AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321800 MtrunA17_Chr2g0299071 63.428 566 84 7 1 470 1 539 0.0 628
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAACAGTTACAGTTTC+AGG 0.156880 2_4:-23563225 Msa0321800:CDS
AACCAACAGGACTTGGTAAT+TGG 0.200786 2_4:+23564635 None:intergenic
ATCTGGCAGGAGTACATTTA+AGG 0.225316 2_4:-23565896 Msa0321800:intron
GGACTTACTTGATACTTTAT+TGG 0.234536 2_4:+23563573 None:intergenic
TGTTTGTTCGGTATATTTAT+AGG 0.241946 2_4:+23563363 None:intergenic
ATCAAAGAAGTTTGGATTTC+CGG 0.252286 2_4:-23563131 Msa0321800:CDS
ATAAAGATTGAAACTTAATT+TGG 0.258274 2_4:+23566661 None:intergenic
AGTTGATGTTCAATGTAAAA+TGG 0.267685 2_4:-23561585 Msa0321800:three_prime_UTR
ATGTTTAATAGTTATGAATT+TGG 0.277635 2_4:-23564758 Msa0321800:intron
AGAACATTGCAGATCAATAT+AGG 0.285969 2_4:-23564277 Msa0321800:intron
TATTATAGTGCTGGAATTCA+TGG 0.287052 2_4:-23566513 Msa0321800:intron
CCAGGAACAATCCTGGTTTC+AGG 0.291918 2_4:-23566617 Msa0321800:intron
CTCAAGCCATCAAAGAAGTT+TGG 0.303084 2_4:-23563139 Msa0321800:CDS
AGTCAATAGCATACCCCTTA+TGG 0.304434 2_4:+23566466 None:intergenic
TCAGTTCCAGTTTCAGTATA+TGG 0.306914 2_4:+23562992 None:intergenic
CCCTGGTTGAACCTTCTTCT+CGG 0.314639 2_4:+23564031 None:intergenic
GATAACAGAGATGAAAATTC+TGG 0.321341 2_4:-23562908 Msa0321800:CDS
AGGAATATTACTTGGCCATT+TGG 0.321528 2_4:-23561528 Msa0321800:three_prime_UTR
AATGTACCATATACTGAAAC+TGG 0.331288 2_4:-23562998 Msa0321800:CDS
TTCTTCTGAGAGTCAACATT+TGG 0.331749 2_4:-23563535 Msa0321800:CDS
GTTTGTTCGGTATATTTATA+GGG 0.335439 2_4:+23563364 None:intergenic
CACCTCATCACTAGTGCTTA+AGG 0.341279 2_4:+23564857 None:intergenic
GGAAATCCAAACTTCTTTGA+TGG 0.341451 2_4:+23563133 None:intergenic
AGCTTTGTTGAAGGGACTTT+GGG 0.346118 2_4:-23561625 Msa0321800:three_prime_UTR
ATTAGCCATAAAAGATTGAT+TGG 0.346699 2_4:+23566867 None:intergenic
CAGGAGGCTTCTTACAAGAT+AGG 0.348900 2_4:-23563485 Msa0321800:CDS
ATGGATGTTGATGAAGAAAA+TGG 0.359964 2_4:+23566485 None:intergenic
GAACATTGCAGATCAATATA+GGG 0.363626 2_4:-23564276 Msa0321800:intron
CTTGCATCAGGAATATTACT+TGG 0.364083 2_4:-23561536 Msa0321800:three_prime_UTR
TTCTTCATCAACATCCATAA+GGG 0.368786 2_4:-23566480 Msa0321800:CDS
CGGTCATTGAACACAGAATC+AGG 0.368862 2_4:-23563504 Msa0321800:CDS
CAGCTTTGTTGAAGGGACTT+TGG 0.372458 2_4:-23561626 Msa0321800:three_prime_UTR
AGGACAATAGCTGGTTTCAT+TGG 0.379015 2_4:-23566825 Msa0321800:five_prime_UTR
ACACTGTTCTTTCTTGCATC+AGG 0.381464 2_4:-23561548 Msa0321800:three_prime_UTR
AGGATTGTTCCTGGCATTGC+AGG 0.381856 2_4:+23566626 None:intergenic
AAACAACCGCAGAGAGTTAC+TGG 0.385233 2_4:-23564161 Msa0321800:CDS
GATATTACAGAAAGGTGTTT+GGG 0.386096 2_4:-23565871 Msa0321800:CDS
TTTGAATCTGTTTGTTTGTT+CGG 0.386957 2_4:+23563351 None:intergenic
TGATATTACAGAAAGGTGTT+TGG 0.387833 2_4:-23565872 Msa0321800:CDS
AATTAAGGACACCGTGCAAT+TGG 0.388794 2_4:-23563394 Msa0321800:CDS
TCTTGTTGAAGATGTTGCTT+TGG 0.395166 2_4:+23564667 None:intergenic
AGAAAGTAAAGCGAAAATTA+AGG 0.399900 2_4:-23563409 Msa0321800:CDS
TTCAGAAGATGAAGAATTTG+AGG 0.405608 2_4:+23561794 None:intergenic
TTGGATGGGATGGGGAAGAA+TGG 0.406269 2_4:+23566789 None:intergenic
CCTGAAACCAGGATTGTTCC+TGG 0.408939 2_4:+23566617 None:intergenic
TTTCTTCATCAACATCCATA+AGG 0.416458 2_4:-23566481 Msa0321800:CDS
TTACTTTCTTCAATATGTAC+TGG 0.418098 2_4:+23563423 None:intergenic
GGGATGGGGAAGAATGGATA+TGG 0.423142 2_4:+23566795 None:intergenic
ACCAACAGGACTTGGTAATT+GGG 0.427446 2_4:+23564636 None:intergenic
AGTTTCAGGAAACATGCCTT+TGG 0.433052 2_4:-23563211 Msa0321800:CDS
GGTGATGATTCTTGAGAAGA+TGG 0.446255 2_4:+23564688 None:intergenic
TTCTGGAGGACCATTTGATC+AGG 0.446366 2_4:-23562891 Msa0321800:intron
TTTCTCAGATGATGACTCAT+TGG 0.450749 2_4:+23564181 None:intergenic
TGTCACTTTCTGCACCTCTC+TGG 0.454237 2_4:+23564910 None:intergenic
TCAGATGATGACTCATTGGC+AGG 0.455034 2_4:+23564185 None:intergenic
CTTGGTAAGAAACTTGCAAC+AGG 0.456620 2_4:-23563448 Msa0321800:CDS
ACCTCATCACTAGTGCTTAA+GGG 0.458027 2_4:+23564858 None:intergenic
TAGGGTGAAAAGTGCTTCCT+TGG 0.458095 2_4:-23563466 Msa0321800:CDS
AACAAAATAGAGGATGATAT+TGG 0.459901 2_4:-23564065 Msa0321800:CDS
GTTATCATCAGTAGAAGTAC+TGG 0.459966 2_4:+23562925 None:intergenic
CTAGTTAGAAGGACAATAGC+TGG 0.462405 2_4:-23566834 Msa0321800:five_prime_UTR
GAAAATAGAAAATGTGGATA+AGG 0.463355 2_4:-23563109 Msa0321800:intron
GATGGAGCACTTAAAACATC+AGG 0.463793 2_4:+23564706 None:intergenic
TCTTGTAATTAAAACTCAAA+AGG 0.466424 2_4:+23561478 None:intergenic
ACATCAGGAGAAAGCCTTTG+AGG 0.470123 2_4:+23564721 None:intergenic
AGAAATACTCTTAACCATCT+AGG 0.471217 2_4:-23563177 Msa0321800:CDS
TGGGAAGACATGTTTCCACT+TGG 0.475277 2_4:-23565852 Msa0321800:CDS
TTGATGATAACCTGATCAAA+TGG 0.477480 2_4:+23562881 None:intergenic
GGTTTGTTGAACTGATTCTC+AGG 0.477643 2_4:+23561815 None:intergenic
