Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46979.t1 | XP_003600159.1 | 98.3 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 3.20E-227 | 797.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46979.t1 | Q56YA5 | 85.8 | 401 | 57 | 0 | 1 | 401 | 1 | 401 | 1.5e-206 | 719.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46979.t1 | G7J013 | 98.3 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 2.3e-227 | 797.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene46979 | 0.83107 | 2.06E-55 | -1.69E-46 |
| MS.gene049173 | MS.gene46979 | 0.844154 | 9.01E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene46979 | 0.861776 | 8.09E-64 | -1.69E-46 |
| MS.gene049222 | MS.gene46979 | 0.884041 | 2.69E-71 | -1.69E-46 |
| MS.gene049232 | MS.gene46979 | 0.831755 | 1.39E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene46979 | 0.909244 | 7.06E-82 | -1.69E-46 |
| MS.gene049320 | MS.gene46979 | 0.909847 | 3.62E-82 | -1.69E-46 |
| MS.gene049369 | MS.gene46979 | 0.838499 | 2.77E-57 | -1.69E-46 |
| MS.gene04938 | MS.gene46979 | 0.820305 | 7.36E-53 | -1.69E-46 |
| MS.gene04939 | MS.gene46979 | 0.862898 | 3.66E-64 | -1.69E-46 |
| MS.gene049427 | MS.gene46979 | 0.848539 | 5.75E-60 | -1.69E-46 |
| MS.gene049609 | MS.gene46979 | 0.855928 | 4.54E-62 | -1.69E-46 |
| MS.gene049614 | MS.gene46979 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene46979 | 0.863543 | 2.31E-64 | -1.69E-46 |
| MS.gene049805 | MS.gene46979 | 0.842483 | 2.52E-58 | -1.69E-46 |
| MS.gene049828 | MS.gene46979 | 0.826028 | 3.40E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene46979 | 0.831408 | 1.70E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene46979 | 0.914813 | 1.23E-84 | -1.69E-46 |
| MS.gene050165 | MS.gene46979 | 0.913409 | 6.37E-84 | -1.69E-46 |
| MS.gene050323 | MS.gene46979 | 0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene46979 | 0.88641 | 3.51E-72 | -1.69E-46 |
| MS.gene050444 | MS.gene46979 | 0.840282 | 9.55E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene46979 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene46979 | 0.879989 | 7.94E-70 | -1.69E-46 |
| MS.gene050518 | MS.gene46979 | 0.89647 | 3.58E-76 | -1.69E-46 |
| MS.gene050520 | MS.gene46979 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene46979 | 0.826448 | 2.70E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene46979 | 0.832589 | 8.67E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene46979 | 0.823007 | 1.75E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene46979 | 0.901606 | 2.26E-78 | -1.69E-46 |
| MS.gene050675 | MS.gene46979 | 0.901584 | 2.31E-78 | -1.69E-46 |
| MS.gene050699 | MS.gene46979 | 0.884711 | 1.52E-71 | -1.69E-46 |
| MS.gene050747 | MS.gene46979 | 0.846972 | 1.55E-59 | -1.69E-46 |
| MS.gene050767 | MS.gene46979 | 0.835614 | 1.51E-56 | -1.69E-46 |
| MS.gene050770 | MS.gene46979 | 0.838022 | 3.68E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene46979 | 0.888139 | 7.69E-73 | -1.69E-46 |
| MS.gene05080 | MS.gene46979 | 0.849938 | 2.34E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene46979 | 0.819248 | 1.28E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene46979 | 0.819587 | 1.07E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene46979 | 0.845518 | 3.86E-59 | -1.69E-46 |
| MS.gene050904 | MS.gene46979 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene46979 | 0.859456 | 4.09E-63 | -1.69E-46 |
| MS.gene050986 | MS.gene46979 | 0.910883 | 1.14E-82 | -1.69E-46 |
| MS.gene05100 | MS.gene46979 | 0.853831 | 1.84E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene46979 | 0.888457 | 5.81E-73 | -1.69E-46 |
| MS.gene051317 | MS.gene46979 | 0.857252 | 1.85E-62 | -1.69E-46 |
| MS.gene051551 | MS.gene46979 | 0.837916 | 3.92E-57 | -1.69E-46 |
| MS.gene051617 | MS.gene46979 | 0.871705 | 5.58E-67 | -1.69E-46 |
| MS.gene051810 | MS.gene46979 | 0.936425 | 1.77E-97 | -1.69E-46 |
| MS.gene051858 | MS.gene46979 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene46979 | 0.847457 | 1.14E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene46979 | 0.830394 | 3.01E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene46979 | 0.882989 | 6.55E-71 | -1.69E-46 |
| MS.gene052290 | MS.gene46979 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene46979 | 0.872819 | 2.37E-67 | -1.69E-46 |
| MS.gene052421 | MS.gene46979 | 0.809144 | 2.19E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene46979 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene46979 | 0.810519 | 1.11E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene46979 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene46979 | 0.879253 | 1.45E-69 | -1.69E-46 |
| MS.gene052870 | MS.gene46979 | 0.844769 | 6.16E-59 | -1.69E-46 |
| MS.gene052872 | MS.gene46979 | 0.854561 | 1.13E-61 | -1.69E-46 |
| MS.gene052916 | MS.gene46979 | 0.845031 | 5.23E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene46979 | 0.835669 | 1.47E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene46979 | 0.831893 | 1.29E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene46979 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene46979 | 0.823593 | 1.27E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene46979 | 0.85861 | 7.32E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene46979 | 0.900371 | 7.83E-78 | -1.69E-46 |
| MS.gene053286 | MS.gene46979 | 0.90003 | 1.10E-77 | -1.69E-46 |
| MS.gene053322 | MS.gene46979 | 0.836885 | 7.20E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene46979 | 0.805093 | 1.58E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene46979 | 0.807134 | 5.86E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene46979 | 0.8775 | 5.98E-69 | -1.69E-46 |
