AlfalfaGEDB | Msa0364000

M. sativa cultivar zhongmu-4 / Msa0364000

KEGG: K12880|K13379
GO: GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234
PFAM: PF12894.10

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364000	PNY16998.1	98.913	92	1	0	1	92	125	216	5.14e-61	195

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364000	sp\|Q9FKT5\|THOC3_ARATH	83.871	93	14	1	1	92	223	315	1.46e-52	169

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364000	A0A2K3PNX8	98.913	92	1	0	1	92	125	216	2.46e-61	195

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0364000	0.851780	7.103017e-61	-8.615850e-47
Msa0028640	Msa0364000	0.812165	4.862296e-51	-8.615850e-47
Msa0040450	Msa0364000	0.809415	1.913416e-50	-8.615850e-47
Msa0054480	Msa0364000	0.819992	8.678293e-53	-8.615850e-47
Msa0072370	Msa0364000	0.804631	1.968766e-49	-8.615850e-47
Msa0110970	Msa0364000	0.824809	6.600099e-54	-8.615850e-47
Msa0128020	Msa0364000	0.801863	7.366813e-49	-8.615850e-47
Msa0136070	Msa0364000	0.801730	7.843187e-49	-8.615850e-47
Msa0140780	Msa0364000	0.813324	2.711181e-51	-8.615850e-47
Msa0150820	Msa0364000	0.806891	6.600754e-50	-8.615850e-47
Msa0157290	Msa0364000	0.851757	7.208498e-61	-8.615850e-47
Msa0160550	Msa0364000	0.805920	1.057245e-49	-8.615850e-47
Msa0169860	Msa0364000	0.800069	1.713021e-48	-8.615850e-47
Msa0200260	Msa0364000	0.801374	9.280751e-49	-8.615850e-47
Msa0243100	Msa0364000	0.831455	1.653411e-55	-8.615850e-47
Msa0259370	Msa0364000	0.813729	2.208291e-51	-8.615850e-47
Msa0261340	Msa0364000	0.807186	5.716625e-50	-8.615850e-47
Msa0284410	Msa0364000	0.805668	1.194447e-49	-8.615850e-47
Msa0287650	Msa0364000	0.830960	2.188216e-55	-8.615850e-47
Msa0297050	Msa0364000	0.805638	1.211858e-49	-8.615850e-47
Msa0309770	Msa0364000	0.803955	2.722366e-49	-8.615850e-47
Msa0336040	Msa0364000	-0.828747	7.571398e-55	-8.615850e-47
Msa0336420	Msa0364000	0.814590	1.425654e-51	-8.615850e-47
Msa0359030	Msa0364000	0.803269	3.778701e-49	-8.615850e-47
Msa0364000	Msa0397750	0.812784	3.562446e-51	-8.615850e-47
Msa0364000	Msa0398710	0.808360	3.218418e-50	-8.615850e-47
Msa0364000	Msa0410650	0.814386	1.582221e-51	-8.615850e-47
Msa0364000	Msa0417270	0.813773	2.160333e-51	-8.615850e-47
Msa0364000	Msa0417880	0.802635	5.110248e-49	-8.615850e-47
Msa0364000	Msa0428590	0.806751	7.064290e-50	-8.615850e-47
Msa0364000	Msa0435390	0.802904	4.496187e-49	-8.615850e-47
Msa0364000	Msa0436490	-0.804848	1.773961e-49	-8.615850e-47
Msa0364000	Msa0469160	0.800128	1.666570e-48	-8.615850e-47
Msa0364000	Msa0481530	0.822973	1.778106e-53	-8.615850e-47
Msa0364000	Msa0484780	0.801644	8.168174e-49	-8.615850e-47
Msa0364000	Msa0498650	0.810719	1.002061e-50	-8.615850e-47
Msa0364000	Msa0507680	0.802019	6.841992e-49	-8.615850e-47
Msa0364000	Msa0512900	0.804685	1.918093e-49	-8.615850e-47
Msa0364000	Msa0523460	0.806401	8.374613e-50	-8.615850e-47
Msa0364000	Msa0529890	0.832344	9.973112e-56	-8.615850e-47
Msa0364000	Msa0547360	0.807237	5.575381e-50	-8.615850e-47
Msa0364000	Msa0563840	0.806262	8.957572e-50	-8.615850e-47
Msa0364000	Msa0577500	0.822802	1.949484e-53	-8.615850e-47
Msa0364000	Msa0585000	-0.803042	4.210266e-49	-8.615850e-47
