AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032890 MtrunA17_Chr1g0191941 89.303 402 41 1 79 480 7 406 0.0 731
Msa0032890 MtrunA17_Chr7g0272711 54.176 467 200 6 25 480 22 485 2.90e-162 468
Msa0032890 MtrunA17_Chr2g0296331 47.122 469 231 4 28 479 16 484 1.91e-147 430
Msa0032890 MtrunA17_Chr4g0066981 47.752 467 220 4 28 479 23 480 1.49e-142 417
Msa0032890 MtrunA17_Chr1g0191951 94.872 78 4 0 1 78 1 78 3.51e-47 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032890 AT1G09020.1 49.087 493 231 4 1 480 1 486 3.65e-157 455

Find 136 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTCCAACGTGTTTA+AGG 0.148528 1_1:+60045692 Msa0032890:CDS
CCATTCCTCACTTGTTTGTT+TGG 0.213376 1_1:+60040025 Msa0032890:CDS
TGGCTCCTGTGTGGGATTCT+AGG 0.216648 1_1:+60042994 Msa0032890:CDS
GTTTAATGGTCACTTTCTTT+AGG 0.241162 1_1:+60046064 Msa0032890:three_prime_UTR
GTTCATATTTATATTAATTT+AGG 0.248545 1_1:-60039815 None:intergenic
CACTTGTTTGTTTGGCCTCA+TGG 0.250434 1_1:+60040033 Msa0032890:CDS
CACTTTCTTTAGGATGAAAT+TGG 0.252484 1_1:+60046074 Msa0032890:three_prime_UTR
ATACCAATTGTGGATGATTC+TGG 0.255262 1_1:+60045067 Msa0032890:CDS
CGTTGCAATTGGCTGTTTAT+TGG 0.259307 1_1:-60044826 None:intergenic
GTTCAATACCTTTGGGTAGA+TGG 0.263569 1_1:+60044784 Msa0032890:CDS
TTTCTATGCGGTTCTTTCAC+TGG 0.272488 1_1:+60040069 Msa0032890:CDS
ATGCTTTCAGGAAGTATCTT+TGG 0.275765 1_1:+60042974 Msa0032890:intron
AACTCAAGTTTCTTGTTGTT+TGG 0.276317 1_1:-60039577 None:intergenic
AAGCGTTTCAAGAACGATTA+TGG 0.296514 1_1:+60044732 Msa0032890:CDS
ATTGTTGGGTTAGTTTAGTT+TGG 0.300163 1_1:+60046002 Msa0032890:exon
ATGGAACGCTTTGCTAATTC+TGG 0.300906 1_1:+60045736 Msa0032890:CDS
ACCGATTGGTTCAATACCTT+TGG 0.309132 1_1:+60044776 Msa0032890:CDS
GCATTGAATTTGAGACAAAT+TGG 0.317046 1_1:+60045652 Msa0032890:CDS
GAAAAGCGCTTAACCGTATA+TGG 0.324882 1_1:-60039625 None:intergenic
TACTGCTTCTCATTTGCTTC+CGG 0.327253 1_1:+60042642 Msa0032890:CDS
TCTCATTTGCTTCCGGAGTC+TGG 0.337135 1_1:+60042649 Msa0032890:CDS
AACAAGTGAGGAATGGAAAA+AGG 0.342501 1_1:-60040018 None:intergenic
GAATGGGAGGAAAACTGTTT+TGG 0.348653 1_1:+60046024 Msa0032890:three_prime_UTR
ATTAAGAAATAAATTAATCT+TGG 0.356672 1_1:+60046141 Msa0032890:three_prime_UTR
GGCATCCCATGTAACATATA+TGG 0.360054 1_1:-60041917 None:intergenic
TGGGTTAGTTTAGTTTGGAA+TGG 0.379983 1_1:+60046007 Msa0032890:exon
CAGTAGCATGCATCCATATA+CGG 0.387731 1_1:+60039612 Msa0032890:five_prime_UTR
GAACGATTATGGTTCTTTGC+CGG 0.389922 1_1:+60044743 Msa0032890:CDS
CGCCACAGTGAACACTATTT+CGG 0.390725 1_1:+60041886 Msa0032890:CDS
GGGTTAGTTTAGTTTGGAAT+GGG 0.404174 1_1:+60046008 Msa0032890:exon
CCGATTGGTTCAATACCTTT+GGG 0.410101 1_1:+60044777 Msa0032890:CDS
GAGCAGCAGCCATTTATAAA+CGG 0.418064 1_1:+60041857 Msa0032890:CDS
AGCAGCAGCCATTTATAAAC+GGG 0.425365 1_1:+60041858 Msa0032890:CDS
CGAATTGAAGGCCGCCCGAC+TGG 0.426158 1_1:+60040525 Msa0032890:CDS
GCTGCAGGTAGAGGAGGAAA+TGG 0.428068 1_1:+60039961 Msa0032890:CDS
CCAATCGGTATTTGAAGAAC+CGG 0.430303 1_1:-60044762 None:intergenic
TTTGGCCTTAGCGTTGCAAT+TGG 0.432792 1_1:-60044837 None:intergenic
AGAATAATACAAATGAAAAC+AGG 0.438479 1_1:-60039647 None:intergenic
ATTGCATATTCTATATGAAC+AGG 0.444363 1_1:+60042810 Msa0032890:CDS
TCTAGGAAGTGCAAGTTTGT+TGG 0.444547 1_1:+60043011 Msa0032890:CDS
AATGTGGAACTGATAGTAAT+GGG 0.445752 1_1:+60044333 Msa0032890:CDS
GGTTCATCAGCTGCAGGTAG+AGG 0.446142 1_1:+60039952 Msa0032890:CDS
TGATGTGTTCAAATTATTGT+TGG 0.453571 1_1:+60045987 Msa0032890:CDS
TTCAATACCTTTGGGTAGAT+GGG 0.455387 1_1:+60044785 Msa0032890:CDS
TTCTATGCGGTTCTTTCACT+GGG 0.457978 1_1:+60040070 Msa0032890:CDS
TTACCAATGTCTCGAATTGA+AGG 0.465371 1_1:+60040513 Msa0032890:CDS
GCGGTGAACCCGTTTATAAA+TGG 0.465452 1_1:-60041866 None:intergenic
GGGTAGATGGGCGCCAAAAG+TGG 0.478271 1_1:+60044797 Msa0032890:CDS
AAGTCCTTCATCAGTAAAAG+TGG 0.478439 1_1:-60044267 None:intergenic
GAACCAGAATCATCCACAAT+TGG 0.479679 1_1:-60045070 None:intergenic
TTCAGTGCTTGAATAATGTC+CGG 0.484827 1_1:-60043047 None:intergenic
AGAGCAAACTCTGGTGTCCT+AGG 0.487042 1_1:-60042577 None:intergenic
TCACAGTGATCTTACTGCAT+TGG 0.488595 1_1:+60045194 Msa0032890:intron
GATCCCTTGCACACTCCTGC+AGG 0.489091 1_1:-60045953 None:intergenic
TAATTTGAACACATCACCTA+TGG 0.489576 1_1:-60045980 None:intergenic
GTTGTTTGCTACTTGACTCC+AGG 0.490524 1_1:+60040555 Msa0032890:CDS
GGTAGATGGGCGCCAAAAGT+GGG 0.495369 1_1:+60044798 Msa0032890:CDS
CCAAATACCGTATGAAATCC+TGG 0.498485 1_1:-60040573 None:intergenic
AGTATCTTTGGCTCCTGTGT+GGG 0.498993 1_1:+60042986 Msa0032890:CDS
CGATCCATTGCATGTGGTGA+TGG 0.505024 1_1:+60045717 Msa0032890:CDS
TATATGATGTATATTCAAGA+AGG 0.507403 1_1:+60045095 Msa0032890:CDS
ATGCATTCTTCTTCCGAGGA+CGG 0.508228 1_1:+60044583 Msa0032890:CDS
CATTATTCAAGCACTGAAAG+AGG 0.510834 1_1:+60043052 Msa0032890:CDS
GATGTGTTCAAATTATTGTT+GGG 0.510954 1_1:+60045988 Msa0032890:CDS
ATATTTATATTAATTTAGGC+AGG 0.512186 1_1:-60039811 None:intergenic
GAGAGATACTAAAATTATCC+AGG 0.512926 1_1:-60045245 None:intergenic
CAAATTGGAAAATGTCCTTA+CGG 0.513581 1_1:+60045667 Msa0032890:CDS
CCGGTTCTTCAAATACCGAT+TGG 0.514318 1_1:+60044762 Msa0032890:CDS
GCAGCACTAAGAGAAGCATT+TGG 0.515122 1_1:-60044855 None:intergenic
GTAATGGGAAAGCATATCCT+TGG 0.515149 1_1:+60044348 Msa0032890:CDS
CAATGTGGAACTGATAGTAA+TGG 0.515165 1_1:+60044332 Msa0032890:CDS
TGGTGGTGAAGTCTGCCTGC+AGG 0.517145 1_1:+60045938 Msa0032890:CDS
CGTTCCATCACCACATGCAA+TGG 0.521140 1_1:-60045721 None:intergenic
AAAGTGGATCGATGACTCTC+CGG 0.522520 1_1:-60044251 None:intergenic
TTAGTTTAGTTTGGAATGGG+AGG 0.524609 1_1:+60046011 Msa0032890:exon