AGCACTAGTGATGAGGTGTC+AGG 0.478655 2_4:-23564852 Msa0321800:intron
AGCAAATAGTAGAGATCAAG+AGG 0.484118 2_4:-23563286 Msa0321800:CDS
ACTTGATACTTTATTGGAGG+TGG 0.493719 2_4:+23563579 None:intergenic
CTTACTTGATACTTTATTGG+AGG 0.495401 2_4:+23563576 None:intergenic
TTAATATTCAGCTTTGTTGA+AGG 0.497841 2_4:-23561634 Msa0321800:three_prime_UTR
TTGTCATCGGAGAAACCAAC+AGG 0.498725 2_4:+23564622 None:intergenic
TGTGGAACTTTCTTTGTCAT+CGG 0.499342 2_4:+23564609 None:intergenic
TCTTCAATATTCCGAGAAGA+AGG 0.500643 2_4:-23564042 Msa0321800:intron
GGGAAGACATGTTTCCACTT+GGG 0.502659 2_4:-23565851 Msa0321800:CDS
TGCAATGCCAGGAACAATCC+TGG 0.506580 2_4:-23566624 Msa0321800:exon
TCTGATACAAAACAAAATAG+AGG 0.507430 2_4:-23564075 Msa0321800:CDS
TGAGAGTCAACATTTGGAGC+AGG 0.514270 2_4:-23563529 Msa0321800:CDS
TAATATTCAGCTTTGTTGAA+GGG 0.523410 2_4:-23561633 Msa0321800:three_prime_UTR
ATATTAACTGCTTGTGACAC+AGG 0.523930 2_4:+23564236 None:intergenic
GGAAGACATGTTTCCACTTG+GGG 0.525712 2_4:-23565850 Msa0321800:CDS
ATTCTGCACCCTGCAATGCC+AGG 0.526840 2_4:-23566635 Msa0321800:exon
AGGAGGCTTCTTACAAGATA+GGG 0.528120 2_4:-23563484 Msa0321800:CDS
GTCAACATTTGGAGCAGGAT+CGG 0.534338 2_4:-23563524 Msa0321800:CDS
TCGGAGAAACCAACAGGACT+TGG 0.535044 2_4:+23564628 None:intergenic
GGATTGTTCCTGGCATTGCA+GGG 0.537468 2_4:+23566627 None:intergenic
AGCCTTTGAGGAAATGTATG+TGG 0.545335 2_4:+23564733 None:intergenic
GAATTCTTACACAGGATATG+AGG 0.555986 2_4:-23563614 Msa0321800:intron
TTTCCGGAAAATAGAAAATG+TGG 0.558522 2_4:-23563115 Msa0321800:CDS
CAATTATCTCAGCAATGACA+TGG 0.560823 2_4:+23561685 None:intergenic
TGAGGTGAGCAAGTATGAAA+AGG 0.564247 2_4:-23562972 Msa0321800:CDS
TTTGTTGAAGGGACTTTGGG+AGG 0.565754 2_4:-23561622 Msa0321800:three_prime_UTR
AAGAAATAAAGATCAAGAAG+AGG 0.565984 2_4:-23563325 Msa0321800:CDS
TCCCACATACATTTCCTCAA+AGG 0.572259 2_4:-23564735 Msa0321800:CDS
GAGCAAGTATGAAAAGGTGC+AGG 0.579255 2_4:-23562966 Msa0321800:CDS
TTAAGGTTGATATTACAGAA+AGG 0.580085 2_4:-23565879 Msa0321800:CDS
TCCCAATTACCAAGTCCTGT+TGG 0.581309 2_4:-23564637 Msa0321800:CDS
CATACATTCAACTCTAGCAT+AGG 0.595307 2_4:+23566724 None:intergenic
TCTTCATCAACATCCATAAG+GGG 0.601384 2_4:-23566479 Msa0321800:intron
TTTCTATCAGAGAGCTCCAA+AGG 0.602700 2_4:+23563195 None:intergenic
GCGTGACAGAATTCGTATGA+TGG 0.603215 2_4:-23565781 Msa0321800:intron
ATATACTGAAACTGGAACTG+AGG 0.605588 2_4:-23562990 Msa0321800:CDS
GCCTTTGAGGAAATGTATGT+GGG 0.608477 2_4:+23564734 None:intergenic
ACCCTTAAGCACTAGTGATG+AGG 0.614795 2_4:-23564859 Msa0321800:CDS
AAAATTCAGTACCTGAAACC+AGG 0.621327 2_4:+23566606 None:intergenic
CTGTTGCAAGTTTCTTACCA+AGG 0.628286 2_4:+23563449 None:intergenic
GAGCTTCTTAACAGCCAGAG+AGG 0.633537 2_4:-23564924 Msa0321800:CDS
GAAGACATGTTTCCACTTGG+GGG 0.635876 2_4:-23565849 Msa0321800:CDS
TTATGAATATACCAGAAGGA+AGG 0.640543 2_4:-23561847 Msa0321800:intron
AACAGAGATGAAAATTCTGG+AGG 0.647018 2_4:-23562905 Msa0321800:CDS
AGGGCTCAACTCCAATTGCA+CGG 0.653427 2_4:+23563383 None:intergenic
TCTGAACCAGTAACTCTCTG+CGG 0.671016 2_4:+23564155 None:intergenic
TCATTGAACACAGAATCAGG+AGG 0.760114 2_4:-23563501 Msa0321800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTTAAAATAGATTA+TGG + chr2_4:23564440-23564459 None:intergenic 10.0%
!! TTTATTAACAAAGATATTAA+TGG + chr2_4:23565241-23565260 None:intergenic 10.0%
!!! TTTTTTAACTTTTGTTTAAG+TGG + chr2_4:23561539-23561558 None:intergenic 15.0%
!! ATAAAGATTGAAACTTAATT+TGG + chr2_4:23561628-23561647 None:intergenic 15.0%
!! ATAGATAATTTGAAGATTAT+AGG - chr2_4:23562649-23562668 Msa0321800:intron 15.0%
!! TGATATAATTGTGTTTAATA+CGG + chr2_4:23563088-23563107 None:intergenic 15.0%
!! ATGTTTAATAGTTATGAATT+TGG - chr2_4:23563528-23563547 Msa0321800:CDS 15.0%
!! ATTTGAAGAAAAAATAGAAT+TGG - chr2_4:23565669-23565688 Msa0321800:intron 15.0%
!!! ATTTTCCAATCAATCTTTTA+TGG - chr2_4:23561414-23561433 Msa0321800:three_prime_UTR 20.0%
!!! ATTGATTTTTATTATAGTGC+TGG - chr2_4:23561764-23561783 Msa0321800:CDS 20.0%
!! ATTAAAATTAGAGACTTACA+AGG + chr2_4:23561980-23561999 None:intergenic 20.0%
!!! CGATTTGATTTTTAAAATTC+AGG - chr2_4:23562244-23562263 Msa0321800:intron 20.0%
!!! TTGAACCATTTTATCAAATA+GGG + chr2_4:23562316-23562335 None:intergenic 20.0%
!!! ATTGAACCATTTTATCAAAT+AGG + chr2_4:23562317-23562336 None:intergenic 20.0%
!! ATCTTCAAATTATCTATCAA+TGG + chr2_4:23562646-23562665 None:intergenic 20.0%
!! TAGGATTACCAAAATATTAT+TGG - chr2_4:23562682-23562701 Msa0321800:intron 20.0%
!! CATTTGTTTGTATTAACTTA+TGG + chr2_4:23562944-23562963 None:intergenic 20.0%
!! ATACAAACAAATGTAATTGT+TGG - chr2_4:23562951-23562970 Msa0321800:CDS 20.0%
!! TACAAACAAATGTAATTGTT+GGG - chr2_4:23562952-23562971 Msa0321800:CDS 20.0%
!! TTAATAGATTACTGATATGT+GGG - chr2_4:23562980-23562999 Msa0321800:CDS 20.0%
