AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279910 MtrunA17_Chr2g0293571 93.581 296 15 3 1 293 1 295 0.0 537
Msa0279910 MtrunA17_Chr1g0208501 31.950 241 150 4 49 286 39 268 1.25e-29 113
Msa0279910 MtrunA17_Chr7g0273991 29.930 284 174 9 6 286 19 280 1.27e-29 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279910 AT5G44520.2 58.123 277 106 2 1 276 31 298 3.44e-110 322
Msa0279910 AT5G44520.1 58.123 277 106 2 1 276 1 268 4.57e-110 321
Msa0279910 AT3G04790.1 30.345 290 178 9 3 286 5 276 7.60e-27 106
Msa0279910 AT2G01290.1 30.992 242 150 6 49 286 36 264 5.58e-25 101
Msa0279910 AT1G71100.1 30.041 243 158 5 49 287 32 266 2.92e-24 99.4

Find 90 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACCAACTTCTTTAT+TGG 0.125915 2_3:+14146216 Msa0279910:CDS
GGGACATTTGTTGCTATAAT+TGG 0.176637 2_3:+14148168 Msa0279910:CDS
AATAATGAACACTAGCTTAT+TGG 0.176993 2_3:-14148349 None:intergenic
ACTAGCCTTCTCTTGGATTA+TGG 0.191456 2_3:-14148217 None:intergenic
GGGCATCATTCTAACAAAAT+TGG 0.210497 2_3:-14146272 None:intergenic
GTAAATGAGAGATTAAAATT+AGG 0.251296 2_3:+14150354 Msa0279910:three_prime_UTR
CTTATTGGCGTTATTCAGTA+TGG 0.270145 2_3:-14148334 None:intergenic
TCCAAATGGGTTGAACGTTT+TGG 0.288932 2_3:+14150257 Msa0279910:CDS
TTGGGGTCTGGTCATGCTTC+TGG 0.291464 2_3:+14147437 Msa0279910:CDS
TCTTATATATCTCTCCTTTG+TGG 0.329502 2_3:+14150325 Msa0279910:three_prime_UTR
TCCAAAACGTTCAACCCATT+TGG 0.340232 2_3:-14150258 None:intergenic
CTTACAGACTGAATTAAAAC+TGG 0.355408 2_3:-14148411 None:intergenic
ACATAGCATTGTCGCATAAC+AGG 0.356957 2_3:-14150523 None:intergenic
GAGATTGACGATATGTTTCT+TGG 0.357712 2_3:+14148532 Msa0279910:CDS
GGTATGGCCATTCAGCATTT+AGG 0.364770 2_3:+14147458 Msa0279910:CDS
TAAATGAGAGATTAAAATTA+GGG 0.375557 2_3:+14150355 Msa0279910:three_prime_UTR
AACTTACCAAGGCTTGGTAT+TGG 0.380544 2_3:-14149336 None:intergenic
GGTAATTTGAAAGACATAGT+AGG 0.399152 2_3:+14147497 Msa0279910:CDS
CTTCTTTCCAATAAAGAAGT+TGG 0.407706 2_3:-14146223 None:intergenic
GTGAAAAGTGGCATGGTTGT+AGG 0.420807 2_3:+14147413 Msa0279910:CDS
AGTGGCATGGTTGTAGGATT+GGG 0.431364 2_3:+14147419 Msa0279910:CDS
GGCATCATTCTAACAAAATT+GGG 0.432006 2_3:-14146271 None:intergenic
TATAACAACTAGCCTTCTCT+TGG 0.436447 2_3:-14148224 None:intergenic
GTGGTAATTGCATCTCCAAA+TGG 0.437485 2_3:+14150243 Msa0279910:CDS
GTATTACTTGCAGCTGAAGT+AGG 0.439510 2_3:+14149415 Msa0279910:intron
ATCATGTTGAAATAGAAAAT+CGG 0.444502 2_3:-14150454 None:intergenic
AAGTGGCATGGTTGTAGGAT+TGG 0.446137 2_3:+14147418 Msa0279910:CDS
GCTTCCATAGCTTCTTCTAC+AGG 0.450670 2_3:+14146184 Msa0279910:CDS
AGTGGATAAGGGAGGGAGGT+AGG 0.452688 2_3:-14146113 None:intergenic
TGTGGAGAAGACCAGCTATT+GGG 0.457431 2_3:+14149235 Msa0279910:CDS
AAAATCCTTGATAAAATTGA+TGG 0.458697 2_3:+14149439 Msa0279910:CDS
GCAAGTGAAGCAGCAAAGGC+TGG 0.460488 2_3:+14147759 Msa0279910:CDS
AAATCAGTACAAAGGTGGTC+TGG 0.462020 2_3:+14148377 Msa0279910:CDS
GTCTGGTCATGCTTCTGGTA+TGG 0.462156 2_3:+14147442 Msa0279910:CDS
AGCAAAGGCTGGGATTCCTT+TGG 0.462918 2_3:+14147770 Msa0279910:CDS
TCAAATTACCATGACGAAGT+TGG 0.465952 2_3:-14147484 None:intergenic
ATGGTTGTAGGATTGGGGTC+TGG 0.471721 2_3:+14147425 Msa0279910:CDS
AAGCCCTGTAGAAGAAGCTA+TGG 0.477415 2_3:-14146188 None:intergenic
GGACCTGCTTGCCCAATAGC+TGG 0.480422 2_3:-14149246 None:intergenic
CTTCCATAGCTTCTTCTACA+GGG 0.481289 2_3:+14146185 Msa0279910:CDS
GACTGCAGATGTAGTGGGTT+AGG 0.487152 2_3:+14150287 Msa0279910:CDS
GTGTGGAGAAGACCAGCTAT+TGG 0.489328 2_3:+14149234 Msa0279910:CDS
ACAATGCTATGTACTCTCTT+TGG 0.492190 2_3:+14150534 Msa0279910:three_prime_UTR
TATTACTTGCAGCTGAAGTA+GGG 0.507980 2_3:+14149416 Msa0279910:intron