TTTGCTTCCGGAGTCTGGCA+AGG 0.526888 1_1:+60042654 Msa0032890:CDS
TGATTTGAGATTGAAATGTC+AGG 0.532626 1_1:+60039931 Msa0032890:exon
AGCTGCAGATGGGATCTACT+AGG 0.536186 1_1:-60041938 None:intergenic
CTGAGGAGTTGAGCCGTCCT+CGG 0.536297 1_1:-60044596 None:intergenic
TGCTACTAGCTAGTAATCAA+AGG 0.541349 1_1:+60039884 Msa0032890:five_prime_UTR
TGTTGGAGTGCTTAGTGCAC+CGG 0.541788 1_1:+60043028 Msa0032890:CDS
CCCAAAGGTATTGAACCAAT+CGG 0.545010 1_1:-60044777 None:intergenic
AAAGGTTGAGGATCAGGTAC+TGG 0.545680 1_1:-60040000 None:intergenic
AGTTAGCTCAATACCAATTG+TGG 0.548842 1_1:+60045057 Msa0032890:CDS
ATGTCTTCTAGTCTCTCAAA+AGG 0.548979 1_1:-60044517 None:intergenic
TATTATGCATTCTTCTTCCG+AGG 0.549168 1_1:+60044579 Msa0032890:CDS
TATCAAACCTTGCCAGACTC+CGG 0.549980 1_1:-60042661 None:intergenic
TTAGGATGAAATTGGAAGGA+GGG 0.550294 1_1:+60046082 Msa0032890:three_prime_UTR
AATGTATGCTAGGATAAGCC+TGG 0.551088 1_1:+60045227 Msa0032890:CDS
AAGTATCTTTGGCTCCTGTG+TGG 0.554132 1_1:+60042985 Msa0032890:CDS
ATGTCAGGTTCATCAGCTGC+AGG 0.555266 1_1:+60039946 Msa0032890:CDS
GCAGAACCATATATGTTACA+TGG 0.555752 1_1:+60041911 Msa0032890:CDS
AACAGCCAATTGCAACGCTA+AGG 0.557100 1_1:+60044832 Msa0032890:CDS
TTCTTTAGGATGAAATTGGA+AGG 0.559424 1_1:+60046078 Msa0032890:three_prime_UTR
TCTGCCTGCAGGAGTGTGCA+AGG 0.559432 1_1:+60045949 Msa0032890:CDS
GCTATCGCTCTAATGAATCA+AGG 0.560125 1_1:+60044876 Msa0032890:CDS
CCAAACAAACAAGTGAGGAA+TGG 0.562084 1_1:-60040025 None:intergenic
TTTAGGATGAAATTGGAAGG+AGG 0.565109 1_1:+60046081 Msa0032890:three_prime_UTR
AAACAACTTGAAATCCAGTC+GGG 0.566738 1_1:-60040539 None:intergenic
GAATGCATAATAGCAACTAC+TGG 0.570220 1_1:-60044568 None:intergenic
CGGCCTTCAATTCGAGACAT+TGG 0.573549 1_1:-60040516 None:intergenic
TCATCAGCTGCAGGTAGAGG+AGG 0.573943 1_1:+60039955 Msa0032890:CDS
CTTGACTCCAGGATTTCATA+CGG 0.581995 1_1:+60040566 Msa0032890:CDS
TACAGGTGTTGGAGAAGTTG+TGG 0.586664 1_1:+60045918 Msa0032890:intron
AGAAACATACTTTAGCAGCA+TGG 0.589951 1_1:+60044291 Msa0032890:CDS
GAGACATGCAGAGCAAACTC+TGG 0.590289 1_1:-60042586 None:intergenic
GTAGATGGGCGCCAAAAGTG+GGG 0.591294 1_1:+60044799 Msa0032890:CDS
CTAGATGTGAAATGTATGCT+AGG 0.597927 1_1:+60045217 Msa0032890:CDS
CACAGTGAACACTATTTCGG+TGG 0.598731 1_1:+60041889 Msa0032890:CDS
GAAGTCATATGTAGCAGCTG+AGG 0.600897 1_1:-60044613 None:intergenic
TTGCATTGTGAACTGTGCTA+TGG 0.602161 1_1:-60039761 None:intergenic
GTGCAAGGGATCATTTCCAT+AGG 0.609204 1_1:+60045964 Msa0032890:CDS
CAGAACCATATATGTTACAT+GGG 0.619520 1_1:+60041912 Msa0032890:CDS
CATCACCACATGCAATGGAT+CGG 0.619982 1_1:-60045716 None:intergenic
TAGATGGGCGCCAAAAGTGG+GGG 0.625100 1_1:+60044800 Msa0032890:CDS
GTTGGAAGTATAAGTCCGTA+AGG 0.626388 1_1:-60045682 None:intergenic
CTGCCTGCAGGAGTGTGCAA+GGG 0.626861 1_1:+60045950 Msa0032890:CDS
CAAACAACTTGAAATCCAGT+CGG 0.630864 1_1:-60040540 None:intergenic
AAGGTCCGATCCATTGCATG+TGG 0.637910 1_1:+60045711 Msa0032890:CDS
CGAAATAGTGTTCACTGTGG+CGG 0.638369 1_1:-60041885 None:intergenic
GAGAGAAAATTACAGCAATG+TGG 0.643369 1_1:+60044317 Msa0032890:CDS
AGTGAATGAAAATGAGACGT+AGG 0.645002 1_1:-60039714 None:intergenic
CTTACATCAACAAAACTCCA+AGG 0.646824 1_1:-60044365 None:intergenic
TTTGGCGCCCATCTACCCAA+AGG 0.652925 1_1:-60044792 None:intergenic
TTTGTGTGGATGGTGTGTGG+CGG 0.661221 1_1:+60041828 Msa0032890:CDS
TATTAATGTCACTAGACACA+TGG 0.669317 1_1:+60041967 Msa0032890:CDS
GGATCGGACCTTAAACACGT+TGG 0.671025 1_1:-60045700 None:intergenic
CAACTTGAAATCCAGTCGGG+CGG 0.674400 1_1:-60040536 None:intergenic
GGTGAAACCGCGTTTCTATG+CGG 0.677368 1_1:+60040057 Msa0032890:CDS
TGAGGCCAAACAAACAAGTG+AGG 0.681158 1_1:-60040030 None:intergenic
TTGTTTGTTTGGCCTCATGG+AGG 0.688091 1_1:+60040036 Msa0032890:CDS
AGGTGTTGGAGAAGTTGTGG+TGG 0.695836 1_1:+60045921 Msa0032890:intron
CACTTCCTAGAATCCCACAC+AGG 0.698640 1_1:-60042999 None:intergenic
GAAAGAACCGCATAGAAACG+CGG 0.713783 1_1:-60040064 None:intergenic
AACGCGGTTTCACCTCCATG+AGG 0.729601 1_1:-60040048 None:intergenic
CACCGAAATAGTGTTCACTG+TGG 0.763286 1_1:-60041888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCATATTTATATTAATTT+AGG - chr1_1:60039818-60039837 None:intergenic 10.0%
!! AAGAACTAAAAAATATATAT+AGG + chr1_1:60042211-60042230 Msa0032890:intron 10.0%
!! AGAACTAAAAAATATATATA+GGG + chr1_1:60042212-60042231 Msa0032890:intron 10.0%
!!! AATTCTATTATCATTATTTT+AGG + chr1_1:60043304-60043323 Msa0032890:intron 10.0%
!! AAATATTAGAGATATTTATT+TGG + chr1_1:60043383-60043402 Msa0032890:intron 10.0%
!! AATATTAGAGATATTTATTT+GGG + chr1_1:60043384-60043403 Msa0032890:intron 10.0%
!! ATATAAATAAATATCCAAAA+TGG - chr1_1:60043487-60043506 None:intergenic 10.0%
!!! ATTTTGGATATTTATTTATA+TGG + chr1_1:60043486-60043505 Msa0032890:intron 10.0%
!!! AGATTATTTTAATATAATAC+GGG - chr1_1:60043726-60043745 None:intergenic 10.0%
!!! GAGATTATTTTAATATAATA+CGG - chr1_1:60043727-60043746 None:intergenic 10.0%
!!! TAAATTTTCTACTTAAAATT+GGG - chr1_1:60044435-60044454 None:intergenic 10.0%
!! ATACATTAAAATTAAAATAC+AGG + chr1_1:60045901-60045920 Msa0032890:intron 10.0%
!! ATTAAGAAATAAATTAATCT+TGG + chr1_1:60046141-60046160 Msa0032890:three_prime_UTR 10.0%
!! ATATTTATATTAATTTAGGC+AGG - chr1_1:60039814-60039833 None:intergenic 15.0%
!!! GATTTTAAAAATTCATATAG+AGG - chr1_1:60040599-60040618 None:intergenic 15.0%
!!! ATATGAATTTTTAAAATCTG+AGG + chr1_1:60040601-60040620 Msa0032890:intron 15.0%
!! AGATAAATGTTAATACAAAT+CGG + chr1_1:60040872-60040891 Msa0032890:intron 15.0%
!! AATGAAAGTTTATTTACAAT+AGG - chr1_1:60041498-60041517 None:intergenic 15.0%