Msa0364000	Msa0585300	0.803676	3.110833e-49	-8.615850e-47
Msa0364000	Msa0585560	0.830265	3.236136e-55	-8.615850e-47
Msa0364000	Msa0602240	0.805043	1.615056e-49	-8.615850e-47
Msa0364000	Msa0602250	0.805344	1.397000e-49	-8.615850e-47
Msa0364000	Msa0610430	0.820152	7.975023e-53	-8.615850e-47
Msa0364000	Msa0625720	0.830086	3.578719e-55	-8.615850e-47
Msa0364000	Msa0643220	0.822976	1.775891e-53	-8.615850e-47
Msa0364000	Msa0657970	0.806261	8.961500e-50	-8.615850e-47
Msa0364000	Msa0663390	0.831408	1.697991e-55	-8.615850e-47
Msa0364000	Msa0682900	0.819847	9.368666e-53	-8.615850e-47
Msa0364000	Msa0683510	0.812646	3.818840e-51	-8.615850e-47
Msa0364000	Msa0692040	-0.801042	1.085215e-48	-8.615850e-47
Msa0364000	Msa0708520	0.819047	1.425701e-52	-8.615850e-47
Msa0364000	Msa0709500	0.831413	1.692741e-55	-8.615850e-47
Msa0364000	Msa0715700	0.819429	1.166822e-52	-8.615850e-47
Msa0364000	Msa0716840	0.819742	9.900543e-53	-8.615850e-47
Msa0364000	Msa0727710	0.801278	9.711391e-49	-8.615850e-47
Msa0364000	Msa0743720	0.810192	1.302323e-50	-8.615850e-47
Msa0364000	Msa0750880	0.816722	4.777079e-52	-8.615850e-47
Msa0364000	Msa0762970	0.810799	9.630522e-51	-8.615850e-47
Msa0364000	Msa0767300	0.815436	9.255376e-52	-8.615850e-47
Msa0364000	Msa0777570	-0.804432	2.166721e-49	-8.615850e-47
Msa0364000	Msa0790850	0.827256	1.729611e-54	-8.615850e-47
Msa0364000	Msa0793800	0.815904	7.278904e-52	-8.615850e-47
Msa0364000	Msa0796530	0.812573	3.961574e-51	-8.615850e-47
Msa0364000	Msa0801760	0.821148	4.709009e-53	-8.615850e-47
Msa0364000	Msa0803890	0.821719	3.476892e-53	-8.615850e-47
Msa0364000	Msa0808270	0.811380	7.205281e-51	-8.615850e-47
Msa0364000	Msa0844240	0.802694	4.968935e-49	-8.615850e-47
Msa0364000	Msa0844570	0.807063	6.068875e-50	-8.615850e-47
Msa0364000	Msa0867890	0.805891	1.072238e-49	-8.615850e-47
Msa0364000	Msa0871270	0.803913	2.778454e-49	-8.615850e-47
Msa0364000	Msa0880140	0.847962	8.294978e-60	-8.615850e-47
Msa0364000	Msa0902760	0.813275	2.779247e-51	-8.615850e-47
Msa0364000	Msa0933100	0.802172	6.365589e-49	-8.615850e-47
Msa0364000	Msa0938220	0.803643	3.161126e-49	-8.615850e-47
Msa0364000	Msa0947660	0.811793	5.861835e-51	-8.615850e-47
Msa0364000	Msa0959360	0.821353	4.225161e-53	-8.615850e-47
Msa0364000	Msa0968680	0.812606	3.895958e-51	-8.615850e-47
Msa0364000	Msa0969520	0.814295	1.656612e-51	-8.615850e-47
Msa0364000	Msa0974070	0.811426	7.043864e-51	-8.615850e-47
Msa0364000	Msa1004550	0.824038	1.002333e-53	-8.615850e-47
Msa0364000	Msa1004600	0.827941	1.184429e-54	-8.615850e-47
Msa0364000	Msa1010350	0.806145	9.483145e-50	-8.615850e-47
Msa0364000	Msa1013400	0.813588	2.371941e-51	-8.615850e-47
Msa0364000	Msa1014540	0.814668	1.369978e-51	-8.615850e-47
Msa0364000	Msa1040400	0.805412	1.352038e-49	-8.615850e-47
Msa0364000	Msa1075540	0.804210	2.410275e-49	-8.615850e-47
Msa0364000	Msa1082500	0.807910	4.012482e-50	-8.615850e-47
Msa0364000	Msa1085200	0.810931	9.016747e-51	-8.615850e-47
Msa0364000	Msa1093530	0.813226	2.849445e-51	-8.615850e-47
Msa0364000	Msa1098400	0.800789	1.222446e-48	-8.615850e-47
Msa0364000	Msa1108160	0.812471	4.169908e-51	-8.615850e-47
Msa0364000	Msa1121440	0.811871	5.636254e-51	-8.615850e-47