| MS.gene053632 | MS.gene46979 | 0.868052 | 8.70E-66 | -1.69E-46 |
| MS.gene053824 | MS.gene46979 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene46979 | 0.802751 | 4.84E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene46979 | 0.841312 | 5.13E-58 | -1.69E-46 |
| MS.gene054376 | MS.gene46979 | 0.818071 | 2.37E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene46979 | 0.829032 | 6.46E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene46979 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene46979 | 0.880839 | 3.94E-70 | -1.69E-46 |
| MS.gene054642 | MS.gene46979 | 0.914772 | 1.29E-84 | -1.69E-46 |
| MS.gene05470 | MS.gene46979 | 0.82722 | 1.76E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene46979 | 0.890764 | 7.33E-74 | -1.69E-46 |
| MS.gene05505 | MS.gene46979 | 0.85012 | 2.08E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene46979 | 0.814878 | 1.23E-51 | -1.69E-46 |
| MS.gene055212 | MS.gene46979 | 0.836932 | 7.00E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene46979 | 0.819255 | 1.28E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene46979 | 0.876022 | 1.94E-68 | -1.69E-46 |
| MS.gene055397 | MS.gene46979 | 0.881843 | 1.71E-70 | -1.69E-46 |
| MS.gene055412 | MS.gene46979 | 0.813054 | 3.11E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene46979 | 0.870595 | 1.30E-66 | -1.69E-46 |
| MS.gene055502 | MS.gene46979 | 0.877409 | 6.43E-69 | -1.69E-46 |
| MS.gene055577 | MS.gene46979 | 0.852845 | 3.53E-61 | -1.69E-46 |
| MS.gene055636 | MS.gene46979 | 0.831075 | 2.05E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene46979 | 0.836831 | 7.43E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene46979 | 0.848544 | 5.73E-60 | -1.69E-46 |
| MS.gene055722 | MS.gene46979 | 0.860208 | 2.42E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene46979 | 0.856431 | 3.23E-62 | -1.69E-46 |
| MS.gene055750 | MS.gene46979 | 0.84898 | 4.34E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene46979 | 0.863461 | 2.45E-64 | -1.69E-46 |
| MS.gene055776 | MS.gene46979 | 0.8533 | 2.62E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene46979 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene05592 | MS.gene46979 | 0.848391 | 6.31E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene46979 | 0.857132 | 2.01E-62 | -1.69E-46 |
| MS.gene055956 | MS.gene46979 | -0.803827 | 2.90E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene46979 | 0.83015 | 3.45E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene46979 | 0.85198 | 6.23E-61 | -1.69E-46 |
| MS.gene056449 | MS.gene46979 | 0.847035 | 1.49E-59 | -1.69E-46 |
| MS.gene056487 | MS.gene46979 | 0.828918 | 6.88E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene46979 | 0.856616 | 2.85E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene46979 | 0.879255 | 1.45E-69 | -1.69E-46 |
| MS.gene056549 | MS.gene46979 | 0.817377 | 3.40E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene46979 | 0.847703 | 9.78E-60 | -1.69E-46 |
| MS.gene056657 | MS.gene46979 | 0.928073 | 4.83E-92 | -1.69E-46 |
| MS.gene05666 | MS.gene46979 | 0.803129 | 4.04E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene46979 | 0.843996 | 9.94E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene46979 | 0.847074 | 1.46E-59 | -1.69E-46 |
| MS.gene056898 | MS.gene46979 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene056903 | MS.gene46979 | 0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene056947 | MS.gene46979 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene46979 | 0.808354 | 3.23E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene46979 | 0.886177 | 4.29E-72 | -1.69E-46 |
| MS.gene057129 | MS.gene46979 | 0.864649 | 1.04E-64 | -1.69E-46 |
| MS.gene057246 | MS.gene46979 | 0.839684 | 1.37E-57 | -1.69E-46 |
| MS.gene057331 | MS.gene46979 | 0.863623 | 2.18E-64 | -1.69E-46 |
| MS.gene05735 | MS.gene46979 | 0.814119 | 1.81E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene46979 | 0.854771 | 9.86E-62 | -1.69E-46 |
| MS.gene057658 | MS.gene46979 | 0.800888 | 1.17E-48 | -1.69E-46 |
| MS.gene057831 | MS.gene46979 | 0.853142 | 2.90E-61 | -1.69E-46 |
| MS.gene05787 | MS.gene46979 | 0.808889 | 2.48E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene46979 | 0.817272 | 3.59E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene46979 | 0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene46979 | 0.854239 | 1.41E-61 | -1.69E-46 |
| MS.gene058323 | MS.gene46979 | 0.819092 | 1.39E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene46979 | 0.805323 | 1.41E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene46979 | 0.821349 | 4.23E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene46979 | 0.888492 | 5.63E-73 | -1.69E-46 |
| MS.gene058544 | MS.gene46979 | 0.846339 | 2.31E-59 | -1.69E-46 |
| MS.gene058719 | MS.gene46979 | 0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene46979 | 0.878721 | 2.23E-69 | -1.69E-46 |
| MS.gene058773 | MS.gene46979 | 0.882041 | 1.45E-70 | -1.69E-46 |
| MS.gene058838 | MS.gene46979 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene05883 | MS.gene46979 | 0.818016 | 2.44E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene46979 | 0.87783 | 4.59E-69 | -1.69E-46 |
| MS.gene059023 | MS.gene46979 | 0.850734 | 1.40E-60 | -1.69E-46 |
| MS.gene059029 | MS.gene46979 | 0.8747 | 5.50E-68 | -1.69E-46 |
| MS.gene059079 | MS.gene46979 | 0.842759 | 2.12E-58 | -1.69E-46 |