!!! TCAATAAAAGAAGAATTTTT+AGG - chr1_1:60042367-60042386 None:intergenic 15.0%
!! TAAAATATATATTGAACACA+AGG - chr1_1:60042945-60042964 None:intergenic 15.0%
!!! CTAAATATTTTTTACCATTT+AGG + chr1_1:60043229-60043248 Msa0032890:intron 15.0%
!! ATAATGATAATAGAATTCAA+TGG - chr1_1:60043301-60043320 None:intergenic 15.0%
!!! ATAGATTTTGTAAAAACAAA+TGG + chr1_1:60043760-60043779 Msa0032890:intron 15.0%
!!! GTAAATTTTCTACTTAAAAT+TGG - chr1_1:60044436-60044455 None:intergenic 15.0%
!!! TATATTTATTTTTAATCTGC+AGG + chr1_1:60044489-60044508 Msa0032890:intron 15.0%
!! ATGTATAAATTTAATGCTAT+TGG - chr1_1:60045322-60045341 None:intergenic 15.0%
!! TTAAATTGAATATAAAGTGA+AGG + chr1_1:60045460-60045479 Msa0032890:intron 15.0%
!! GTTAAATTTCAATTAGTATA+AGG + chr1_1:60045493-60045512 Msa0032890:intron 15.0%
!! GTTAGACTAAATATATTTAT+CGG + chr1_1:60045569-60045588 Msa0032890:intron 15.0%
!! TTAGACTAAATATATTTATC+GGG + chr1_1:60045570-60045589 Msa0032890:intron 15.0%
!! AGAATAATACAAATGAAAAC+AGG - chr1_1:60039650-60039669 None:intergenic 20.0%
!! TCTAGAAAATTATTTGAGTA+TGG + chr1_1:60040219-60040238 Msa0032890:intron 20.0%
!! CAAAAAAAAAACTTACCAAA+AGG - chr1_1:60040294-60040313 None:intergenic 20.0%
!! ATTGTATAGTTTATTCAACA+TGG + chr1_1:60040362-60040381 Msa0032890:intron 20.0%
!!! TGTTTTTGTACTATAATTTC+TGG + chr1_1:60041134-60041153 Msa0032890:intron 20.0%
!! TAAATTTGAATCTACTCATT+TGG + chr1_1:60041706-60041725 Msa0032890:intron 20.0%
!! TAAAAATTGCATAATATGAG+AGG + chr1_1:60041768-60041787 Msa0032890:intron 20.0%
!! AAAAATTGCATAATATGAGA+GGG + chr1_1:60041769-60041788 Msa0032890:intron 20.0%
!! CTTAAGTGTGTTATATATAT+AGG + chr1_1:60042057-60042076 Msa0032890:intron 20.0%
!! AAAATATATATAGGGAGTTT+CGG + chr1_1:60042220-60042239 Msa0032890:intron 20.0%
!! TTAAAAAATTAATCGGTGAA+AGG + chr1_1:60042281-60042300 Msa0032890:intron 20.0%
!! TAAAAAATTAATCGGTGAAA+GGG + chr1_1:60042282-60042301 Msa0032890:intron 20.0%
!! AAACAATCATCAATTGAATA+AGG - chr1_1:60042317-60042336 None:intergenic 20.0%
!!! TATTCAATTGATGATTGTTT+TGG + chr1_1:60042317-60042336 Msa0032890:intron 20.0%
!!! TAAAAGAAGAATTTTTAGGA+GGG - chr1_1:60042363-60042382 None:intergenic 20.0%
!!! ATAAAAGAAGAATTTTTAGG+AGG - chr1_1:60042364-60042383 None:intergenic 20.0%
!! AAGAGAATATAAGAATAATC+AGG - chr1_1:60042451-60042470 None:intergenic 20.0%
!! GCATAAATTTCAATACTATA+AGG - chr1_1:60042509-60042528 None:intergenic 20.0%
!!! ATAGCAATTTATCTGATTTT+TGG + chr1_1:60042720-60042739 Msa0032890:intron 20.0%
!!! AATTTGCTTAAGATAATTTC+AGG + chr1_1:60042750-60042769 Msa0032890:intron 20.0%
!! TTAACTTAATATATGCTTTC+AGG + chr1_1:60042962-60042981 Msa0032890:intron 20.0%
!!! TAATTTCTTTTAACTTCACA+TGG - chr1_1:60043183-60043202 None:intergenic 20.0%
!! TGAAGTTAAAAGAAATTACA+AGG + chr1_1:60043185-60043204 Msa0032890:intron 20.0%
!! ATATTTAGCATAAATCAACT+TGG - chr1_1:60043217-60043236 None:intergenic 20.0%
!! ACTAATTAATTATGCCTAAA+TGG - chr1_1:60043246-60043265 None:intergenic 20.0%
!!! AATCAATCATTTTATGTAGT+AGG + chr1_1:60043332-60043351 Msa0032890:intron 20.0%
!! ATTTATTTATATGGTATGTC+TGG + chr1_1:60043495-60043514 Msa0032890:intron 20.0%
!! GTTATACTTCAATACATTAT+TGG + chr1_1:60043554-60043573 Msa0032890:intron 20.0%
!!! AATTTTTCTCATATGTGTTA+AGG - chr1_1:60044393-60044412 None:intergenic 20.0%
!!! TTTAAAATTTTTGCAATGCA+AGG + chr1_1:60044543-60044562 Msa0032890:CDS 20.0%
!! TATATGATGTATATTCAAGA+AGG + chr1_1:60045095-60045114 Msa0032890:CDS 20.0%
!!! TTTTTTTTTCTTTTTCCGTA+AGG + chr1_1:60045528-60045547 Msa0032890:intron 20.0%
!! TAAAATTAAAATACAGGTGT+TGG + chr1_1:60045907-60045926 Msa0032890:intron 20.0%
!!! CTTTGAAAAACTATGTTTAA+TGG + chr1_1:60046050-60046069 Msa0032890:three_prime_UTR 20.0%
!!! CTAGTTATCTATTTTATTTG+CGG + chr1_1:60046109-60046128 Msa0032890:three_prime_UTR 20.0%
!!! TGTTGTAGAGTTTTAGAAAA+CGG - chr1_1:60039686-60039705 None:intergenic 25.0%
!!! CTCAAATAATTTTCTAGAAC+AGG - chr1_1:60040217-60040236 None:intergenic 25.0%
!!! TTTGTTTTCTCATATTGCTT+GGG + chr1_1:60040755-60040774 Msa0032890:intron 25.0%
!!! ATTGTTTTGATGTTGTTTCA+AGG + chr1_1:60040934-60040953 Msa0032890:intron 25.0%
! ATGTAATGAAAGAGTTGAAA+AGG - chr1_1:60041081-60041100 None:intergenic 25.0%
!!! GGTTTTTTTTTAAGAAGTGT+TGG + chr1_1:60041291-60041310 Msa0032890:intron 25.0%
!! TCTAAAGAGCAATTTTCAAA+GGG + chr1_1:60041444-60041463 Msa0032890:intron 25.0%
! TCTCACAGTTATTAATGTAT+CGG + chr1_1:60041679-60041698 Msa0032890:intron 25.0%
! AAATATATGCAACAAACCAA+GGG - chr1_1:60042022-60042041 None:intergenic 25.0%
! AAAATATATGCAACAAACCA+AGG - chr1_1:60042023-60042042 None:intergenic 25.0%
!! TTTGTTGCATATATTTTGCT+TGG + chr1_1:60042026-60042045 Msa0032890:intron 25.0%
! GATTAACATTATCGTCAAAA+TGG + chr1_1:60042097-60042116 Msa0032890:intron 25.0%
!!! TGCATTTATAGTCTTGTAAT+TGG + chr1_1:60042151-60042170 Msa0032890:intron 25.0%
!! TCAGATAAATTGCTATTGAT+TGG - chr1_1:60042716-60042735 None:intergenic 25.0%
! ATTGCATATTCTATATGAAC+AGG + chr1_1:60042810-60042829 Msa0032890:CDS 25.0%
! TCATGTAAATAGTGTAATGA+GGG - chr1_1:60042849-60042868 None:intergenic 25.0%
!! AAAGAGGTTTGTAGAAATTT+TGG + chr1_1:60043068-60043087 Msa0032890:intron 25.0%
! TTGAATGAAAACTGAACAAT+TGG + chr1_1:60043100-60043119 Msa0032890:intron 25.0%
!! TAGGTTCTAGTAAAACTATT+TGG + chr1_1:60043351-60043370 Msa0032890:intron 25.0%
!! AGGTTCTAGTAAAACTATTT+GGG + chr1_1:60043352-60043371 Msa0032890:intron 25.0%
!! GATTTATAGTTCTTCCATTT+TGG + chr1_1:60043470-60043489 Msa0032890:intron 25.0%
! TTCACTTATAGTAGAAGATA+TGG + chr1_1:60043581-60043600 Msa0032890:intron 25.0%