TGGTAATTGCATCTCCAAAT+GGG 0.508882 2_3:+14150244 Msa0279910:CDS
CAGTGTATTGAGCTGCTTGG+AGG 0.509994 2_3:-14146327 None:intergenic
GTGTGAGAATTGAACATCAA+TGG 0.520558 2_3:+14146162 Msa0279910:exon
TCTATTTCAACATGATGTCA+TGG 0.523009 2_3:+14150461 Msa0279910:three_prime_UTR
AGACCAGCTATTGGGCAAGC+AGG 0.523384 2_3:+14149243 Msa0279910:CDS
GTAATTTGAAAGACATAGTA+GGG 0.524182 2_3:+14147498 Msa0279910:CDS
AGGCAGAACTTACCAAGGCT+TGG 0.536554 2_3:-14149342 None:intergenic
TGTCCTTCTCCTGTGACTAG+TGG 0.537726 2_3:-14149285 None:intergenic
CAGTACAAAGGTGGTCTGGA+AGG 0.553834 2_3:+14148381 Msa0279910:CDS
TGCACACTTGAGAATTGTCT+TGG 0.555235 2_3:-14147800 None:intergenic
ACATCTCCAATACCAAGCCT+TGG 0.560116 2_3:+14149330 Msa0279910:CDS
AAGTGCAAGTGAAGCAGCAA+AGG 0.564860 2_3:+14147755 Msa0279910:CDS
CAAGTGAAGCAGCAAAGGCT+GGG 0.565259 2_3:+14147760 Msa0279910:CDS
TGTCCCTTCTTCTACACCAT+CGG 0.571677 2_3:-14148151 None:intergenic
CAAATTGACTGCAGATGTAG+TGG 0.573359 2_3:+14150281 Msa0279910:CDS
ATGCCGATGGTGTAGAAGAA+GGG 0.574527 2_3:+14148148 Msa0279910:CDS
ATTGGGCAAGCAGGTCCACT+AGG 0.576262 2_3:+14149252 Msa0279910:CDS
TTACTTGTAGCTCAACTGGT+TGG 0.576510 2_3:+14148498 Msa0279910:intron
TTGGCGACCTAAATGCTGAA+TGG 0.590309 2_3:-14147465 None:intergenic
TTTCCACTAGTCACAGGAGA+AGG 0.598318 2_3:+14149282 Msa0279910:CDS
GTGGATACATACGTGAAAAG+TGG 0.600025 2_3:+14147401 Msa0279910:CDS
ATACAGTGTATTGAGCTGCT+TGG 0.600416 2_3:-14146330 None:intergenic
GGAATCCATAATCCAAGAGA+AGG 0.609640 2_3:+14148212 Msa0279910:CDS
GATGCCGATGGTGTAGAAGA+AGG 0.611287 2_3:+14148147 Msa0279910:CDS
ATTGAAGAAAATCAGTACAA+AGG 0.614464 2_3:+14148369 Msa0279910:CDS
TAGGGATGTTACACTTACAG+TGG 0.619328 2_3:+14150373 Msa0279910:three_prime_UTR
GGTGACTTTCCACTAGTCAC+AGG 0.620541 2_3:+14149276 Msa0279910:CDS
GAAGAAAATCAGTACAAAGG+TGG 0.624488 2_3:+14148372 Msa0279910:CDS
TTGTCTTGGTAGGTATCCAA+AGG 0.624910 2_3:-14147786 None:intergenic
CACTTGAGAATTGTCTTGGT+AGG 0.625596 2_3:-14147796 None:intergenic
GTCATCGAGACAAGAGCGAG+TGG 0.625671 2_3:-14146293 None:intergenic
GTGGCATGGTTGTAGGATTG+GGG 0.627903 2_3:+14147420 Msa0279910:CDS
TATGTTTCTTGGTGATGCTG+AGG 0.632074 2_3:+14148543 Msa0279910:CDS
TTAGGTCGCCAACTTCGTCA+TGG 0.632841 2_3:+14147476 Msa0279910:CDS
TCATTTACATTCATCCACAA+AGG 0.640250 2_3:-14150339 None:intergenic
GTTGCATTTGATGATGCCGA+TGG 0.643749 2_3:+14148135 Msa0279910:CDS
TTTGTAATGCAGATGTACAG+TGG 0.647555 2_3:+14150224 Msa0279910:intron
AGTGGAAAGTCACCACCTAG+TGG 0.652713 2_3:-14149267 None:intergenic
TCATCGAGACAAGAGCGAGT+GGG 0.662888 2_3:-14146292 None:intergenic
TTGTTGCTATAATTGGACGA+CGG 0.667250 2_3:+14148175 Msa0279910:CDS
AGTTGCGCGTGAGTGCATGT+AGG 0.667303 2_3:-14150431 None:intergenic
ACGACGGAAATTGCAAAGTG+AGG 0.672279 2_3:+14148191 Msa0279910:CDS
ATTGATGGTGTTGCAGACCA+TGG 0.679648 2_3:+14149454 Msa0279910:CDS
AAATTGACTGCAGATGTAGT+GGG 0.681003 2_3:+14150282 Msa0279910:CDS
TACATACGTGAAAAGTGGCA+TGG 0.683969 2_3:+14147406 Msa0279910:CDS
GGGCAAGCAGGTCCACTAGG+TGG 0.688474 2_3:+14149255 Msa0279910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTACATTTAAATTAT+GGG + chr2_3:14146920-14146939 Msa0279910:intron 10.0%
!!! AAAAAAAGTAAATTTAAGTT+TGG + chr2_3:14148015-14148034 Msa0279910:intron 10.0%
!!! TAATGTAATTATTAGTTTTT+TGG + chr2_3:14149015-14149034 Msa0279910:intron 10.0%
!!! TTTAATAATTTTTGTCTTAA+AGG - chr2_3:14149677-14149696 None:intergenic 10.0%
!!! TTTTTTTCAATTAAGATTGT+AGG + chr2_3:14146706-14146725 Msa0279910:intron 15.0%
!!! TTTTTTCAATTAAGATTGTA+GGG + chr2_3:14146707-14146726 Msa0279910:intron 15.0%
!! GGTTAATTACATTTAAATTA+TGG + chr2_3:14146919-14146938 Msa0279910:intron 15.0%