| MS.gene05913 | MS.gene46979 | 0.847796 | 9.22E-60 | -1.69E-46 |
| MS.gene059305 | MS.gene46979 | 0.829883 | 4.01E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene46979 | 0.835776 | 1.38E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene46979 | 0.819599 | 1.07E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene46979 | 0.804776 | 1.84E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene46979 | 0.905425 | 4.35E-80 | -1.69E-46 |
| MS.gene059711 | MS.gene46979 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene46979 | 0.885584 | 7.17E-72 | -1.69E-46 |
| MS.gene059756 | MS.gene46979 | 0.819981 | 8.73E-53 | -1.69E-46 |
| MS.gene059858 | MS.gene46979 | 0.839536 | 1.49E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene46979 | 0.885334 | 8.89E-72 | -1.69E-46 |
| MS.gene059902 | MS.gene46979 | 0.802783 | 4.76E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene46979 | 0.852654 | 4.01E-61 | -1.69E-46 |
| MS.gene060356 | MS.gene46979 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene46979 | 0.859404 | 4.23E-63 | -1.69E-46 |
| MS.gene060728 | MS.gene46979 | 0.823153 | 1.61E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene46979 | 0.872372 | 3.35E-67 | -1.69E-46 |
| MS.gene060778 | MS.gene46979 | 0.828924 | 6.86E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene46979 | 0.846937 | 1.59E-59 | -1.69E-46 |
| MS.gene060804 | MS.gene46979 | 0.847099 | 1.43E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene46979 | 0.825506 | 4.52E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene46979 | 0.845456 | 4.02E-59 | -1.69E-46 |
| MS.gene06092 | MS.gene46979 | 0.829549 | 4.84E-55 | -1.69E-46 |
| MS.gene060981 | MS.gene46979 | 0.807559 | 4.76E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene46979 | 0.860431 | 2.08E-63 | -1.69E-46 |
| MS.gene061041 | MS.gene46979 | 0.856011 | 4.29E-62 | -1.69E-46 |
| MS.gene061134 | MS.gene46979 | 0.837283 | 5.69E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene46979 | 0.857223 | 1.89E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene46979 | 0.856786 | 2.54E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46979.t1 | MTR_3g053890 | 98.254 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 0.0 | 811 |
| MS.gene46979.t1 | MTR_3g053890 | 97.778 | 360 | 8 | 0 | 1 | 360 | 1 | 360 | 0.0 | 731 |
| MS.gene46979.t1 | MTR_5g090070 | 80.798 | 401 | 77 | 0 | 1 | 401 | 1 | 401 | 0.0 | 687 |
| MS.gene46979.t1 | MTR_5g094410 | 67.164 | 402 | 79 | 6 | 1 | 401 | 1 | 350 | 0.0 | 520 |
| MS.gene46979.t1 | MTR_5g067370 | 65.087 | 401 | 82 | 5 | 1 | 401 | 1 | 343 | 1.01e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46979.t1 | AT2G13360 | 85.786 | 401 | 57 | 0 | 1 | 401 | 1 | 401 | 0.0 | 731 |
| MS.gene46979.t1 | AT2G13360 | 85.786 | 401 | 57 | 0 | 1 | 401 | 1 | 401 | 0.0 | 731 |
| MS.gene46979.t1 | AT2G13360 | 85.786 | 401 | 57 | 0 | 1 | 401 | 1 | 401 | 0.0 | 731 |
Find 111 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCATTCAGCTTCTTTA+TGG | 0.134580 | 3.1:-31523578 | MS.gene46979:CDS |
| CAACATCGACATTAAATTTA+AGG | 0.143214 | 3.1:+31524597 | None:intergenic |
| CAACTATTGGGTTGTCTTGC+TGG | 0.175642 | 3.1:-31522155 | MS.gene46979:CDS |
| TGTTGGTTACCCAGTAAAAT+TGG | 0.196012 | 3.1:-31522111 | MS.gene46979:CDS |
| TTTGAAGCTTCAATGGCTTT+AGG | 0.239169 | 3.1:+31523683 | None:intergenic |
| TCTAACTGTGGCCAAGTTAT+TGG | 0.247414 | 3.1:+31524454 | None:intergenic |
| TCTACAAGATGGGAACTTAT+TGG | 0.275033 | 3.1:-31523610 | MS.gene46979:CDS |
| TTGAAGCTTCAATGGCTTTA+GGG | 0.275233 | 3.1:+31523684 | None:intergenic |
| AACGATAGTCCTCGTTGTTT+CGG | 0.283890 | 3.1:+31525743 | None:intergenic |
| CTTTCCCTTCCTACTGGTAT+AGG | 0.305469 | 3.1:-31523722 | MS.gene46979:CDS |
| GGGAAGATGGATTATGTTAA+TGG | 0.310016 | 3.1:-31525835 | None:intergenic |
| TTCCCATCTTGTAGAACTTC+AGG | 0.327105 | 3.1:+31523618 | None:intergenic |
| CCAGCCCTCCTCCTTGTTGA+TGG | 0.337800 | 3.1:-31523824 | MS.gene46979:CDS |
| AAAGAAAACTCGAAGTGATT+TGG | 0.339222 | 3.1:+31523655 | None:intergenic |
| TTGGCCAATTCAGTTTGCTT+TGG | 0.339533 | 3.1:-31524637 | MS.gene46979:CDS |
| TGGCCAATTCAGTTTGCTTT+GGG | 0.347985 | 3.1:-31524636 | MS.gene46979:CDS |
| CGTATTGTATCTTTCGTGAT+TGG | 0.350211 | 3.1:-31524656 | MS.gene46979:CDS |
| ATTGCAAGGCACAATCGTTT+AGG | 0.351182 | 3.1:-31523506 | MS.gene46979:CDS |
| TTCGTCAGAGCTGGAATTGC+GGG | 0.353494 | 3.1:+31525718 | None:intergenic |
| TCCTACTGGTATAGGATTTG+TGG | 0.358816 | 3.1:-31523714 | MS.gene46979:CDS |
| AGAAACCATCTCTTTGTTCC+AGG | 0.369723 | 3.1:-31525805 | MS.gene46979:CDS |
| ACGGCGCTGAAGTTGTTAGA+AGG | 0.375356 | 3.1:-31523019 | MS.gene46979:CDS |
| TACAATTTGAGCTTAGGTTT+GGG | 0.376409 | 3.1:-31522984 | MS.gene46979:CDS |
| ATATTCCTCTCATTCCTTCA+AGG | 0.379866 | 3.1:-31522049 | MS.gene46979:CDS |
| TGATTCTGCACACACTATAA+AGG | 0.387046 | 3.1:-31524516 | MS.gene46979:CDS |
| TTGGTTCAGGTACCGGTGCT+TGG | 0.388560 | 3.1:-31524715 | MS.gene46979:intron |
| ATACAATTTGAGCTTAGGTT+TGG | 0.393748 | 3.1:-31522985 | MS.gene46979:CDS |
| AAAAGATACAATTTGAGCTT+AGG | 0.398290 | 3.1:-31522990 | MS.gene46979:CDS |
| GTTGTTCCTCCTTACATTGA+CGG | 0.400403 | 3.1:-31523038 | MS.gene46979:CDS |
| CAACCCAAAGCAAACTGAAT+TGG | 0.402256 | 3.1:+31524633 | None:intergenic |
| GGAGTAGATGTGGCCATAAC+TGG | 0.407058 | 3.1:-31523758 | MS.gene46979:CDS |
| ACAAAGAGATGGTTTCTTCC+TGG | 0.409728 | 3.1:+31525811 | None:intergenic |
| ACATACCGGACCAGGTCATT+CGG | 0.414184 | 3.1:-31525774 | MS.gene46979:CDS |
| CATACCGGACCAGGTCATTC+GGG | 0.415229 | 3.1:-31525773 | MS.gene46979:CDS |