! TTGTAGTCAAGCTATAAATA+AGG + chr1_1:60043687-60043706 Msa0032890:intron 25.0%
! TGTAGTCAAGCTATAAATAA+GGG + chr1_1:60043688-60043707 Msa0032890:intron 25.0%
! TGTAAAAACAAATGGTATAC+AGG + chr1_1:60043768-60043787 Msa0032890:intron 25.0%
!! AATTTCCCTTATGATCTTTT+TGG + chr1_1:60043856-60043875 Msa0032890:intron 25.0%
!! TTAGATAAATTAGGGACTTT+TGG - chr1_1:60043929-60043948 None:intergenic 25.0%
! AAGGTCTGTTAGATAAATTA+GGG - chr1_1:60043937-60043956 None:intergenic 25.0%
! TAAGGTCTGTTAGATAAATT+AGG - chr1_1:60043938-60043957 None:intergenic 25.0%
! AATTGGGAAATAGAAAGATA+AGG - chr1_1:60043956-60043975 None:intergenic 25.0%
! CATGCATATGTTTAAAAGTT+AGG - chr1_1:60044189-60044208 None:intergenic 25.0%
!! CTAACTTTTAAACATATGCA+TGG + chr1_1:60044187-60044206 Msa0032890:intron 25.0%
! ATGTAAGCTTTCACATTTAT+TGG + chr1_1:60044654-60044673 Msa0032890:intron 25.0%
!! AATACATTTTGCTTCTAACA+TGG - chr1_1:60044970-60044989 None:intergenic 25.0%
!! TCTACATTACTTGTTGATTA+AGG + chr1_1:60045287-60045306 Msa0032890:intron 25.0%
! CATGTTTCATTAGTTCATTA+TGG - chr1_1:60045373-60045392 None:intergenic 25.0%
! CATAATGAACTAATGAAACA+TGG + chr1_1:60045371-60045390 Msa0032890:intron 25.0%
! CTAACAATATTAGCATTGTT+AGG - chr1_1:60045554-60045573 None:intergenic 25.0%
! ATATAGCAACATTTGGATAA+AGG - chr1_1:60045783-60045802 None:intergenic 25.0%
! CTTATAGATATAGCAACATT+TGG - chr1_1:60045790-60045809 None:intergenic 25.0%
! TGATGTGTTCAAATTATTGT+TGG + chr1_1:60045987-60046006 Msa0032890:CDS 25.0%
! GATGTGTTCAAATTATTGTT+GGG + chr1_1:60045988-60046007 Msa0032890:CDS 25.0%
!! AACTCAAGTTTCTTGTTGTT+TGG - chr1_1:60039580-60039599 None:intergenic 30.0%
! TGATTTGAGATTGAAATGTC+AGG + chr1_1:60039931-60039950 Msa0032890:exon 30.0%
ATGCTATCAAAACGAATCAA+AGG - chr1_1:60040413-60040432 None:intergenic 30.0%
!! TATTTTTGTGTATGCACAGA+TGG + chr1_1:60040481-60040500 Msa0032890:intron 30.0%
GAAAAATGGTATTCTGATCA+AGG - chr1_1:60040698-60040717 None:intergenic 30.0%
!! GAATACCATTTTTCTCTCTT+TGG + chr1_1:60040704-60040723 Msa0032890:intron 30.0%
!! GTTTGTTTTCTCATATTGCT+TGG + chr1_1:60040754-60040773 Msa0032890:intron 30.0%
! TTGTTTTCTCATATTGCTTG+GGG + chr1_1:60040756-60040775 Msa0032890:intron 30.0%
TGCATGTAAAGCAATAGAAA+AGG - chr1_1:60041178-60041197 None:intergenic 30.0%
TACATGCAATGTTTGTATCT+TGG + chr1_1:60041190-60041209 Msa0032890:intron 30.0%
TTGTTGTGGTTTACAACAAA+TGG + chr1_1:60041222-60041241 Msa0032890:intron 30.0%
AGACTTCCAAAATTTCTCTA+GGG - chr1_1:60041427-60041446 None:intergenic 30.0%
TAGACTTCCAAAATTTCTCT+AGG - chr1_1:60041428-60041447 None:intergenic 30.0%
! GTCTAAAGAGCAATTTTCAA+AGG + chr1_1:60041443-60041462 Msa0032890:intron 30.0%
TTAATGATGCATTCACATTC+TGG + chr1_1:60041654-60041673 Msa0032890:intron 30.0%
GATACATTAATAACTGTGAG+AGG - chr1_1:60041680-60041699 None:intergenic 30.0%
GCACAATATCAAACATTTCA+TGG + chr1_1:60041728-60041747 Msa0032890:intron 30.0%
CAGAACCATATATGTTACAT+GGG + chr1_1:60041912-60041931 Msa0032890:CDS 30.0%
!! AATATTTTCAAGCTGCAGAT+GGG - chr1_1:60041951-60041970 None:intergenic 30.0%
!! TAATATTTTCAAGCTGCAGA+TGG - chr1_1:60041952-60041971 None:intergenic 30.0%
TATTAATGTCACTAGACACA+TGG + chr1_1:60041967-60041986 Msa0032890:CDS 30.0%
AATATATGCAACAAACCAAG+GGG - chr1_1:60042021-60042040 None:intergenic 30.0%
! TGCATATATTTTGCTTGGAA+AGG + chr1_1:60042031-60042050 Msa0032890:intron 30.0%
AAAAGAAAGTAGCTTAACCT+TGG + chr1_1:60042534-60042553 Msa0032890:intron 30.0%
TGGAAACATTGAAAAGACAA+AGG - chr1_1:60042696-60042715 None:intergenic 30.0%
!! GCAATTTATCTGATTTTTGG+TGG + chr1_1:60042723-60042742 Msa0032890:intron 30.0%
TAAATAGTGTAATGAGGGAA+GGG - chr1_1:60042844-60042863 None:intergenic 30.0%
CTCATGTAAATAGTGTAATG+AGG - chr1_1:60042850-60042869 None:intergenic 30.0%
CTCATTACACTATTTACATG+AGG + chr1_1:60042848-60042867 Msa0032890:intron 30.0%
AACTGAACAATTGGCAAAAA+TGG + chr1_1:60043109-60043128 Msa0032890:intron 30.0%
TTGGCAAAAATGGTTGAAAA+AGG + chr1_1:60043119-60043138 Msa0032890:intron 30.0%
!!! TTTTAACTTCACATGGACTT+AGG - chr1_1:60043176-60043195 None:intergenic 30.0%
! GCTAAAAGGTACATATTTCA+AGG - chr1_1:60043419-60043438 None:intergenic 30.0%
AAGCATCAATGATAGCTAAA+AGG - chr1_1:60043433-60043452 None:intergenic 30.0%
CTAAATGCTATCTAAGAATG+AGG - chr1_1:60043620-60043639 None:intergenic 30.0%
CTCATTCTTAGATAGCATTT+AGG + chr1_1:60043618-60043637 Msa0032890:intron 30.0%
GTAGTCAAGCTATAAATAAG+GGG + chr1_1:60043689-60043708 Msa0032890:intron 30.0%
AAAGAGAGGATACCAAATAA+AGG - chr1_1:60043804-60043823 None:intergenic 30.0%
! TATTTTCCTTTCCTCATTGT+AGG + chr1_1:60043823-60043842 Msa0032890:intron 30.0%
GAAAGCCAAAAAGATCATAA+GGG - chr1_1:60043864-60043883 None:intergenic 30.0%
TGAAAGCCAAAAAGATCATA+AGG - chr1_1:60043865-60043884 None:intergenic 30.0%
TATAGGACAGAAATAACTAC+TGG - chr1_1:60043889-60043908 None:intergenic 30.0%
TCCTATATTTGACATTGCAT+AGG + chr1_1:60043902-60043921 Msa0032890:intron 30.0%
TCCTATGCAATGTCAAATAT+AGG - chr1_1:60043906-60043925 None:intergenic 30.0%
AAACAAAGAGATTTAGCATC+GGG - chr1_1:60044067-60044086 None:intergenic 30.0%
GAAACAAAGAGATTTAGCAT+CGG - chr1_1:60044068-60044087 None:intergenic 30.0%
TCTCTATTAACACCAATGAT+TGG + chr1_1:60044160-60044179 Msa0032890:intron 30.0%
AAAGTTAGGAAACCAATCAT+TGG - chr1_1:60044175-60044194 None:intergenic 30.0%
AATGTGGAACTGATAGTAAT+GGG + chr1_1:60044333-60044352 Msa0032890:CDS 30.0%
!!! TTATTTTTAATCTGCAGGCT+AGG + chr1_1:60044494-60044513 Msa0032890:intron 30.0%
! TTATTGGCTATGCGTATAAA+TGG + chr1_1:60044670-60044689 Msa0032890:intron 30.0%