!!! TAAACATTTTATTAAGAAAC+AGG + chr2_3:14147157-14147176 Msa0279910:intron 15.0%
!!! TGAATTTTTTTTCTTCATAT+AGG + chr2_3:14147578-14147597 Msa0279910:intron 15.0%
!! AATGAATATATTAAAGAGAA+AGG - chr2_3:14148906-14148925 None:intergenic 15.0%
!!! TTGTTTTTCTTTGTATAATA+AGG + chr2_3:14149212-14149231 Msa0279910:intron 15.0%
!! TCTAATTATATAAAAACAAC+AGG - chr2_3:14149729-14149748 None:intergenic 15.0%
!! TAAATGAGAGATTAAAATTA+GGG + chr2_3:14150355-14150374 Msa0279910:three_prime_UTR 15.0%
!!! TTATAAGTTAGCTTATAACT+TGG + chr2_3:14146571-14146590 Msa0279910:intron 20.0%
!! TTATTTCCATGAGTATATAA+TGG - chr2_3:14146801-14146820 None:intergenic 20.0%
!! TAATTACAACGTTCAAATTT+AGG + chr2_3:14146870-14146889 Msa0279910:intron 20.0%
!! TAAATGTAATTAACCACTAT+AGG - chr2_3:14146914-14146933 None:intergenic 20.0%
!!! AGTTTTGATAAATTTTGCAA+AGG - chr2_3:14147208-14147227 None:intergenic 20.0%
!!! TATTGATTAAAATCAGAGAA+AGG - chr2_3:14147545-14147564 None:intergenic 20.0%
!!! TAAAAACTTTTCCAATATGT+AGG + chr2_3:14148718-14148737 Msa0279910:intron 20.0%
!!! AAAAACTTTTCCAATATGTA+GGG + chr2_3:14148719-14148738 Msa0279910:intron 20.0%
!!! AAATCATTTTACATTGATAG+TGG - chr2_3:14148980-14148999 None:intergenic 20.0%
!! TAAATATAATTGTAATGAGC+AGG - chr2_3:14149192-14149211 None:intergenic 20.0%
!! AAAATCCTTGATAAAATTGA+TGG + chr2_3:14149439-14149458 Msa0279910:CDS 20.0%
!!! AACTTTTATTTTATGCTCTT+TGG + chr2_3:14149509-14149528 Msa0279910:intron 20.0%
!! TAGAACTTCTTAACAAATTT+CGG + chr2_3:14149745-14149764 Msa0279910:intron 20.0%
!!! GTATATTTTATCCCTTATTT+CGG + chr2_3:14149942-14149961 Msa0279910:intron 20.0%
!! GTAAATGAGAGATTAAAATT+AGG + chr2_3:14150354-14150373 Msa0279910:three_prime_UTR 20.0%
!! ATCATGTTGAAATAGAAAAT+CGG - chr2_3:14150457-14150476 None:intergenic 20.0%
!!! AACTTCTTTTTAGTGGATAA+GGG - chr2_3:14146127-14146146 None:intergenic 25.0%
!!! TAACTTCTTTTTAGTGGATA+AGG - chr2_3:14146128-14146147 None:intergenic 25.0%
!! TTCATCTAACTTCTTTTTAG+TGG - chr2_3:14146134-14146153 None:intergenic 25.0%
! CAAAAACCATTATATACTCA+TGG + chr2_3:14146792-14146811 Msa0279910:intron 25.0%
! AAGACATAAATTTGAGCTTA+TGG - chr2_3:14146825-14146844 None:intergenic 25.0%
! AATTAACCATAATTTGAACG+CGG - chr2_3:14146855-14146874 None:intergenic 25.0%
! GTTCAAATAAGTGCTTAATT+AGG - chr2_3:14147021-14147040 None:intergenic 25.0%
!! TCATAAAAGAAAAGCACAAA+GGG - chr2_3:14147183-14147202 None:intergenic 25.0%
!! TTCATAAAAGAAAAGCACAA+AGG - chr2_3:14147184-14147203 None:intergenic 25.0%
!!! TCATGTATGTTTTTTATGCT+TGG + chr2_3:14147318-14147337 Msa0279910:intron 25.0%
!! TTGGTGATTATCCATTTAAT+TGG + chr2_3:14147337-14147356 Msa0279910:intron 25.0%
! TCATTCATCTTCCAATTAAA+TGG - chr2_3:14147351-14147370 None:intergenic 25.0%
!! TTTAGATATGTGTTGTTGTT+TGG + chr2_3:14147375-14147394 Msa0279910:intron 25.0%
! GTAATTTGAAAGACATAGTA+GGG + chr2_3:14147498-14147517 Msa0279910:CDS 25.0%
! TTCACCATGTATAAAATTGT+CGG + chr2_3:14147658-14147677 Msa0279910:intron 25.0%
!! TAAAATTGTCGGCATATTTT+AGG + chr2_3:14147669-14147688 Msa0279910:intron 25.0%
!! AAAATTGTCGGCATATTTTA+GGG + chr2_3:14147670-14147689 Msa0279910:intron 25.0%
! ACAAATACATCAATGCTAAA+TGG - chr2_3:14147718-14147737 None:intergenic 25.0%
! ATTGATGTATTTGTTTATGC+AGG + chr2_3:14147724-14147743 Msa0279910:intron 25.0%
! CAAGAAATACTCAACATTAA+AGG - chr2_3:14147851-14147870 None:intergenic 25.0%
!!! TTGAGTATTTCTTGTTTTAG+AGG + chr2_3:14147857-14147876 Msa0279910:intron 25.0%
!!! TGAGTATTTCTTGTTTTAGA+GGG + chr2_3:14147858-14147877 Msa0279910:intron 25.0%
! TGGATATCTTGATATAAGTT+AGG + chr2_3:14148035-14148054 Msa0279910:intron 25.0%