| TTGGGACTAAACAAAGTTGC+TGG | 0.415993 | 3.1:-31522966 | MS.gene46979:CDS |
| ACCTGGTCCGGTATGTTAAC+CGG | 0.419216 | 3.1:+31525781 | None:intergenic |
| TGGTTCAGGTACCGGTGCTT+GGG | 0.420179 | 3.1:-31524714 | MS.gene46979:intron |
| TCCGGTATGTTAACCGGCCC+TGG | 0.422439 | 3.1:+31525787 | None:intergenic |
| CGATTTCCGTATGGACGAAT+GGG | 0.433716 | 3.1:-31523780 | MS.gene46979:CDS |
| TTTGAAGAATTGCACACAAA+AGG | 0.438210 | 3.1:-31523093 | MS.gene46979:CDS |
| CATGTAACTCAAATCCTTGA+AGG | 0.438228 | 3.1:+31522035 | None:intergenic |
| GTTGGTTACCCAGTAAAATT+GGG | 0.446538 | 3.1:-31522110 | MS.gene46979:CDS |
| AGCTGAATGGAAGGAGTGTA+TGG | 0.458223 | 3.1:+31523587 | None:intergenic |
| TAAATTTAATGTCGATGTTG+TGG | 0.462439 | 3.1:-31524594 | MS.gene46979:CDS |
| ACGGAAATCGAGAGCACAAA+TGG | 0.462702 | 3.1:+31523793 | None:intergenic |
| CCAGTAGTAGGGATAAGAAA+TGG | 0.469745 | 3.1:+31525646 | None:intergenic |
| CGTACAACAATACCAGTAGT+AGG | 0.470380 | 3.1:+31525634 | None:intergenic |
| CCATTTCTTATCCCTACTAC+TGG | 0.470967 | 3.1:-31525646 | MS.gene46979:intron |
| CAGACTTGCTGTGGAGGCAT+GGG | 0.471086 | 3.1:-31523117 | MS.gene46979:CDS |
| ACTTCAGCGCCGTCAATGTA+AGG | 0.475994 | 3.1:+31523029 | None:intergenic |
| GCCACAGTTAGAAAACTTCT+CGG | 0.483622 | 3.1:-31524443 | MS.gene46979:intron |
| GGCTTTCTGAGAACCAGTTA+TGG | 0.484234 | 3.1:+31523745 | None:intergenic |
| CCATCTCTTTGTTCCAGGGC+CGG | 0.485720 | 3.1:-31525800 | MS.gene46979:CDS |
| ATTGGGTTGTCTTGCTGGTG+TGG | 0.485766 | 3.1:-31522150 | MS.gene46979:CDS |
| TCCAGGGCCGGTTAACATAC+CGG | 0.489689 | 3.1:-31525788 | MS.gene46979:CDS |
| AACTGGTGTCACCAATAACT+TGG | 0.495827 | 3.1:-31524465 | MS.gene46979:CDS |
| CCATCAACAAGGAGGAGGGC+TGG | 0.501743 | 3.1:+31523824 | None:intergenic |
| GGCTCATCGCCCGAATGACC+TGG | 0.502526 | 3.1:+31525764 | None:intergenic |
| CGATGTTGTGGAAAGTGAAT+GGG | 0.504080 | 3.1:-31524582 | MS.gene46979:CDS |
| TCGATTTCCGTATGGACGAA+TGG | 0.508249 | 3.1:-31523781 | MS.gene46979:CDS |
| ACAGACTTGCTGTGGAGGCA+TGG | 0.510945 | 3.1:-31523118 | MS.gene46979:intron |
| ATCGCCCGAATGACCTGGTC+CGG | 0.513985 | 3.1:+31525769 | None:intergenic |
| AAAGCCCTTTCCCTTCCTAC+TGG | 0.518469 | 3.1:-31523728 | MS.gene46979:CDS |
| ACTAAACAAAGTTGCTGGAA+AGG | 0.522582 | 3.1:-31522961 | MS.gene46979:CDS |
| TCGATGTTGTGGAAAGTGAA+TGG | 0.525669 | 3.1:-31524583 | MS.gene46979:CDS |
| AAGACCATAAAGAAGCTGAA+TGG | 0.527183 | 3.1:+31523574 | None:intergenic |
| CAAGGAGGAGGGCTGGATGT+TGG | 0.529269 | 3.1:+31523831 | None:intergenic |
| CTACTCCCCATTCGTCCATA+CGG | 0.535292 | 3.1:+31523774 | None:intergenic |
| CTGACGAACACATTGTCGCC+TGG | 0.535999 | 3.1:-31524683 | MS.gene46979:CDS |
| CAAATCCTATACCAGTAGGA+AGG | 0.542961 | 3.1:+31523717 | None:intergenic |
| GCCGGTTAACATACCGGACC+AGG | 0.546518 | 3.1:-31525782 | MS.gene46979:CDS |
| TTGTGCTCTCGATTTCCGTA+TGG | 0.548771 | 3.1:-31523789 | MS.gene46979:CDS |
| CCATAAAGAAGCTGAATGGA+AGG | 0.555686 | 3.1:+31523578 | None:intergenic |
| ATCGTTTAGGTACAGCTACC+AGG | 0.563843 | 3.1:-31523493 | MS.gene46979:intron |
| CTACCTGAAGTTCTACAAGA+TGG | 0.564948 | 3.1:-31523621 | MS.gene46979:CDS |
| CGGCGCTGAAGTTGTTAGAA+GGG | 0.565477 | 3.1:-31523018 | MS.gene46979:CDS |
| CTGAAGTTGTTAGAAGGGCA+TGG | 0.565835 | 3.1:-31523013 | MS.gene46979:CDS |
| TACCCAGTAAAATTGGGAAG+TGG | 0.568031 | 3.1:-31522104 | MS.gene46979:CDS |
| CTATACCAGTAGGAAGGGAA+AGG | 0.569144 | 3.1:+31523723 | None:intergenic |
| AAAGATACAATACGATCTCC+AGG | 0.572618 | 3.1:+31524665 | None:intergenic |
| GGACGAATGGGGAGTAGATG+TGG | 0.573975 | 3.1:-31523768 | MS.gene46979:CDS |
| GTTCATAATGAGACTGCAAC+TGG | 0.575174 | 3.1:-31524482 | MS.gene46979:CDS |
| TACCTGAAGTTCTACAAGAT+GGG | 0.576311 | 3.1:-31523620 | MS.gene46979:CDS |
| ATTGTTCTGTAAGTATGCAC+TGG | 0.576598 | 3.1:+31522070 | None:intergenic |
| AAATCCTATACCAGTAGGAA+GGG | 0.577438 | 3.1:+31523718 | None:intergenic |
| GACTTGACAATATTATTGCA+AGG | 0.578019 | 3.1:-31523520 | MS.gene46979:CDS |
| GTGGAAAGTGAATGGGGCCG+TGG | 0.578691 | 3.1:-31524575 | MS.gene46979:CDS |
| ATGGATTATGTTAATGGACC+AGG | 0.579109 | 3.1:-31525829 | MS.gene46979:CDS |
| TATACCAGTAGGAAGGGAAA+GGG | 0.584652 | 3.1:+31523724 | None:intergenic |
| GAAACCATCTCTTTGTTCCA+GGG | 0.585783 | 3.1:-31525804 | MS.gene46979:CDS |
| CAAATCCTTGAAGGAATGAG+AGG | 0.585795 | 3.1:+31522044 | None:intergenic |
| ACACTCCATCAACAAGGAGG+AGG | 0.586969 | 3.1:+31523819 | None:intergenic |
| TTTCGTCAGAGCTGGAATTG+CGG | 0.595527 | 3.1:+31525717 | None:intergenic |
| TGGTAAATACAGACTTGCTG+TGG | 0.606808 | 3.1:-31523126 | MS.gene46979:intron |
| GTACAACAATACCAGTAGTA+GGG | 0.606832 | 3.1:+31525635 | None:intergenic |
| CACTCCATCAACAAGGAGGA+GGG | 0.606889 | 3.1:+31523820 | None:intergenic |
| AGACTTGCTGTGGAGGCATG+GGG | 0.607099 | 3.1:-31523116 | MS.gene46979:CDS |
| TAAATACAGACTTGCTGTGG+AGG | 0.610487 | 3.1:-31523123 | MS.gene46979:intron |
| CAGAGCACTCTCCCAAGCAC+CGG | 0.615480 | 3.1:+31524703 | None:intergenic |
| CCGGCCCTGGAACAAAGAGA+TGG | 0.617441 | 3.1:+31525800 | None:intergenic |
| GAGATGATACTCAGAGATGT+TGG | 0.631831 | 3.1:-31522128 | MS.gene46979:CDS |
| ATTGCACACAAAAGGAAGAG+TGG | 0.645383 | 3.1:-31523085 | MS.gene46979:CDS |
| GATGTTGTGGAAAGTGAATG+GGG | 0.673561 | 3.1:-31524581 | MS.gene46979:CDS |
| ACATCTTGGCAACTTGAACG+AGG | 0.675450 | 3.1:-31522925 | MS.gene46979:intron |
| ACCACAAATCCTATACCAGT+AGG | 0.677842 | 3.1:+31523713 | None:intergenic |
| TCAGCGCCGTCAATGTAAGG+AGG | 0.693240 | 3.1:+31523032 | None:intergenic |
| GATTTCCGTATGGACGAATG+GGG | 0.694111 | 3.1:-31523779 | MS.gene46979:CDS |
| TGGATGACACTCCATCAACA+AGG | 0.697918 | 3.1:+31523813 | None:intergenic |