! AATGGTTTGGAACTAATGTA+CGG + chr1_1:60044688-60044707 Msa0032890:intron 30.0%
! AATGTACGGAGTTAATTTTC+AGG + chr1_1:60044702-60044721 Msa0032890:intron 30.0%
GTCTAAACAAAAAAGAGACT+TGG - chr1_1:60044930-60044949 None:intergenic 30.0%
GAGAGATACTAAAATTATCC+AGG - chr1_1:60045248-60045267 None:intergenic 30.0%
!! GGATAATTTTAGTATCTCTC+AGG + chr1_1:60045248-60045267 Msa0032890:CDS 30.0%
AATCAACAAGTAATGTAGAG+AGG - chr1_1:60045286-60045305 None:intergenic 30.0%
! GCATTGAATTTGAGACAAAT+TGG + chr1_1:60045652-60045671 Msa0032890:CDS 30.0%
CAAATTGGAAAATGTCCTTA+CGG + chr1_1:60045667-60045686 Msa0032890:CDS 30.0%
TTATACTTCCAACGTGTTTA+AGG + chr1_1:60045692-60045711 Msa0032890:CDS 30.0%
! ATATATTGTTGTTCTTGCTC+AGG - chr1_1:60045850-60045869 None:intergenic 30.0%
TAATTTGAACACATCACCTA+TGG - chr1_1:60045983-60046002 None:intergenic 30.0%
!! ATTGTTGGGTTAGTTTAGTT+TGG + chr1_1:60046002-60046021 Msa0032890:exon 30.0%
! GTTTAATGGTCACTTTCTTT+AGG + chr1_1:60046064-60046083 Msa0032890:three_prime_UTR 30.0%
!! CACTTTCTTTAGGATGAAAT+TGG + chr1_1:60046074-60046093 Msa0032890:three_prime_UTR 30.0%
!! TTCTTTAGGATGAAATTGGA+AGG + chr1_1:60046078-60046097 Msa0032890:three_prime_UTR 30.0%
AGTGAATGAAAATGAGACGT+AGG - chr1_1:60039717-60039736 None:intergenic 35.0%
TGCTACTAGCTAGTAATCAA+AGG + chr1_1:60039884-60039903 Msa0032890:five_prime_UTR 35.0%
AACAAGTGAGGAATGGAAAA+AGG - chr1_1:60040021-60040040 None:intergenic 35.0%
! TGAGTATGGATTATTCAGCA+TGG + chr1_1:60040233-60040252 Msa0032890:intron 35.0%
TGGATTATTCAGCATGGTAT+TGG + chr1_1:60040239-60040258 Msa0032890:intron 35.0%
TTACCAATGTCTCGAATTGA+AGG + chr1_1:60040513-60040532 Msa0032890:CDS 35.0%
AAACAACTTGAAATCCAGTC+GGG - chr1_1:60040542-60040561 None:intergenic 35.0%
CAAACAACTTGAAATCCAGT+CGG - chr1_1:60040543-60040562 None:intergenic 35.0%
GATCTCCAAAGAGAGAAAAA+TGG - chr1_1:60040712-60040731 None:intergenic 35.0%
GTGTAATGAAAGAGCTGAAA+AGG + chr1_1:60040956-60040975 Msa0032890:intron 35.0%
! GAAAAGGAAGTTGTTTCAAG+AGG + chr1_1:60040972-60040991 Msa0032890:intron 35.0%
! CTTGGTCATTTCATTTGTTG+TGG + chr1_1:60041208-60041227 Msa0032890:intron 35.0%
TGTGGTTTACAACAAATGGA+TGG + chr1_1:60041226-60041245 Msa0032890:intron 35.0%
TGAGTTGTCGTTCTGATATA+AGG + chr1_1:60041318-60041337 Msa0032890:intron 35.0%
! AACTGTTGTTGGGAGTATAA+AGG + chr1_1:60041388-60041407 Msa0032890:intron 35.0%
! TGGGAGTATAAAGGTCATTT+CGG + chr1_1:60041397-60041416 Msa0032890:intron 35.0%
GACTTCCAAAATTTCTCTAG+GGG - chr1_1:60041426-60041445 None:intergenic 35.0%
GCAGAACCATATATGTTACA+TGG + chr1_1:60041911-60041930 Msa0032890:CDS 35.0%
ATATATGCAACAAACCAAGG+GGG - chr1_1:60042020-60042039 None:intergenic 35.0%
!!! AATGGTGTGTTATTTTCTCC+AGG + chr1_1:60042115-60042134 Msa0032890:intron 35.0%
TTGAAAAGACAAAGGAGAGA+GGG - chr1_1:60042688-60042707 None:intergenic 35.0%
ATTGAAAAGACAAAGGAGAG+AGG - chr1_1:60042689-60042708 None:intergenic 35.0%
GTAAATAGTGTAATGAGGGA+AGG - chr1_1:60042845-60042864 None:intergenic 35.0%
TAACATACATTGCATGTGCA+TGG - chr1_1:60042903-60042922 None:intergenic 35.0%
!! ATGCTTTCAGGAAGTATCTT+TGG + chr1_1:60042974-60042993 Msa0032890:intron 35.0%
TTCAGTGCTTGAATAATGTC+CGG - chr1_1:60043050-60043069 None:intergenic 35.0%
!! CATTATTCAAGCACTGAAAG+AGG + chr1_1:60043052-60043071 Msa0032890:CDS 35.0%
ATCAATCAATGGAGTGATCA+AGG - chr1_1:60043668-60043687 None:intergenic 35.0%
GCTTGACTACAATCAATCAA+TGG - chr1_1:60043679-60043698 None:intergenic 35.0%
GAGGATACCAAATAAAGGAT+GGG - chr1_1:60043799-60043818 None:intergenic 35.0%
AGAGGATACCAAATAAAGGA+TGG - chr1_1:60043800-60043819 None:intergenic 35.0%
GAGGAAAGGAAAATAAAGAG+AGG - chr1_1:60043818-60043837 None:intergenic 35.0%
AGAGGCAGAACATAGAAATT+GGG - chr1_1:60043972-60043991 None:intergenic 35.0%
AAACAAACCATGGCATTTGA+AGG - chr1_1:60044011-60044030 None:intergenic 35.0%
! GGTGTTAATAGAGATTAGCT+TGG - chr1_1:60044154-60044173 None:intergenic 35.0%
CTAACATGCTTAATTTCAGC+CGG + chr1_1:60044232-60044251 Msa0032890:intron 35.0%
AAGTCCTTCATCAGTAAAAG+TGG - chr1_1:60044270-60044289 None:intergenic 35.0%
AGAAACATACTTTAGCAGCA+TGG + chr1_1:60044291-60044310 Msa0032890:CDS 35.0%
GAGAGAAAATTACAGCAATG+TGG + chr1_1:60044317-60044336 Msa0032890:CDS 35.0%
CAATGTGGAACTGATAGTAA+TGG + chr1_1:60044332-60044351 Msa0032890:CDS 35.0%
CTTACATCAACAAAACTCCA+AGG - chr1_1:60044368-60044387 None:intergenic 35.0%
ATGTCTTCTAGTCTCTCAAA+AGG - chr1_1:60044520-60044539 None:intergenic 35.0%
GAATGCATAATAGCAACTAC+TGG - chr1_1:60044571-60044590 None:intergenic 35.0%
TATTATGCATTCTTCTTCCG+AGG + chr1_1:60044579-60044598 Msa0032890:CDS 35.0%
AAGCGTTTCAAGAACGATTA+TGG + chr1_1:60044732-60044751 Msa0032890:CDS 35.0%
TTCAATACCTTTGGGTAGAT+GGG + chr1_1:60044785-60044804 Msa0032890:CDS 35.0%
AGTTAGCTCAATACCAATTG+TGG + chr1_1:60045057-60045076 Msa0032890:CDS 35.0%
ATACCAATTGTGGATGATTC+TGG + chr1_1:60045067-60045086 Msa0032890:CDS 35.0%
CTAGATGTGAAATGTATGCT+AGG + chr1_1:60045217-60045236 Msa0032890:CDS 35.0%
ATTAGCATTGTTAGGCCTTA+CGG - chr1_1:60045546-60045565 None:intergenic 35.0%
!! TGGGTTAGTTTAGTTTGGAA+TGG + chr1_1:60046007-60046026 Msa0032890:exon 35.0%
!! GGGTTAGTTTAGTTTGGAAT+GGG + chr1_1:60046008-60046027 Msa0032890:exon 35.0%
!! TTAGTTTAGTTTGGAATGGG+AGG + chr1_1:60046011-60046030 Msa0032890:exon 35.0%
! TTTAGGATGAAATTGGAAGG+AGG + chr1_1:60046081-60046100 Msa0032890:three_prime_UTR 35.0%
TTAGGATGAAATTGGAAGGA+GGG + chr1_1:60046082-60046101 Msa0032890:three_prime_UTR 35.0%
CAGTAGCATGCATCCATATA+CGG + chr1_1:60039612-60039631 Msa0032890:five_prime_UTR 40.0%