!! AATAATGAACACTAGCTTAT+TGG - chr2_3:14148352-14148371 None:intergenic 25.0%
! ATTGAAGAAAATCAGTACAA+AGG + chr2_3:14148369-14148388 Msa0279910:CDS 25.0%
! AAGAAAAACTCAGAAAAAGA+GGG - chr2_3:14148582-14148601 None:intergenic 25.0%
! AAGAAAATGTTAGATCTGAT+TGG + chr2_3:14148614-14148633 Msa0279910:intron 25.0%
! AAATAGTGAGAATGACATAA+AGG + chr2_3:14148651-14148670 Msa0279910:intron 25.0%
! CTACCTTTATCTCTAATATT+TGG + chr2_3:14148768-14148787 Msa0279910:intron 25.0%
! AGTCCAAATATTAGAGATAA+AGG - chr2_3:14148774-14148793 None:intergenic 25.0%
! GAATATATTAAAGAGAAAGG+TGG - chr2_3:14148903-14148922 None:intergenic 25.0%
!!! CAATTGTTTCTTTTCTTGTT+TGG + chr2_3:14148932-14148951 Msa0279910:intron 25.0%
!! TATTTGTTAATTGATCCAAG+AGG + chr2_3:14149112-14149131 Msa0279910:intron 25.0%
! TTTCTTTGTATAATAAGGTG+TGG + chr2_3:14149217-14149236 Msa0279910:intron 25.0%
! AAAAGTTGAGAGAAAACTAA+CGG - chr2_3:14149496-14149515 None:intergenic 25.0%
!!! TTATTTTATGCTCTTTGGAT+AGG + chr2_3:14149514-14149533 Msa0279910:intron 25.0%
! ACTCATGGAACTAAATAAAT+AGG - chr2_3:14150042-14150061 None:intergenic 25.0%
! GTTCTACTAAATTAATGCAT+TGG + chr2_3:14150106-14150125 Msa0279910:intron 25.0%
! ACATCTGCATTACAAAATAA+TGG - chr2_3:14150220-14150239 None:intergenic 25.0%
GAATTCACCAACTTCTTTAT+TGG + chr2_3:14146216-14146235 Msa0279910:CDS 30.0%
CTTCTTTCCAATAAAGAAGT+TGG - chr2_3:14146226-14146245 None:intergenic 30.0%
GGCATCATTCTAACAAAATT+GGG - chr2_3:14146274-14146293 None:intergenic 30.0%
TTATGGAGAGCTTATGAATA+TGG - chr2_3:14146418-14146437 None:intergenic 30.0%
TGTCTTCATGTAAGCTATTA+TGG - chr2_3:14146435-14146454 None:intergenic 30.0%
! AAAGTAGCAGATAGTTGATA+AGG + chr2_3:14146515-14146534 Msa0279910:intron 30.0%
! TTATAACTTGGTAGCTGATA+AGG + chr2_3:14146583-14146602 Msa0279910:intron 30.0%
! AAATGTTTTGCGAAAAGATG+TGG - chr2_3:14147052-14147071 None:intergenic 30.0%
ACTTGTAGAACAACATAAAG+GGG - chr2_3:14147254-14147273 None:intergenic 30.0%
CACTTGTAGAACAACATAAA+GGG - chr2_3:14147255-14147274 None:intergenic 30.0%
TCACTTGTAGAACAACATAA+AGG - chr2_3:14147256-14147275 None:intergenic 30.0%
TATGTTGTTCTACAAGTGAA+TGG + chr2_3:14147257-14147276 Msa0279910:intron 30.0%
ATGTTGTTCTACAAGTGAAT+GGG + chr2_3:14147258-14147277 Msa0279910:intron 30.0%
GGTAATTTGAAAGACATAGT+AGG + chr2_3:14147497-14147516 Msa0279910:CDS 30.0%
TGATTAAAATCAGAGAAAGG+AGG - chr2_3:14147542-14147561 None:intergenic 30.0%
TTCACCATGTTCAAAATTGT+CGG - chr2_3:14147604-14147623 None:intergenic 30.0%
! TATGCCGACAATTTTATACA+TGG - chr2_3:14147665-14147684 None:intergenic 30.0%
!!! TTCTTGTTTTAGAGGGTATT+TGG + chr2_3:14147865-14147884 Msa0279910:intron 30.0%
!! TCTTTAGGAAAATTTTCACC+AGG - chr2_3:14147920-14147939 None:intergenic 30.0%
CTTACAGACTGAATTAAAAC+TGG - chr2_3:14148414-14148433 None:intergenic 30.0%
! AATTTTACTTGTAGCTCAAC+TGG + chr2_3:14148494-14148513 Msa0279910:intron 30.0%
GAAGAAAAACTCAGAAAAAG+AGG - chr2_3:14148583-14148602 None:intergenic 30.0%
CTCAAGAAGAATTGATTAGA+TGG - chr2_3:14148805-14148824 None:intergenic 30.0%
CATCTAATCAATTCTTCTTG+AGG + chr2_3:14148803-14148822 Msa0279910:intron 30.0%
ATATAGTAGAAACATGCTTC+AGG - chr2_3:14148860-14148879 None:intergenic 30.0%
AAGAGAATGCAGAAAAACAT+GGG - chr2_3:14149151-14149170 None:intergenic 30.0%
TAAGAGAATGCAGAAAAACA+TGG - chr2_3:14149152-14149171 None:intergenic 30.0%
! CAACACCATCAATTTTATCA+AGG - chr2_3:14149447-14149466 None:intergenic 30.0%
AAAGTTGAGAGAAAACTAAC+GGG - chr2_3:14149495-14149514 None:intergenic 30.0%
!! GAGATCTTTTGAAAACAAAG+AGG + chr2_3:14149900-14149919 Msa0279910:intron 30.0%