| GAATGTCGAGATCAGCACCA+CGG | 0.723451 | 3.1:+31524558 | None:intergenic |
| GGCGATGAGCCGAAACAACG+AGG | 0.733854 | 3.1:-31525752 | MS.gene46979:CDS |
| ATGACACTCCATCAACAAGG+AGG | 0.767226 | 3.1:+31523816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTTAAATGTTTTTAT+GGG | - | chr3.1:31522273-31522292 | MS.gene46979:intron | 10.0% |
| !! | CATAAAAACATTTAACAATT+TGG | + | chr3.1:31522274-31522293 | None:intergenic | 15.0% |
| !! | TATGTAAATTTGCATAAATT+TGG | - | chr3.1:31523860-31523879 | MS.gene46979:intron | 15.0% |
| !! | TTATAAATATTTACGTGTAT+TGG | + | chr3.1:31525297-31525316 | None:intergenic | 15.0% |
| !!! | AATAGTTGAAACTTTTTTTT+TGG | - | chr3.1:31524692-31524711 | MS.gene46979:CDS | 15.0% |
| !!! | AATGATAATGATTTATACAA+AGG | + | chr3.1:31523724-31523743 | None:intergenic | 15.0% |
| !!! | AATTTGAAGTTTAAAAATCA+AGG | - | chr3.1:31525236-31525255 | MS.gene46979:intron | 15.0% |
| !!! | ATTTACGTTTTATCTTTATT+AGG | - | chr3.1:31523096-31523115 | MS.gene46979:CDS | 15.0% |
| !!! | CAAATTGTTAAATGTTTTTA+TGG | - | chr3.1:31522272-31522291 | MS.gene46979:intron | 15.0% |
| !!! | TTTTTGCTAGATTTTTTTTT+AGG | + | chr3.1:31524456-31524475 | None:intergenic | 15.0% |
| !! | AAGTATAACTTGAACATATT+AGG | + | chr3.1:31525201-31525220 | None:intergenic | 20.0% |
| !! | ATAAGCACTTATATGATAAA+CGG | - | chr3.1:31522501-31522520 | MS.gene46979:intron | 20.0% |
| !! | TAAAGAATTAGCAATTTCAA+TGG | + | chr3.1:31525681-31525700 | None:intergenic | 20.0% |
| !! | TAGTTTCAGAAATATTACTT+AGG | - | chr3.1:31523606-31523625 | MS.gene46979:CDS | 20.0% |
| !! | TCGAATAATTCAATACAAAT+AGG | + | chr3.1:31522575-31522594 | None:intergenic | 20.0% |
| !!! | AGTTTGTTCAAATTTTTCTA+CGG | + | chr3.1:31524638-31524657 | None:intergenic | 20.0% |
| !!! | ATTATTTTCATAAGCTATCT+TGG | + | chr3.1:31522702-31522721 | None:intergenic | 20.0% |
| !!! | CTATATATTTCATTCACTTT+TGG | - | chr3.1:31522968-31522987 | MS.gene46979:CDS | 20.0% |
| !!! | GTATTAAATTTTGTGTGTTT+TGG | - | chr3.1:31523000-31523019 | MS.gene46979:CDS | 20.0% |
| !!! | GTTTTATCTTTATTAGGATA+TGG | - | chr3.1:31523102-31523121 | MS.gene46979:CDS | 20.0% |
| !!! | TCTTTTCCTAAAATACTTAT+CGG | - | chr3.1:31525575-31525594 | MS.gene46979:intron | 20.0% |
| !!! | TGTTTTATTTTACATGTCTT+TGG | - | chr3.1:31523028-31523047 | MS.gene46979:CDS | 20.0% |
| !!! | TTAATACCGATAAGTATTTT+AGG | + | chr3.1:31525584-31525603 | None:intergenic | 20.0% |
| ! | AAAAGATACAATTTGAGCTT+AGG | - | chr3.1:31524882-31524901 | MS.gene46979:intron | 25.0% |
| ! | AACAAAAGTAATATTTGCGA+AGG | + | chr3.1:31523570-31523589 | None:intergenic | 25.0% |
| ! | ATCATATCGTCTTTATGAAA+TGG | - | chr3.1:31523984-31524003 | MS.gene46979:intron | 25.0% |
| ! | ATTAAGCTGAAAACAACTTA+TGG | + | chr3.1:31522384-31522403 | None:intergenic | 25.0% |
| ! | CAACATCGACATTAAATTTA+AGG | + | chr3.1:31523278-31523297 | None:intergenic | 25.0% |
| ! | CTAAGTCATGAATGTAAATA+AGG | + | chr3.1:31522890-31522909 | None:intergenic | 25.0% |
| ! | CTGTTGTTAACTATATGTAT+CGG | + | chr3.1:31525049-31525068 | None:intergenic | 25.0% |
| ! | GATATTTGAATTTCATGACT+TGG | - | chr3.1:31523693-31523712 | MS.gene46979:CDS | 25.0% |
| ! | GCATTATGAGAATAATATCA+AGG | - | chr3.1:31525646-31525665 | MS.gene46979:intron | 25.0% |
| ! | TAAATTTAATGTCGATGTTG+TGG | - | chr3.1:31523278-31523297 | MS.gene46979:intron | 25.0% |
| ! | TTACATATCTCGATAATCAT+TGG | + | chr3.1:31523847-31523866 | None:intergenic | 25.0% |
| ! | TTGTACTAAATATTGTATCG+TGG | + | chr3.1:31524597-31524616 | None:intergenic | 25.0% |
| ! | TTTCAGAAATATTACTTAGG+TGG | - | chr3.1:31523609-31523628 | MS.gene46979:CDS | 25.0% |
| !! | AACTTGTTCTTAATTCTTCT+TGG | - | chr3.1:31525401-31525420 | MS.gene46979:intron | 25.0% |
| !! | ATATGTTCAAGTTATACTTG+TGG | - | chr3.1:31525202-31525221 | MS.gene46979:intron | 25.0% |
| !! | TCTAATAACGTTTTTGCATT+TGG | - | chr3.1:31523138-31523157 | MS.gene46979:intron | 25.0% |
| !! | TTAAGTTGTTTATCGAAAGA+CGG | - | chr3.1:31522545-31522564 | MS.gene46979:intron | 25.0% |
| !!! | TTTAACAATTTGGTTTGTCA+AGG | + | chr3.1:31522264-31522283 | None:intergenic | 25.0% |
| !!! | TTTATTTTACATGTCTTTGG+TGG | - | chr3.1:31523031-31523050 | MS.gene46979:CDS | 25.0% |
| !!! | TTTTTTCAGTTGCAACTATT+GGG | - | chr3.1:31525705-31525724 | MS.gene46979:CDS | 25.0% |
| AAAATCAAGGTTCATGTCAA+AGG | - | chr3.1:31525249-31525268 | MS.gene46979:intron | 30.0% | |
| AAAGAAAACTCGAAGTGATT+TGG | + | chr3.1:31524220-31524239 | None:intergenic | 30.0% | |
| AGAATTAGCAATTTCAATGG+TGG | + | chr3.1:31525678-31525697 | None:intergenic | 30.0% | |
| ATACAATTTGAGCTTAGGTT+TGG | - | chr3.1:31524887-31524906 | MS.gene46979:intron | 30.0% | |
| ATCAAGAAATCAACATGTGA+AGG | + | chr3.1:31523661-31523680 | None:intergenic | 30.0% | |
| ATTCTTTCTCTCTATGGTAA+GGG | - | chr3.1:31525359-31525378 | MS.gene46979:intron | 30.0% | |
| GAAATATTACTTAGGTGGTA+AGG | - | chr3.1:31523614-31523633 | MS.gene46979:CDS | 30.0% | |
| GACTTGACAATATTATTGCA+AGG | - | chr3.1:31524352-31524371 | MS.gene46979:intron | 30.0% | |
| GTTAAGTCAATGAATCTGAT+AGG | - | chr3.1:31524714-31524733 | MS.gene46979:intron | 30.0% | |
| TAAGTTGTTTATCGAAAGAC+GGG | - | chr3.1:31522546-31522565 | MS.gene46979:intron | 30.0% | |
| TACAATTTGAGCTTAGGTTT+GGG | - | chr3.1:31524888-31524907 | MS.gene46979:intron | 30.0% | |
| TATGTTTCAGTGTTGTATCA+GGG | - | chr3.1:31525089-31525108 | MS.gene46979:intron | 30.0% | |
| TGAATCATTCTTTCTCTCTA+TGG | - | chr3.1:31525353-31525372 | MS.gene46979:intron | 30.0% | |
| TTATGTTTCAGTGTTGTATC+AGG | - | chr3.1:31525088-31525107 | MS.gene46979:intron | 30.0% | |
| TTGTTAACTATATGTATCGG+TGG | + | chr3.1:31525046-31525065 | None:intergenic | 30.0% | |