!! GAAAAGCGCTTAACCGTATA+TGG - chr1_1:60039628-60039647 None:intergenic 40.0%
TTGCATTGTGAACTGTGCTA+TGG - chr1_1:60039764-60039783 None:intergenic 40.0%
ATGGAAAAAGGTTGAGGATC+AGG - chr1_1:60040009-60040028 None:intergenic 40.0%
TGAGGAATGGAAAAAGGTTG+AGG - chr1_1:60040015-60040034 None:intergenic 40.0%
CCAAACAAACAAGTGAGGAA+TGG - chr1_1:60040028-60040047 None:intergenic 40.0%
CCATTCCTCACTTGTTTGTT+TGG + chr1_1:60040025-60040044 Msa0032890:CDS 40.0%
TTTCTATGCGGTTCTTTCAC+TGG + chr1_1:60040069-60040088 Msa0032890:CDS 40.0%
TTCTATGCGGTTCTTTCACT+GGG + chr1_1:60040070-60040089 Msa0032890:CDS 40.0%
!!! GCTGTCACTTTGTTTCCTTT+TGG + chr1_1:60040276-60040295 Msa0032890:intron 40.0%
CTTGACTCCAGGATTTCATA+CGG + chr1_1:60040566-60040585 Msa0032890:CDS 40.0%
CCAAATACCGTATGAAATCC+TGG - chr1_1:60040576-60040595 None:intergenic 40.0%
CCAGGATTTCATACGGTATT+TGG + chr1_1:60040573-60040592 Msa0032890:intron 40.0%
! TCTCTCTTTGGAGATCATAG+AGG + chr1_1:60040716-60040735 Msa0032890:intron 40.0%
! CTCTCTTTGGAGATCATAGA+GGG + chr1_1:60040717-60040736 Msa0032890:intron 40.0%
! TCTCTTTGGAGATCATAGAG+GGG + chr1_1:60040718-60040737 Msa0032890:intron 40.0%
GAAGAGGAAAGAAAGGGTAA+AGG + chr1_1:60040778-60040797 Msa0032890:intron 40.0%
! CTTGCTGTCCTGCTTTATAT+TGG + chr1_1:60041011-60041030 Msa0032890:intron 40.0%
TGTCCTGCTTTATATTGGCA+GGG + chr1_1:60041016-60041035 Msa0032890:intron 40.0%
GGTTTACAACAAATGGATGG+AGG + chr1_1:60041229-60041248 Msa0032890:intron 40.0%
TACAACAAATGGATGGAGGT+TGG + chr1_1:60041233-60041252 Msa0032890:intron 40.0%
!! TTGGACGGAGATTGGTTTAT+AGG + chr1_1:60041257-60041276 Msa0032890:intron 40.0%
!! TGGACGGAGATTGGTTTATA+GGG + chr1_1:60041258-60041277 Msa0032890:intron 40.0%
GGTTTATAGGGAGGAAAGTT+TGG + chr1_1:60041270-60041289 Msa0032890:intron 40.0%
GCAGACAGTTAACTGTTGTT+GGG + chr1_1:60041378-60041397 Msa0032890:intron 40.0%
! GGGAGTATAAAGGTCATTTC+GGG + chr1_1:60041398-60041417 Msa0032890:intron 40.0%
!! TGTGCAGTATCAGTTTTGTG+TGG + chr1_1:60041814-60041833 Msa0032890:intron 40.0%
!! CAGTATCAGTTTTGTGTGGA+TGG + chr1_1:60041818-60041837 Msa0032890:intron 40.0%
GAGCAGCAGCCATTTATAAA+CGG + chr1_1:60041857-60041876 Msa0032890:CDS 40.0%
AGCAGCAGCCATTTATAAAC+GGG + chr1_1:60041858-60041877 Msa0032890:CDS 40.0%
GGCATCCCATGTAACATATA+TGG - chr1_1:60041920-60041939 None:intergenic 40.0%
! TTAACCTTGGAGCTTTTCCA+GGG + chr1_1:60042547-60042566 Msa0032890:intron 40.0%
! TTTTCCAGGGAGTTTTTCCT+AGG + chr1_1:60042560-60042579 Msa0032890:intron 40.0%
TACTGCTTCTCATTTGCTTC+CGG + chr1_1:60042642-60042661 Msa0032890:CDS 40.0%
TGAAAAGACAAAGGAGAGAG+GGG - chr1_1:60042687-60042706 None:intergenic 40.0%
! TCTAGGAAGTGCAAGTTTGT+TGG + chr1_1:60043011-60043030 Msa0032890:CDS 40.0%
GGTTGTACCCATCCTTTATT+TGG + chr1_1:60043789-60043808 Msa0032890:intron 40.0%
CAAGAACCTACAATGAGGAA+AGG - chr1_1:60043832-60043851 None:intergenic 40.0%
TGATGCAAGAACCTACAATG+AGG - chr1_1:60043837-60043856 None:intergenic 40.0%
CAGAGGCAGAACATAGAAAT+TGG - chr1_1:60043973-60043992 None:intergenic 40.0%
TCCAGTGACAAAACAAACCA+TGG - chr1_1:60044021-60044040 None:intergenic 40.0%
!! CGATCCACTTTTACTGATGA+AGG + chr1_1:60044263-60044282 Msa0032890:CDS 40.0%
! GTAATGGGAAAGCATATCCT+TGG + chr1_1:60044348-60044367 Msa0032890:CDS 40.0%
GGCTATGCGTATAAATGGTT+TGG + chr1_1:60044675-60044694 Msa0032890:intron 40.0%
GAACGATTATGGTTCTTTGC+CGG + chr1_1:60044743-60044762 Msa0032890:CDS 40.0%
CCAATCGGTATTTGAAGAAC+CGG - chr1_1:60044765-60044784 None:intergenic 40.0%
! ACCGATTGGTTCAATACCTT+TGG + chr1_1:60044776-60044795 Msa0032890:CDS 40.0%
!! CCCAAAGGTATTGAACCAAT+CGG - chr1_1:60044780-60044799 None:intergenic 40.0%
! CCGATTGGTTCAATACCTTT+GGG + chr1_1:60044777-60044796 Msa0032890:CDS 40.0%
GTTCAATACCTTTGGGTAGA+TGG + chr1_1:60044784-60044803 Msa0032890:CDS 40.0%
! TTATTGGATTCCCCCACTTT+TGG - chr1_1:60044813-60044832 None:intergenic 40.0%
CGTTGCAATTGGCTGTTTAT+TGG - chr1_1:60044829-60044848 None:intergenic 40.0%
GCTATCGCTCTAATGAATCA+AGG + chr1_1:60044876-60044895 Msa0032890:CDS 40.0%
GAACCAGAATCATCCACAAT+TGG - chr1_1:60045073-60045092 None:intergenic 40.0%
TCACAGTGATCTTACTGCAT+TGG + chr1_1:60045194-60045213 Msa0032890:intron 40.0%
AATGTATGCTAGGATAAGCC+TGG + chr1_1:60045227-60045246 Msa0032890:CDS 40.0%
!!! ATGAAGTTTTTTTGTGCCGC+AGG + chr1_1:60045630-60045649 Msa0032890:intron 40.0%
TGTCTCAAATTCAATGCCTG+CGG - chr1_1:60045649-60045668 None:intergenic 40.0%
! GTTGGAAGTATAAGTCCGTA+AGG - chr1_1:60045685-60045704 None:intergenic 40.0%
ATGGAACGCTTTGCTAATTC+TGG + chr1_1:60045736-60045755 Msa0032890:CDS 40.0%
TGTTGTTCTTGCTCAGGTAA+AGG - chr1_1:60045844-60045863 None:intergenic 40.0%
! GAATGGGAGGAAAACTGTTT+TGG + chr1_1:60046024-60046043 Msa0032890:three_prime_UTR 40.0%
AAAGGTTGAGGATCAGGTAC+TGG - chr1_1:60040003-60040022 None:intergenic 45.0%
TGAGGCCAAACAAACAAGTG+AGG - chr1_1:60040033-60040052 None:intergenic 45.0%
CACTTGTTTGTTTGGCCTCA+TGG + chr1_1:60040033-60040052 Msa0032890:CDS 45.0%
TTGTTTGTTTGGCCTCATGG+AGG + chr1_1:60040036-60040055 Msa0032890:CDS 45.0%
GAAAGAACCGCATAGAAACG+CGG - chr1_1:60040067-60040086 None:intergenic 45.0%
! GTTGTTTGCTACTTGACTCC+AGG + chr1_1:60040555-60040574 Msa0032890:CDS 45.0%
TTTGGAGATCATAGAGGGGA+TGG + chr1_1:60040722-60040741 Msa0032890:intron 45.0%
TTGGAGATCATAGAGGGGAT+GGG + chr1_1:60040723-60040742 Msa0032890:intron 45.0%
TCTCATATTGCTTGGGGAAG+AGG + chr1_1:60040762-60040781 Msa0032890:intron 45.0%
CTTGGGGAAGAGGAAAGAAA+GGG + chr1_1:60040772-60040791 Msa0032890:intron 45.0%
CTGTCCTGCTTTATATTGGC+AGG + chr1_1:60041015-60041034 Msa0032890:intron 45.0%