! AAAACAAAGAGGTGCAAAAA+GGG + chr2_3:14149911-14149930 Msa0279910:intron 30.0%
TTTGGCAAAAAGAAATACGA+AGG + chr2_3:14149967-14149986 Msa0279910:intron 30.0%
CAAGATGTTTAAAAGTGACT+AGG - chr2_3:14150087-14150106 None:intergenic 30.0%
TCTTATATATCTCTCCTTTG+TGG + chr2_3:14150325-14150344 Msa0279910:three_prime_UTR 30.0%
TCATTTACATTCATCCACAA+AGG - chr2_3:14150342-14150361 None:intergenic 30.0%
! TCAACAATAACTGAGTTTTG+CGG + chr2_3:14150401-14150420 Msa0279910:three_prime_UTR 30.0%
TCTATTTCAACATGATGTCA+TGG + chr2_3:14150461-14150480 Msa0279910:three_prime_UTR 30.0%
!! TCTTTTTAGTGGATAAGGGA+GGG - chr2_3:14146123-14146142 None:intergenic 35.0%
!! TTCTTTTTAGTGGATAAGGG+AGG - chr2_3:14146124-14146143 None:intergenic 35.0%
GTGTGAGAATTGAACATCAA+TGG + chr2_3:14146162-14146181 Msa0279910:exon 35.0%
TGGAAAGAAGAAGAAGAAGA+AGG + chr2_3:14146236-14146255 Msa0279910:CDS 35.0%
GGGCATCATTCTAACAAAAT+TGG - chr2_3:14146275-14146294 None:intergenic 35.0%
TGATCAGACAATCTTAGTTG+TGG + chr2_3:14146485-14146504 Msa0279910:intron 35.0%
! GTTGATAAGGTAGCTTACAA+CGG + chr2_3:14146528-14146547 Msa0279910:intron 35.0%
CAGATTGAATTTGCAGTGTT+TGG + chr2_3:14146609-14146628 Msa0279910:intron 35.0%
CTTATCAAACAGACCTATAG+TGG + chr2_3:14146898-14146917 Msa0279910:intron 35.0%
!! GATATGTGTTGTTGTTTGGT+AGG + chr2_3:14147379-14147398 Msa0279910:intron 35.0%
TCAAATTACCATGACGAAGT+TGG - chr2_3:14147487-14147506 None:intergenic 35.0%
! ATCAATGCTAAATGGATTCG+TGG - chr2_3:14147710-14147729 None:intergenic 35.0%
GTAAGAGCTTTCTTCTCTTT+AGG - chr2_3:14147935-14147954 None:intergenic 35.0%
! GGGACATTTGTTGCTATAAT+TGG + chr2_3:14148168-14148187 Msa0279910:CDS 35.0%
TTGTTGCTATAATTGGACGA+CGG + chr2_3:14148175-14148194 Msa0279910:CDS 35.0%
!! TATAACAACTAGCCTTCTCT+TGG - chr2_3:14148227-14148246 None:intergenic 35.0%
AAACAACAGGAGAAAAAGCA+GGG - chr2_3:14148309-14148328 None:intergenic 35.0%
CTTATTGGCGTTATTCAGTA+TGG - chr2_3:14148337-14148356 None:intergenic 35.0%
GAAGAAAATCAGTACAAAGG+TGG + chr2_3:14148372-14148391 Msa0279910:CDS 35.0%
GAGATTGACGATATGTTTCT+TGG + chr2_3:14148532-14148551 Msa0279910:CDS 35.0%
ACATAAAGGCTACTCTATGT+AGG + chr2_3:14148665-14148684 Msa0279910:intron 35.0%
ATGTAACTGACCCTACATAT+TGG - chr2_3:14148732-14148751 None:intergenic 35.0%
AGTTACATACTAGTGCTTCT+TGG + chr2_3:14148744-14148763 Msa0279910:intron 35.0%
ACACACACTTCTGATCATAT+TGG + chr2_3:14149041-14149060 Msa0279910:intron 35.0%
AGAGAATGCAGAAAAACATG+GGG - chr2_3:14149150-14149169 None:intergenic 35.0%
TATTACTTGCAGCTGAAGTA+GGG + chr2_3:14149416-14149435 Msa0279910:intron 35.0%
AAGTTGAGAGAAAACTAACG+GGG - chr2_3:14149494-14149513 None:intergenic 35.0%
! TTTTATGCTCTTTGGATAGG+TGG + chr2_3:14149517-14149536 Msa0279910:intron 35.0%
TTTGCTTGATTTCACGACTT+AGG - chr2_3:14149780-14149799 None:intergenic 35.0%
TCAAGCAAAGTTCATCAGTA+AGG + chr2_3:14149791-14149810 Msa0279910:intron 35.0%
TCATTGAGCTAATCCAAACT+GGG - chr2_3:14149817-14149836 None:intergenic 35.0%
TTCATTGAGCTAATCCAAAC+TGG - chr2_3:14149818-14149837 None:intergenic 35.0%
! GAAAACAAAGAGGTGCAAAA+AGG + chr2_3:14149910-14149929 Msa0279910:intron 35.0%
! TTATCCCTTATTTCGGCATT+TGG + chr2_3:14149949-14149968 Msa0279910:intron 35.0%
TTTGCCAAATGCCGAAATAA+GGG - chr2_3:14149956-14149975 None:intergenic 35.0%
! TTTTGCCAAATGCCGAAATA+AGG - chr2_3:14149957-14149976 None:intergenic 35.0%
TCCATGAGTATAACATAAGC+AGG + chr2_3:14150053-14150072 Msa0279910:intron 35.0%
TCCTGCTTATGTTATACTCA+TGG - chr2_3:14150057-14150076 None:intergenic 35.0%
!! CCTTTGTTTCTTTTGCTTCT+GGG - chr2_3:14150153-14150172 None:intergenic 35.0%
!! TCCTTTGTTTCTTTTGCTTC+TGG - chr2_3:14150154-14150173 None:intergenic 35.0%