| TTTGAAGAATTGCACACAAA+AGG | - | chr3.1:31524779-31524798 | MS.gene46979:intron | 30.0% | |
| ! | ACAAAAAGTACATCTAAACC+AGG | + | chr3.1:31525455-31525474 | None:intergenic | 30.0% |
| ! | GGTCTAATTGATTCTTTGTT+TGG | + | chr3.1:31522817-31522836 | None:intergenic | 30.0% |
| ! | TGTGACAAAACACATTGTTT+TGG | - | chr3.1:31525150-31525169 | MS.gene46979:intron | 30.0% |
| !! | AAGATTTTCAAGACTACTAC+TGG | - | chr3.1:31522199-31522218 | MS.gene46979:intron | 30.0% |
| !!! | AAACACATTGTTTTGGCTTA+CGG | - | chr3.1:31525157-31525176 | MS.gene46979:intron | 30.0% |
| !!! | GTTTTTTCAGTTGCAACTAT+TGG | - | chr3.1:31525704-31525723 | MS.gene46979:CDS | 30.0% |
| !!! | TAGCATTGTACTTTTGAAGT+AGG | + | chr3.1:31525478-31525497 | None:intergenic | 30.0% |
| AAAGATACAATACGATCTCC+AGG | + | chr3.1:31523210-31523229 | None:intergenic | 35.0% | |
| AAAGTACATCTAAACCAGGA+TGG | + | chr3.1:31525451-31525470 | None:intergenic | 35.0% | |
| AAATCCTATACCAGTAGGAA+GGG | + | chr3.1:31524157-31524176 | None:intergenic | 35.0% | |
| AAGACCATAAAGAAGCTGAA+TGG | + | chr3.1:31524301-31524320 | None:intergenic | 35.0% | |
| AAGTCAATGAATCTGATAGG+TGG | - | chr3.1:31524717-31524736 | MS.gene46979:intron | 35.0% | |
| AAGTTGTTTATCGAAAGACG+GGG | - | chr3.1:31522547-31522566 | MS.gene46979:intron | 35.0% | |
| AATCTGATAGGTGGTCAATA+TGG | - | chr3.1:31524726-31524745 | MS.gene46979:intron | 35.0% | |
| ACTAAACAAAGTTGCTGGAA+AGG | - | chr3.1:31524911-31524930 | MS.gene46979:intron | 35.0% | |
| ATATTCCTCTCATTCCTTCA+AGG | - | chr3.1:31525823-31525842 | MS.gene46979:CDS | 35.0% | |
| ATTGTTCTGTAAGTATGCAC+TGG | + | chr3.1:31525805-31525824 | None:intergenic | 35.0% | |
| CAAAGAATCAATTAGACCAC+TGG | - | chr3.1:31522819-31522838 | MS.gene46979:intron | 35.0% | |
| CACACAAATTATGTCTTACC+TGG | + | chr3.1:31524400-31524419 | None:intergenic | 35.0% | |
| CATATTAGGAAGACCCTAAA+AGG | + | chr3.1:31525187-31525206 | None:intergenic | 35.0% | |
| CATTCTTTCTCTCTATGGTA+AGG | - | chr3.1:31525358-31525377 | MS.gene46979:intron | 35.0% | |
| CCAGGATGGTTAGAATTTAA+AGG | + | chr3.1:31525437-31525456 | None:intergenic | 35.0% | |
| CCTTTAAATTCTAACCATCC+TGG | - | chr3.1:31525434-31525453 | MS.gene46979:intron | 35.0% | |
| CGTATTGTATCTTTCGTGAT+TGG | - | chr3.1:31523216-31523235 | MS.gene46979:intron | 35.0% | |
| CTTAATTCCATATTCTCTCC+AGG | - | chr3.1:31522398-31522417 | MS.gene46979:intron | 35.0% | |
| GAACGTTGAAAATCCAAAGT+TGG | + | chr3.1:31523950-31523969 | None:intergenic | 35.0% | |
| GTACAACAATACCAGTAGTA+GGG | + | chr3.1:31522240-31522259 | None:intergenic | 35.0% | |
| GTTGGTTACCCAGTAAAATT+GGG | - | chr3.1:31525762-31525781 | MS.gene46979:CDS | 35.0% | |
| TACCTGAAGTTCTACAAGAT+GGG | - | chr3.1:31524252-31524271 | MS.gene46979:intron | 35.0% | |
| TCTACAAGATGGGAACTTAT+TGG | - | chr3.1:31524262-31524281 | MS.gene46979:intron | 35.0% | |
| TGATTCTGCACACACTATAA+AGG | - | chr3.1:31523356-31523375 | MS.gene46979:intron | 35.0% | |
| TTCACTTGCAACGTCATAAT+TGG | - | chr3.1:31523802-31523821 | MS.gene46979:CDS | 35.0% | |
| ! | AGCTCTTGATCTGATTTTTG+AGG | - | chr3.1:31524326-31524345 | MS.gene46979:intron | 35.0% |
| ! | ATGGATTATGTTAATGGACC+AGG | - | chr3.1:31522043-31522062 | MS.gene46979:CDS | 35.0% |
| ! | CTTTGGTGGTTACAGAATAA+TGG | - | chr3.1:31523045-31523064 | MS.gene46979:CDS | 35.0% |
| ! | GGATAGAGAATCAGATTTTG+TGG | + | chr3.1:31523483-31523502 | None:intergenic | 35.0% |
| ! | GTTTTCAGAATTGGACATCT+TGG | - | chr3.1:31524933-31524952 | MS.gene46979:intron | 35.0% |
| ! | TGTTGGTTACCCAGTAAAAT+TGG | - | chr3.1:31525761-31525780 | MS.gene46979:CDS | 35.0% |
| ! | TTAACTATATGTATCGGTGG+CGG | + | chr3.1:31525043-31525062 | None:intergenic | 35.0% |
| ! | TTGAAGCTTCAATGGCTTTA+GGG | + | chr3.1:31524191-31524210 | None:intergenic | 35.0% |
| ! | TTTGAAGCTTCAATGGCTTT+AGG | + | chr3.1:31524192-31524211 | None:intergenic | 35.0% |
| !! | AACGTTTTTGCATTTGGTTC+AGG | - | chr3.1:31523144-31523163 | MS.gene46979:intron | 35.0% |
| !! | CACTTCGAGTTTTCTTTGAT+TGG | - | chr3.1:31524223-31524242 | MS.gene46979:intron | 35.0% |
| !! | CTTGATCTGATTTTTGAGGA+AGG | - | chr3.1:31524330-31524349 | MS.gene46979:intron | 35.0% |
| !! | TTTAGTACAAAGCGTTGTAG+AGG | - | chr3.1:31524607-31524626 | MS.gene46979:CDS | 35.0% |
| !!! | AAGCACTTTTGAGACTGTTT+AGG | - | chr3.1:31522611-31522630 | MS.gene46979:intron | 35.0% |
| AACGATAGTCCTCGTTGTTT+CGG | + | chr3.1:31522132-31522151 | None:intergenic | 40.0% | |
| AAGCTATCCTGGAGAGAATA+TGG | + | chr3.1:31522408-31522427 | None:intergenic | 40.0% | |
| ACAAAGAGATGGTTTCTTCC+TGG | + | chr3.1:31522064-31522083 | None:intergenic | 40.0% | |
| ACAGAATAATGGCCTGAGAT+TGG | - | chr3.1:31523056-31523075 | MS.gene46979:CDS | 40.0% | |
| ACCACAAATCCTATACCAGT+AGG | + | chr3.1:31524162-31524181 | None:intergenic | 40.0% | |
| AGAAACCATCTCTTTGTTCC+AGG | - | chr3.1:31522067-31522086 | MS.gene46979:CDS | 40.0% | |
| AGACTGTTTGACAGAGCTTA+TGG | - | chr3.1:31522340-31522359 | MS.gene46979:intron | 40.0% | |
| AGCATAGACGATTAAGAGAG+TGG | + | chr3.1:31522936-31522955 | None:intergenic | 40.0% | |
| AGTTGTTTATCGAAAGACGG+GGG | - | chr3.1:31522548-31522567 | MS.gene46979:intron | 40.0% | |
| ATGGCACTCACATTGTAGTT+TGG | - | chr3.1:31524003-31524022 | MS.gene46979:intron | 40.0% | |
| ATGTGTGTACAATGACAGCT+TGG | + | chr3.1:31523504-31523523 | None:intergenic | 40.0% | |
| ATTGCAAGGCACAATCGTTT+AGG | - | chr3.1:31524366-31524385 | MS.gene46979:intron | 40.0% | |
| ATTGCACACAAAAGGAAGAG+TGG | - | chr3.1:31524787-31524806 | MS.gene46979:intron | 40.0% | |
| CAAATCCTATACCAGTAGGA+AGG | + | chr3.1:31524158-31524177 | None:intergenic | 40.0% | |
| CAAATCCTTGAAGGAATGAG+AGG | + | chr3.1:31525831-31525850 | None:intergenic | 40.0% | |
| CAACCCAAAGCAAACTGAAT+TGG | + | chr3.1:31523242-31523261 | None:intergenic | 40.0% | |
| CACGTAGCTATCAAGAGTTT+GGG | + | chr3.1:31524985-31525004 | None:intergenic | 40.0% | |
| CCAGTAGTAGGGATAAGAAA+TGG | + | chr3.1:31522229-31522248 | None:intergenic | 40.0% | |
| CCATAAAGAAGCTGAATGGA+AGG | + | chr3.1:31524297-31524316 | None:intergenic | 40.0% | |
| CCATTTCTTATCCCTACTAC+TGG | - | chr3.1:31522226-31522245 | MS.gene46979:intron | 40.0% | |
| CCTTCCATTCAGCTTCTTTA+TGG | - | chr3.1:31524294-31524313 | MS.gene46979:intron | 40.0% | |
| CGATGTTGTGGAAAGTGAAT+GGG | - | chr3.1:31523290-31523309 | MS.gene46979:intron | 40.0% | |
| CGTACAACAATACCAGTAGT+AGG | + | chr3.1:31522241-31522260 | None:intergenic | 40.0% | |
| CGTTGAAAATCCAAAGTTGG+TGG | + | chr3.1:31523947-31523966 | None:intergenic | 40.0% | |
| CTACCTGAAGTTCTACAAGA+TGG | - | chr3.1:31524251-31524270 | MS.gene46979:intron | 40.0% | |
| CTCCTAGTTTCACTGTTCAA+TGG | - | chr3.1:31523525-31523544 | MS.gene46979:CDS | 40.0% | |
| GAAACCATCTCTTTGTTCCA+GGG | - | chr3.1:31522068-31522087 | MS.gene46979:CDS | 40.0% | |
| GACCATTGAACAGTGAAACT+AGG | + | chr3.1:31523530-31523549 | None:intergenic | 40.0% | |
| GAGATGATACTCAGAGATGT+TGG | - | chr3.1:31525744-31525763 | MS.gene46979:CDS | 40.0% | |
| GAGCATCATCCTGATTACTA+AGG | + | chr3.1:31522849-31522868 | None:intergenic | 40.0% | |
| GATGTTGTGGAAAGTGAATG+GGG | - | chr3.1:31523291-31523310 | MS.gene46979:intron | 40.0% | |
| GCCACAGTTAGAAAACTTCT+CGG | - | chr3.1:31523429-31523448 | MS.gene46979:intron | 40.0% | |
| GGCTCCAATTTCATCTATCA+GGG | + | chr3.1:31525009-31525028 | None:intergenic | 40.0% | |
| GTTCATAATGAGACTGCAAC+TGG | - | chr3.1:31523390-31523409 | MS.gene46979:intron | 40.0% | |
| GTTGTTCCTCCTTACATTGA+CGG | - | chr3.1:31524834-31524853 | MS.gene46979:intron | 40.0% | |
| TAATGTGTCAATGTCGTGTC+TGG | - | chr3.1:31525601-31525620 | MS.gene46979:intron | 40.0% | |
| TACCCAGTAAAATTGGGAAG+TGG | - | chr3.1:31525768-31525787 | MS.gene46979:CDS | 40.0% | |
| TATACCAGTAGGAAGGGAAA+GGG | + | chr3.1:31524151-31524170 | None:intergenic | 40.0% | |
| TCCTACTGGTATAGGATTTG+TGG | - | chr3.1:31524158-31524177 | MS.gene46979:intron | 40.0% | |
| TCGATGTTGTGGAAAGTGAA+TGG | - | chr3.1:31523289-31523308 | MS.gene46979:intron | 40.0% | |
| TCTAACTGTGGCCAAGTTAT+TGG | + | chr3.1:31523421-31523440 | None:intergenic | 40.0% | |
| TGTTAGTGTCTGTGCTTCAT+AGG | - | chr3.1:31525624-31525643 | MS.gene46979:intron | 40.0% | |
| TTCCCATCTTGTAGAACTTC+AGG | + | chr3.1:31524257-31524276 | None:intergenic | 40.0% | |
| TTGGGACTAAACAAAGTTGC+TGG | - | chr3.1:31524906-31524925 | MS.gene46979:intron | 40.0% | |
| ! | ACCGAGAAGTTTTCTAACTG+TGG | + | chr3.1:31523433-31523452 | None:intergenic | 40.0% |
| ! | ACTCCACTTCCCAATTTTAC+TGG | + | chr3.1:31525774-31525793 | None:intergenic | 40.0% |
| ! | ACTCTTTTCAGAAGCTATCC+TGG | + | chr3.1:31522419-31522438 | None:intergenic | 40.0% |
| ! | CTCCACTTCCCAATTTTACT+GGG | + | chr3.1:31525773-31525792 | None:intergenic | 40.0% |
| ! | GCTGGAAAGGTTTTCAGAAT+TGG | - | chr3.1:31524924-31524943 | MS.gene46979:intron | 40.0% |
| ! | TGGCCAATTCAGTTTGCTTT+GGG | - | chr3.1:31523236-31523255 | MS.gene46979:intron | 40.0% |
| ! | TTGGCCAATTCAGTTTGCTT+TGG | - | chr3.1:31523235-31523254 | MS.gene46979:intron | 40.0% |
| ! | TTTGCATTTGGTTCAGGTAC+CGG | - | chr3.1:31523150-31523169 | MS.gene46979:intron | 40.0% |
| !! | AACTGGTGTCACCAATAACT+TGG | - | chr3.1:31523407-31523426 | MS.gene46979:intron | 40.0% |
| !! | CATTTTTCAGCCACCAACTT+TGG | - | chr3.1:31523934-31523953 | MS.gene46979:intron | 40.0% |
| !! | TAAATACAGACTTGCTGTGG+AGG | - | chr3.1:31524749-31524768 | MS.gene46979:intron | 40.0% |
| !! | TGGTAAATACAGACTTGCTG+TGG | - | chr3.1:31524746-31524765 | MS.gene46979:intron | 40.0% |
| !!! | GGCAGATTTTGAAGCTTCAA+TGG | + | chr3.1:31524199-31524218 | None:intergenic | 40.0% |
| ACATCTTGGCAACTTGAACG+AGG | - | chr3.1:31524947-31524966 | MS.gene46979:intron | 45.0% | |
| ACTGGACTGCCTTAGTAATC+AGG | - | chr3.1:31522837-31522856 | MS.gene46979:intron | 45.0% | |
| ATCGTTTAGGTACAGCTACC+AGG | - | chr3.1:31524379-31524398 | MS.gene46979:intron | 45.0% | |
| ATGACACTCCATCAACAAGG+AGG | + | chr3.1:31524059-31524078 | None:intergenic | 45.0% | |
| CACATGAGTCAATGTCGAGT+TGG | + | chr3.1:31525540-31525559 | None:intergenic | 45.0% | |
| CCACGTAGCTATCAAGAGTT+TGG | + | chr3.1:31524986-31525005 | None:intergenic | 45.0% | |
| CGATTTCCGTATGGACGAAT+GGG | - | chr3.1:31524092-31524111 | MS.gene46979:intron | 45.0% | |
| CGGCTCCAATTTCATCTATC+AGG | + | chr3.1:31525010-31525029 | None:intergenic | 45.0% | |
| CTATACCAGTAGGAAGGGAA+AGG | + | chr3.1:31524152-31524171 | None:intergenic | 45.0% | |
| CTGAAGTTGTTAGAAGGGCA+TGG | - | chr3.1:31524859-31524878 | MS.gene46979:intron | 45.0% | |
| CTTAGGTGGTAAGGTTCTGT+TGG | - | chr3.1:31523623-31523642 | MS.gene46979:CDS | 45.0% | |
| CTTTCCCTTCCTACTGGTAT+AGG | - | chr3.1:31524150-31524169 | MS.gene46979:intron | 45.0% | |
| GATGAAATTGGAGCCGTATC+CGG | - | chr3.1:31525014-31525033 | MS.gene46979:intron | 45.0% | |
| GATTTCCGTATGGACGAATG+GGG | - | chr3.1:31524093-31524112 | MS.gene46979:intron | 45.0% | |
| GTGGCCCTGATAGATGAAAT+TGG | - | chr3.1:31525002-31525021 | MS.gene46979:intron | 45.0% | |
| TCGATTTCCGTATGGACGAA+TGG | - | chr3.1:31524091-31524110 | MS.gene46979:intron | 45.0% | |
| TGATTACTAAGGCAGTCCAG+TGG | + | chr3.1:31522838-31522857 | None:intergenic | 45.0% | |
| TGGATGACACTCCATCAACA+AGG | + | chr3.1:31524062-31524081 | None:intergenic | 45.0% | |