Msa0364000	Msa1125760	0.832458	9.343785e-56	-8.615850e-47
Msa0364000	Msa1131220	0.818266	2.144621e-52	-8.615850e-47
Msa0364000	Msa1147900	0.833283	5.829114e-56	-8.615850e-47
Msa0364000	Msa1151910	0.818080	2.362450e-52	-8.615850e-47
Msa0364000	Msa1154280	0.807004	6.245930e-50	-8.615850e-47
Msa0364000	Msa1168160	0.810902	9.147828e-51	-8.615850e-47
Msa0364000	Msa1171360	0.828754	7.540454e-55	-8.615850e-47
Msa0364000	Msa1172670	0.815234	1.026058e-51	-8.615850e-47
Msa0364000	Msa1179460	0.809059	2.281757e-50	-8.615850e-47
Msa0364000	Msa1189070	0.804883	1.744532e-49	-8.615850e-47
Msa0364000	Msa1199220	0.810123	1.348172e-50	-8.615850e-47
Msa0364000	Msa1209460	0.821315	4.309207e-53	-8.615850e-47
Msa0364000	Msa1214890	0.801705	7.936310e-49	-8.615850e-47
Msa0364000	Msa1218600	0.807367	5.233514e-50	-8.615850e-47
Msa0364000	Msa1238930	0.810482	1.127660e-50	-8.615850e-47
Msa0364000	Msa1242230	0.803752	3.000386e-49	-8.615850e-47
Msa0364000	Msa1242240	0.825717	4.026031e-54	-8.615850e-47
Msa0364000	Msa1259490	-0.805437	1.335639e-49	-8.615850e-47
Msa0364000	Msa1283840	0.816484	5.399664e-52	-8.615850e-47
Msa0364000	Msa1283860	0.811854	5.683858e-51	-8.615850e-47
Msa0364000	Msa1284260	0.832516	9.041804e-56	-8.615850e-47
Msa0364000	Msa1284680	0.804655	1.946610e-49	-8.615850e-47
Msa0364000	Msa1294480	0.804863	1.761505e-49	-8.615850e-47
Msa0364000	Msa1300490	0.808518	2.977641e-50	-8.615850e-47
Msa0364000	Msa1303250	0.812304	4.535070e-51	-8.615850e-47
Msa0364000	Msa1305340	0.813537	2.434719e-51	-8.615850e-47
Msa0364000	Msa1306840	0.822414	2.399892e-53	-8.615850e-47
Msa0364000	Msa1322860	0.811910	5.525973e-51	-8.615850e-47
Msa0364000	Msa1327050	0.819851	9.349632e-53	-8.615850e-47
Msa0364000	Msa1336710	0.809567	1.775615e-50	-8.615850e-47
Msa0364000	Msa1346370	0.801504	8.726866e-49	-8.615850e-47
Msa0364000	Msa1353060	0.818562	1.837448e-52	-8.615850e-47
Msa0364000	Msa1353980	0.814627	1.398973e-51	-8.615850e-47
Msa0364000	Msa1359040	0.809645	1.707845e-50	-8.615850e-47
Msa0364000	Msa1374550	0.807522	4.850690e-50	-8.615850e-47
Msa0364000	Msa1385670	0.822606	2.164907e-53	-8.615850e-47
Msa0364000	Msa1386780	0.810962	8.881262e-51	-8.615850e-47
Msa0364000	Msa1423350	0.820283	7.444678e-53	-8.615850e-47
Msa0364000	Msa1429150	0.802657	5.055267e-49	-8.615850e-47
Msa0364000	Msa1466540	0.817792	2.744113e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364000	MtrunA17_Chr3g0103361	100.000	92	0	0	1	92	222	313	1.46e-64	197

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364000	AT5G56130.1	83.871	93	14	1	1	92	223	315	1.49e-53	169

Find 38 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGCAAGTACATTGTATTT+AGG	0.212077	3_1:+56677410	None:intergenic
GTGTCAGGTAGTTAATATTT+AGG	0.285168	3_1:-56676945	Msa0364000:three_prime_UTR
ACAATTAGTTTCAACCATAC+TGG	0.312869	3_1:-56678012	Msa0364000:CDS
TGTCAGCTTGTGGGTTATTT+CGG	0.319330	3_1:-56678191	Msa0364000:five_prime_UTR
GTTAATATTTAGGCTGTGTT+TGG	0.361996	3_1:-56676935	Msa0364000:three_prime_UTR
TCTTCACAGAAAATATGAAA+TGG	0.407288	3_1:-56677077	Msa0364000:three_prime_UTR
CAGTACATCATATTCCTTGT+AGG	0.413376	3_1:-56677460	Msa0364000:CDS