GCAAAAGAAACAAAGGAAAG+TGG + chr2_3:14150157-14150176 Msa0279910:intron 35.0%
TTTGTAATGCAGATGTACAG+TGG + chr2_3:14150224-14150243 Msa0279910:intron 35.0%
TGGTAATTGCATCTCCAAAT+GGG + chr2_3:14150244-14150263 Msa0279910:CDS 35.0%
AAATTGACTGCAGATGTAGT+GGG + chr2_3:14150282-14150301 Msa0279910:CDS 35.0%
ACAATGCTATGTACTCTCTT+TGG + chr2_3:14150534-14150553 Msa0279910:three_prime_UTR 35.0%
CTTCCATAGCTTCTTCTACA+GGG + chr2_3:14146185-14146204 Msa0279910:CDS 40.0%
ATACAGTGTATTGAGCTGCT+TGG - chr2_3:14146333-14146352 None:intergenic 40.0%
ATGGCATAAGCTGTTTGAAC+TGG - chr2_3:14146399-14146418 None:intergenic 40.0%
GCAGTGTTTGGTAGAATTAG+CGG + chr2_3:14146621-14146640 Msa0279910:intron 40.0%
CAGTTACCGCGTTCAAATTA+TGG + chr2_3:14146846-14146865 Msa0279910:intron 40.0%
ATTAGCCACGAATTTGAGCA+TGG - chr2_3:14146949-14146968 None:intergenic 40.0%
ATGCTCAAATTCGTGGCTAA+TGG + chr2_3:14146948-14146967 Msa0279910:intron 40.0%
ATTCGTGGCTAATGGAGTAT+TGG + chr2_3:14146956-14146975 Msa0279910:intron 40.0%
!! ATGGAGTATTGGAGTTACGT+TGG + chr2_3:14146967-14146986 Msa0279910:intron 40.0%
!! ATGTGTTGTTGTTTGGTAGG+TGG + chr2_3:14147382-14147401 Msa0279910:intron 40.0%
GTGGATACATACGTGAAAAG+TGG + chr2_3:14147401-14147420 Msa0279910:CDS 40.0%
TACATACGTGAAAAGTGGCA+TGG + chr2_3:14147406-14147425 Msa0279910:CDS 40.0%
! TAGGCCGACAATTTTGAACA+TGG + chr2_3:14147597-14147616 Msa0279910:intron 40.0%
TTGTCTTGGTAGGTATCCAA+AGG - chr2_3:14147789-14147808 None:intergenic 40.0%
CACTTGAGAATTGTCTTGGT+AGG - chr2_3:14147799-14147818 None:intergenic 40.0%
TGCACACTTGAGAATTGTCT+TGG - chr2_3:14147803-14147822 None:intergenic 40.0%
GAATTGCATACAAGGCTTTC+TGG - chr2_3:14147898-14147917 None:intergenic 40.0%
! AAAGCCTTGTATGCAATTCC+TGG + chr2_3:14147899-14147918 Msa0279910:intron 40.0%
TTCACCAGGAATTGCATACA+AGG - chr2_3:14147906-14147925 None:intergenic 40.0%
GGAATCCATAATCCAAGAGA+AGG + chr2_3:14148212-14148231 Msa0279910:CDS 40.0%
!! ACTAGCCTTCTCTTGGATTA+TGG - chr2_3:14148220-14148239 None:intergenic 40.0%
CAAACAACAGGAGAAAAAGC+AGG - chr2_3:14148310-14148329 None:intergenic 40.0%
AAATCAGTACAAAGGTGGTC+TGG + chr2_3:14148377-14148396 Msa0279910:CDS 40.0%
TTACTTGTAGCTCAACTGGT+TGG + chr2_3:14148498-14148517 Msa0279910:intron 40.0%
!! TATGTTTCTTGGTGATGCTG+AGG + chr2_3:14148543-14148562 Msa0279910:CDS 40.0%
TAGTAGAAACATGCTTCAGG+TGG - chr2_3:14148857-14148876 None:intergenic 40.0%
AGGTGGAGTCGCATTTATAA+GGG - chr2_3:14148886-14148905 None:intergenic 40.0%
AAGGTGGAGTCGCATTTATA+AGG - chr2_3:14148887-14148906 None:intergenic 40.0%
GAGAATGCAGAAAAACATGG+GGG - chr2_3:14149149-14149168 None:intergenic 40.0%
! AACTTACCAAGGCTTGGTAT+TGG - chr2_3:14149339-14149358 None:intergenic 40.0%
ATACGCAACATCTCAATTGC+AGG - chr2_3:14149365-14149384 None:intergenic 40.0%
GTATTACTTGCAGCTGAAGT+AGG + chr2_3:14149415-14149434 Msa0279910:intron 40.0%
TGGTTGACAATCACACTCAT+TGG + chr2_3:14149537-14149556 Msa0279910:intron 40.0%
TTGCAATTGCATCAGACTTC+AGG - chr2_3:14150019-14150038 None:intergenic 40.0%
CCCAGAAGCAAAAGAAACAA+AGG + chr2_3:14150150-14150169 Msa0279910:intron 40.0%
GTGGTAATTGCATCTCCAAA+TGG + chr2_3:14150243-14150262 Msa0279910:CDS 40.0%
!!! TCCAAATGGGTTGAACGTTT+TGG + chr2_3:14150257-14150276 Msa0279910:CDS 40.0%
TCCAAAACGTTCAACCCATT+TGG - chr2_3:14150261-14150280 None:intergenic 40.0%
CAAATTGACTGCAGATGTAG+TGG + chr2_3:14150281-14150300 Msa0279910:CDS 40.0%
TAGGGATGTTACACTTACAG+TGG + chr2_3:14150373-14150392 Msa0279910:three_prime_UTR 40.0%
ACATAGCATTGTCGCATAAC+AGG - chr2_3:14150526-14150545 None:intergenic 40.0%
!! TTTTAGTGGATAAGGGAGGG+AGG - chr2_3:14146120-14146139 None:intergenic 45.0%