!! TTAGAAGTAATCTTGTAAAA+TGG - chr2_4:23563061-23563080 Msa0321800:intron 20.0%
!!! TATTTATGTTACTTTTGAAC+CGG - chr2_4:23563229-23563248 Msa0321800:CDS 20.0%
!! TTCTAACAGTAATTAACTTA+AGG - chr2_4:23563259-23563278 Msa0321800:CDS 20.0%
!! ATGTACTATTGTTTGTTTAA+TGG - chr2_4:23563970-23563989 Msa0321800:intron 20.0%
!!! GTTATCATCAACTTTTAATT+TGG - chr2_4:23565417-23565436 Msa0321800:intron 20.0%
!! TTGTTGAACTTTATAATGTA+AGG - chr2_4:23565449-23565468 Msa0321800:intron 20.0%
!! GTTTATATAATTACAAGTGT+CGG - chr2_4:23565691-23565710 Msa0321800:intron 20.0%
!!! GATTTACAATGTTTTCTTAA+AGG + chr2_4:23566112-23566131 None:intergenic 20.0%
!!! TACAATGTTTTTCTTAAAGT+AGG + chr2_4:23566145-23566164 None:intergenic 20.0%
!! AATAACTTATGACATGTATA+TGG - chr2_4:23566192-23566211 Msa0321800:intron 20.0%
!! TCTTGTAATTAAAACTCAAA+AGG + chr2_4:23566811-23566830 None:intergenic 20.0%
! ATTAGCCATAAAAGATTGAT+TGG + chr2_4:23561422-23561441 None:intergenic 25.0%
!! TAAATGTTTTGCTAGTTAGA+AGG - chr2_4:23561441-23561460 Msa0321800:three_prime_UTR 25.0%
!! GAAAAATGGAAATTTTGGAT+GGG + chr2_4:23561514-23561533 None:intergenic 25.0%
!! TGAAAAATGGAAATTTTGGA+TGG + chr2_4:23561515-23561534 None:intergenic 25.0%
!! TGGTTGAAAAATGGAAATTT+TGG + chr2_4:23561519-23561538 None:intergenic 25.0%
! TTGTTTAAGTGGTTGAAAAA+TGG + chr2_4:23561528-23561547 None:intergenic 25.0%
! TCAAAAAGAAAATCAACATG+TGG + chr2_4:23561735-23561754 None:intergenic 25.0%
! ACAGATTACAACATAGAATT+TGG + chr2_4:23562186-23562205 None:intergenic 25.0%
!! TTTAAAATTCAGGATTCTGA+AGG - chr2_4:23562254-23562273 Msa0321800:intron 25.0%
! TTAAAATTCAGGATTCTGAA+GGG - chr2_4:23562255-23562274 Msa0321800:intron 25.0%
! TAACACCCTATTTGATAAAA+TGG - chr2_4:23562308-23562327 Msa0321800:intron 25.0%
!!! TTAAGGTTGATATTACAGAA+AGG - chr2_4:23562407-23562426 Msa0321800:CDS 25.0%
! AGTATAATACAAACTTACCA+AGG + chr2_4:23562620-23562639 None:intergenic 25.0%
! GATTATAGGATATCTTGTAT+AGG - chr2_4:23562663-23562682 Msa0321800:intron 25.0%
!! AGAGCTAACCAATAATATTT+TGG + chr2_4:23562693-23562712 None:intergenic 25.0%
!!! ATATTATTGGTTAGCTCTAT+AGG - chr2_4:23562695-23562714 Msa0321800:intron 25.0%
! GTTAATAGATTACTGATATG+TGG - chr2_4:23562979-23562998 Msa0321800:CDS 25.0%
! ATTATATCATGTAAACCCTA+AGG - chr2_4:23563099-23563118 Msa0321800:intron 25.0%
! GAACATACAATATTTGATCA+CGG + chr2_4:23563191-23563210 None:intergenic 25.0%
! ATAATTTAAGAAAGCGAAAG+TGG + chr2_4:23563863-23563882 None:intergenic 25.0%
! TCTGATACAAAACAAAATAG+AGG - chr2_4:23564211-23564230 Msa0321800:CDS 25.0%
! AACAAAATAGAGGATGATAT+TGG - chr2_4:23564221-23564240 Msa0321800:CDS 25.0%
! TCAAATAAATCAATCCAAAC+AGG + chr2_4:23564349-23564368 None:intergenic 25.0%
! ATGTATAAGCTATTTGTGTA+AGG + chr2_4:23564523-23564542 None:intergenic 25.0%
!!! GAATTCACTTTTTGAAAAAC+TGG + chr2_4:23564658-23564677 None:intergenic 25.0%
!! GAAGAATCTTTCTTTTCATT+TGG + chr2_4:23564737-23564756 None:intergenic 25.0%
! TTACTTTCTTCAATATGTAC+TGG + chr2_4:23564866-23564885 None:intergenic 25.0%
! AGAAAGTAAAGCGAAAATTA+AGG - chr2_4:23564877-23564896 Msa0321800:CDS 25.0%
! GTTTGTTCGGTATATTTATA+GGG + chr2_4:23564925-23564944 None:intergenic 25.0%
! TGTTTGTTCGGTATATTTAT+AGG + chr2_4:23564926-23564945 None:intergenic 25.0%
! TTTGAATCTGTTTGTTTGTT+CGG + chr2_4:23564938-23564957 None:intergenic 25.0%
! AAGAAATAAAGATCAAGAAG+AGG - chr2_4:23564961-23564980 Msa0321800:intron 25.0%
!! TATCCACATTTTCTATTTTC+CGG + chr2_4:23565177-23565196 None:intergenic 25.0%
! GAAAATAGAAAATGTGGATA+AGG - chr2_4:23565177-23565196 Msa0321800:intron 25.0%
! GTATTACTATGTGTTGTATA+TGG - chr2_4:23565199-23565218 Msa0321800:intron 25.0%
! TATAATGTAAGGTTAGATGT+TGG - chr2_4:23565460-23565479 Msa0321800:intron 25.0%
! TGTAGCACAAAAACTTTATA+TGG + chr2_4:23565759-23565778 None:intergenic 25.0%
! ATAAAAGTTGCAATCGTTAT+AGG - chr2_4:23565856-23565875 Msa0321800:CDS 25.0%
! TAAAAGTTGCAATCGTTATA+GGG - chr2_4:23565857-23565876 Msa0321800:CDS 25.0%
! TTACAAGACAAAGAAAAAAG+AGG - chr2_4:23565899-23565918 Msa0321800:intron 25.0%
! CATGACACAATATAGTTAAA+AGG + chr2_4:23565969-23565988 None:intergenic 25.0%
!!! GAACAATTTTTTTTGAGTGA+AGG - chr2_4:23566017-23566036 Msa0321800:intron 25.0%
! ATGATGCAAATCTTGTATAA+TGG - chr2_4:23566066-23566085 Msa0321800:intron 25.0%
!! TTACAATGTTTTCTTAAAGG+AGG + chr2_4:23566109-23566128 None:intergenic 25.0%
! TTACAAAATACCTTATCCAT+AGG - chr2_4:23566310-23566329 Msa0321800:intron 25.0%
! AACTTTATGAATATACCAGA+AGG - chr2_4:23566435-23566454 Msa0321800:intron 25.0%
!! TTTGTGTTTCTTCTTTTTGA+AGG + chr2_4:23566630-23566649 None:intergenic 25.0%
!!! TTAATATTCAGCTTTGTTGA+AGG - chr2_4:23566652-23566671 Msa0321800:five_prime_UTR 25.0%
!!! TAATATTCAGCTTTGTTGAA+GGG - chr2_4:23566653-23566672 Msa0321800:five_prime_UTR 25.0%
!! AGTTGATGTTCAATGTAAAA+TGG - chr2_4:23566701-23566720 Msa0321800:five_prime_UTR 25.0%
! TATTATAGTGCTGGAATTCA+TGG - chr2_4:23561773-23561792 Msa0321800:CDS 30.0%
! ATGGATGTTGATGAAGAAAA+TGG + chr2_4:23561804-23561823 None:intergenic 30.0%
TTTCTTCATCAACATCCATA+AGG - chr2_4:23561805-23561824 Msa0321800:CDS 30.0%
TTCTTCATCAACATCCATAA+GGG - chr2_4:23561806-23561825 Msa0321800:CDS 30.0%
! AGTTGACAATAGGTTGAATA+AGG + chr2_4:23561869-23561888 None:intergenic 30.0%
CCACTTAAAAAGTTGACAAT+AGG + chr2_4:23561879-23561898 None:intergenic 30.0%
!! CCTATTGTCAACTTTTTAAG+TGG - chr2_4:23561876-23561895 Msa0321800:intron 30.0%
! AAGTGGCTATTGTAACATTT+TGG - chr2_4:23561893-23561912 Msa0321800:intron 30.0%
GAGTATGAAATCAATGACAA+AGG - chr2_4:23561946-23561965 Msa0321800:intron 30.0%
TGACACTGACACATAAATAT+TGG - chr2_4:23562055-23562074 Msa0321800:intron 30.0%
TAAAAATCAAATCGTCACGA+AGG + chr2_4:23562238-23562257 None:intergenic 30.0%
!! TGATATTACAGAAAGGTGTT+TGG - chr2_4:23562414-23562433 Msa0321800:intron 30.0%
!! GATATTACAGAAAGGTGTTT+GGG - chr2_4:23562415-23562434 Msa0321800:intron 30.0%
GCTTAAACAATGCAAACTAA+AGG - chr2_4:23562594-23562613 Msa0321800:intron 30.0%
AGCTCTATAGGATAATAAGT+AGG - chr2_4:23562707-23562726 Msa0321800:intron 30.0%
ACAAATGTAATTGTTGGGTT+TGG - chr2_4:23562957-23562976 Msa0321800:CDS 30.0%
TACTTCTAAATCATACTGCT+GGG + chr2_4:23563050-23563069 None:intergenic 30.0%
TTACTTCTAAATCATACTGC+TGG + chr2_4:23563051-23563070 None:intergenic 30.0%
CTTTCTATTGATCAACCTTA+GGG + chr2_4:23563117-23563136 None:intergenic 30.0%
! ATTTTCCAATGTCTTCTTGT+TGG + chr2_4:23563952-23563971 None:intergenic 30.0%
AGAACATTGCAGATCAATAT+AGG - chr2_4:23564009-23564028 Msa0321800:intron 30.0%
GAACATTGCAGATCAATATA+GGG - chr2_4:23564010-23564029 Msa0321800:intron 30.0%
! ATCATTTTCCTAACATTGCT+AGG + chr2_4:23564287-23564306 None:intergenic 30.0%
CAAAAAGTGAATTCTTACAC+AGG - chr2_4:23564664-23564683 Msa0321800:CDS 30.0%
CTTACTTGATACTTTATTGG+AGG + chr2_4:23564713-23564732 None:intergenic 30.0%
GGACTTACTTGATACTTTAT+TGG + chr2_4:23564716-23564735 None:intergenic 30.0%
! TTTGAAACAGTTACAGTTTC+AGG - chr2_4:23565061-23565080 Msa0321800:intron 30.0%
AGAAATACTCTTAACCATCT+AGG - chr2_4:23565109-23565128 Msa0321800:intron 30.0%
ATCAAAGAAGTTTGGATTTC+CGG - chr2_4:23565155-23565174 Msa0321800:intron 30.0%
TTTCCGGAAAATAGAAAATG+TGG - chr2_4:23565171-23565190 Msa0321800:intron 30.0%
AATGTACCATATACTGAAAC+TGG - chr2_4:23565288-23565307 Msa0321800:intron 30.0%
GATAACAGAGATGAAAATTC+TGG - chr2_4:23565378-23565397 Msa0321800:intron 30.0%
! TTGATGATAACCTGATCAAA+TGG + chr2_4:23565408-23565427 None:intergenic 30.0%
!!! GATGTTGGTAGTGATAATTT+TGG - chr2_4:23565475-23565494 Msa0321800:intron 30.0%
! CTGTTTTCATATTGTAACAC+TGG - chr2_4:23565509-23565528 Msa0321800:intron 30.0%
CAATGTTGCATTTAAGTATC+CGG - chr2_4:23565561-23565580 Msa0321800:intron 30.0%
CAATGTGTTAGTATTGTATC+TGG + chr2_4:23565637-23565656 None:intergenic 30.0%
CAGATACAATACTAACACAT+TGG - chr2_4:23565635-23565654 Msa0321800:intron 30.0%
GCACAAAAACTTTATATGGA+AGG + chr2_4:23565755-23565774 None:intergenic 30.0%
! TTTTATAACCTGAAAGGTGA+AGG + chr2_4:23565842-23565861 None:intergenic 30.0%
! TGCAACTTTTATAACCTGAA+AGG + chr2_4:23565848-23565867 None:intergenic 30.0%
ATGCATTAACAATCTTGTGA+AGG - chr2_4:23565986-23566005 Msa0321800:intron 30.0%
ATTAAGATGTATATCCAGAG+AGG - chr2_4:23566354-23566373 Msa0321800:intron 30.0%
TTAAGATGTATATCCAGAGA+GGG - chr2_4:23566355-23566374 Msa0321800:intron 30.0%
!! TTAGAGACACTAGTTCTATA+AGG + chr2_4:23566381-23566400 None:intergenic 30.0%
TTATGAATATACCAGAAGGA+AGG - chr2_4:23566439-23566458 Msa0321800:intron 30.0%
TTCAGAAGATGAAGAATTTG+AGG + chr2_4:23566495-23566514 None:intergenic 30.0%
! ATGGAAATTTTGGATGGGAT+GGG + chr2_4:23561509-23561528 None:intergenic 35.0%
! AATGGAAATTTTGGATGGGA+TGG + chr2_4:23561510-23561529 None:intergenic 35.0%
CATACATTCAACTCTAGCAT+AGG + chr2_4:23561565-23561584 None:intergenic 35.0%
AAAATTCAGTACCTGAAACC+AGG + chr2_4:23561683-23561702 None:intergenic 35.0%
TCTTCATCAACATCCATAAG+GGG - chr2_4:23561807-23561826 Msa0321800:CDS 35.0%
TAAATGAATGCAGCTTCCAT+GGG - chr2_4:23561916-23561935 Msa0321800:intron 35.0%
! ATGTCTTCTATCAGAAGTGT+CGG - chr2_4:23562144-23562163 Msa0321800:intron 35.0%
AGAATTTGGTACGACTTATC+TGG + chr2_4:23562172-23562191 None:intergenic 35.0%
AACGTGATGCAGTAAATATC+TGG - chr2_4:23562373-23562392 Msa0321800:intron 35.0%
!! TTAGCCCCTCATTTTTCAAT+GGG + chr2_4:23562808-23562827 None:intergenic 35.0%
!! TTTAGCCCCTCATTTTTCAA+TGG + chr2_4:23562809-23562828 None:intergenic 35.0%
ATTGAAAAATGAGGGGCTAA+AGG - chr2_4:23562808-23562827 Msa0321800:intron 35.0%
TTGAAAAATGAGGGGCTAAA+GGG - chr2_4:23562809-23562828 Msa0321800:intron 35.0%