CTTTATATTGGCAGGGCAGT+AGG + chr1_1:60041023-60041042 Msa0032890:intron 45.0%
! CAAATGGATGGAGGTTGGTT+TGG + chr1_1:60041238-60041257 Msa0032890:intron 45.0%
!! ACGGAGATTGGTTTATAGGG+AGG + chr1_1:60041261-60041280 Msa0032890:intron 45.0%
! CTTAAGTGCCACTAGTGTGA+CGG + chr1_1:60041356-60041375 Msa0032890:intron 45.0%
GGCAGACAGTTAACTGTTGT+TGG + chr1_1:60041377-60041396 Msa0032890:intron 45.0%
! GGGATCCCCTAGAGAAATTT+TGG + chr1_1:60041418-60041437 Msa0032890:intron 45.0%
!! AGTTTTGTGTGGATGGTGTG+TGG + chr1_1:60041825-60041844 Msa0032890:CDS 45.0%
GCGGTGAACCCGTTTATAAA+TGG - chr1_1:60041869-60041888 None:intergenic 45.0%
CGAAATAGTGTTCACTGTGG+CGG - chr1_1:60041888-60041907 None:intergenic 45.0%
CGCCACAGTGAACACTATTT+CGG + chr1_1:60041886-60041905 Msa0032890:CDS 45.0%
CACCGAAATAGTGTTCACTG+TGG - chr1_1:60041891-60041910 None:intergenic 45.0%
CACAGTGAACACTATTTCGG+TGG + chr1_1:60041889-60041908 Msa0032890:CDS 45.0%
ATGCATGCACATATGCTACC+TGG - chr1_1:60042136-60042155 None:intergenic 45.0%
! CTTAACCTTGGAGCTTTTCC+AGG + chr1_1:60042546-60042565 Msa0032890:intron 45.0%
TATCAAACCTTGCCAGACTC+CGG - chr1_1:60042664-60042683 None:intergenic 45.0%
! AAGTATCTTTGGCTCCTGTG+TGG + chr1_1:60042985-60043004 Msa0032890:CDS 45.0%
! AGTATCTTTGGCTCCTGTGT+GGG + chr1_1:60042986-60043005 Msa0032890:CDS 45.0%
GAGTGATCAAGGATCTACTC+AGG - chr1_1:60043657-60043676 None:intergenic 45.0%
TTCTGGTCCTTCAAATGCCA+TGG + chr1_1:60044001-60044020 Msa0032890:intron 45.0%
!!! GCCATGGTTTGTTTTGTCAC+TGG + chr1_1:60044017-60044036 Msa0032890:intron 45.0%
AAAGTGGATCGATGACTCTC+CGG - chr1_1:60044254-60044273 None:intergenic 45.0%
ATGCATTCTTCTTCCGAGGA+CGG + chr1_1:60044583-60044602 Msa0032890:CDS 45.0%
GAAGTCATATGTAGCAGCTG+AGG - chr1_1:60044616-60044635 None:intergenic 45.0%
CCGGTTCTTCAAATACCGAT+TGG + chr1_1:60044762-60044781 Msa0032890:CDS 45.0%
AACAGCCAATTGCAACGCTA+AGG + chr1_1:60044832-60044851 Msa0032890:CDS 45.0%
!! TTTGGCCTTAGCGTTGCAAT+TGG - chr1_1:60044840-60044859 None:intergenic 45.0%
!! GCAGCACTAAGAGAAGCATT+TGG - chr1_1:60044858-60044877 None:intergenic 45.0%
TAGCTGTTCTTAGCACAAGG+AGG - chr1_1:60045137-60045156 None:intergenic 45.0%
GTCTAGCTGTTCTTAGCACA+AGG - chr1_1:60045140-60045159 None:intergenic 45.0%
CATCACCACATGCAATGGAT+CGG - chr1_1:60045719-60045738 None:intergenic 45.0%
!! TACAGGTGTTGGAGAAGTTG+TGG + chr1_1:60045918-60045937 Msa0032890:intron 45.0%
GTGCAAGGGATCATTTCCAT+AGG + chr1_1:60045964-60045983 Msa0032890:CDS 45.0%
!!! TAACATTTTAAAAAATTAAT+CGG + chr1_1:60042274-60042293 Msa0032890:intron 5.0%
ATGTCAGGTTCATCAGCTGC+AGG + chr1_1:60039946-60039965 Msa0032890:CDS 50.0%
GGTGAAACCGCGTTTCTATG+CGG + chr1_1:60040057-60040076 Msa0032890:CDS 50.0%
CGGCCTTCAATTCGAGACAT+TGG - chr1_1:60040519-60040538 None:intergenic 50.0%
CAACTTGAAATCCAGTCGGG+CGG - chr1_1:60040539-60040558 None:intergenic 50.0%
GCTTGGGGAAGAGGAAAGAA+AGG + chr1_1:60040771-60040790 Msa0032890:intron 50.0%
CTGCCCTGCCAATATAAAGC+AGG - chr1_1:60041022-60041041 None:intergenic 50.0%
!! TGGATGGAGGTTGGTTTGGA+CGG + chr1_1:60041242-60041261 Msa0032890:intron 50.0%
!! AGGTTGGTTTGGACGGAGAT+TGG + chr1_1:60041249-60041268 Msa0032890:intron 50.0%
TTTGTGTGGATGGTGTGTGG+CGG + chr1_1:60041828-60041847 Msa0032890:CDS 50.0%
AGCTGCAGATGGGATCTACT+AGG - chr1_1:60041941-60041960 None:intergenic 50.0%
! CAAACCAAGGGGGCATAGAT+GGG - chr1_1:60042010-60042029 None:intergenic 50.0%
! ACAAACCAAGGGGGCATAGA+TGG - chr1_1:60042011-60042030 None:intergenic 50.0%
AACTCCCTGGAAAAGCTCCA+AGG - chr1_1:60042554-60042573 None:intergenic 50.0%
GTGTCCTAGGAAAAACTCCC+TGG - chr1_1:60042567-60042586 None:intergenic 50.0%
AGAGCAAACTCTGGTGTCCT+AGG - chr1_1:60042580-60042599 None:intergenic 50.0%
GAGACATGCAGAGCAAACTC+TGG - chr1_1:60042589-60042608 None:intergenic 50.0%
TCTCATTTGCTTCCGGAGTC+TGG + chr1_1:60042649-60042668 Msa0032890:CDS 50.0%
CACTTCCTAGAATCCCACAC+AGG - chr1_1:60043002-60043021 None:intergenic 50.0%
! TGTTGGAGTGCTTAGTGCAC+CGG + chr1_1:60043028-60043047 Msa0032890:CDS 50.0%
!! AGCATCGGGTGCAGGTTTTA+TGG - chr1_1:60044053-60044072 None:intergenic 50.0%
! AGAGATTTAGCATCGGGTGC+AGG - chr1_1:60044061-60044080 None:intergenic 50.0%
GGATCGGACCTTAAACACGT+TGG - chr1_1:60045703-60045722 None:intergenic 50.0%
AAGGTCCGATCCATTGCATG+TGG + chr1_1:60045711-60045730 Msa0032890:CDS 50.0%
CGATCCATTGCATGTGGTGA+TGG + chr1_1:60045717-60045736 Msa0032890:CDS 50.0%
CGTTCCATCACCACATGCAA+TGG - chr1_1:60045724-60045743 None:intergenic 50.0%
!! AGGTGTTGGAGAAGTTGTGG+TGG + chr1_1:60045921-60045940 Msa0032890:intron 50.0%
GGTTCATCAGCTGCAGGTAG+AGG + chr1_1:60039952-60039971 Msa0032890:CDS 55.0%
TCATCAGCTGCAGGTAGAGG+AGG + chr1_1:60039955-60039974 Msa0032890:CDS 55.0%
GCTGCAGGTAGAGGAGGAAA+TGG + chr1_1:60039961-60039980 Msa0032890:CDS 55.0%
AACGCGGTTTCACCTCCATG+AGG - chr1_1:60040051-60040070 None:intergenic 55.0%
ACTGTCTGCCGTCACACTAG+TGG - chr1_1:60041367-60041386 None:intergenic 55.0%
ACTTCCCATCTATGCCCCCT+TGG + chr1_1:60042003-60042022 Msa0032890:intron 55.0%
TTTGCTTCCGGAGTCTGGCA+AGG + chr1_1:60042654-60042673 Msa0032890:CDS 55.0%
TGGCTCCTGTGTGGGATTCT+AGG + chr1_1:60042994-60043013 Msa0032890:CDS 55.0%
CTGCCTCTGCTGTGTGTTTC+TGG + chr1_1:60043984-60044003 Msa0032890:intron 55.0%
GGACCAGAAACACACAGCAG+AGG - chr1_1:60043990-60044009 None:intergenic 55.0%
TTTGGCGCCCATCTACCCAA+AGG - chr1_1:60044795-60044814 None:intergenic 55.0%
GGTAGATGGGCGCCAAAAGT+GGG + chr1_1:60044798-60044817 Msa0032890:CDS 55.0%
GTAGATGGGCGCCAAAAGTG+GGG + chr1_1:60044799-60044818 Msa0032890:CDS 55.0%