GCTTCCATAGCTTCTTCTAC+AGG + chr2_3:14146184-14146203 Msa0279910:CDS 45.0%
AAGCCCTGTAGAAGAAGCTA+TGG - chr2_3:14146191-14146210 None:intergenic 45.0%
GGTAACCATGCTCAAATTCG+TGG + chr2_3:14146941-14146960 Msa0279910:intron 45.0%
!! GAGTATTGGAGTTACGTTGG+TGG + chr2_3:14146970-14146989 Msa0279910:intron 45.0%
GTGAAAAGTGGCATGGTTGT+AGG + chr2_3:14147413-14147432 Msa0279910:CDS 45.0%
AAGTGGCATGGTTGTAGGAT+TGG + chr2_3:14147418-14147437 Msa0279910:CDS 45.0%
AGTGGCATGGTTGTAGGATT+GGG + chr2_3:14147419-14147438 Msa0279910:CDS 45.0%
GGTATGGCCATTCAGCATTT+AGG + chr2_3:14147458-14147477 Msa0279910:CDS 45.0%
TTGGCGACCTAAATGCTGAA+TGG - chr2_3:14147468-14147487 None:intergenic 45.0%
AAGTGCAAGTGAAGCAGCAA+AGG + chr2_3:14147755-14147774 Msa0279910:CDS 45.0%
!! GTTGCATTTGATGATGCCGA+TGG + chr2_3:14148135-14148154 Msa0279910:CDS 45.0%
ATGCCGATGGTGTAGAAGAA+GGG + chr2_3:14148148-14148167 Msa0279910:CDS 45.0%
TGTCCCTTCTTCTACACCAT+CGG - chr2_3:14148154-14148173 None:intergenic 45.0%
ACGACGGAAATTGCAAAGTG+AGG + chr2_3:14148191-14148210 Msa0279910:CDS 45.0%
! CAGTATGGACTGCAAACAAC+AGG - chr2_3:14148322-14148341 None:intergenic 45.0%
GGGGACATTAGAAAACCTCT+TGG - chr2_3:14149130-14149149 None:intergenic 45.0%
TGTGGAGAAGACCAGCTATT+GGG + chr2_3:14149235-14149254 Msa0279910:CDS 45.0%
TTTCCACTAGTCACAGGAGA+AGG + chr2_3:14149282-14149301 Msa0279910:CDS 45.0%
ACATCTCCAATACCAAGCCT+TGG + chr2_3:14149330-14149349 Msa0279910:CDS 45.0%
ATTGCAGGCAGAACTTACCA+AGG - chr2_3:14149350-14149369 None:intergenic 45.0%
!! ATTGATGGTGTTGCAGACCA+TGG + chr2_3:14149454-14149473 Msa0279910:CDS 45.0%
! GGGTTTTCGATATGACACCA+TGG - chr2_3:14149474-14149493 None:intergenic 45.0%
TTCATCAGTAAGGCCCAGTT+TGG + chr2_3:14149801-14149820 Msa0279910:intron 45.0%
TCATCGAGACAAGAGCGAGT+GGG - chr2_3:14146295-14146314 None:intergenic 50.0%
CAGTGTATTGAGCTGCTTGG+AGG - chr2_3:14146330-14146349 None:intergenic 50.0%
GTGGCATGGTTGTAGGATTG+GGG + chr2_3:14147420-14147439 Msa0279910:CDS 50.0%
ATGGTTGTAGGATTGGGGTC+TGG + chr2_3:14147425-14147444 Msa0279910:CDS 50.0%
GTCTGGTCATGCTTCTGGTA+TGG + chr2_3:14147442-14147461 Msa0279910:CDS 50.0%
TTAGGTCGCCAACTTCGTCA+TGG + chr2_3:14147476-14147495 Msa0279910:CDS 50.0%
AAAGGAGGAAGAGCTCACGT+GGG - chr2_3:14147527-14147546 None:intergenic 50.0%
CAAGTGAAGCAGCAAAGGCT+GGG + chr2_3:14147760-14147779 Msa0279910:CDS 50.0%
AGCAAAGGCTGGGATTCCTT+TGG + chr2_3:14147770-14147789 Msa0279910:CDS 50.0%
GATGCCGATGGTGTAGAAGA+AGG + chr2_3:14148147-14148166 Msa0279910:CDS 50.0%
CAGTACAAAGGTGGTCTGGA+AGG + chr2_3:14148381-14148400 Msa0279910:CDS 50.0%
GTGTGGAGAAGACCAGCTAT+TGG + chr2_3:14149234-14149253 Msa0279910:CDS 50.0%
AGTGGAAAGTCACCACCTAG+TGG - chr2_3:14149270-14149289 None:intergenic 50.0%
GGTGACTTTCCACTAGTCAC+AGG + chr2_3:14149276-14149295 Msa0279910:CDS 50.0%
TGTCCTTCTCCTGTGACTAG+TGG - chr2_3:14149288-14149307 None:intergenic 50.0%
AGGCAGAACTTACCAAGGCT+TGG - chr2_3:14149345-14149364 None:intergenic 50.0%
!! GACTGCAGATGTAGTGGGTT+AGG + chr2_3:14150287-14150306 Msa0279910:CDS 50.0%
AGTGGATAAGGGAGGGAGGT+AGG - chr2_3:14146116-14146135 None:intergenic 55.0%
GTCATCGAGACAAGAGCGAG+TGG - chr2_3:14146296-14146315 None:intergenic 55.0%
TTGGGGTCTGGTCATGCTTC+TGG + chr2_3:14147437-14147456 Msa0279910:CDS 55.0%
GAAAGGAGGAAGAGCTCACG+TGG - chr2_3:14147528-14147547 None:intergenic 55.0%
GCAAGTGAAGCAGCAAAGGC+TGG + chr2_3:14147759-14147778 Msa0279910:CDS 55.0%
AGACCAGCTATTGGGCAAGC+AGG + chr2_3:14149243-14149262 Msa0279910:CDS 55.0%
ATTGGGCAAGCAGGTCCACT+AGG + chr2_3:14149252-14149271 Msa0279910:CDS 55.0%