GATTTCGTATTTGAGCTAGA+AGG + chr2_4:23562871-23562890 None:intergenic 35.0%
CCTTTCTATTGATCAACCTT+AGG + chr2_4:23563118-23563137 None:intergenic 35.0%
! CCTAAGGTTGATCAATAGAA+AGG - chr2_4:23563115-23563134 Msa0321800:CDS 35.0%
CAATATTTGATCACGGAGTT+CGG + chr2_4:23563184-23563203 None:intergenic 35.0%
TTACTGTTAGAACAGAAAGC+CGG + chr2_4:23563251-23563270 None:intergenic 35.0%
GGAGAGATCATTAAAAGTTG+TGG - chr2_4:23563280-23563299 Msa0321800:CDS 35.0%
! TCTTGTTGAAGATGTTGCTT+TGG + chr2_4:23563622-23563641 None:intergenic 35.0%
TGTGGAACTTTCTTTGTCAT+CGG + chr2_4:23563680-23563699 None:intergenic 35.0%
TTCCACAACAAATGTTGTTG+AGG - chr2_4:23563693-23563712 Msa0321800:intron 35.0%
!! AGTTTAGCTGTTTCTGTTCA+AGG + chr2_4:23563723-23563742 None:intergenic 35.0%
GAAACAGCTAAACTCAGTTA+AGG - chr2_4:23563729-23563748 Msa0321800:intron 35.0%
AAAGCGAAAGTGGATGATAT+CGG + chr2_4:23563853-23563872 None:intergenic 35.0%
TCATACCAACAAGAAGACAT+TGG - chr2_4:23563944-23563963 Msa0321800:intron 35.0%
ATATTAACTGCTTGTGACAC+AGG + chr2_4:23564053-23564072 None:intergenic 35.0%
TTTCTCAGATGATGACTCAT+TGG + chr2_4:23564108-23564127 None:intergenic 35.0%
TCTTCAATATTCCGAGAAGA+AGG - chr2_4:23564244-23564263 Msa0321800:CDS 35.0%
TACTGACATAAGCACAAGTA+AGG - chr2_4:23564376-23564395 Msa0321800:intron 35.0%
TAAGCACAAGTAAGGATGTT+TGG - chr2_4:23564384-23564403 Msa0321800:intron 35.0%
TTCACATAAGCTAGCTATCA+TGG + chr2_4:23564475-23564494 None:intergenic 35.0%
ATCATACTGTACATGCACAA+GGG + chr2_4:23564622-23564641 None:intergenic 35.0%
GAATTCTTACACAGGATATG+AGG - chr2_4:23564672-23564691 Msa0321800:CDS 35.0%
ACTTGATACTTTATTGGAGG+TGG + chr2_4:23564710-23564729 None:intergenic 35.0%
! TTCTTCTGAGAGTCAACATT+TGG - chr2_4:23564751-23564770 Msa0321800:intron 35.0%
AGCAAATAGTAGAGATCAAG+AGG - chr2_4:23565000-23565019 Msa0321800:intron 35.0%
GGAAATCCAAACTTCTTTGA+TGG + chr2_4:23565156-23565175 None:intergenic 35.0%
TCAGTTCCAGTTTCAGTATA+TGG + chr2_4:23565297-23565316 None:intergenic 35.0%
ATATACTGAAACTGGAACTG+AGG - chr2_4:23565296-23565315 Msa0321800:intron 35.0%
! GTTATCATCAGTAGAAGTAC+TGG + chr2_4:23565364-23565383 None:intergenic 35.0%
AACAGAGATGAAAATTCTGG+AGG - chr2_4:23565381-23565400 Msa0321800:intron 35.0%
CTTCTACAATAGCTGATAGT+AGG + chr2_4:23565795-23565814 None:intergenic 35.0%
CTACTATCAGCTATTGTAGA+AGG - chr2_4:23565793-23565812 Msa0321800:CDS 35.0%
! TAGCTTACGAAAACAGCTTT+TGG - chr2_4:23566250-23566269 Msa0321800:intron 35.0%
ACTTATAGCATAAGTGCCTA+TGG + chr2_4:23566329-23566348 None:intergenic 35.0%
!!! TCTTTTCAAGTTTCAGATGC+TGG - chr2_4:23566539-23566558 Msa0321800:intron 35.0%
CAATTATCTCAGCAATGACA+TGG + chr2_4:23566604-23566623 None:intergenic 35.0%
CTTGCATCAGGAATATTACT+TGG - chr2_4:23566750-23566769 Msa0321800:five_prime_UTR 35.0%
AGGAATATTACTTGGCCATT+TGG - chr2_4:23566758-23566777 Msa0321800:five_prime_UTR 35.0%
TTGGCCATTTGGTCAAAAAA+GGG - chr2_4:23566769-23566788 Msa0321800:five_prime_UTR 35.0%
!!! AAGACCCTTTTTTGACCAAA+TGG + chr2_4:23566776-23566795 None:intergenic 35.0%
CTAGTTAGAAGGACAATAGC+TGG - chr2_4:23561452-23561471 Msa0321800:three_prime_UTR 40.0%
! AGGACAATAGCTGGTTTCAT+TGG - chr2_4:23561461-23561480 Msa0321800:three_prime_UTR 40.0%
! TGGAAATTTTGGATGGGATG+GGG + chr2_4:23561508-23561527 None:intergenic 40.0%
AGTCAATAGCATACCCCTTA+TGG + chr2_4:23561823-23561842 None:intergenic 40.0%
GTAAATGAATGCAGCTTCCA+TGG - chr2_4:23561915-23561934 Msa0321800:intron 40.0%
AAATGAATGCAGCTTCCATG+GGG - chr2_4:23561917-23561936 Msa0321800:intron 40.0%
! TTCATACTCCATTTTCCCCA+TGG + chr2_4:23561935-23561954 None:intergenic 40.0%
!! AACCTATGTAGCATTGACAC+CGG - chr2_4:23562023-23562042 Msa0321800:intron 40.0%
TGTCACAAATGAGCCAATGT+CGG - chr2_4:23562108-23562127 Msa0321800:intron 40.0%
GTCTTACATCAATCCGACAT+TGG + chr2_4:23562124-23562143 None:intergenic 40.0%
TGATGCAGTAAATATCTGGC+AGG - chr2_4:23562377-23562396 Msa0321800:intron 40.0%
! ATCTGGCAGGAGTACATTTA+AGG - chr2_4:23562390-23562409 Msa0321800:CDS 40.0%
ACAATGCAAACTAAAGGCCT+TGG - chr2_4:23562600-23562619 Msa0321800:intron 40.0%
CCAACAATACCTCAGAAAAG+CGG + chr2_4:23562768-23562787 None:intergenic 40.0%
TGAGCCCCATTGAAAAATGA+GGG - chr2_4:23562800-23562819 Msa0321800:intron 40.0%
!! TAGCCCCTCATTTTTCAATG+GGG + chr2_4:23562807-23562826 None:intergenic 40.0%
CGTATTTGAGCTAGAAGGAA+AGG + chr2_4:23562866-23562885 None:intergenic 40.0%
ATACCTCTCTAACTGTAGAG+CGG + chr2_4:23563149-23563168 None:intergenic 40.0%
! CTCTACAGTTAGAGAGGTAT+AGG - chr2_4:23563149-23563168 Msa0321800:CDS 40.0%
! TAGAGAGGTATAGGCAGAAT+TGG - chr2_4:23563158-23563177 Msa0321800:CDS 40.0%
ACCTCATCACTAGTGCTTAA+GGG + chr2_4:23563431-23563450 None:intergenic 40.0%
TCCCACATACATTTCCTCAA+AGG - chr2_4:23563551-23563570 Msa0321800:CDS 40.0%
