AlfalfaGEDB | Msa0952950

M. sativa cultivar zhongmu-4 / Msa0952950

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01535.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0952950	XP_013452335.1	94.156	308	14	1	1	308	51	354	0.0	573

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0952950	sp\|Q8LG95\|PP332_ARATH	66.667	243	78	1	1	240	1	243	8.24e-115	336

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0952950	A0A072UBE9	94.156	308	14	1	1	308	51	354	0.0	573

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0952950	0.809431	1.898808e-50	-8.615850e-47
Msa0008850	Msa0952950	0.821288	4.373282e-53	-8.615850e-47
Msa0011720	Msa0952950	0.855568	5.782901e-62	-8.615850e-47
Msa0017120	Msa0952950	0.831683	1.452442e-55	-8.615850e-47
Msa0017940	Msa0952950	0.802611	5.167981e-49	-8.615850e-47
Msa0020630	Msa0952950	0.817695	2.886280e-52	-8.615850e-47
Msa0027540	Msa0952950	0.834410	3.045380e-56	-8.615850e-47
Msa0030000	Msa0952950	0.831906	1.280104e-55	-8.615850e-47
Msa0037820	Msa0952950	0.821029	5.016113e-53	-8.615850e-47
Msa0038350	Msa0952950	-0.816368	5.732841e-52	-8.615850e-47

Showing 1 to 10 of 407 entries

Previous1 2 3 4 5…41Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0952950	MtrunA17_Chr6g0470101	94.156	308	14	1	1	308	51	354	0.0	573
Msa0952950	MtrunA17_Chr3g0086601	45.771	201	108	1	41	241	75	274	3.35e-55	180
Msa0952950	MtrunA17_Chr5g0398991	37.349	166	101	2	58	220	71	236	3.17e-35	128

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0952950	AT4G21190.1	66.667	243	78	1	1	240	1	243	8.38e-116	336
Msa0952950	AT4G18975.2	46.701	197	104	1	42	238	58	253	1.10e-58	189
Msa0952950	AT4G18975.3	46.701	197	104	1	42	238	85	280	2.46e-58	189
Msa0952950	AT4G18975.4	46.701	197	104	1	42	238	85	280	2.46e-58	189
Msa0952950	AT4G18975.1	46.701	197	104	1	42	238	85	280	2.46e-58	189
Msa0952950	AT1G04590.1	37.912	182	112	1	40	220	131	312	3.38e-36	134
Msa0952950	AT1G04590.2	37.838	185	111	2	40	220	131	315	1.29e-34	130

Showing 1 to 7 of 7 entries

Previous1Next

Find 101 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCCACCACCGCAAT+GGG	0.433687	6_3:-48046340	Msa0952950:CDS
AAAATGCAAGCCTGCGAATC+TGG	0.343013	6_3:-48045911	Msa0952950:three_prime_UTR
AAACCCAATCCATTATTCTA+CGG	0.518266	6_3:-48050117	Msa0952950:five_prime_UTR
AAAGCTATTAATGCAGTACA+CGG	0.681216	6_3:-48047901	Msa0952950:CDS
AACAAAATGGATGCTAAGCA+AGG	0.531400	6_3:-48048012	Msa0952950:CDS
AAGGAAAGCGTGTAAGAATC+AGG	0.347993	6_3:-48046302	Msa0952950:CDS
AAGGGTCAAGGAAAGACAAT+AGG	0.447819	6_3:-48047993	Msa0952950:CDS
AAGGTATTTGCTGCTGCAAA+AGG	0.436480	6_3:-48049783	Msa0952950:CDS
AAGTAGATATGTTACTTGAT+TGG	0.432968	6_3:+48045850	None:intergenic
AATACGAGAAAGAATGGAAG+CGG	0.559112	6_3:-48048247	Msa0952950:CDS

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCAATCCATTATTCTA+CGG	-	chr6_3:48045548-48045567	Msa0952950:three_prime_UTR	30.0%
CCCAAAAAACTATAGAACTA+AGG	+	chr6_3:48045818-48045837	None:intergenic	30.0%
TAACAACAATCTATGAAGCA+TGG	-	chr6_3:48046073-48046092	Msa0952950:exon	30.0%
TCTCAAATTATTAGTGGTGT+CGG	+	chr6_3:48046145-48046164	None:intergenic	30.0%
TTGAATGTGATCACATTTGT+CGG	-	chr6_3:48046296-48046315	Msa0952950:CDS	30.0%
ATGTAAGTATTATGTCGTGT+TGG	-	chr6_3:48046460-48046479	Msa0952950:intron	30.0%
AACCTTAGTAGTTTATGCTT+TGG	-	chr6_3:48046551-48046570	Msa0952950:intron	30.0%
AACCAAAGCATAAACTACTA+AGG	+	chr6_3:48046556-48046575	None:intergenic	30.0%
GTTTCTTACTAGTTGTGATA+TGG	-	chr6_3:48046573-48046592	Msa0952950:intron	30.0%
AAAGAAGTCAATGTATCCTT+TGG	-	chr6_3:48046688-48046707	Msa0952950:intron	30.0%