| TTGTGCTCTCGATTTCCGTA+TGG | - | chr3.1:31524083-31524102 | MS.gene46979:intron | 45.0% | |
| TTTCGTCAGAGCTGGAATTG+CGG | + | chr3.1:31522158-31522177 | None:intergenic | 45.0% | |
| ! | ACGGAAATCGAGAGCACAAA+TGG | + | chr3.1:31524082-31524101 | None:intergenic | 45.0% |
| ! | AGCTGAATGGAAGGAGTGTA+TGG | + | chr3.1:31524288-31524307 | None:intergenic | 45.0% |
| ! | AGTAGAGTTTTCGTCAGAGC+TGG | + | chr3.1:31522166-31522185 | None:intergenic | 45.0% |
| ! | CAACTATTGGGTTGTCTTGC+TGG | - | chr3.1:31525717-31525736 | MS.gene46979:CDS | 45.0% |
| ! | CCAAACTCTTGATAGCTACG+TGG | - | chr3.1:31524983-31525002 | MS.gene46979:intron | 45.0% |
| ! | GGCTTACGGCTTACCTTTTA+GGG | - | chr3.1:31525171-31525190 | MS.gene46979:intron | 45.0% |
| ! | GGCTTTCTGAGAACCAGTTA+TGG | + | chr3.1:31524130-31524149 | None:intergenic | 45.0% |
| ! | TGGCTTACGGCTTACCTTTT+AGG | - | chr3.1:31525170-31525189 | MS.gene46979:intron | 45.0% |
| AAAGCCCTTTCCCTTCCTAC+TGG | - | chr3.1:31524144-31524163 | MS.gene46979:intron | 50.0% | |
| ACACTCCATCAACAAGGAGG+AGG | + | chr3.1:31524056-31524075 | None:intergenic | 50.0% | |
| ACATACCGGACCAGGTCATT+CGG | - | chr3.1:31522098-31522117 | MS.gene46979:CDS | 50.0% | |
| ACCTGGTCCGGTATGTTAAC+CGG | + | chr3.1:31522094-31522113 | None:intergenic | 50.0% | |
| ACTTCAGCGCCGTCAATGTA+AGG | + | chr3.1:31524846-31524865 | None:intergenic | 50.0% | |
| CACTCCATCAACAAGGAGGA+GGG | + | chr3.1:31524055-31524074 | None:intergenic | 50.0% | |
| CTACTCCCCATTCGTCCATA+CGG | + | chr3.1:31524101-31524120 | None:intergenic | 50.0% | |
| GAATGTCGAGATCAGCACCA+CGG | + | chr3.1:31523317-31523336 | None:intergenic | 50.0% | |
| GCTCTTGCTGAACCAATCTC+AGG | + | chr3.1:31523071-31523090 | None:intergenic | 50.0% | |
| GGAGTAGATGTGGCCATAAC+TGG | - | chr3.1:31524114-31524133 | MS.gene46979:intron | 50.0% | |
| TTCGTCAGAGCTGGAATTGC+GGG | + | chr3.1:31522157-31522176 | None:intergenic | 50.0% | |
| ! | ACGGCGCTGAAGTTGTTAGA+AGG | - | chr3.1:31524853-31524872 | MS.gene46979:intron | 50.0% |
| ! | ATTGGGTTGTCTTGCTGGTG+TGG | - | chr3.1:31525722-31525741 | MS.gene46979:CDS | 50.0% |
| ! | CGGCGCTGAAGTTGTTAGAA+GGG | - | chr3.1:31524854-31524873 | MS.gene46979:intron | 50.0% |
| CATACCGGACCAGGTCATTC+GGG | - | chr3.1:31522099-31522118 | MS.gene46979:CDS | 55.0% | |
| CCATCTCTTTGTTCCAGGGC+CGG | - | chr3.1:31522072-31522091 | MS.gene46979:CDS | 55.0% | |
| CTGACGAACACATTGTCGCC+TGG | - | chr3.1:31523189-31523208 | MS.gene46979:intron | 55.0% | |
| GGACGAATGGGGAGTAGATG+TGG | - | chr3.1:31524104-31524123 | MS.gene46979:intron | 55.0% | |
| TCAGCGCCGTCAATGTAAGG+AGG | + | chr3.1:31524843-31524862 | None:intergenic | 55.0% | |
| TCCAGGGCCGGTTAACATAC+CGG | - | chr3.1:31522084-31522103 | MS.gene46979:CDS | 55.0% | |
| !! | ACAGACTTGCTGTGGAGGCA+TGG | - | chr3.1:31524754-31524773 | MS.gene46979:intron | 55.0% |
| !! | AGACTTGCTGTGGAGGCATG+GGG | - | chr3.1:31524756-31524775 | MS.gene46979:intron | 55.0% |
| !! | CAGACTTGCTGTGGAGGCAT+GGG | - | chr3.1:31524755-31524774 | MS.gene46979:intron | 55.0% |
| !! | TATGTATCGGTGGCGGACAC+CGG | + | chr3.1:31525036-31525055 | None:intergenic | 55.0% |
| !! | TGGTTCAGGTACCGGTGCTT+GGG | - | chr3.1:31523158-31523177 | MS.gene46979:intron | 55.0% |
| !! | TTGGTTCAGGTACCGGTGCT+TGG | - | chr3.1:31523157-31523176 | MS.gene46979:intron | 55.0% |
| ATCGCCCGAATGACCTGGTC+CGG | + | chr3.1:31522106-31522125 | None:intergenic | 60.0% | |
| CAAGGAGGAGGGCTGGATGT+TGG | + | chr3.1:31524044-31524063 | None:intergenic | 60.0% | |
| CCAGCCCTCCTCCTTGTTGA+TGG | - | chr3.1:31524048-31524067 | MS.gene46979:intron | 60.0% | |
| CCATCAACAAGGAGGAGGGC+TGG | + | chr3.1:31524051-31524070 | None:intergenic | 60.0% | |
| CCGGCCCTGGAACAAAGAGA+TGG | + | chr3.1:31522075-31522094 | None:intergenic | 60.0% | |
| GCCGGTTAACATACCGGACC+AGG | - | chr3.1:31522090-31522109 | MS.gene46979:CDS | 60.0% | |
| GGCGATGAGCCGAAACAACG+AGG | - | chr3.1:31522120-31522139 | MS.gene46979:CDS | 60.0% | |
| GTGGAAAGTGAATGGGGCCG+TGG | - | chr3.1:31523297-31523316 | MS.gene46979:intron | 60.0% | |
| TCCGGTATGTTAACCGGCCC+TGG | + | chr3.1:31522088-31522107 | None:intergenic | 60.0% | |
| ! | CAGAGCACTCTCCCAAGCAC+CGG | + | chr3.1:31523172-31523191 | None:intergenic | 60.0% |
| GGCTCATCGCCCGAATGACC+TGG | + | chr3.1:31522111-31522130 | None:intergenic | 65.0% | |
| !! | TCGGTGGCGGACACCGGATA+CGG | + | chr3.1:31525030-31525049 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 31522043 | 31525851 | 31522043 | ID=MS.gene46979 |
| chr3.1 | mRNA | 31522043 | 31525851 | 31522043 | ID=MS.gene46979.t1;Parent=MS.gene46979 |
| chr3.1 | exon | 31525647 | 31525851 | 31525647 | ID=MS.gene46979.t1.exon1;Parent=MS.gene46979.t1 |
| chr3.1 | CDS | 31525647 | 31525851 | 31525647 | ID=cds.MS.gene46979.t1;Parent=MS.gene46979.t1 |
| chr3.1 | exon | 31524444 | 31524728 | 31524444 | ID=MS.gene46979.t1.exon2;Parent=MS.gene46979.t1 |
| chr3.1 | CDS | 31524444 | 31524728 | 31524444 | ID=cds.MS.gene46979.t1;Parent=MS.gene46979.t1 |
| chr3.1 | exon | 31523494 | 31523860 | 31523494 | ID=MS.gene46979.t1.exon3;Parent=MS.gene46979.t1 |
| chr3.1 | CDS | 31523494 | 31523860 | 31523494 | ID=cds.MS.gene46979.t1;Parent=MS.gene46979.t1 |
| chr3.1 | exon | 31522926 | 31523136 | 31522926 | ID=MS.gene46979.t1.exon4;Parent=MS.gene46979.t1 |
| chr3.1 | CDS | 31522926 | 31523136 | 31522926 | ID=cds.MS.gene46979.t1;Parent=MS.gene46979.t1 |
| chr3.1 | exon | 31522043 | 31522180 | 31522043 | ID=MS.gene46979.t1.exon5;Parent=MS.gene46979.t1 |
| chr3.1 | CDS | 31522043 | 31522180 | 31522043 | ID=cds.MS.gene46979.t1;Parent=MS.gene46979.t1 |
| Gene Sequence |
| Protein sequence |