! GCCTTTGAGGAAATGTATGT+GGG + chr2_4:23563555-23563574 None:intergenic 40.0%
! AGCCTTTGAGGAAATGTATG+TGG + chr2_4:23563556-23563575 None:intergenic 40.0%
! GATGGAGCACTTAAAACATC+AGG + chr2_4:23563583-23563602 None:intergenic 40.0%
GGTGATGATTCTTGAGAAGA+TGG + chr2_4:23563601-23563620 None:intergenic 40.0%
! ACCAACAGGACTTGGTAATT+GGG + chr2_4:23563653-23563672 None:intergenic 40.0%
! AACCAACAGGACTTGGTAAT+TGG + chr2_4:23563654-23563673 None:intergenic 40.0%
!! TCTATGTAGCACTGACACTT+CGG - chr2_4:23563777-23563796 Msa0321800:intron 40.0%
!!! TGACACAGGTTTTGTTGATG+AGG + chr2_4:23564039-23564058 None:intergenic 40.0%
!!! TTTTGAAAGTGTTCCCCCTA+AGG - chr2_4:23564313-23564332 Msa0321800:intron 40.0%
ACAGGCCTAACTATACCTTA+GGG + chr2_4:23564331-23564350 None:intergenic 40.0%
AACAGGCCTAACTATACCTT+AGG + chr2_4:23564332-23564351 None:intergenic 40.0%
AAGGTATAGTTAGGCCTGTT+TGG - chr2_4:23564332-23564351 Msa0321800:intron 40.0%
! AGGATGTTTGGAACAGATCA+TGG - chr2_4:23564396-23564415 Msa0321800:intron 40.0%
TAGCTATCATGGAGAGCTTA+TGG + chr2_4:23564464-23564483 None:intergenic 40.0%
! CACAACAATTGGGCATTGTT+TGG + chr2_4:23564599-23564618 None:intergenic 40.0%
GATCATACTGTACATGCACA+AGG + chr2_4:23564623-23564642 None:intergenic 40.0%
TCATTGAACACAGAATCAGG+AGG - chr2_4:23564785-23564804 Msa0321800:intron 40.0%
AGGAGGCTTCTTACAAGATA+GGG - chr2_4:23564802-23564821 Msa0321800:intron 40.0%
CTGTTGCAAGTTTCTTACCA+AGG + chr2_4:23564840-23564859 None:intergenic 40.0%
CTTGGTAAGAAACTTGCAAC+AGG - chr2_4:23564838-23564857 Msa0321800:intron 40.0%
AATTAAGGACACCGTGCAAT+TGG - chr2_4:23564892-23564911 Msa0321800:CDS 40.0%
AGTTTCAGGAAACATGCCTT+TGG - chr2_4:23565075-23565094 Msa0321800:intron 40.0%
TTTCTATCAGAGAGCTCCAA+AGG + chr2_4:23565094-23565113 None:intergenic 40.0%
! ACTTTTTATCGTGGCCTAGA+TGG + chr2_4:23565126-23565145 None:intergenic 40.0%
!! GGCTTGAGTACTTTTTATCG+TGG + chr2_4:23565135-23565154 None:intergenic 40.0%
CTCAAGCCATCAAAGAAGTT+TGG - chr2_4:23565147-23565166 Msa0321800:intron 40.0%
TGAGGTGAGCAAGTATGAAA+AGG - chr2_4:23565314-23565333 Msa0321800:intron 40.0%
GTTGCAATCGTTATAGGGTT+TGG - chr2_4:23565862-23565881 Msa0321800:CDS 40.0%
! AAGCTATTCTAGAGAGCTTG+TGG + chr2_4:23566236-23566255 None:intergenic 40.0%
AGCATAAGTGCCTATGGATA+AGG + chr2_4:23566323-23566342 None:intergenic 40.0%
!! GGTTTGTTGAACTGATTCTC+AGG + chr2_4:23566474-23566493 None:intergenic 40.0%
!! AGCTTTGTTGAAGGGACTTT+GGG - chr2_4:23566661-23566680 Msa0321800:five_prime_UTR 40.0%
ACACTGTTCTTTCTTGCATC+AGG - chr2_4:23566738-23566757 Msa0321800:five_prime_UTR 40.0%
CTTGGCCATTTGGTCAAAAA+AGG - chr2_4:23566768-23566787 Msa0321800:five_prime_UTR 40.0%
TATGTGTCAGTGTCAGTGTC+AGG + chr2_4:23562050-23562069 None:intergenic 45.0%
! TCGTCACGAAGGCTAGTTAT+GGG + chr2_4:23562227-23562246 None:intergenic 45.0%
! ATCGTCACGAAGGCTAGTTA+TGG + chr2_4:23562228-23562247 None:intergenic 45.0%
TGGGAAGACATGTTTCCACT+TGG - chr2_4:23562434-23562453 Msa0321800:intron 45.0%
GGGAAGACATGTTTCCACTT+GGG - chr2_4:23562435-23562454 Msa0321800:intron 45.0%
GGAAGACATGTTTCCACTTG+GGG - chr2_4:23562436-23562455 Msa0321800:intron 45.0%
GAAGACATGTTTCCACTTGG+GGG - chr2_4:23562437-23562456 Msa0321800:intron 45.0%
GCGTGACAGAATTCGTATGA+TGG - chr2_4:23562505-23562524 Msa0321800:intron 45.0%
!!! CCGCTTTTCTGAGGTATTGT+TGG - chr2_4:23562765-23562784 Msa0321800:intron 45.0%
GTGAGCCCCATTGAAAAATG+AGG - chr2_4:23562799-23562818 Msa0321800:intron 45.0%
GAGCCCCATTGAAAAATGAG+GGG - chr2_4:23562801-23562820 Msa0321800:intron 45.0%
AAACCGCTCTACAGTTAGAG+AGG - chr2_4:23563143-23563162 Msa0321800:CDS 45.0%
ACCCTTAAGCACTAGTGATG+AGG - chr2_4:23563427-23563446 Msa0321800:CDS 45.0%
CACCTCATCACTAGTGCTTA+AGG + chr2_4:23563432-23563451 None:intergenic 45.0%
ACATCAGGAGAAAGCCTTTG+AGG + chr2_4:23563568-23563587 None:intergenic 45.0%
TCCCAATTACCAAGTCCTGT+TGG - chr2_4:23563649-23563668 Msa0321800:intron 45.0%
TTGTCATCGGAGAAACCAAC+AGG + chr2_4:23563667-23563686 None:intergenic 45.0%
! CGCCTCAACAACATTTGTTG+TGG + chr2_4:23563698-23563717 None:intergenic 45.0%
! GCACTGACACTTCGGATTAA+AGG - chr2_4:23563785-23563804 Msa0321800:intron 45.0%
CCTACATGTTACTGTGTGTC+CGG - chr2_4:23563891-23563910 Msa0321800:intron 45.0%
AGACCTATGAAGCACAAGCA+CGG + chr2_4:23563920-23563939 None:intergenic 45.0%
TCAGATGATGACTCATTGGC+AGG + chr2_4:23564104-23564123 None:intergenic 45.0%
AAACAACCGCAGAGAGTTAC+TGG - chr2_4:23564125-23564144 Msa0321800:CDS 45.0%
TCTGAACCAGTAACTCTCTG+CGG + chr2_4:23564134-23564153 None:intergenic 45.0%
GGAGAACTCCTAGCAATGTT+AGG - chr2_4:23564276-23564295 Msa0321800:intron 45.0%
GTTCCCCCTAAGGTATAGTT+AGG - chr2_4:23564323-23564342 Msa0321800:intron 45.0%
AGGCCTAACTATACCTTAGG+GGG + chr2_4:23564329-23564348 None:intergenic 45.0%
