGTCGCGCTGTTTCTCTGCTGTGGCATTCGCGCTTGTTCCGCTTCTTTGCCTCCTCTAACCAACGTGGTTCAGCAGGAACAAACTATTCAAGGTTTTCAACATTTTTTTTATTATTAGATGATTCAGTAGCTTCTAGATTGAGATTATATGCTATTGATACTTTTTACCAAAGGGAAATATAAGCTTCTATTAATTAGGAATATGCAGAAGAAATGAAAATTTGGCATATGACTAGGTCCAAGTTTTAGATGTTATGTTGTTCTCTTTCAAATATCTTTGAATTAAGACCCAATTTGATCCTCATAATTTGTTCGCGGTCCAATTTAGTACACGAAAACAATGTATACCCCAATTAGTACTCATTATAACTGAGGGACCGATTTGTGCCTGTATTAAAATGCCAGGCTGCAAGTAAATTGTGAGGGGTCATAATGGTTTTTTTTTTTTGTCAAGTAGCCAGTGTCTGGAGCTAACACATTTTAAATGTGGAGAAGTGGGGTGTCCGGGGTTCGAAACCCGGCCCCTGCATATATTATGCATTGTCCCTATCAACTGAGCTAAGCTCATCGGGACAATGACTCTTTTTTCTTTCCTACTATGTTCTTCACATTTGTTAACTATGTTCTTTATTTTATAGTATGTTGCACCGACACTTTGTATTAAAGGTGTGTCAATGTTTGACATGTACCAATGTCTGACACACGTGTTACATTTAATCAGTTACATTTTTATATTAATACCAGTTTTTACTTGTCGGTGCCATGTTCAGTGTTCATGTATGTGTCACTGTTTCCTCTAGTCAATGCAATTTGAAATTTGTGTTCATTTTTAATGGTTTTGATTATTAATATTACCAGTTTAGTTATCTGGTAATGAAGAGCAGGATTTGCTGCTGTCATAAAATGGTGTGTGTGGTCACAGGAATCACCAATTTGTGATTTGTGGTTTTATATTTTATGTATGATTGCAGATGATAATGATGCAAGGAAACATGATGCCAATGGAAATATAGATGTAGATAAGGAATTAGAAGCATCTTTTAATGCTTGGAAGTCTAAAACGTATGCATTGACAGTTCCTTTGAAAGTTGTTGCTTTGCGTGGCTCTATTCCTCCTTCATGGATCAAGGTCTGTGACACACGTTGCTTAAATTGTTTTGCGTGGTCTTTTAAAAAAAAAAATTTGATCGTTGATTGCAATTTCTGCTGTCTCTCACTAGCTTGTTGGGAGCAGTTGTTCTGTTTTCTGCTCATACTGGAAGTTCCTCTGATTCTGTGATGTCATTTAAAGCAACTTATAGTTGATAATAGATTTCCATTAAATTATTTTATAGATTTTCATGTGAAATTTTCTTCAATTGTAGGATTTCATAAATTCTCAAGGGAATAGAATGAAATTTAAGGTGAATTATTATGCAACTCTCGAGAATATCTTCTCTGATCTATCCATTCCCTTTACCAAAGGTGATCATGTCCCAACAACTGCTTTGGCAGCTGATATTGTCGGTATTGGTGACTCGTGGCTCAAATTTGCCGTTAAAAAAGCTATAATTGAGCCAATAAAAGATGTGGAAGGTCAAGAATGGTTTAAAAACTTATCTGAGAAATGGAAGGTAACATTATATTTTTGTTTTATATTTCTTCTCCTTGGAAATTGTGTCTCATGATAGTCTTCTTTTACGATGAAAACCATTTGTTTTGTGCACTTTGTTCAGCTTGATTTTGGTGCATCTTCTCTCATGATTATGTGTATGAATTTTTTATTTTTTTTTTACGAAAAACAAATAGGTGCAAACACAGACATCATAGTTATCTGAGTGCTTGTCTGCCAAGGGGCCATGTTAGATACTGTAATTTTGTACGTGTGACAATTTAAAATGAGTTATTATTCATAATGATATCTCGCTTACATGTAAAGTGACATCACTACACGTGCTTCTTTTTACAAAAACATAGTTTTACTGAATCACTAACATGTTTTGTTTTCCCTCATGTTGTAAAGTGTTAGCACTACGGGTGCATGAGTGTGGGTTCGAACCCGTGTCACCTCCTCCCCCTCCCCGTATATCTGTGTATGCGTTGGTCACTAGGCCAATAGCAAAAAATAAATAAATTAACACCTTGTCAGCAAAATAGATGGATTTTACTGCTGAAAATGATAACATAACATCACAGTGAGAATCTGGTGTATGTATCCCATTGGTTCATGTTGAGCATGACCAAGATTAATTATAACATATCCATTGGTTAGTTATTTTCCCTCGGAAATGTTTGTTGTTGATAGTATGATATTACATTCCCTGACAAGGTTCCAGGTATATCTACGCAGGAACTGTGAGGGAGAAGTGGACCCTGAAGGTGATATATGGGCTGCCCCATATCGATGGGGATGCATGGTAATAGCATACAAGACAAATAGTTTTCAAAAGCATAAGTTGGCTCCAATAGAGGTATGCTGTTTTCTATTAGACCTTGTAAAACTCCGGTGAAGCATAAATCAGATATTTAGATTAGATTATTTACACTGGAATTGCAGGACTGGGCAGATCTGTGGCGGCCTGATCTTGCAGGGAGGATTTCCATGGTGGACTCTCCTAGAGAAGTTGTCGGTGCAGTCTTAAAGTATATGGGGGCTTCCTATAATGCAAATGACATCAATTTGGAAGTTAATGGTGGGAGAGATGCTGTTAAACATAATTTAGCATTGCTTGCAAAACAGGTACTATTACCAGATGATCTCTGAACTTTTGATGTTGCTTTGATTGAAATAGAGGAGCAAATGCATAAAAGTTTAGTTGACAGAACAGAGAATTTTCGATCCTATTTTTCCAAATTTTAAATATTAAGTTACTACTTTTATGTATTTCTAGGTTCGACTATTTGATAGTGAAAACTATCTAAAGGCTTTTGGAGTTGGAGATGTGTGGGTAGCTGTTGGATGGAGTAGTGATATTATTCCTGTTGCTAAACGGATGTCTAATGTTGCAGTTATTGTTCCAAAGTCTGGAGCGAGTTTATGGGCAGATCTTTGGGTATGCCTCTCATTGCTATCTTGTTTTAGAGGATTTGTTATTTCTTTGGTTAATGATTTCGAGGAATCATATGTGGAATGATATAATATAAAGCCACCCTTGTAACAGGAAATTGTTGATAATTACTCAAATGGGATTCAGATATTTACACATATTTATTGATAATAGACATGAATTTATCTCCTCTTACACACTAGACAATGACCTTTTTCAACCTCTTTTTTTTTTGCTTTTTTGTTTTGTTTTCTCTAGGCAATTCCTGCTGCCTCAAGGATTCAAACAAGTCGGATTGGTGGGCGCGTCAGGGGTCCATCCCCATTAATTCATCAGTGGATAGAGTTTTGTCTGCAATCTGCCAGAGCACTGCCCTTTAAGCAGGAGGTGATCCCAGGTGCCTCTCCCCCTCTTCTTCAAGGTCATTCCACCAATGTGCCTTTGGAGTTAACTAAGGGTAGGCCAAGGCTAGACACCAATCTCATTGATGGAGCACCACCATCTGACATTTTAGAAAGGTGTGAATTTCTAGAGCCATTATCTAATTCCGCAGAATCCGATTACCACTGGTTGCTTGCCTCAATCCAGGAACCTGGTAATGGATTGATACACAAAATGCGTCAGTATATCTCATCATTGGTTACATAGTCTGGGCGGTCTAATTCAAAGCTGACTTGCGTAATGAGCTATTGGGCTGTCGAATACATACAAAGGATATGTGATTTTACGATTTGAATGACCAGAAACTTCAAAGGTTGACTGATGTTTTAACATTTGTGGAGGTAGAATTTCAAGATTATTGGGTAGTGAAAAGCAACAATAAGTCGTTAACGCTGGAGCTGTACGAGTTAGCTGCTGATTCTGCCTTCCATATTGTTGAACCTTCAAAATGTTCTGCAAAATTCATCCGAAAATTTGATTTATGTATTAGTAGGTGAAGTAATTTGTTTGTCATATATTCATGTCTCCTCTAGGGGATTTATTGTTTGTACAAATCAACATGAAGCAAATATTAGACAAGCTCTTAAAGCTGGGTAAAGTGAGTGATTCTTTTTGCCAATCAACATGGCTTTTGAATACCATCTTTGACCTTGCCCTTGTTCTTGATCCTCGCCTTGGGAAGTTTTGTTCCCTTATATATATATATATATCCTTGCAAATCCTCACGGTCCCCACGGGAACTCCATCAAACATAAAAAAGAATAATCAAATTTCTATTATTAACAAATAAGGATTAAAAAGTATAAAATTTCACCATAGAACAAATAAAATATTAAGCCATTATTGTGAGTCTTGTGACAACAATAAACATAAACATAAAAAAGAAATTTATGCATGTGTGAAATCCTTGTTCCAGTCCCCAAACTATCATGGGAGAGACTTCCTAGTTTCTCCCACCATGTTTCCGCAGGAAAAATTCTCTATCTATGGGGTCGGAATGAGACAATCATTCACTAGGATCCTCATTTATGGATGCAAATTGACATCCATGAAATCTATGTATTCTTCCTATATTCTAAATTTTTTGTTAGAATCTTTATCACAGTTATTATTTCACTAGTTTAAAATAAGAAACAGAAGGATGCATTTTTATAATATGTGCAAAATTAGGTGATAAGGGATTATTATTTTTCCACTGTTAATTGGTTACATACACCCTCCAGTCATATGCAACAAACTAATTTTTTGAATAATTGAATAACCGATGTAATATAAAAATTATTTTTTAGAAGCATTTAATAATTGATATAATATAAACCAAATACATCAGTTACTCAATGATTCAAAAAAATCTTCTTAAAATAGTGATATGAGAATGTATTCTTTATCTATATCTACAAATTAAGTAAAGCTTTTTTTTTTTTTTGAAAGAAAATTAAGTAAAACTTAAAACCTCATTATTGCATATCTCATACTAGTTTAGTTATTAGCAAATAAAAAATATATCTATCTTATAGCTTTCACCGTCACGATTTAAGTGTGAAGAGAATGATTGATATGAACGATAAATGTAGCTAAGCCATTGCTTTGGCCGGCTGTGTCATCTTTATGTTTTACTAATTTCTTCTATCAATACAAAATCATTGTCACATTTCTCTCTCACACACAGTTTATGGCTGATGATGGTGATTATCAACCTTTGCTCGGTACCAAATTTGGTGTGATACTAATTGCCATGGGTTCAGCTAGCTTTGTGGTTACAATATACCATCTCATATTCATTTGCTGCAAACACGCATCCGAACAATCGCGGCAGCATGAGCAACCGTTGACACAAACGCCGAGCACTGAAGAGGGAAGTTTGGTGTCACATCAGATTCCATCCTACAAGTATGAGAAGAAGAAAAAGAATGATGACAATGATGATGATTGTGTGACTTGTGCTGTGTGCTTAGGAGACTTTGAGGAAGGTGAGGAGTTGAGGACTATGCCTTCTTGCATGCACTCTTTCCACGTACCATGCATAGATATGTGGCTCCTTTCACATCTCAATTGTCCTGTTTGCCGTGCTGATGCCACGCCCTCCCCGGTGGTTCCCCACTGTTTACCGGAGGTTAGGTCCGCCGAGGTGAATGTTGATCATGGCGTAAATACGGTGGAGATAGTTGTCACTGAAAATGAGTTGCAAAATGGGTTACACATGGTCCGATCCTAA

Protein sequence

>MS.gene067978.t1

MAVLLQTHNTLSLPSPRHPYLFAIRNPNSNPYNFLIPTSPLKSQLQFSNHRNPTHRSPASPVSASRREPSDTTPLNLLPRALVRVTVSVALFLCCGIRACSASLPPLTNVVQQEQTIQDDNDARKHDANGNIDVDKELEASFNAWKSKTYALTVPLKVVALRGSIPPSWIKDFINSQGNRMKFKVNYYATLENIFSDLSIPFTKGDHVPTTALAADIVGIGDSWLKFAVKKAIIEPIKDVEGQEWFKNLSEKWKVYLRRNCEGEVDPEGDIWAAPYRWGCMVIAYKTNSFQKHKLAPIEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGASYNANDINLEVNGGRDAVKHNLALLAKQVRLFDSENYLKAFGVGDVWVAVGWSSDIIPVAKRMSNVAVIVPKSGASLWADLWAIPAASRIQTSRIGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPPLLQGHSTNVPLELTKGRPRLDTNLIDGAPPSDILERCEFLEPLSNSAESDYHWLLASIQEPEFQDYWVVKSNNKSLTLELYELAADSAFHIVEPSKCSAKFIRKFDLCIRDLLFVQINMKQILDKLLKLGKFMADDGDYQPLLGTKFGVILIAMGSASFVVTIYHLIFICCKHASEQSRQHEQPLTQTPSTEEGSLVSHQIPSYKYEKKKKNDDNDDDCVTCAVCLGDFEEGEELRTMPSCMHSFHVPCIDMWLLSHLNCPVCRADATPSPVVPHCLPEVRSAEVNVDHGVNTVEIVVTENELQNGLHMVRS