TAGATGGGCGCCAAAAGTGG+GGG + chr1_1:60044800-60044819 Msa0032890:CDS 55.0%
CTGAGGAGTTGAGCCGTCCT+CGG - chr1_1:60044599-60044618 None:intergenic 60.0%
GGGTAGATGGGCGCCAAAAG+TGG + chr1_1:60044797-60044816 Msa0032890:CDS 60.0%
! TGGTGGTGAAGTCTGCCTGC+AGG + chr1_1:60045938-60045957 Msa0032890:CDS 60.0%
! TCTGCCTGCAGGAGTGTGCA+AGG + chr1_1:60045949-60045968 Msa0032890:CDS 60.0%
! CTGCCTGCAGGAGTGTGCAA+GGG + chr1_1:60045950-60045969 Msa0032890:CDS 60.0%
GATCCCTTGCACACTCCTGC+AGG - chr1_1:60045956-60045975 None:intergenic 60.0%
CGAATTGAAGGCCGCCCGAC+TGG + chr1_1:60040525-60040544 Msa0032890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60039535 60046188 60039535 ID=Msa0032890;Name=Msa0032890
chr1_1 mRNA 60039535 60046188 60039535 ID=Msa0032890-mRNA-1;Parent=Msa0032890;Name=Msa0032890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=411|1|1|1|1|1|13|174|480
chr1_1 exon 60039535 60040091 60039535 ID=Msa0032890-mRNA-1:exon:18692;Parent=Msa0032890-mRNA-1
chr1_1 exon 60040500 60040587 60040500 ID=Msa0032890-mRNA-1:exon:18693;Parent=Msa0032890-mRNA-1
chr1_1 exon 60041821 60041988 60041821 ID=Msa0032890-mRNA-1:exon:18694;Parent=Msa0032890-mRNA-1
chr1_1 exon 60042568 60042675 60042568 ID=Msa0032890-mRNA-1:exon:18695;Parent=Msa0032890-mRNA-1
chr1_1 exon 60042772 60042831 60042772 ID=Msa0032890-mRNA-1:exon:18696;Parent=Msa0032890-mRNA-1
chr1_1 exon 60042984 60043073 60042984 ID=Msa0032890-mRNA-1:exon:18697;Parent=Msa0032890-mRNA-1
chr1_1 exon 60044251 60044382 60044251 ID=Msa0032890-mRNA-1:exon:18698;Parent=Msa0032890-mRNA-1
chr1_1 exon 60044511 60044655 60044511 ID=Msa0032890-mRNA-1:exon:18699;Parent=Msa0032890-mRNA-1
chr1_1 exon 60044724 60044897 60044724 ID=Msa0032890-mRNA-1:exon:18700;Parent=Msa0032890-mRNA-1
chr1_1 exon 60045053 60045116 60045053 ID=Msa0032890-mRNA-1:exon:18701;Parent=Msa0032890-mRNA-1
chr1_1 exon 60045200 60045269 60045200 ID=Msa0032890-mRNA-1:exon:18702;Parent=Msa0032890-mRNA-1
chr1_1 exon 60045652 60045757 60045652 ID=Msa0032890-mRNA-1:exon:18703;Parent=Msa0032890-mRNA-1
chr1_1 exon 60045923 60046188 60045923 ID=Msa0032890-mRNA-1:exon:18704;Parent=Msa0032890-mRNA-1
chr1_1 five_prime_UTR 60039535 60039945 60039535 ID=Msa0032890-mRNA-1:five_prime_utr;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60039946 60040091 60039946 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60040500 60040587 60040500 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60041821 60041988 60041821 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60042568 60042675 60042568 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60042772 60042831 60042772 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60042984 60043073 60042984 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60044251 60044382 60044251 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60044511 60044655 60044511 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60044724 60044897 60044724 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60045053 60045116 60045053 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60045200 60045269 60045200 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60045652 60045757 60045652 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 CDS 60045923 60046014 60045923 ID=Msa0032890-mRNA-1:cds;Parent=Msa0032890-mRNA-1
chr1_1 three_prime_UTR 60046015 60046188 60046015 ID=Msa0032890-mRNA-1:three_prime_utr;Parent=Msa0032890-mRNA-1
Gene Sequence

>Msa0032890

ATGTCAGGTTCATCAGCTGCAGGTAGAGGAGGAAATGGAAGTAGTAGTGATGTACCAGTACCTGATCCTCAACCTTTTTCCATTCCTCACTTGTTTGTTTGGCCTCATGGAGGTGAAACCGCGTTTCTATGCGGTTCTTTCACTGGATGGTCAACAAATTTACCAATGTCTCGAATTGAAGGCCGCCCGACTGGATTTCAAGTTGTTTGCTACTTGACTCCAGGATTTCATACGTATCAGTTTTGTGTGGATGGTGTGTGGCGGCATGATGAGCAGCAGCCATTTATAAACGGGTTCACCGCCACAGTGAACACTATTTCGGTGGCAGAACCATATATGTTACATGGGATGCCTAGTAGATCCCATCTGCAGCTTGAAAATATTAATGTCACTAGACACATGGGAGTTTTTCCTAGGACACCAGAGTTTGCTCTGCATGTCTCGCGCTATCACATATATAAATTTATGTCATCGAATACTGCTTCTCATTTGCTTCCGGAGTCTGGCAAGGTATTTGTCTTGAATATAGATTTATCACTTCAGCAAGCATTGCATATTCTATATGAACAGGAAGTATCTTTGGCTCCTGTGTGGGATTCTAGGAAGTGCAAGTTTGTTGGAGTGCTTAGTGCACCGGACATTATTCAAGCACTGAAAGAGCCGGAGAGTCATCGATCCACTTTTACTGATGAAGGACTTGAGAAACATACTTTAGCAGCATGGATAGAGAGAAAATTACAGCAATGTGGAACTGATAGTAATGGGAAAGCATATCCTTGGAGTTTTGTTGATGCTAGGCCTTTTGAGAGACTAGAAGACATCGCTTTAAAATTTTTGCAATGCAAGGTGCCAGTAGTTGCTATTATGCATTCTTCTTCCGAGGACGGCTCAACTCCTCAGCTGCTACATATGACTTCTCGCTCAGAAATACTAAAATGTATATGCAAGCGTTTCAAGAACGATTATGGTTCTTTGCCGGTTCTTCAAATACCGATTGGTTCAATACCTTTGGGTAGATGGGCGCCAAAAGTGGGGGAATCCAATAAACAGCCAATTGCAACGCTAAGGCCAAATGCTTCTCTTAGTGCTGCTATCGCTCTAATGAATCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATTCTGGTTCATTATATGATGTATATTCAAGAAGTGATCTTACTGCATTGGCTAGATGTGAAATGTATGCTAGGATAAGCCTGGATAATTTTAGTATCTCTCAGGCATTGAATTTGAGACAAATTGGAAAATGTCCTTACGGACTTATACTTCCAACGTGTTTAAGGTCCGATCCATTGCATGTGGTGATGGAACGCTTTGCTAATTCTGGTGTTGGAGAAGTTGTGGTGGTGAAGTCTGCCTGCAGGAGTGTGCAAGGGATCATTTCCATAGGTGATGTGTTCAAATTATTGTTGGGTTAG

Protein sequence

>Msa0032890

MSGSSAAGRGGNGSSSDVPVPDPQPFSIPHLFVWPHGGETAFLCGSFTGWSTNLPMSRIEGRPTGFQVVCYLTPGFHTYQFCVDGVWRHDEQQPFINGFTATVNTISVAEPYMLHGMPSRSHLQLENINVTRHMGVFPRTPEFALHVSRYHIYKFMSSNTASHLLPESGKVFVLNIDLSLQQALHILYEQEVSLAPVWDSRKCKFVGVLSAPDIIQALKEPESHRSTFTDEGLEKHTLAAWIERKLQQCGTDSNGKAYPWSFVDARPFERLEDIALKFLQCKVPVVAIMHSSSEDGSTPQLLHMTSRSEILKCICKRFKNDYGSLPVLQIPIGSIPLGRWAPKVGESNKQPIATLRPNASLSAAIALMNQAEVSSIPIVDDSGSLYDVYSRSDLTALARCEMYARISLDNFSISQALNLRQIGKCPYGLILPTCLRSDPLHVVMERFANSGVGEVVVVKSACRSVQGIISIGDVFKLLLG*