GATTTCTTACTTTCAGTGTC+AGG	0.416013	3_1:-56676960	Msa0364000:three_prime_UTR
CAATTAGTTTCAACCATACT+GGG	0.443807	3_1:-56678011	Msa0364000:CDS
ATTCCACTCAACACTATTCA+TGG	0.456424	3_1:+56677433	None:intergenic
TTCTTAACTACCAAGGCAAA+TGG	0.457268	3_1:+56677212	None:intergenic
CTTCACAGAAAATATGAAAT+GGG	0.469740	3_1:-56677076	Msa0364000:three_prime_UTR
TTGATAGAATGAGAAGTGTT+TGG	0.470988	3_1:-56676861	Msa0364000:three_prime_UTR
TACAATGTACTTGCATATGC+TGG	0.472545	3_1:-56677404	Msa0364000:CDS
AAGCAATCAAGTCCCCAGTA+TGG	0.482571	3_1:+56677998	None:intergenic
TGTTTCTCAGATGGCCTGTC+CGG	0.488476	3_1:-56678035	Msa0364000:intron
TATCAACCTATGTGCTAAGA+AGG	0.492640	3_1:-56677101	Msa0364000:three_prime_UTR
TATGGTTGAAACTAATTGTC+CGG	0.499723	3_1:+56678016	None:intergenic
CTATTCATGGCAGCCCTACA+AGG	0.501447	3_1:+56677446	None:intergenic
GTGACAGTCCAATGTTCATA+CGG	0.510916	3_1:-56677489	Msa0364000:intron
GGCGTACAAACCATTTGCCT+TGG	0.511374	3_1:-56677222	Msa0364000:three_prime_UTR
AACTTACTCGAGCTTTGTAA+AGG	0.513452	3_1:+56678150	None:intergenic
ATGAAATGGGATGGATGTAA+TGG	0.530267	3_1:-56677063	Msa0364000:three_prime_UTR
TGACAGTCCAATGTTCATAC+GGG	0.537123	3_1:-56677488	Msa0364000:intron
ACAGAAAATATGAAATGGGA+TGG	0.545409	3_1:-56677072	Msa0364000:three_prime_UTR
AGTACATCATATTCCTTGTA+GGG	0.547208	3_1:-56677459	Msa0364000:CDS
GAAGATCCTTCTTAGCACAT+AGG	0.556730	3_1:+56677095	None:intergenic
AAATAACCCACAAGCTGACA+AGG	0.562424	3_1:+56678194	None:intergenic
TTGAAACTAATTGTCCGGAC+AGG	0.589710	3_1:+56678021	None:intergenic
TTTCGGAAATGCTTTGTGTG+CGG	0.599990	3_1:-56678174	Msa0364000:exon
TCTGAATATTGCTAGTTGCA+AGG	0.606952	3_1:-56677146	Msa0364000:three_prime_UTR
GTTCGCATTCTTAACTACCA+AGG	0.610708	3_1:+56677205	None:intergenic
AACAAGTATCAGGCTGACGA+AGG	0.633197	3_1:-56677371	Msa0364000:intron
CTGCCATGAATAGTGTTGAG+TGG	0.656405	3_1:-56677436	Msa0364000:CDS
AATAACCCACAAGCTGACAA+GGG	0.681570	3_1:+56678195	None:intergenic
GTAGTTAAGAATGCGAACGA+AGG	0.700961	3_1:-56677200	Msa0364000:three_prime_UTR
GACAGTCCAATGTTCATACG+GGG	0.704919	3_1:-56677487	Msa0364000:intron
AATTAGTTTCAACCATACTG+GGG	0.712478	3_1:-56678010	Msa0364000:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAAATTAGATATTTTACA+AGG	+	chr3_1:56677139-56677158	None:intergenic	10.0%
!!	TAAAAAAATATGTATATTAC+AGG	-	chr3_1:56677356-56677375	Msa0364000:intron	10.0%
!!!	AAAAAATTAGATATTTTACA+AGG	+	chr3_1:56677139-56677158	None:intergenic	10.0%
!!	TAAAAAAATATGTATATTAC+AGG	-	chr3_1:56677356-56677375	Msa0364000:intron	10.0%
!!!	TTTTTACTTAAACATGTTTT+TGG	-	chr3_1:56677112-56677131	Msa0364000:three_prime_UTR	15.0%
!!!	TTTGTTTTGTTTTTAGATTT+TGG	-	chr3_1:56677991-56678010	Msa0364000:CDS	15.0%
!!!	TTTTTACTTAAACATGTTTT+TGG	-	chr3_1:56677112-56677131	Msa0364000:three_prime_UTR	15.0%
!!!	TTTGTTTTGTTTTTAGATTT+TGG	-	chr3_1:56677991-56678010	Msa0364000:CDS	15.0%
!!	TTGAATACAATAAACAAACA+TGG	+	chr3_1:56676914-56676933	None:intergenic	20.0%
!!!	TTTTAGTCCATTTTGTTATA+AGG	-	chr3_1:56677162-56677181	Msa0364000:three_prime_UTR	20.0%
!!!	TTTAGTCCATTTTGTTATAA+GGG	-	chr3_1:56677163-56677182	Msa0364000:three_prime_UTR	20.0%
!!!	GAAAATGGTTTAAATGTTTT+TGG	+	chr3_1:56677438-56677457	None:intergenic	20.0%
