AlfalfaGEDB | MS.gene58331

M. sativa cultivar XinJiangDaYe / MS.gene58331

KEGG: -
GO: GO:0006091 GO:0008150 GO:0008152 GO:0009767 GO:0009987 GO:0022900 GO:0044237 GO:0055114
PFAM: PF04321.20 PF11623.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58331.t1	XP_003627624.1	95.5	243	11	0	20	262	74	316	7.80E-127	464.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58331.t1	Q9T0A4	55.1	243	94	5	255	490	6	240	6.2e-64	246.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58331.t1	G7LCN3	95.5	243	11	0	20	262	74	316	5.6e-127	464.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene58331	0.833872	4.16E-56	-1.69E-46
MS.gene049171	MS.gene58331	0.83586	1.31E-56	-1.69E-46
MS.gene049173	MS.gene58331	0.810449	1.15E-50	-1.69E-46
MS.gene049217	MS.gene58331	0.840502	8.37E-58	-1.69E-46
MS.gene049222	MS.gene58331	0.859351	4.39E-63	-1.69E-46
MS.gene049232	MS.gene58331	0.811914	5.52E-51	-1.69E-46
MS.gene049285	MS.gene58331	0.846814	1.71E-59	-1.69E-46
MS.gene049320	MS.gene58331	0.858266	9.27E-63	-1.69E-46
MS.gene049369	MS.gene58331	0.81515	1.07E-51	-1.69E-46
MS.gene049396	MS.gene58331	0.801331	9.47E-49	-1.69E-46

Showing 1 to 10 of 206 entries

Previous1 2 3 4 5…21Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58331.t1	MTR_8g032270	95.082	244	12	0	19	262	73	316	1.05e-169	481
MS.gene58331.t1	MTR_8g032260	93.249	237	12	1	262	494	8	244	9.17e-160	453
MS.gene58331.t1	MTR_7g076620	51.852	135	54	4	262	392	8	135	1.11e-35	130

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58331.t1	AT4G00560	68.400	250	79	0	14	263	74	323	2.89e-124	366
MS.gene58331.t1	AT4G00560	67.323	254	79	1	14	263	74	327	9.03e-122	360
MS.gene58331.t1	AT4G23890	56.379	243	91	5	255	490	6	240	3.15e-83	258
MS.gene58331.t1	AT4G00560	68.712	163	51	0	14	176	74	236	7.95e-78	244
MS.gene58331.t1	AT4G00560	69.600	125	38	0	14	138	74	198	8.62e-56	185

Showing 1 to 5 of 5 entries

Previous1Next

Find 110 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTTGAAAGTGTTG+CGG	0.579433	8.2:+65832354	MS.gene58331:CDS
AAAGAGCTTAAAAGAGAAGT+TGG	0.459053	8.2:+65832268	MS.gene58331:CDS
AAAGAGTTGATGGGGTTAAC+TGG	0.363165	8.2:+65832391	MS.gene58331:CDS
AAAGATGAGTGAGATTCTCT+TGG	0.529880	8.2:-65832114	None:intergenic
AAAGCAGGAGTACTGTTTGA+AGG	0.555664	8.2:+65832631	MS.gene58331:CDS
AACGCTTACAACTGAAGCTC+AGG	0.504540	8.2:+65831309	MS.gene58331:CDS
AACGTCTTCTTCCTTGTAAA+AGG	0.314975	8.2:-65830110	None:intergenic
AAGCCTTAAACTTTCTTCGT+CGG	0.537850	8.2:+65832492	MS.gene58331:CDS
AATCCGGTTTCATTTAAAGA+TGG	0.453086	8.2:+65831277	MS.gene58331:CDS
ACAAGCACGAGGCACTGAGA+TGG	0.620079	8.2:-65829852	None:intergenic

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGCTTAAAAGAGAAGT+TGG	+	chr8.2:65832268-65832287	MS.gene58331:CDS	30.0%
AATCCGGTTTCATTTAAAGA+TGG	+	chr8.2:65831277-65831296	MS.gene58331:CDS	30.0%
AATCGAAGTGTAAATGAGAA+TGG	-	chr8.2:65830037-65830056	None:intergenic	30.0%
ACTTTGTGGTCAAGATTAAA+TGG	+	chr8.2:65831875-65831894	MS.gene58331:intron	30.0%
AGTGTAAATGAGAATGGATA+TGG	-	chr8.2:65830031-65830050	None:intergenic	30.0%
ATACCACAGTACATGTAAAA+AGG	-	chr8.2:65832589-65832608	None:intergenic	30.0%
ATAGTTCCATAATCTAATCC+TGG	-	chr8.2:65831964-65831983	None:intergenic	30.0%
ATCATCCATGTATATTTCAC+AGG	-	chr8.2:65831581-65831600	None:intergenic	30.0%
ATTGTTCAAAGAATCACTGA+TGG	+	chr8.2:65832607-65832626	MS.gene58331:CDS	30.0%
ATTTCGATTGATGAAACTTG+CGG	+	chr8.2:65830333-65830352	MS.gene58331:intron	30.0%