AGTTGCGCGTGAGTGCATGT+AGG - chr2_3:14150434-14150453 None:intergenic 55.0%
GGACCTGCTTGCCCAATAGC+TGG - chr2_3:14149249-14149268 None:intergenic 60.0%
GGGCAAGCAGGTCCACTAGG+TGG + chr2_3:14149255-14149274 Msa0279910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14146102 14150658 14146102 ID=Msa0279910;Name=Msa0279910
chr2_3 mRNA 14146102 14150658 14146102 ID=Msa0279910-mRNA-1;Parent=Msa0279910;Name=Msa0279910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=79|1|1|1|1|1|9|350|293
chr2_3 exon 14146102 14146348 14146102 ID=Msa0279910-mRNA-1:exon:5952;Parent=Msa0279910-mRNA-1
chr2_3 exon 14147401 14147528 14147401 ID=Msa0279910-mRNA-1:exon:5953;Parent=Msa0279910-mRNA-1
chr2_3 exon 14147746 14147815 14147746 ID=Msa0279910-mRNA-1:exon:5954;Parent=Msa0279910-mRNA-1
chr2_3 exon 14148129 14148233 14148129 ID=Msa0279910-mRNA-1:exon:5955;Parent=Msa0279910-mRNA-1
chr2_3 exon 14148333 14148428 14148333 ID=Msa0279910-mRNA-1:exon:5956;Parent=Msa0279910-mRNA-1
chr2_3 exon 14148508 14148564 14148508 ID=Msa0279910-mRNA-1:exon:5957;Parent=Msa0279910-mRNA-1
chr2_3 exon 14149234 14149351 14149234 ID=Msa0279910-mRNA-1:exon:5958;Parent=Msa0279910-mRNA-1
chr2_3 exon 14149428 14149494 14149428 ID=Msa0279910-mRNA-1:exon:5959;Parent=Msa0279910-mRNA-1
chr2_3 exon 14150236 14150658 14150236 ID=Msa0279910-mRNA-1:exon:5960;Parent=Msa0279910-mRNA-1
chr2_3 five_prime_UTR 14146102 14146180 14146102 ID=Msa0279910-mRNA-1:five_prime_utr;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14146181 14146348 14146181 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14147401 14147528 14147401 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14147746 14147815 14147746 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14148129 14148233 14148129 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14148333 14148428 14148333 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14148508 14148564 14148508 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14149234 14149351 14149234 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14149428 14149494 14149428 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 CDS 14150236 14150308 14150236 ID=Msa0279910-mRNA-1:cds;Parent=Msa0279910-mRNA-1
chr2_3 three_prime_UTR 14150309 14150658 14150309 ID=Msa0279910-mRNA-1:three_prime_utr;Parent=Msa0279910-mRNA-1
Gene Sequence

>Msa0279910

ATGGCTTCCATAGCTTCTTCTACAGGGCTTCTTCTGAATTCACCAACTTCTTTATTGGAAAGAAGAAGAAGAAGAAGGAAAAGAATCAGTCCCAATTTTGTTAGAATGATGCCCACTCGCTCTTGTCTCGATGACACTTCTTCTCTCCTCCAAGCAGCTCAATACACTGTGGATACATACGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTAGGTCGCCAACTTCGTCATGGTAATTTGAAAGACATAGTAGGGATTCCCACGTCTGTTGCAAGTGCAAGTGAAGCAGCAAAGGCTGGGATTCCTTTGGATACCTACCAAGACAATTCTCAAATTGATGTTGCATTTGATGATGCCGATGGTGTAGAAGAAGGGACATTTGTTGCTATAATTGGACGACGGAAATTGCAAAGTGAGGAATCCATAATCCAAGAGAAGTCCATACTGAATAACGCCAATAAGCTAGTGTTCATTATTGAAGAAAATCAGTACAAAGGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTCTCTCAACTGGTTGGCAACTGCTGAAGAGATTGACGATATGTTTCTTGGTGATGCTGAGGTGTGGAGAAGACCAGCTATTGGGCAAGCAGGTCCACTAGGTGGTGACTTTCCACTAGTCACAGGAGAAGGACATAATGTTCTTGATGTTATCTTCACATCTCCAATACCAAGCCTTGCTGAAGTAGGGAAAATCCTTGATAAAATTGATGGTGTTGCAGACCATGGTGTCATATCGAAAACCCCATGTACAGTGGTAATTGCATCTCCAAATGGGTTGAACGTTTTGGACAAATTGACTGCAGATGTAGTGGGTTAG

Protein sequence

>Msa0279910

MASIASSTGLLLNSPTSLLERRRRRRKRISPNFVRMMPTRSCLDDTSSLLQAAQYTVDTYVKSGMVVGLGSGHASGMAIQHLGRQLRHGNLKDIVGIPTSVASASEAAKAGIPLDTYQDNSQIDVAFDDADGVEEGTFVAIIGRRKLQSEESIIQEKSILNNANKLVFIIEENQYKGGLEGSIPVLIQSLNWLATAEEIDDMFLGDAEVWRRPAIGQAGPLGGDFPLVTGEGHNVLDVIFTSPIPSLAEVGKILDKIDGVADHGVISKTPCTVVIASPNGLNVLDKLTADVVG*