!!	TTGAATACAATAAACAAACA+TGG	+	chr3_1:56676914-56676933	None:intergenic	20.0%
!!!	TTTTAGTCCATTTTGTTATA+AGG	-	chr3_1:56677162-56677181	Msa0364000:three_prime_UTR	20.0%
!!!	TTTAGTCCATTTTGTTATAA+GGG	-	chr3_1:56677163-56677182	Msa0364000:three_prime_UTR	20.0%
!!!	GAAAATGGTTTAAATGTTTT+TGG	+	chr3_1:56677438-56677457	None:intergenic	20.0%
!	ATAAACAAACATGGAAGTTA+GGG	+	chr3_1:56676905-56676924	None:intergenic	25.0%
!	AATAAACAAACATGGAAGTT+AGG	+	chr3_1:56676906-56676925	None:intergenic	25.0%
!!!	TATTCAACTTTTGTTTTTCG+AGG	-	chr3_1:56676927-56676946	Msa0364000:three_prime_UTR	25.0%
!!!	TTAGTCCATTTTGTTATAAG+GGG	-	chr3_1:56677164-56677183	Msa0364000:three_prime_UTR	25.0%
!	GGACTAAAAACAAAATAATG+AGG	-	chr3_1:56677377-56677396	Msa0364000:CDS	25.0%
!	AATAATGAGGACAAAAATGA+AGG	-	chr3_1:56677390-56677409	Msa0364000:CDS	25.0%
!	TGAAGGAAAAAACAAATTAC+AGG	-	chr3_1:56677407-56677426	Msa0364000:CDS	25.0%
!	GAAGGAAAAAACAAATTACA+GGG	-	chr3_1:56677408-56677427	Msa0364000:CDS	25.0%
!!	TGTTTAAGCAAATTTTTGTC+TGG	+	chr3_1:56677460-56677479	None:intergenic	25.0%
!	TATGCAAGTACATTGTATTT+AGG	+	chr3_1:56677620-56677639	None:intergenic	25.0%
!!!	TTTTGAAAATGCTTAGTACT+TGG	-	chr3_1:56677784-56677803	Msa0364000:intron	25.0%
!	TCTTCACAGAAAATATGAAA+TGG	-	chr3_1:56677950-56677969	Msa0364000:intron	25.0%
!	CTTCACAGAAAATATGAAAT+GGG	-	chr3_1:56677951-56677970	Msa0364000:intron	25.0%
!	ATAAACAAACATGGAAGTTA+GGG	+	chr3_1:56676905-56676924	None:intergenic	25.0%
!	AATAAACAAACATGGAAGTT+AGG	+	chr3_1:56676906-56676925	None:intergenic	25.0%
!!!	TATTCAACTTTTGTTTTTCG+AGG	-	chr3_1:56676927-56676946	Msa0364000:three_prime_UTR	25.0%
!!!	TTAGTCCATTTTGTTATAAG+GGG	-	chr3_1:56677164-56677183	Msa0364000:three_prime_UTR	25.0%
!	GGACTAAAAACAAAATAATG+AGG	-	chr3_1:56677377-56677396	Msa0364000:CDS	25.0%
!	AATAATGAGGACAAAAATGA+AGG	-	chr3_1:56677390-56677409	Msa0364000:CDS	25.0%
!	TGAAGGAAAAAACAAATTAC+AGG	-	chr3_1:56677407-56677426	Msa0364000:CDS	25.0%
!	GAAGGAAAAAACAAATTACA+GGG	-	chr3_1:56677408-56677427	Msa0364000:CDS	25.0%
!!	TGTTTAAGCAAATTTTTGTC+TGG	+	chr3_1:56677460-56677479	None:intergenic	25.0%
!	TATGCAAGTACATTGTATTT+AGG	+	chr3_1:56677620-56677639	None:intergenic	25.0%
!!!	TTTTGAAAATGCTTAGTACT+TGG	-	chr3_1:56677784-56677803	Msa0364000:intron	25.0%
!	TCTTCACAGAAAATATGAAA+TGG	-	chr3_1:56677950-56677969	Msa0364000:intron	25.0%
!	CTTCACAGAAAATATGAAAT+GGG	-	chr3_1:56677951-56677970	Msa0364000:intron	25.0%
	AGAATGATATGTTTCTCAGA+TGG	-	chr3_1:56676983-56677002	Msa0364000:three_prime_UTR	30.0%
	TATGGTTGAAACTAATTGTC+CGG	+	chr3_1:56677014-56677033	None:intergenic	30.0%
!	ACAATTAGTTTCAACCATAC+TGG	-	chr3_1:56677015-56677034	Msa0364000:three_prime_UTR	30.0%
!	CAATTAGTTTCAACCATACT+GGG	-	chr3_1:56677016-56677035	Msa0364000:three_prime_UTR	30.0%
!	AATTAGTTTCAACCATACTG+GGG	-	chr3_1:56677017-56677036	Msa0364000:three_prime_UTR	30.0%
	TGCATAAACCAAAACAAAAC+AGG	+	chr3_1:56677223-56677242	None:intergenic	30.0%
	AAGGATTAAAGCGGAAAAAA+TGG	+	chr3_1:56677298-56677317	None:intergenic	30.0%
	CATTCATACAAGGATTAAAG+CGG	+	chr3_1:56677307-56677326	None:intergenic	30.0%
	TGTTTAAGCTCATTCATACA+AGG	+	chr3_1:56677317-56677336	None:intergenic	30.0%
!	GCAAATTTTTGTCTGGAAAA+TGG	+	chr3_1:56677453-56677472	None:intergenic	30.0%