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	65829646	65832774	65829646	ID=MS.gene58331
chr8.2	mRNA	65829646	65832774	65829646	ID=MS.gene58331.t1;Parent=MS.gene58331
chr8.2	exon	65829646	65829702	65829646	ID=MS.gene58331.t1.exon1;Parent=MS.gene58331.t1
chr8.2	CDS	65829646	65829702	65829646	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65829827	65829986	65829827	ID=MS.gene58331.t1.exon2;Parent=MS.gene58331.t1
chr8.2	CDS	65829827	65829986	65829827	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65830092	65830279	65830092	ID=MS.gene58331.t1.exon3;Parent=MS.gene58331.t1
chr8.2	CDS	65830092	65830279	65830092	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65830518	65830641	65830518	ID=MS.gene58331.t1.exon4;Parent=MS.gene58331.t1
chr8.2	CDS	65830518	65830641	65830518	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65830904	65831034	65830904	ID=MS.gene58331.t1.exon5;Parent=MS.gene58331.t1
chr8.2	CDS	65830904	65831034	65830904	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65831205	65831332	65831205	ID=MS.gene58331.t1.exon6;Parent=MS.gene58331.t1
chr8.2	CDS	65831205	65831332	65831205	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1
chr8.2	exon	65832078	65832774	65832078	ID=MS.gene58331.t1.exon7;Parent=MS.gene58331.t1
chr8.2	CDS	65832078	65832774	65832078	ID=cds.MS.gene58331.t1;Parent=MS.gene58331.t1