CAGGCCTAACTATACCTTAG+GGG + chr2_4:23564330-23564349 None:intergenic 45.0%
! TGCACAAGGGCACAACAATT+GGG + chr2_4:23564609-23564628 None:intergenic 45.0%
! ATGCACAAGGGCACAACAAT+TGG + chr2_4:23564610-23564629 None:intergenic 45.0%
! TGAGAGTCAACATTTGGAGC+AGG - chr2_4:23564757-23564776 Msa0321800:intron 45.0%
! GTCAACATTTGGAGCAGGAT+CGG - chr2_4:23564762-23564781 Msa0321800:intron 45.0%
CGGTCATTGAACACAGAATC+AGG - chr2_4:23564782-23564801 Msa0321800:intron 45.0%
CAGGAGGCTTCTTACAAGAT+AGG - chr2_4:23564801-23564820 Msa0321800:intron 45.0%
!! TAGGGTGAAAAGTGCTTCCT+TGG - chr2_4:23564820-23564839 Msa0321800:intron 45.0%
! GAGCAAGTATGAAAAGGTGC+AGG - chr2_4:23565320-23565339 Msa0321800:intron 45.0%
! TTCTGGAGGACCATTTGATC+AGG - chr2_4:23565395-23565414 Msa0321800:intron 45.0%
AAGTATCCGGTTTCTCGTTC+AGG - chr2_4:23565574-23565593 Msa0321800:intron 45.0%
GTAAAGCCTGAACGAGAAAC+CGG + chr2_4:23565583-23565602 None:intergenic 45.0%
TGTCAGTGACAGTGCTTCAT+AGG + chr2_4:23565614-23565633 None:intergenic 45.0%
CGTTGATACGTGTTAGACAC+TGG - chr2_4:23565719-23565738 Msa0321800:intron 45.0%
TTCTCACACCTTCACCTTTC+AGG - chr2_4:23565831-23565850 Msa0321800:CDS 45.0%
! TAGTTCTATAAGGCCCTCTC+TGG + chr2_4:23566371-23566390 None:intergenic 45.0%
!! CAGCTTTGTTGAAGGGACTT+TGG - chr2_4:23566660-23566679 Msa0321800:five_prime_UTR 45.0%
TTTGTTGAAGGGACTTTGGG+AGG - chr2_4:23566664-23566683 Msa0321800:five_prime_UTR 45.0%
!!! ATTAAAATTAATTTTTGATT+TGG - chr2_4:23563306-23563325 Msa0321800:CDS 5.0%
!! AAAATTAAATAAATATAACA+AGG + chr2_4:23565944-23565963 None:intergenic 5.0%
GGGATGGGGAAGAATGGATA+TGG + chr2_4:23561494-23561513 None:intergenic 50.0%
TTGGATGGGATGGGGAAGAA+TGG + chr2_4:23561500-23561519 None:intergenic 50.0%
GGATTGTTCCTGGCATTGCA+GGG + chr2_4:23561662-23561681 None:intergenic 50.0%
AGGATTGTTCCTGGCATTGC+AGG + chr2_4:23561663-23561682 None:intergenic 50.0%
TGCAATGCCAGGAACAATCC+TGG - chr2_4:23561662-23561681 Msa0321800:three_prime_UTR 50.0%
CCTGAAACCAGGATTGTTCC+TGG + chr2_4:23561672-23561691 None:intergenic 50.0%
CCAGGAACAATCCTGGTTTC+AGG - chr2_4:23561669-23561688 Msa0321800:three_prime_UTR 50.0%
TGCAGCTTCCATGGGGAAAA+TGG - chr2_4:23561924-23561943 Msa0321800:intron 50.0%
! GTCCGGTGTCAATGCTACAT+AGG + chr2_4:23562028-23562047 None:intergenic 50.0%
! CGTCACGAAGGCTAGTTATG+GGG + chr2_4:23562226-23562245 None:intergenic 50.0%
GGGAATGAAATATCGCGTGC+AGG - chr2_4:23562275-23562294 Msa0321800:intron 50.0%
CGGTGCAACGTACTTGAGAT+TGG + chr2_4:23562748-23562767 None:intergenic 50.0%
!! TACGTTGCACCGCTTTTCTG+AGG - chr2_4:23562756-23562775 Msa0321800:intron 50.0%
! TCAACTCTCGTGTCTGGCTT+AGG - chr2_4:23562836-23562855 Msa0321800:intron 50.0%
GAGCTTCTTAACAGCCAGAG+AGG - chr2_4:23563362-23563381 Msa0321800:CDS 50.0%
!! TGTCACTTTCTGCACCTCTC+TGG + chr2_4:23563379-23563398 None:intergenic 50.0%
! AGCACTAGTGATGAGGTGTC+AGG - chr2_4:23563434-23563453 Msa0321800:CDS 50.0%
TCGGAGAAACCAACAGGACT+TGG + chr2_4:23563661-23563680 None:intergenic 50.0%
CCGGACACACAGTAACATGT+AGG + chr2_4:23563894-23563913 None:intergenic 50.0%
TGTCCGTGCTTGTGCTTCAT+AGG - chr2_4:23563914-23563933 Msa0321800:intron 50.0%
TCCGAGAAGAAGGTTCAACC+AGG - chr2_4:23564254-23564273 Msa0321800:CDS 50.0%
CCCTGGTTGAACCTTCTTCT+CGG + chr2_4:23564258-23564277 None:intergenic 50.0%
CCGAGAAGAAGGTTCAACCA+GGG - chr2_4:23564255-23564274 Msa0321800:CDS 50.0%
ACATTGCTAGGAGTTCTCCC+TGG + chr2_4:23564275-23564294 None:intergenic 50.0%
AGGGCTCAACTCCAATTGCA+CGG + chr2_4:23564906-23564925 None:intergenic 50.0%
GGCACTATTCTCCTTCCTTC+TGG + chr2_4:23566453-23566472 None:intergenic 50.0%
ATTCTGCACCCTGCAATGCC+AGG - chr2_4:23561651-23561670 Msa0321800:three_prime_UTR 55.0%
GTCAGTGTCAGTGTCAGGTC+CGG + chr2_4:23562045-23562064 None:intergenic 55.0%
GACATGTTTCCACTTGGGGG+AGG - chr2_4:23562440-23562459 Msa0321800:intron 55.0%
GGCTTGTCAACTCTCGTGTC+TGG - chr2_4:23562830-23562849 Msa0321800:intron 55.0%
TGAAGCACAAGCACGGACAC+CGG + chr2_4:23563913-23563932 None:intergenic 55.0%
TGCAACTGTCCTCCCCCAAG+TGG + chr2_4:23562452-23562471 None:intergenic 60.0%
! ATGTGGGCAGCTTGCTCGAG+CGG - chr2_4:23562996-23563015 Msa0321800:CDS 60.0%
! TGTGGGCAGCTTGCTCGAGC+GGG - chr2_4:23562997-23563016 Msa0321800:CDS 65.0%
TGCTCGAGCGGGACCGTGAC+TGG - chr2_4:23563008-23563027 Msa0321800:intron 70.0%
GCTCGAGCGGGACCGTGACT+GGG - chr2_4:23563009-23563028 Msa0321800:intron 70.0%
CTCGAGCGGGACCGTGACTG+GGG - chr2_4:23563010-23563029 Msa0321800:intron 70.0%
AGCGGGACCGTGACTGGGGT+GGG - chr2_4:23563014-23563033 Msa0321800:intron 70.0%
TTGCCCCCCCACCCCAGTCA+CGG + chr2_4:23563024-23563043 None:intergenic 70.0%
GAGCGGGACCGTGACTGGGG+TGG - chr2_4:23563013-23563032 Msa0321800:intron 75.0%
GCGGGACCGTGACTGGGGTG+GGG - chr2_4:23563015-23563034 Msa0321800:intron 75.0%