	AGTACATCATATTCCTTGTA+GGG	-	chr3_1:56677568-56677587	Msa0364000:intron	30.0%
	AGATGACAAAAACAAGTATC+AGG	-	chr3_1:56677646-56677665	Msa0364000:intron	30.0%
	ACAGAAAATATGAAATGGGA+TGG	-	chr3_1:56677955-56677974	Msa0364000:intron	30.0%
!!!	ACTTCAGTCTATTTTAGCAT+CGG	-	chr3_1:56678023-56678042	Msa0364000:CDS	30.0%
	GTGTCAGGTAGTTAATATTT+AGG	-	chr3_1:56678082-56678101	Msa0364000:intron	30.0%
	GTTAATATTTAGGCTGTGTT+TGG	-	chr3_1:56678092-56678111	Msa0364000:intron	30.0%
!!	TTGATAGAATGAGAAGTGTT+TGG	-	chr3_1:56678166-56678185	Msa0364000:CDS	30.0%
	AGAATGATATGTTTCTCAGA+TGG	-	chr3_1:56676983-56677002	Msa0364000:three_prime_UTR	30.0%
	TATGGTTGAAACTAATTGTC+CGG	+	chr3_1:56677014-56677033	None:intergenic	30.0%
!	ACAATTAGTTTCAACCATAC+TGG	-	chr3_1:56677015-56677034	Msa0364000:three_prime_UTR	30.0%
!	CAATTAGTTTCAACCATACT+GGG	-	chr3_1:56677016-56677035	Msa0364000:three_prime_UTR	30.0%
!	AATTAGTTTCAACCATACTG+GGG	-	chr3_1:56677017-56677036	Msa0364000:three_prime_UTR	30.0%
	TGCATAAACCAAAACAAAAC+AGG	+	chr3_1:56677223-56677242	None:intergenic	30.0%
	AAGGATTAAAGCGGAAAAAA+TGG	+	chr3_1:56677298-56677317	None:intergenic	30.0%
	CATTCATACAAGGATTAAAG+CGG	+	chr3_1:56677307-56677326	None:intergenic	30.0%
	TGTTTAAGCTCATTCATACA+AGG	+	chr3_1:56677317-56677336	None:intergenic	30.0%
!	GCAAATTTTTGTCTGGAAAA+TGG	+	chr3_1:56677453-56677472	None:intergenic	30.0%
	AGTACATCATATTCCTTGTA+GGG	-	chr3_1:56677568-56677587	Msa0364000:intron	30.0%
	AGATGACAAAAACAAGTATC+AGG	-	chr3_1:56677646-56677665	Msa0364000:intron	30.0%
	ACAGAAAATATGAAATGGGA+TGG	-	chr3_1:56677955-56677974	Msa0364000:intron	30.0%
!!!	ACTTCAGTCTATTTTAGCAT+CGG	-	chr3_1:56678023-56678042	Msa0364000:CDS	30.0%
	GTGTCAGGTAGTTAATATTT+AGG	-	chr3_1:56678082-56678101	Msa0364000:intron	30.0%
	GTTAATATTTAGGCTGTGTT+TGG	-	chr3_1:56678092-56678111	Msa0364000:intron	30.0%
!!	TTGATAGAATGAGAAGTGTT+TGG	-	chr3_1:56678166-56678185	Msa0364000:CDS	30.0%
!	AACTTACTCGAGCTTTGTAA+AGG	+	chr3_1:56676880-56676899	None:intergenic	35.0%
	AGAGACCCCTTATAACAAAA+TGG	+	chr3_1:56677172-56677191	None:intergenic	35.0%
!!!	CTAGTCATCCTGTTTTGTTT+TGG	-	chr3_1:56677212-56677231	Msa0364000:three_prime_UTR	35.0%
	CAGTACATCATATTCCTTGT+AGG	-	chr3_1:56677567-56677586	Msa0364000:intron	35.0%
	ATTCCACTCAACACTATTCA+TGG	+	chr3_1:56677597-56677616	None:intergenic	35.0%
	TACAATGTACTTGCATATGC+TGG	-	chr3_1:56677623-56677642	Msa0364000:intron	35.0%
	GGAAACACAAGAATCATATG+AGG	-	chr3_1:56677711-56677730	Msa0364000:intron	35.0%
!!	GCAGGTGTTTTTCGAATTTT+TGG	-	chr3_1:56677761-56677780	Msa0364000:intron	35.0%
	TTCTTAACTACCAAGGCAAA+TGG	+	chr3_1:56677818-56677837	None:intergenic	35.0%
	TCTGAATATTGCTAGTTGCA+AGG	-	chr3_1:56677881-56677900	Msa0364000:intron	35.0%
	TATCAACCTATGTGCTAAGA+AGG	-	chr3_1:56677926-56677945	Msa0364000:intron	35.0%
	ATGAAATGGGATGGATGTAA+TGG	-	chr3_1:56677964-56677983	Msa0364000:intron	35.0%
	GATTTCTTACTTTCAGTGTC+AGG	-	chr3_1:56678067-56678086	Msa0364000:intron	35.0%
!	AACTTACTCGAGCTTTGTAA+AGG	+	chr3_1:56676880-56676899	None:intergenic	35.0%
	AGAGACCCCTTATAACAAAA+TGG	+	chr3_1:56677172-56677191	None:intergenic	35.0%
!!!	CTAGTCATCCTGTTTTGTTT+TGG	-	chr3_1:56677212-56677231	Msa0364000:three_prime_UTR	35.0%