Gene Sequence

>MS.gene58331

ATGTGTTTGTGTGCTATGCAAACTAATGGATCTCGCAGAAATAAAGAGATAAAACATGTGAGGTTTACAGAACATAAGGAAAGGATGAAGGATCACATCTACCATTTCACAACTTTATAGAACATTTTCTGTTACTTGTTTCATTTTCATAATGTCAATTGTGTTGGTTTGTTATTGGCAGCCTGATGTAGTTGTTAATTGTGGTGCCATCTCAGTGCCTCGTGCTTGTGAAATCGATCCTGATACTGCACATGCTATTAATGTGCCGTCATCGCTCGTAAAATGGCTGCAAAGCTTTAAACAGAACAGTACTCTTCTCATTCATCTCTCCACAGATCAAGGTAAACCAATCTTATCGTGGTCGATTTATTGCATTTGTTGTCCATATCCATTCTCATTTACACTTCGATTTTAGCTAAATTGCAATTTATGTTTCTTCTCCTTAGTTTATGAAGGGGAGAAGTCCTTTTACAAGGAAGAAGACGTTCCTATTCCAGTTAATGTTTATGGAAAAACTAAAGTGGCAGCAGAGAAGTTCATTTCAGAAAACTTCCCAAACTTTGCAATTTTGAGAAGCAGTATCATCTATGGGCCACAAACTGTCTCACCAGTTCCAAAATCTCTTCCTATTCAGGTGCATGTGCAGTATATGGAATTATACTTTATTTGAAAACTAATGCGTCCAGCATTTCGATTGATGAAACTTGCGGTGTGAATGATGCTTGTAAAATTTGCTACATATTTCATAATGAATATGAGTTCCTAATCGTAACTGAATAAGATGTCTCTTTTTTAAAAGATGTTGGCAGTGCTTGGCTCACCATTTTTCAGTCTGCAATAAAAATAACCGAGAAAATCTCTTATTATTGCAGTGGATCGACAGTGCCCTTTCTAAAAGAGAAAAAGTGAATTTCTTTCACGACGAGTTCCGTTGTCCAATTTTCGTTAAGGATCTCGTAACTATCATACTAGCTTTAACAAACCAGTGGATATCAGGTACAGAACTTTTCGTAAAATAACTTGTATATATTGTTTAGGCATGCGGTACGCAGCAAAAGAGTTTCTTAATGAAACTGATTTTCAGTTCGATCTTTTTTAAGGTTTGAAAACACTTTTATTGGAGATGGTCAATCCTTATCTATGAATATATCTTATAACTCTTTTACAATTATGTATGATATTTTCATTTTCTTGTGTTCTTTAAACTTGAGGCATCTCAAATTCACCTTCATGATTTGATTTCTGATTCTTGTCACAGTGGGAAAGCAAATGCAATTGTTACTTAATGCCGGTGGACCTGATAGGGTATCACGCGTTGAAATGGCCGAGGCTGTTGCACAATTCAGAGGGTATGATACCTCATTAATCAAACCAGTCTCTGCTTCAACGGTACGTGTTATGCTTCATTTATCACTAAAATTTTGTGATGTGGAATTCAAAGCTGTTCATTTATCTTTTGATGTCGATTTGATCAGTTTGGTAACATGATATGATTTATCTTCTCGTCTTTGATTGTTCTTTATTGCGACGCTTATGAGCTTTCGTTATTGTTTTTCCAGGTTGACCGAGGTGTCAAGTCCCCAGCTGACATATCTATGGATATCACTAAATTGATTCAAACTCTAAACATTAATCCGGTTTCATTTAAAGATGGCGTTAAATTAACGCTTACAACTGAAGCTCAGGCGTGAGTCAGAAAATAATTTCTCATTTAAGACTTCCTTGTTTAGCATTTGAGTTGCTCTCAATAGTTGTTACTGCATTTAAATTGCATTTGAGTTGCTCTCAATAGTTGTTACTGCATTTAAATTGTTGTAAAATAAATCTATGTAAATTCTGAAAAAACCAAGTCAGCTCATTTTGTTGGATCTTCAGGTAGAGTTGGCAAATGCCAAGTAGTAAAATCATCAAGTTGGTTTGGTTTTCAACCAACCTGTGAAATATACATGGATGATGGAAAAAGTTGGTCATCATTCTGACACTCTTTCCATCATGTGTCATTATCATAGGAATTATCTAACATTGCAAAATTTAAGAAAGCACTGTTATCCCTATGTCATACTTTTCATTAGGCTTGAAAATATGTTGCCTTGGCTTTTCACTGCTATAATTTCACATGATAAATTGTGTGTTTGGATTACTTTATTTTGATGCTAAAATGAATTTAATCATAAGGTTATGCTGCAAAAATTTCTTTCCTCATATAGGCAAATTTGGTCCAAAGAATATACTTTGTGGTCAAGATTAAATGGGAAGAAGATTTTCTGATAGTTTTTCATTTCATAAAAAGATAGGCCTATCCAATAATTTTGTGGCCAGGATTAGATTATGGAACTATGCTATCCATCCCTCTTTCTCCTCTCACTAATGTTGTTTTCAGCCAATTTTCTAAACACTTGATTGAAAATGTCTTCCTTTGTTGCCCTTCATAGCCTTCATGGCTCTCTTCTAAGATCCAAGTTCTTAGGCCAAGAGAATCTCACTCATCTTTATCCTCACAGCAATAAAGCTTCCATCTTTCACAGCAAACCGACCTACAAAACCGTACAAACATGTGCCAAATTCGACTTGATGCAGATCATGGGAGGCAGAGGACTCTGCAAAGGAGAAGAAGGTCTTCAAAAAGAGCTTAAAAGAGAAGTTGGTCTTGATGATCAGAATCAACCAACATCATCAGAAGCAAGTAACAAAGAACAAGAAGACTCAACAAAATCCTTTGAAAGTGTTGCGGAAGACGGGTTCGAGAAAGAGTTGATGGGGTTAACTGGAGGGTTTCCTGGTGGTGAAAAAGGTTTGAAAAAATTCATTGAAGAAAACCCTGTTCCGAAACCTGGTAGAGGTGACAAAAGCCTTAAACTTTCTTCGTCGGAGAAGGCAAAACCACCAGAACTTCCGATGTTACTTCCAGGAATGATTGCTATTGTGAAGAATCAAAATAACCCTTTTTACATGTACTGTGGTATTGTTCAAAGAATCACTGATGGTAAAGCAGGAGTACTGTTTGAAGGAGGGAATTGGGATAAGTTGATCACCTTTAGGCTTGAGGAACTTGAGAGAAGAGAAAAAGGTCCTCCTATGAAGAATCCTAAGTCTTGTGTTCTTGAACCATTTCTTGTAAAGAAATCATAG

Protein sequence

>MS.gene58331.t1

MCLCAMQTNGSRRNKEIKHPDVVVNCGAISVPRACEIDPDTAHAINVPSSLVKWLQSFKQNSTLLIHLSTDQVYEGEKSFYKEEDVPIPVNVYGKTKVAAEKFISENFPNFAILRSSIIYGPQTVSPVPKSLPIQWIDSALSKREKVNFFHDEFRCPIFVKDLVTIILALTNQWISVGKQMQLLLNAGGPDRVSRVEMAEAVAQFRGYDTSLIKPVSASTVDRGVKSPADISMDITKLIQTLNINPVSFKDGVKLTLTTEAQALHGSLLRSKFLGQENLTHLYPHSNKASIFHSKPTYKTVQTCAKFDLMQIMGGRGLCKGEEGLQKELKREVGLDDQNQPTSSEASNKEQEDSTKSFESVAEDGFEKELMGLTGGFPGGEKGLKKFIEENPVPKPGRGDKSLKLSSSEKAKPPELPMLLPGMIAIVKNQNNPFYMYCGIVQRITDGKAGVLFEGGNWDKLITFRLEELERREKGPPMKNPKSCVLEPFLVKKS