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	48045545	48050142	48045545	ID=Msa0952950;Name=Msa0952950
chr6_3	mRNA	48045545	48050142	48045545	ID=Msa0952950-mRNA-1;Parent=Msa0952950;Name=Msa0952950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=176\|1\|1\|1\|1\|1\|5\|544\|308
chr6_3	exon	48045545	48046475	48045545	ID=Msa0952950-mRNA-1:exon:10632;Parent=Msa0952950-mRNA-1
chr6_3	exon	48047824	48048036	48047824	ID=Msa0952950-mRNA-1:exon:10631;Parent=Msa0952950-mRNA-1
chr6_3	exon	48048238	48048381	48048238	ID=Msa0952950-mRNA-1:exon:10630;Parent=Msa0952950-mRNA-1
chr6_3	exon	48049701	48049802	48049701	ID=Msa0952950-mRNA-1:exon:10629;Parent=Msa0952950-mRNA-1
chr6_3	exon	48049886	48050142	48049886	ID=Msa0952950-mRNA-1:exon:10628;Parent=Msa0952950-mRNA-1
chr6_3	five_prime_UTR	48049967	48050142	48049967	ID=Msa0952950-mRNA-1:five_prime_utr;Parent=Msa0952950-mRNA-1
chr6_3	CDS	48049886	48049966	48049886	ID=Msa0952950-mRNA-1:cds;Parent=Msa0952950-mRNA-1
chr6_3	CDS	48049701	48049802	48049701	ID=Msa0952950-mRNA-1:cds;Parent=Msa0952950-mRNA-1
chr6_3	CDS	48048238	48048381	48048238	ID=Msa0952950-mRNA-1:cds;Parent=Msa0952950-mRNA-1
chr6_3	CDS	48047824	48048036	48047824	ID=Msa0952950-mRNA-1:cds;Parent=Msa0952950-mRNA-1
chr6_3	CDS	48046089	48046475	48046089	ID=Msa0952950-mRNA-1:cds;Parent=Msa0952950-mRNA-1
chr6_3	three_prime_UTR	48045545	48046088	48045545	ID=Msa0952950-mRNA-1:three_prime_utr;Parent=Msa0952950-mRNA-1

Gene Sequence

>Msa0952950

ATGCTTTCACTCACTAATTCGCTTCTACTTATTGCTAAACCATACCAACAAATTAACATATCAAATAAACGAAGCATTGTGGTATTTGCTGCTGCAAAAGGTCCAAGACCCAGATATCCTCGAGTTTGGAAGACTAATAAAAAAATTGGAACTATTTCTAAGGCTGCTAAGCTTGTTCAATCTATTAAAGAACTTTCAAATGTCAAAGAAGAAGTTTATGGAGCTCTTGATACCTATGTCGCTTGGGAACTAGAATTTCCTATAATTACAGTGAAAAAGGTACTCAAGACTCTAGAATACGAGAAAGAATGGAAGCGGATAATACAGGTAACAAAATGGATGCTAAGCAAGGGTCAAGGAAAGACAATAGGAAGCTATTTTACACTACTTAATGCTTTAGCAGAGGATGACCGAGTTGACGAAGCAGAAGAGCTTTGGACAAAGCTATTAATGCAGTACACGGAAAGCTTGCCACGTAGATTCTTCGATAAAATGATATCTATCTACTGTAAAAGAGGCTTGCATGATAAGATGTTTGAGGTATTTGCAGACATGGAGGAGCTTAGTGTTAAACCTAGTAGTTCTGTTGTCTCAATGGTTGGAAATGTCTTCAAAGAGCTAGGTATGATGGATAAATACGAGAAGTTACATCAAAAATATCCACCACCGCAATGGGAATATAGATACATCAAAGGAAAGCGTGTAAGAATCAGGGTGCAAGGTCAGCCTAATAAAGTCGATAGATACGTAAGAAAGCATGACAATGTTCAACCAAATCCAGGCTTAAGAGATGAAGATAGTTCAGAAGAGACTTCAGAGTTAACGGATGATGAACAATTCGAACAGGATGCCGATTTAAAATGCATGGAAACCAAACAAATTTCAGATGATTCATCTGAGTTTATGGAACCAAATTTAGAAGTATAA

Protein sequence

>Msa0952950

MLSLTNSLLLIAKPYQQINISNKRSIVVFAAAKGPRPRYPRVWKTNKKIGTISKAAKLVQSIKELSNVKEEVYGALDTYVAWELEFPIITVKKVLKTLEYEKEWKRIIQVTKWMLSKGQGKTIGSYFTLLNALAEDDRVDEAEELWTKLLMQYTESLPRRFFDKMISIYCKRGLHDKMFEVFADMEELSVKPSSSVVSMVGNVFKELGMMDKYEKLHQKYPPPQWEYRYIKGKRVRIRVQGQPNKVDRYVRKHDNVQPNPGLRDEDSSEETSELTDDEQFEQDADLKCMETKQISDDSSEFMEPNLEV*