	CAGTACATCATATTCCTTGT+AGG	-	chr3_1:56677567-56677586	Msa0364000:intron	35.0%
	ATTCCACTCAACACTATTCA+TGG	+	chr3_1:56677597-56677616	None:intergenic	35.0%
	TACAATGTACTTGCATATGC+TGG	-	chr3_1:56677623-56677642	Msa0364000:intron	35.0%
	GGAAACACAAGAATCATATG+AGG	-	chr3_1:56677711-56677730	Msa0364000:intron	35.0%
!!	GCAGGTGTTTTTCGAATTTT+TGG	-	chr3_1:56677761-56677780	Msa0364000:intron	35.0%
	TTCTTAACTACCAAGGCAAA+TGG	+	chr3_1:56677818-56677837	None:intergenic	35.0%
	TCTGAATATTGCTAGTTGCA+AGG	-	chr3_1:56677881-56677900	Msa0364000:intron	35.0%
	TATCAACCTATGTGCTAAGA+AGG	-	chr3_1:56677926-56677945	Msa0364000:intron	35.0%
	ATGAAATGGGATGGATGTAA+TGG	-	chr3_1:56677964-56677983	Msa0364000:intron	35.0%
	GATTTCTTACTTTCAGTGTC+AGG	-	chr3_1:56678067-56678086	Msa0364000:intron	35.0%
	AATAACCCACAAGCTGACAA+GGG	+	chr3_1:56676835-56676854	None:intergenic	40.0%
	AAATAACCCACAAGCTGACA+AGG	+	chr3_1:56676836-56676855	None:intergenic	40.0%
!	TGTCAGCTTGTGGGTTATTT+CGG	-	chr3_1:56676836-56676855	Msa0364000:three_prime_UTR	40.0%
	TTTCGGAAATGCTTTGTGTG+CGG	-	chr3_1:56676853-56676872	Msa0364000:three_prime_UTR	40.0%
	TTGAAACTAATTGTCCGGAC+AGG	+	chr3_1:56677009-56677028	None:intergenic	40.0%
	GTGACAGTCCAATGTTCATA+CGG	-	chr3_1:56677538-56677557	Msa0364000:intron	40.0%
	TGACAGTCCAATGTTCATAC+GGG	-	chr3_1:56677539-56677558	Msa0364000:intron	40.0%
!	TGTTTTCCCCGTATGAACAT+TGG	+	chr3_1:56677549-56677568	None:intergenic	40.0%
!!	CTGACGAAGGTATGATCTTT+TGG	-	chr3_1:56677669-56677688	Msa0364000:intron	40.0%
!	ACTTGTGTGCATTTTGTTGC+AGG	-	chr3_1:56677743-56677762	Msa0364000:intron	40.0%
	GTTCGCATTCTTAACTACCA+AGG	+	chr3_1:56677825-56677844	None:intergenic	40.0%
	GTAGTTAAGAATGCGAACGA+AGG	-	chr3_1:56677827-56677846	Msa0364000:intron	40.0%
	GAAGATCCTTCTTAGCACAT+AGG	+	chr3_1:56677935-56677954	None:intergenic	40.0%
!!!	TCAGTCTATTTTAGCATCGG+TGG	-	chr3_1:56678026-56678045	Msa0364000:CDS	40.0%
	AATAACCCACAAGCTGACAA+GGG	+	chr3_1:56676835-56676854	None:intergenic	40.0%
	AAATAACCCACAAGCTGACA+AGG	+	chr3_1:56676836-56676855	None:intergenic	40.0%
!	TGTCAGCTTGTGGGTTATTT+CGG	-	chr3_1:56676836-56676855	Msa0364000:three_prime_UTR	40.0%
	TTTCGGAAATGCTTTGTGTG+CGG	-	chr3_1:56676853-56676872	Msa0364000:three_prime_UTR	40.0%
	TTGAAACTAATTGTCCGGAC+AGG	+	chr3_1:56677009-56677028	None:intergenic	40.0%
	GTGACAGTCCAATGTTCATA+CGG	-	chr3_1:56677538-56677557	Msa0364000:intron	40.0%
	TGACAGTCCAATGTTCATAC+GGG	-	chr3_1:56677539-56677558	Msa0364000:intron	40.0%
!	TGTTTTCCCCGTATGAACAT+TGG	+	chr3_1:56677549-56677568	None:intergenic	40.0%
!!	CTGACGAAGGTATGATCTTT+TGG	-	chr3_1:56677669-56677688	Msa0364000:intron	40.0%
!	ACTTGTGTGCATTTTGTTGC+AGG	-	chr3_1:56677743-56677762	Msa0364000:intron	40.0%
	GTTCGCATTCTTAACTACCA+AGG	+	chr3_1:56677825-56677844	None:intergenic	40.0%
	GTAGTTAAGAATGCGAACGA+AGG	-	chr3_1:56677827-56677846	Msa0364000:intron	40.0%
	GAAGATCCTTCTTAGCACAT+AGG	+	chr3_1:56677935-56677954	None:intergenic	40.0%
!!!	TCAGTCTATTTTAGCATCGG+TGG	-	chr3_1:56678026-56678045	Msa0364000:CDS	40.0%
	TGATTCCCTTGTCAGCTTGT+GGG	-	chr3_1:56676827-56676846	Msa0364000:three_prime_UTR	45.0%
	AAGCAATCAAGTCCCCAGTA+TGG	+	chr3_1:56677032-56677051	None:intergenic	45.0%