CGGGACCGTGACTGGGGTGG+GGG - chr2_4:23563016-23563035 Msa0321800:intron 75.0%
GGGACCGTGACTGGGGTGGG+GGG - chr2_4:23563017-23563036 Msa0321800:intron 75.0%
GGACCGTGACTGGGGTGGGG+GGG - chr2_4:23563018-23563037 Msa0321800:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 23561404 23566904 23561404 ID=Msa0321800;Name=Msa0321800
chr2_4 mRNA 23561404 23566904 23561404 ID=Msa0321800-mRNA-1;Parent=Msa0321800;Name=Msa0321800-mRNA-1;_AED=0.20;_eAED=0.20;_QI=262|0.55|0.7|1|0.88|1|10|311|515
chr2_4 exon 23561404 23561854 23561404 ID=Msa0321800-mRNA-1:exon:8580;Parent=Msa0321800-mRNA-1
chr2_4 exon 23562388 23562430 23562388 ID=Msa0321800-mRNA-1:exon:8579;Parent=Msa0321800-mRNA-1
chr2_4 exon 23562892 23563020 23562892 ID=Msa0321800-mRNA-1:exon:8578;Parent=Msa0321800-mRNA-1
chr2_4 exon 23563110 23563622 23563110 ID=Msa0321800-mRNA-1:exon:8577;Parent=Msa0321800-mRNA-1
chr2_4 exon 23564043 23564287 23564043 ID=Msa0321800-mRNA-1:exon:8576;Parent=Msa0321800-mRNA-1
chr2_4 exon 23564617 23564769 23564617 ID=Msa0321800-mRNA-1:exon:8575;Parent=Msa0321800-mRNA-1
chr2_4 exon 23564853 23564976 23564853 ID=Msa0321800-mRNA-1:exon:8574;Parent=Msa0321800-mRNA-1
chr2_4 exon 23565782 23565909 23565782 ID=Msa0321800-mRNA-1:exon:8573;Parent=Msa0321800-mRNA-1
chr2_4 exon 23566480 23566527 23566480 ID=Msa0321800-mRNA-1:exon:8572;Parent=Msa0321800-mRNA-1
chr2_4 exon 23566618 23566904 23566618 ID=Msa0321800-mRNA-1:exon:8571;Parent=Msa0321800-mRNA-1
chr2_4 five_prime_UTR 23566643 23566904 23566643 ID=Msa0321800-mRNA-1:five_prime_utr;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23566618 23566642 23566618 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23566480 23566527 23566480 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23565782 23565909 23565782 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23564853 23564976 23564853 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23564617 23564769 23564617 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23564043 23564287 23564043 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23563110 23563622 23563110 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23562892 23563020 23562892 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23562388 23562430 23562388 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 CDS 23561715 23561854 23561715 ID=Msa0321800-mRNA-1:cds;Parent=Msa0321800-mRNA-1
chr2_4 three_prime_UTR 23561404 23561714 23561404 ID=Msa0321800-mRNA-1:three_prime_utr;Parent=Msa0321800-mRNA-1
Gene Sequence

>Msa0321800

ATGCCAGGAACAATCCTGGTTTCAGTGCTGGAATTCATGGATCTTCCATTTTCTTCATCAACATCCATAAGGGGAGTACATTTAAGGTTGATATTACAGAAAGGTGTTTGGGAAGACATGTTTCCACTTGGGGGAGGACAGTTGCATATGAAGCTGCAAGTCATACTTAGCGATGAAGAGCGTGACAGAATTCGTATGATGAGACAATCTGCATTAAAGAAAAAACAAGATGAGCTTCTTAACAGCCAGAGAGGTGCAGAAAGTGACAGACGTATGATTATCAGCAACGCAGCATTACCCTTAAGCACTAGTGATGAGGTGTCAGTTATGAATTTGGTCCCACATACATTTCCTCAAAGGCTTTCTCCTGATGTTTTAAGTGCTCCATCTTCTCAAGAATCATCACCAAAGCAACATCTTCAACAAGAAGCAGTTTCCCAATTACCAAGTCCTGTTGGTTTCTCCGATGACAAAGAAAATCAATATAGGGAGACCTCATCAACAAAACCTGTGTCACAAGCAGTTAATATCATTCAGTTACAGCGTAGCGATAAGAAGCCTGCCAATGAGTCATCATCTGAGAAACAACCGCAGAGAGTTACTGGTTCAGAAGAAAAAGAAAAGATGAATTCTTTAAGATCAGAAAAAGCTATTGTTGTTACAAATAATCTGATACAAAACAAAATAGAGGATGATATTGGTCTTCAATATTCCGAGAAGAAGGATATGAGGTCTCATATTAAACCACCTCCAATAAAGTATCAAGTAAGTCCAAATGAAAAGAAAGATTCTTCTGAGAGTCAACATTTGGAGCAGGATCGGTCATTGAACACAGAATCAGGAGGCTTCTTACAAGATAGGGTGAAAAGTGCTTCCTTGGTAAGAAACTTGCAACAGGTTCCAGTACATATTGAAGAAAGTAAAGCGAAAATTAAGGACACCGTGCAATTGGAGTTGAGCCCTATAAATATACCGAACAAACAAACAGATTCAAATGCAAGAAATAAAGATCAAGAAGAGGAGTCAAATAAAAAAGTAGCAAATAGTAGAGATCAAGAGGAAGAGAGAAATAAAAGAAATTTGATGAGAACATCTACATTTGAAACAGTTACAGTTTCAGGAAACATGCCTTTGGAGCTCTCTGATAGAAATACTCTTAACCATCTAGGCCACGATAAAAAGTACTCAAGCCATCAAAGAAGTTTGGATTTCCGGAAAATAGAAAATGTGGATAAGAATGTACCATATACTGAAACTGGAACTGAGGTGAGCAAGTATGAAAAGGTGCAGGACATTGAAGAATCAAAAACCAGTACTTCTACTGATGATAACAGAGATGAAAATTCTGGAGGACCATTTGATCAGGGTTTGGATTACTTGTTCTCTTTACAAGACAAAGAAAAAAGAGAAGGAAGGAGAATAGTGCCTGAGAATCAGTTCAACAAACCTCAAATTCTTCATCTTCTGAAGCACATACATCTGCATGATCAAATTCTTTTCAAGTTTCAGATGCTGGATCAAATCTTGCTTGATGAACATCTTGCATGA

Protein sequence

>Msa0321800

MPGTILVSVLEFMDLPFSSSTSIRGVHLRLILQKGVWEDMFPLGGGQLHMKLQVILSDEERDRIRMMRQSALKKKQDELLNSQRGAESDRRMIISNAALPLSTSDEVSVMNLVPHTFPQRLSPDVLSAPSSQESSPKQHLQQEAVSQLPSPVGFSDDKENQYRETSSTKPVSQAVNIIQLQRSDKKPANESSSEKQPQRVTGSEEKEKMNSLRSEKAIVVTNNLIQNKIEDDIGLQYSEKKDMRSHIKPPPIKYQVSPNEKKDSSESQHLEQDRSLNTESGGFLQDRVKSASLVRNLQQVPVHIEESKAKIKDTVQLELSPINIPNKQTDSNARNKDQEEESNKKVANSRDQEEERNKRNLMRTSTFETVTVSGNMPLELSDRNTLNHLGHDKKYSSHQRSLDFRKIENVDKNVPYTETGTEVSKYEKVQDIEESKTSTSTDDNRDENSGGPFDQGLDYLFSLQDKEKREGRRIVPENQFNKPQILHLLKHIHLHDQILFKFQMLDQILLDEHLA*