	GACAGTCCAATGTTCATACG+GGG	-	chr3_1:56677540-56677559	Msa0364000:intron	45.0%
!	CTGCCATGAATAGTGTTGAG+TGG	-	chr3_1:56677591-56677610	Msa0364000:intron	45.0%
	AACAAGTATCAGGCTGACGA+AGG	-	chr3_1:56677656-56677675	Msa0364000:intron	45.0%
!	GGACACATGCAAAGTGCTAT+TGG	-	chr3_1:56677690-56677709	Msa0364000:intron	45.0%
	TGATTCCCTTGTCAGCTTGT+GGG	-	chr3_1:56676827-56676846	Msa0364000:three_prime_UTR	45.0%
	AAGCAATCAAGTCCCCAGTA+TGG	+	chr3_1:56677032-56677051	None:intergenic	45.0%
	GACAGTCCAATGTTCATACG+GGG	-	chr3_1:56677540-56677559	Msa0364000:intron	45.0%
!	CTGCCATGAATAGTGTTGAG+TGG	-	chr3_1:56677591-56677610	Msa0364000:intron	45.0%
	AACAAGTATCAGGCTGACGA+AGG	-	chr3_1:56677656-56677675	Msa0364000:intron	45.0%
!	GGACACATGCAAAGTGCTAT+TGG	-	chr3_1:56677690-56677709	Msa0364000:intron	45.0%
	CTGATTCCCTTGTCAGCTTG+TGG	-	chr3_1:56676826-56676845	Msa0364000:three_prime_UTR	50.0%
	TGTTTCTCAGATGGCCTGTC+CGG	-	chr3_1:56676992-56677011	Msa0364000:three_prime_UTR	50.0%
	CTATTCATGGCAGCCCTACA+AGG	+	chr3_1:56677584-56677603	None:intergenic	50.0%
	GGCGTACAAACCATTTGCCT+TGG	-	chr3_1:56677805-56677824	Msa0364000:intron	50.0%
	CTGATTCCCTTGTCAGCTTG+TGG	-	chr3_1:56676826-56676845	Msa0364000:three_prime_UTR	50.0%
	TGTTTCTCAGATGGCCTGTC+CGG	-	chr3_1:56676992-56677011	Msa0364000:three_prime_UTR	50.0%
	CTATTCATGGCAGCCCTACA+AGG	+	chr3_1:56677584-56677603	None:intergenic	50.0%
	GGCGTACAAACCATTTGCCT+TGG	-	chr3_1:56677805-56677824	Msa0364000:intron	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	56676826	56678223	56676826	ID=Msa0364000;Name=Msa0364000
chr3_1	mRNA	56676826	56678223	56676826	ID=Msa0364000-mRNA-1;Parent=Msa0364000;Name=Msa0364000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=35\|1\|1\|1\|1\|1\|4\|424\|92
chr3_1	exon	56676826	56677284	56676826	ID=Msa0364000-mRNA-1:exon:10531;Parent=Msa0364000-mRNA-1
chr3_1	exon	56677372	56677504	56677372	ID=Msa0364000-mRNA-1:exon:10530;Parent=Msa0364000-mRNA-1
chr3_1	exon	56677969	56678047	56677969	ID=Msa0364000-mRNA-1:exon:10529;Parent=Msa0364000-mRNA-1
chr3_1	exon	56678157	56678223	56678157	ID=Msa0364000-mRNA-1:exon:10528;Parent=Msa0364000-mRNA-1
chr3_1	five_prime_UTR	56678189	56678223	56678189	ID=Msa0364000-mRNA-1:five_prime_utr;Parent=Msa0364000-mRNA-1
chr3_1	CDS	56678157	56678188	56678157	ID=Msa0364000-mRNA-1:cds;Parent=Msa0364000-mRNA-1
chr3_1	CDS	56677969	56678047	56677969	ID=Msa0364000-mRNA-1:cds;Parent=Msa0364000-mRNA-1
chr3_1	CDS	56677372	56677504	56677372	ID=Msa0364000-mRNA-1:cds;Parent=Msa0364000-mRNA-1
chr3_1	CDS	56677250	56677284	56677250	ID=Msa0364000-mRNA-1:cds;Parent=Msa0364000-mRNA-1
chr3_1	three_prime_UTR	56676826	56677249	56676826	ID=Msa0364000-mRNA-1:three_prime_utr;Parent=Msa0364000-mRNA-1

Gene Sequence	>Msa0364000 ATGCTTTGTGTGCGGACCTTTACAAAGCTCGAATGGCCTGTCCGGACAATTAGTTTCAACCATACTGGGGACTTGATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCCAATGTTCATACGGGGAAAACAGTACATCATATTCCTTGTAGGGCTGCCATGAATAGTGTTGAGTGGAATCCTAAATACAATGTACTTGCATATGCTGGAGATGACAAAAACAAGTATCAGGCTGACGAAGGTGTTTTTCGAATTTTTGGTTTTGAAAATGCTTAG
Protein sequence	>Msa0364000 MLCVRTFTKLEWPVRTISFNHTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQADEGVFRIFGFENA*