Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0199420 | XP_003594704.1 | 96.396 | 222 | 8 | 0 | 1 | 222 | 1 | 222 | 7.88e-152 | 431 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0199420 | A2Q675 | 96.396 | 222 | 8 | 0 | 1 | 222 | 1 | 222 | 3.77e-152 | 431 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012940 | Msa0199420 | 0.807061 | 6.074684e-50 | -8.615850e-47 |
Msa0029630 | Msa0199420 | 0.814837 | 1.256793e-51 | -8.615850e-47 |
Msa0033880 | Msa0199420 | 0.802904 | 4.496793e-49 | -8.615850e-47 |
Msa0041690 | Msa0199420 | 0.834330 | 3.190138e-56 | -8.615850e-47 |
Msa0045550 | Msa0199420 | 0.800966 | 1.124435e-48 | -8.615850e-47 |
Msa0046560 | Msa0199420 | 0.807392 | 5.168635e-50 | -8.615850e-47 |
Msa0077900 | Msa0199420 | 0.811814 | 5.799651e-51 | -8.615850e-47 |
Msa0079920 | Msa0199420 | 0.817148 | 3.832779e-52 | -8.615850e-47 |
Msa0080730 | Msa0199420 | 0.834483 | 2.920279e-56 | -8.615850e-47 |
Msa0105520 | Msa0199420 | 0.816800 | 4.588813e-52 | -8.615850e-47 |
Msa0106620 | Msa0199420 | 0.857237 | 1.871172e-62 | -8.615850e-47 |
Msa0106710 | Msa0199420 | 0.837149 | 6.161613e-57 | -8.615850e-47 |
Msa0119900 | Msa0199420 | 0.830814 | 2.376021e-55 | -8.615850e-47 |
Msa0127850 | Msa0199420 | 0.800723 | 1.260680e-48 | -8.615850e-47 |
Msa0138360 | Msa0199420 | 0.806525 | 7.884022e-50 | -8.615850e-47 |
Msa0139670 | Msa0199420 | 0.821259 | 4.440536e-53 | -8.615850e-47 |
Msa0141400 | Msa0199420 | 0.822395 | 2.423912e-53 | -8.615850e-47 |
Msa0142410 | Msa0199420 | 0.832590 | 8.667586e-56 | -8.615850e-47 |
Msa0147980 | Msa0199420 | 0.809057 | 2.284165e-50 | -8.615850e-47 |
Msa0169610 | Msa0199420 | 0.828807 | 7.321130e-55 | -8.615850e-47 |
Msa0173800 | Msa0199420 | 0.822374 | 2.451090e-53 | -8.615850e-47 |
Msa0174000 | Msa0199420 | 0.806419 | 8.303673e-50 | -8.615850e-47 |
Msa0187490 | Msa0199420 | 0.802741 | 4.859228e-49 | -8.615850e-47 |
Msa0192640 | Msa0199420 | 0.834095 | 3.652913e-56 | -8.615850e-47 |
Msa0199420 | Msa0202110 | 0.805723 | 1.163116e-49 | -8.615850e-47 |
Msa0199420 | Msa0204960 | 0.805711 | 1.169977e-49 | -8.615850e-47 |
Msa0199420 | Msa0206690 | 0.803467 | 3.437705e-49 | -8.615850e-47 |
Msa0199420 | Msa0206830 | 0.801149 | 1.032005e-48 | -8.615850e-47 |
Msa0199420 | Msa0220730 | 0.822730 | 2.026085e-53 | -8.615850e-47 |
Msa0199420 | Msa0223330 | 0.804029 | 2.628156e-49 | -8.615850e-47 |
Msa0199420 | Msa0231190 | 0.825700 | 4.063980e-54 | -8.615850e-47 |
Msa0199420 | Msa0233370 | 0.800238 | 1.582538e-48 | -8.615850e-47 |
Msa0199420 | Msa0237210 | 0.813440 | 2.557306e-51 | -8.615850e-47 |
Msa0199420 | Msa0241830 | 0.862607 | 4.494644e-64 | -8.615850e-47 |
Msa0199420 | Msa0244970 | 0.830086 | 3.579823e-55 | -8.615850e-47 |
Msa0199420 | Msa0244980 | 0.818646 | 1.758800e-52 | -8.615850e-47 |
Msa0199420 | Msa0245430 | 0.802089 | 6.618815e-49 | -8.615850e-47 |
Msa0199420 | Msa0245580 | 0.809230 | 2.097176e-50 | -8.615850e-47 |
Msa0199420 | Msa0249310 | 0.812234 | 4.698516e-51 | -8.615850e-47 |
Msa0199420 | Msa0249550 | 0.800863 | 1.180245e-48 | -8.615850e-47 |
Msa0199420 | Msa0249580 | 0.808646 | 2.795860e-50 | -8.615850e-47 |
Msa0199420 | Msa0257490 | 0.829023 | 6.492470e-55 | -8.615850e-47 |
Msa0199420 | Msa0261170 | 0.800123 | 1.670115e-48 | -8.615850e-47 |
Msa0199420 | Msa0279850 | 0.835787 | 1.369113e-56 | -8.615850e-47 |
Msa0199420 | Msa0281530 | 0.819088 | 1.395482e-52 | -8.615850e-47 |
Msa0199420 | Msa0283420 | 0.804480 | 2.116971e-49 | -8.615850e-47 |
Msa0199420 | Msa0287790 | 0.822806 | 1.945388e-53 | -8.615850e-47 |
Msa0199420 | Msa0288080 | 0.812225 | 4.719446e-51 | -8.615850e-47 |
Msa0199420 | Msa0296250 | 0.803067 | 4.161089e-49 | -8.615850e-47 |
Msa0199420 | Msa0296790 | 0.826705 | 2.342976e-54 | -8.615850e-47 |
Msa0199420 | Msa0300280 | 0.808867 | 2.507467e-50 | -8.615850e-47 |
Msa0199420 | Msa0311060 | 0.813062 | 3.094995e-51 | -8.615850e-47 |
Msa0199420 | Msa0311720 | 0.824389 | 8.288056e-54 | -8.615850e-47 |
Msa0199420 | Msa0312910 | 0.833468 | 5.243136e-56 | -8.615850e-47 |
Msa0199420 | Msa0315690 | 0.803444 | 3.476282e-49 | -8.615850e-47 |
Msa0199420 | Msa0317970 | 0.827859 | 1.239785e-54 | -8.615850e-47 |
Msa0199420 | Msa0320590 | 0.842089 | 3.198710e-58 | -8.615850e-47 |
Msa0199420 | Msa0321690 | 0.820411 | 6.957622e-53 | -8.615850e-47 |
Msa0199420 | Msa0322900 | 0.864568 | 1.107309e-64 | -8.615850e-47 |
Msa0199420 | Msa0323260 | 0.809477 | 1.855675e-50 | -8.615850e-47 |
Msa0199420 | Msa0339910 | 0.819383 | 1.195442e-52 | -8.615850e-47 |
Msa0199420 | Msa0363060 | 0.811671 | 6.231750e-51 | -8.615850e-47 |
Msa0199420 | Msa0363640 | 0.823962 | 1.044182e-53 | -8.615850e-47 |
Msa0199420 | Msa0376280 | 0.810064 | 1.387621e-50 | -8.615850e-47 |
Msa0199420 | Msa0378970 | 0.819211 | 1.308221e-52 | -8.615850e-47 |
Msa0199420 | Msa0382310 | 0.807455 | 5.011651e-50 | -8.615850e-47 |
Msa0199420 | Msa0382370 | 0.866020 | 3.868197e-65 | -8.615850e-47 |
Msa0199420 | Msa0384670 | 0.829153 | 6.037532e-55 | -8.615850e-47 |
Msa0199420 | Msa0388990 | 0.812621 | 3.866570e-51 | -8.615850e-47 |
Msa0199420 | Msa0390530 | 0.811822 | 5.776726e-51 | -8.615850e-47 |
Msa0199420 | Msa0394690 | 0.801886 | 7.287772e-49 | -8.615850e-47 |
Msa0199420 | Msa0395980 | 0.803343 | 3.648051e-49 | -8.615850e-47 |
Msa0199420 | Msa0403770 | 0.809386 | 1.941622e-50 | -8.615850e-47 |
Msa0199420 | Msa0419720 | 0.812952 | 3.272588e-51 | -8.615850e-47 |
Msa0199420 | Msa0431210 | 0.806656 | 7.400746e-50 | -8.615850e-47 |
Msa0199420 | Msa0432160 | 0.839549 | 1.482575e-57 | -8.615850e-47 |
Msa0199420 | Msa0434570 | 0.858443 | 8.210794e-63 | -8.615850e-47 |
Msa0199420 | Msa0434770 | 0.850660 | 1.471170e-60 | -8.615850e-47 |
Msa0199420 | Msa0450400 | -0.840992 | 6.223499e-58 | -8.615850e-47 |
Msa0199420 | Msa0476680 | 0.839879 | 1.216715e-57 | -8.615850e-47 |
Msa0199420 | Msa0478580 | 0.818895 | 1.543424e-52 | -8.615850e-47 |
Msa0199420 | Msa0481970 | 0.822761 | 1.992880e-53 | -8.615850e-47 |
Msa0199420 | Msa0482940 | 0.812931 | 3.306864e-51 | -8.615850e-47 |
Msa0199420 | Msa0485240 | 0.813159 | 2.947113e-51 | -8.615850e-47 |
Msa0199420 | Msa0491000 | 0.827734 | 1.328212e-54 | -8.615850e-47 |
Msa0199420 | Msa0504780 | 0.805163 | 1.524148e-49 | -8.615850e-47 |
Msa0199420 | Msa0511770 | 0.850712 | 1.422219e-60 | -8.615850e-47 |
Msa0199420 | Msa0516120 | 0.814641 | 1.389125e-51 | -8.615850e-47 |
Msa0199420 | Msa0517640 | 0.806629 | 7.497745e-50 | -8.615850e-47 |
Msa0199420 | Msa0518030 | 0.828858 | 7.115294e-55 | -8.615850e-47 |
Msa0199420 | Msa0518960 | 0.801975 | 6.987704e-49 | -8.615850e-47 |
Msa0199420 | Msa0520270 | 0.804370 | 2.231667e-49 | -8.615850e-47 |
Msa0199420 | Msa0521010 | 0.841883 | 3.627370e-58 | -8.615850e-47 |
Msa0199420 | Msa0526020 | 0.805013 | 1.638169e-49 | -8.615850e-47 |
Msa0199420 | Msa0531250 | 0.816830 | 4.518076e-52 | -8.615850e-47 |
Msa0199420 | Msa0547160 | 0.801751 | 7.766548e-49 | -8.615850e-47 |
Msa0199420 | Msa0547990 | 0.841957 | 3.466506e-58 | -8.615850e-47 |
Msa0199420 | Msa0560500 | 0.809769 | 1.606633e-50 | -8.615850e-47 |
Msa0199420 | Msa0581110 | 0.809520 | 1.817242e-50 | -8.615850e-47 |
Msa0199420 | Msa0597770 | 0.861574 | 9.327197e-64 | -8.615850e-47 |
Msa0199420 | Msa0600450 | 0.802337 | 5.885857e-49 | -8.615850e-47 |
Msa0199420 | Msa0616450 | 0.828050 | 1.115045e-54 | -8.615850e-47 |
Msa0199420 | Msa0628420 | 0.809045 | 2.297726e-50 | -8.615850e-47 |
Msa0199420 | Msa0630940 | 0.808001 | 3.838145e-50 | -8.615850e-47 |
Msa0199420 | Msa0640940 | 0.818594 | 1.806455e-52 | -8.615850e-47 |
Msa0199420 | Msa0642970 | 0.819877 | 9.220043e-53 | -8.615850e-47 |
Msa0199420 | Msa0644030 | 0.820261 | 7.532526e-53 | -8.615850e-47 |
Msa0199420 | Msa0644800 | 0.823323 | 1.473286e-53 | -8.615850e-47 |
Msa0199420 | Msa0651560 | 0.801974 | 6.991178e-49 | -8.615850e-47 |
Msa0199420 | Msa0655920 | 0.820302 | 7.368778e-53 | -8.615850e-47 |
Msa0199420 | Msa0662890 | 0.995289 | 8.250582e-215 | -8.615850e-47 |
Msa0199420 | Msa0669180 | 0.845505 | 3.894871e-59 | -8.615850e-47 |
Msa0199420 | Msa0679360 | 0.815090 | 1.104931e-51 | -8.615850e-47 |
Msa0199420 | Msa0698100 | 0.821190 | 4.605897e-53 | -8.615850e-47 |
Msa0199420 | Msa0705390 | 0.806001 | 1.016778e-49 | -8.615850e-47 |
Msa0199420 | Msa0709120 | 0.819416 | 1.174613e-52 | -8.615850e-47 |
Msa0199420 | Msa0712560 | 0.802468 | 5.531781e-49 | -8.615850e-47 |
Msa0199420 | Msa0743530 | 0.812682 | 3.749128e-51 | -8.615850e-47 |
Msa0199420 | Msa0750250 | 0.809705 | 1.658459e-50 | -8.615850e-47 |
Msa0199420 | Msa0752700 | 0.802760 | 4.814198e-49 | -8.615850e-47 |
Msa0199420 | Msa0783860 | 0.802711 | 4.928293e-49 | -8.615850e-47 |
Msa0199420 | Msa0789560 | 0.832787 | 7.745444e-56 | -8.615850e-47 |
Msa0199420 | Msa0794970 | 0.808362 | 3.215579e-50 | -8.615850e-47 |
Msa0199420 | Msa0800370 | 0.808079 | 3.693547e-50 | -8.615850e-47 |
Msa0199420 | Msa0818770 | 0.810990 | 8.756157e-51 | -8.615850e-47 |
Msa0199420 | Msa0831100 | 0.820275 | 7.477472e-53 | -8.615850e-47 |
Msa0199420 | Msa0833190 | -0.821991 | 3.007261e-53 | -8.615850e-47 |
Msa0199420 | Msa0844280 | 0.800081 | 1.703546e-48 | -8.615850e-47 |
Msa0199420 | Msa0870650 | 0.843556 | 1.303075e-58 | -8.615850e-47 |
Msa0199420 | Msa0879850 | 0.805547 | 1.266652e-49 | -8.615850e-47 |
Msa0199420 | Msa0883520 | 0.811297 | 7.514033e-51 | -8.615850e-47 |
Msa0199420 | Msa0892640 | 0.830873 | 2.297670e-55 | -8.615850e-47 |
Msa0199420 | Msa0903780 | 0.831706 | 1.434144e-55 | -8.615850e-47 |
Msa0199420 | Msa0934140 | 0.832326 | 1.007502e-55 | -8.615850e-47 |
Msa0199420 | Msa0937430 | 0.800826 | 1.201113e-48 | -8.615850e-47 |
Msa0199420 | Msa0959520 | 0.822821 | 1.929634e-53 | -8.615850e-47 |
Msa0199420 | Msa0970600 | 0.814028 | 1.897792e-51 | -8.615850e-47 |
Msa0199420 | Msa0971650 | 0.801210 | 1.002344e-48 | -8.615850e-47 |
Msa0199420 | Msa0974950 | 0.840192 | 1.007988e-57 | -8.615850e-47 |
Msa0199420 | Msa0985220 | 0.814853 | 1.247103e-51 | -8.615850e-47 |
Msa0199420 | Msa1002960 | 0.827773 | 1.299730e-54 | -8.615850e-47 |
Msa0199420 | Msa1027300 | 0.808204 | 3.473738e-50 | -8.615850e-47 |
Msa0199420 | Msa1027360 | 0.800092 | 1.695001e-48 | -8.615850e-47 |
Msa0199420 | Msa1029070 | 0.803109 | 4.078039e-49 | -8.615850e-47 |
Msa0199420 | Msa1063420 | 0.810927 | 9.036776e-51 | -8.615850e-47 |
Msa0199420 | Msa1068870 | 0.807107 | 5.941471e-50 | -8.615850e-47 |
Msa0199420 | Msa1072600 | 0.801594 | 8.365746e-49 | -8.615850e-47 |
Msa0199420 | Msa1078420 | 0.812144 | 4.913665e-51 | -8.615850e-47 |
Msa0199420 | Msa1089450 | 0.826230 | 3.039915e-54 | -8.615850e-47 |
Msa0199420 | Msa1093100 | 0.830521 | 2.803182e-55 | -8.615850e-47 |
Msa0199420 | Msa1098890 | 0.809396 | 1.932033e-50 | -8.615850e-47 |
Msa0199420 | Msa1123350 | 0.829103 | 6.208148e-55 | -8.615850e-47 |
Msa0199420 | Msa1126830 | 0.808183 | 3.510542e-50 | -8.615850e-47 |
Msa0199420 | Msa1127430 | 0.819552 | 1.093733e-52 | -8.615850e-47 |
Msa0199420 | Msa1127540 | 0.829153 | 6.035608e-55 | -8.615850e-47 |
Msa0199420 | Msa1127590 | 0.847635 | 1.020831e-59 | -8.615850e-47 |
Msa0199420 | Msa1130400 | 0.813859 | 2.068158e-51 | -8.615850e-47 |
Msa0199420 | Msa1156160 | 0.803580 | 3.257991e-49 | -8.615850e-47 |
Msa0199420 | Msa1158230 | 0.803029 | 4.236879e-49 | -8.615850e-47 |
Msa0199420 | Msa1165780 | 0.817082 | 3.965901e-52 | -8.615850e-47 |
Msa0199420 | Msa1168550 | 0.800700 | 1.274224e-48 | -8.615850e-47 |
Msa0199420 | Msa1201640 | 0.832661 | 8.321189e-56 | -8.615850e-47 |
Msa0199420 | Msa1202580 | 0.816943 | 4.261305e-52 | -8.615850e-47 |
Msa0199420 | Msa1206650 | 0.844230 | 8.598686e-59 | -8.615850e-47 |
Msa0199420 | Msa1212950 | 0.808989 | 2.361578e-50 | -8.615850e-47 |
Msa0199420 | Msa1234620 | 0.820645 | 6.148846e-53 | -8.615850e-47 |
Msa0199420 | Msa1254560 | 0.804504 | 2.092708e-49 | -8.615850e-47 |
Msa0199420 | Msa1254620 | 0.832455 | 9.363104e-56 | -8.615850e-47 |
Msa0199420 | Msa1257070 | 0.815406 | 9.395729e-52 | -8.615850e-47 |
Msa0199420 | Msa1262890 | 0.802853 | 4.606222e-49 | -8.615850e-47 |
Msa0199420 | Msa1264420 | 0.805162 | 1.525077e-49 | -8.615850e-47 |
Msa0199420 | Msa1265590 | 0.818361 | 2.040206e-52 | -8.615850e-47 |
Msa0199420 | Msa1271130 | 0.800956 | 1.129796e-48 | -8.615850e-47 |
Msa0199420 | Msa1276970 | 0.868152 | 8.074053e-66 | -8.615850e-47 |
Msa0199420 | Msa1277080 | 0.810846 | 9.408177e-51 | -8.615850e-47 |
Msa0199420 | Msa1292020 | 0.803480 | 3.417041e-49 | -8.615850e-47 |
Msa0199420 | Msa1317950 | 0.809330 | 1.995772e-50 | -8.615850e-47 |
Msa0199420 | Msa1317960 | 0.819421 | 1.171645e-52 | -8.615850e-47 |
Msa0199420 | Msa1329050 | -0.809172 | 2.157536e-50 | -8.615850e-47 |
Msa0199420 | Msa1329790 | 0.808779 | 2.619469e-50 | -8.615850e-47 |
Msa0199420 | Msa1332590 | 0.810291 | 1.240220e-50 | -8.615850e-47 |
Msa0199420 | Msa1335160 | 0.809946 | 1.471348e-50 | -8.615850e-47 |
Msa0199420 | Msa1336040 | 0.840438 | 8.694211e-58 | -8.615850e-47 |
Msa0199420 | Msa1336560 | 0.803253 | 3.807501e-49 | -8.615850e-47 |
Msa0199420 | Msa1342630 | 0.838213 | 3.285792e-57 | -8.615850e-47 |
Msa0199420 | Msa1344310 | 0.810093 | 1.367757e-50 | -8.615850e-47 |
Msa0199420 | Msa1349520 | 0.815009 | 1.151188e-51 | -8.615850e-47 |
Msa0199420 | Msa1351540 | 0.821307 | 4.329582e-53 | -8.615850e-47 |
Msa0199420 | Msa1356610 | 0.829236 | 5.762735e-55 | -8.615850e-47 |
Msa0199420 | Msa1359560 | 0.800930 | 1.143988e-48 | -8.615850e-47 |
Msa0199420 | Msa1369690 | 0.834190 | 3.459297e-56 | -8.615850e-47 |
Msa0199420 | Msa1370590 | 0.808489 | 3.020153e-50 | -8.615850e-47 |
Msa0199420 | Msa1384100 | 0.812450 | 4.213425e-51 | -8.615850e-47 |
Msa0199420 | Msa1389850 | 0.801852 | 7.404125e-49 | -8.615850e-47 |
Msa0199420 | Msa1391480 | 0.830511 | 2.818189e-55 | -8.615850e-47 |
Msa0199420 | Msa1393820 | 0.805482 | 1.306698e-49 | -8.615850e-47 |
Msa0199420 | Msa1398790 | 0.816588 | 5.119328e-52 | -8.615850e-47 |
Msa0199420 | Msa1410420 | 0.819438 | 1.161106e-52 | -8.615850e-47 |
Msa0199420 | Msa1411950 | 0.813876 | 2.050332e-51 | -8.615850e-47 |
Msa0199420 | Msa1416260 | 0.810950 | 8.934533e-51 | -8.615850e-47 |
Msa0199420 | Msa1416370 | 0.819771 | 9.749761e-53 | -8.615850e-47 |
Msa0199420 | Msa1418240 | 0.809411 | 1.917527e-50 | -8.615850e-47 |
Msa0199420 | Msa1424350 | 0.833244 | 5.962617e-56 | -8.615850e-47 |
Msa0199420 | Msa1433870 | 0.805119 | 1.556652e-49 | -8.615850e-47 |
Msa0199420 | Msa1444120 | 0.812061 | 5.123704e-51 | -8.615850e-47 |
Msa0199420 | Msa1446080 | 0.817930 | 2.554411e-52 | -8.615850e-47 |
Msa0199420 | Msa1447180 | 0.811101 | 8.283564e-51 | -8.615850e-47 |
Msa0199420 | Msa1450720 | 0.843944 | 1.026159e-58 | -8.615850e-47 |
Msa0199420 | Msa1454530 | 0.813369 | 2.649951e-51 | -8.615850e-47 |
Msa0199420 | Msa1458810 | 0.807470 | 4.976200e-50 | -8.615850e-47 |
Msa0199420 | Msa1459960 | 0.817439 | 3.295896e-52 | -8.615850e-47 |
Msa0199420 | Msa1461540 | 0.801753 | 7.758667e-49 | -8.615850e-47 |
Msa0199420 | Msa1463030 | 0.809155 | 2.176452e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0199420 | MtrunA17_Chr2g0294131 | 96.396 | 222 | 8 | 0 | 1 | 222 | 1 | 222 | 7.25e-156 | 431 |
Msa0199420 | MtrunA17_Chr4g0068671 | 52.439 | 246 | 88 | 7 | 1 | 222 | 1 | 241 | 6.53e-46 | 152 |
Msa0199420 | MtrunA17_Chr1g0194401 | 46.104 | 154 | 80 | 3 | 51 | 203 | 29 | 180 | 5.33e-36 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0199420 | AT3G17120.4 | 39.316 | 234 | 104 | 7 | 6 | 220 | 2 | 216 | 3.61e-32 | 117 |
Msa0199420 | AT3G17120.2 | 39.316 | 234 | 104 | 7 | 6 | 220 | 2 | 216 | 3.61e-32 | 117 |
Msa0199420 | AT3G17120.1 | 39.316 | 234 | 104 | 7 | 6 | 220 | 2 | 216 | 3.61e-32 | 117 |
Msa0199420 | AT3G17120.5 | 39.316 | 234 | 104 | 7 | 6 | 220 | 2 | 216 | 3.61e-32 | 117 |
Msa0199420 | AT3G17120.3 | 39.316 | 234 | 104 | 7 | 6 | 220 | 2 | 216 | 3.61e-32 | 117 |
Msa0199420 | AT1G02380.1 | 36.957 | 230 | 129 | 9 | 1 | 219 | 1 | 225 | 6.62e-31 | 114 |
Msa0199420 | AT4G01960.1 | 44.361 | 133 | 66 | 5 | 92 | 222 | 106 | 232 | 2.42e-22 | 91.7 |
Msa0199420 | AT4G01960.2 | 44.361 | 133 | 66 | 5 | 92 | 222 | 106 | 232 | 2.42e-22 | 91.7 |
Msa0199420 | AT4G01960.3 | 38.857 | 175 | 86 | 6 | 1 | 159 | 1 | 170 | 7.76e-18 | 79.0 |
Find 90 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAATTTGGATTGGATTTC+TGG | 0.086428 | 2_1:+18375633 | Msa0199420:five_prime_UTR |
ATTGGTTAATATACATAAAA+AGG | 0.151621 | 2_1:-18377319 | None:intergenic |
TATTTCAAGATTCGAAATTA+TGG | 0.194087 | 2_1:-18374306 | None:intergenic |
ATGATTTCTGGTGGATTTCT+TGG | 0.197075 | 2_1:+18375754 | Msa0199420:CDS |
ACTAACAAGGTGGGAGAATT+TGG | 0.197160 | 2_1:+18375620 | Msa0199420:five_prime_UTR |
TTATGTATATTAACCAATAT+TGG | 0.201367 | 2_1:+18377324 | Msa0199420:three_prime_UTR |
TTCCTTTCCCTTCTCTAAAA+AGG | 0.210267 | 2_1:+18374463 | Msa0199420:five_prime_UTR |
CCCTCATTGGATCAATCTTT+AGG | 0.232432 | 2_1:+18374439 | Msa0199420:five_prime_UTR |
AGGAGAATCTCTATGATTTC+TGG | 0.254863 | 2_1:+18375742 | Msa0199420:CDS |
TGGATTGGATTTCTGGTGTT+TGG | 0.257601 | 2_1:+18375640 | Msa0199420:five_prime_UTR |
TATGTATATTAACCAATATT+GGG | 0.260942 | 2_1:+18377325 | Msa0199420:three_prime_UTR |
CCTCATTGGATCAATCTTTA+GGG | 0.265612 | 2_1:+18374440 | Msa0199420:five_prime_UTR |
TGATGGTTTATGATCGATTA+AGG | 0.267940 | 2_1:+18375496 | Msa0199420:five_prime_UTR |
TTTCTTGGAGGTTCTGTTAA+TGG | 0.278154 | 2_1:+18375769 | Msa0199420:CDS |
AACAGAAGAGGGTTTGATTT+CGG | 0.331881 | 2_1:+18376832 | Msa0199420:CDS |
GGATTGGATTTCTGGTGTTT+GGG | 0.341954 | 2_1:+18375641 | Msa0199420:five_prime_UTR |
TATGATGAAAGTGGTGAATA+AGG | 0.354251 | 2_1:+18375849 | Msa0199420:CDS |
AGCAGATCATAAACTAATAA+AGG | 0.356004 | 2_1:+18375957 | Msa0199420:CDS |
GGCGCATTTGAATCACTTGA+TGG | 0.361497 | 2_1:-18376872 | None:intergenic |
TTAATGTTTCTTAATGTGAT+TGG | 0.368070 | 2_1:+18377287 | Msa0199420:three_prime_UTR |
TGTTGCAAGCAGTCATTTGA+TGG | 0.376762 | 2_1:+18375479 | Msa0199420:five_prime_UTR |
TTGTGGAGGTCGCGGAGGTT+TGG | 0.387403 | 2_1:-18375917 | None:intergenic |
GCATATTCTTCAACCCTCAT+TGG | 0.387913 | 2_1:+18374426 | Msa0199420:five_prime_UTR |
TTTGCAGGCATGTCGTCAAC+TGG | 0.390033 | 2_1:+18376761 | Msa0199420:intron |
ATATGCAGAGAGAGAGGTAA+AGG | 0.399380 | 2_1:-18374409 | None:intergenic |
TACTTGATGGACTCCGACCC+TGG | 0.400464 | 2_1:-18376893 | None:intergenic |
TTCTCACTGGCTTGCCAGAT+AGG | 0.401627 | 2_1:+18377389 | Msa0199420:three_prime_UTR |
ATGATTGAAGGTATCTGAAT+CGG | 0.402197 | 2_1:+18375443 | Msa0199420:intron |
CGAATCTTGAAATATTCATA+AGG | 0.407464 | 2_1:+18374315 | Msa0199420:five_prime_UTR |
TGCGTTGTTGTCTTGATTAA+CGG | 0.410720 | 2_1:-18374281 | None:intergenic |
ATTGAAGTTGATATTGAAAG+TGG | 0.415838 | 2_1:+18375694 | Msa0199420:CDS |
TCTGTTCCTCCTGCTGATAC+AGG | 0.426655 | 2_1:-18376815 | None:intergenic |
TGGATTTCTGGTGTTTGGGA+TGG | 0.426787 | 2_1:+18375645 | Msa0199420:exon |
CTTGAGTTATCTTCGATAAG+TGG | 0.433854 | 2_1:-18375721 | None:intergenic |
AGATTTGATTGAGAAAAGAT+AGG | 0.439239 | 2_1:-18374257 | None:intergenic |
ACCTCCACAAGGCCCGTCCT+TGG | 0.439286 | 2_1:+18375930 | Msa0199420:CDS |
ATTTCTGGTGGATTTCTTGG+AGG | 0.445274 | 2_1:+18375757 | Msa0199420:CDS |
TATGCAGAGAGAGAGGTAAA+GGG | 0.446830 | 2_1:-18374408 | None:intergenic |
GAGGTAAAGGGAAAAGAAGA+AGG | 0.455217 | 2_1:-18374396 | None:intergenic |
GATTCATTCAAATAAGAACT+TGG | 0.458751 | 2_1:-18375802 | None:intergenic |
GACGGGCCTTGTGGAGGTCG+CGG | 0.460222 | 2_1:-18375925 | None:intergenic |
TGATTGAAGGTATCTGAATC+GGG | 0.461073 | 2_1:+18375444 | Msa0199420:intron |
ATTGAGAAAAGATAGGAAAG+AGG | 0.469936 | 2_1:-18374250 | None:intergenic |
TTTGGGATGGATCAAAGAAA+TGG | 0.470867 | 2_1:+18375658 | Msa0199420:exon |
TGAAGAATATGCAGAGAGAG+AGG | 0.475557 | 2_1:-18374415 | None:intergenic |
TGATCTGCTGCGTCCAAGGA+CGG | 0.481315 | 2_1:-18375943 | None:intergenic |
TCAAGTGATTCAAATGCGCC+AGG | 0.485179 | 2_1:+18376875 | Msa0199420:CDS |
CAAGGTGGGAGAATTTGGAT+TGG | 0.503439 | 2_1:+18375625 | Msa0199420:five_prime_UTR |
GCGTCCAAGGACGGGCCTTG+TGG | 0.508349 | 2_1:-18375934 | None:intergenic |
GATCTGCTGCGTCCAAGGAC+GGG | 0.514090 | 2_1:-18375942 | None:intergenic |
TTTATGATCTGCTGCGTCCA+AGG | 0.515942 | 2_1:-18375947 | None:intergenic |
ATTCAAATAAGAACTTGGCC+TGG | 0.519471 | 2_1:-18375797 | None:intergenic |
GAGTTTAAGATTTGTTCAAA+AGG | 0.522254 | 2_1:-18374343 | None:intergenic |
CAAGGATCTCCTGTATCAGC+AGG | 0.526670 | 2_1:+18376806 | Msa0199420:CDS |
ATGTATATTAACCAATATTG+GGG | 0.531280 | 2_1:+18377326 | Msa0199420:three_prime_UTR |
CAAGAGTGGTAATTCTGCTA+TGG | 0.535692 | 2_1:-18377363 | None:intergenic |
AGCTCAGTGTCAAGTTTCCA+AGG | 0.545861 | 2_1:+18376788 | Msa0199420:CDS |
TCCAAGGACGGGCCTTGTGG+AGG | 0.547784 | 2_1:-18375931 | None:intergenic |
AGGTAAAGGGAAAAGAAGAA+GGG | 0.553678 | 2_1:-18374395 | None:intergenic |
AAGATAGGAAAGAGGTGTGA+CGG | 0.553834 | 2_1:-18374242 | None:intergenic |
TGTATCTATGACATTACAGT+TGG | 0.557830 | 2_1:-18374214 | None:intergenic |
AGAATCTCTATGATTTCTGG+TGG | 0.557872 | 2_1:+18375745 | Msa0199420:CDS |
TTGTGTATTAAAATATGAGA+TGG | 0.561705 | 2_1:+18377209 | Msa0199420:three_prime_UTR |
TTAGTACATCGTATTAATTG+AGG | 0.561939 | 2_1:+18375521 | Msa0199420:five_prime_UTR |
GTTCTGTTAATGGCGAAGCC+AGG | 0.564549 | 2_1:+18375779 | Msa0199420:CDS |
CCCTAAAGATTGATCCAATG+AGG | 0.566363 | 2_1:-18374440 | None:intergenic |
TTGTAGAGTACTAACAAGGT+GGG | 0.568297 | 2_1:+18375611 | Msa0199420:five_prime_UTR |
CTGCTGATACAGGAGATCCT+TGG | 0.569492 | 2_1:-18376805 | None:intergenic |
TTGCGATGTTGAAGCGTGCA+AGG | 0.575727 | 2_1:+18375992 | Msa0199420:CDS |
TTCTGTGAATATGATGAAAG+TGG | 0.576188 | 2_1:+18375840 | Msa0199420:CDS |
GTACATCGTATTAATTGAGG+AGG | 0.592449 | 2_1:+18375524 | Msa0199420:five_prime_UTR |
TTCATTGTGATAATCTGCCA+AGG | 0.593747 | 2_1:+18376117 | Msa0199420:CDS |
GGATGGATCAAAGAAATGGA+AGG | 0.596860 | 2_1:+18375662 | Msa0199420:exon |
TGATTCAAATGCGCCAGGGT+CGG | 0.597497 | 2_1:+18376880 | Msa0199420:CDS |
TCAGCAGGAGGAACAGAAGA+GGG | 0.604684 | 2_1:+18376821 | Msa0199420:CDS |
ATCAGCAGGAGGAACAGAAG+AGG | 0.608715 | 2_1:+18376820 | Msa0199420:CDS |
ATCTAATAGCAGCAGCATTG+TGG | 0.611367 | 2_1:+18376071 | Msa0199420:CDS |
GGGCCTTGTGGAGGTCGCGG+AGG | 0.611484 | 2_1:-18375922 | None:intergenic |
AAACCTCCGCGACCTCCACA+AGG | 0.611809 | 2_1:+18375919 | Msa0199420:CDS |
AATCACTTGATGGATTGAGT+TGG | 0.614440 | 2_1:-18376862 | None:intergenic |
CCTAAAGATTGATCCAATGA+GGG | 0.615614 | 2_1:-18374439 | None:intergenic |
CACTTATCGAAGATAACTCA+AGG | 0.618096 | 2_1:+18375722 | Msa0199420:CDS |
TGTATATTAACCAATATTGG+GGG | 0.618643 | 2_1:+18377327 | Msa0199420:three_prime_UTR |
CATGGTCGTTGACATTGAGA+TGG | 0.619878 | 2_1:+18377451 | Msa0199420:three_prime_UTR |
ATGCTGCTGCTATTAGATGA+CGG | 0.623369 | 2_1:-18376066 | None:intergenic |
GATGGATCAAAGAAATGGAA+GGG | 0.642676 | 2_1:+18375663 | Msa0199420:exon |
TTTGTAGAGTACTAACAAGG+TGG | 0.646867 | 2_1:+18375610 | Msa0199420:five_prime_UTR |
GTATATTAACCAATATTGGG+GGG | 0.649906 | 2_1:+18377328 | Msa0199420:three_prime_UTR |
CAAGTGATTCAAATGCGCCA+GGG | 0.667412 | 2_1:+18376876 | Msa0199420:CDS |
GGATCTCCTGTATCAGCAGG+AGG | 0.672344 | 2_1:+18376809 | Msa0199420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATTATTTGTTTTTTC+TGG | + | chr2_1:18374948-18374967 | Msa0199420:intron | 10.0% |
!!! | TTTTATTATTTGTTTTTTCT+GGG | + | chr2_1:18374949-18374968 | Msa0199420:intron | 10.0% |
!! | AACAAATTACTAAAAAAAAA+TGG | - | chr2_1:18375309-18375328 | None:intergenic | 10.0% |
!!! | ATTAATTTTTTTTCTTTCTG+TGG | + | chr2_1:18374752-18374771 | Msa0199420:intron | 15.0% |
!!! | TTCTTATGATTTTAGATTTA+AGG | + | chr2_1:18374793-18374812 | Msa0199420:intron | 15.0% |
!! | TTGGTTAATATACATAAAAA+GGG | - | chr2_1:18377321-18377340 | None:intergenic | 15.0% |
!! | ATTGGTTAATATACATAAAA+AGG | - | chr2_1:18377322-18377341 | None:intergenic | 15.0% |
!! | TTATGTATATTAACCAATAT+TGG | + | chr2_1:18377324-18377343 | Msa0199420:three_prime_UTR | 15.0% |
!! | TATGTATATTAACCAATATT+GGG | + | chr2_1:18377325-18377344 | Msa0199420:three_prime_UTR | 15.0% |
!! | TATTTCAAGATTCGAAATTA+TGG | - | chr2_1:18374309-18374328 | None:intergenic | 20.0% |
!!! | TTTGTCTTTTTTCATTTTCA+TGG | + | chr2_1:18374511-18374530 | Msa0199420:intron | 20.0% |
!!! | ATTAATTTTTTTCCTTCTTC+TGG | + | chr2_1:18374577-18374596 | Msa0199420:intron | 20.0% |
!!! | TTAATTTTTTTCCTTCTTCT+GGG | + | chr2_1:18374578-18374597 | Msa0199420:intron | 20.0% |
!!! | TTGTCTTTTTTCATTTTCAT+GGG | + | chr2_1:18374512-18374531 | Msa0199420:intron | 20.0% |
!!! | TTTTGTCACTATTTGAAAAT+TGG | + | chr2_1:18375129-18375148 | Msa0199420:intron | 20.0% |
!! | TTTGTCACTATTTGAAAATT+GGG | + | chr2_1:18375130-18375149 | Msa0199420:intron | 20.0% |
!!! | ATGATAATTTTCCCTTTAAT+GGG | - | chr2_1:18375224-18375243 | None:intergenic | 20.0% |
!!! | TATGATAATTTTCCCTTTAA+TGG | - | chr2_1:18375225-18375244 | None:intergenic | 20.0% |
!!! | ATTTGTTTTTAGAGAACTAA+TGG | + | chr2_1:18375322-18375341 | Msa0199420:intron | 20.0% |
!! | ATTACTATCAAATTTCATCA+TGG | + | chr2_1:18376443-18376462 | Msa0199420:intron | 20.0% |
!!! | AATTTTTTGTATGTTTGGAA+TGG | - | chr2_1:18376690-18376709 | None:intergenic | 20.0% |
!! | TTCCAAACATACAAAAAATT+TGG | + | chr2_1:18376690-18376709 | Msa0199420:intron | 20.0% |
!!! | AACCAAATTTTTTGTATGTT+TGG | - | chr2_1:18376695-18376714 | None:intergenic | 20.0% |
!! | AAACATACAAAAAATTTGGT+TGG | + | chr2_1:18376694-18376713 | Msa0199420:intron | 20.0% |
!! | CAACCATTAGATTAATTAAA+TGG | - | chr2_1:18377004-18377023 | None:intergenic | 20.0% |
!!! | ATATTTTAATACACAAGTGA+TGG | - | chr2_1:18377205-18377224 | None:intergenic | 20.0% |
!! | TTGTGTATTAAAATATGAGA+TGG | + | chr2_1:18377209-18377228 | Msa0199420:three_prime_UTR | 20.0% |
!! | TTAATGTTTCTTAATGTGAT+TGG | + | chr2_1:18377287-18377306 | Msa0199420:three_prime_UTR | 20.0% |
!! | ATGTATATTAACCAATATTG+GGG | + | chr2_1:18377326-18377345 | Msa0199420:three_prime_UTR | 20.0% |
! | AGATTTGATTGAGAAAAGAT+AGG | - | chr2_1:18374260-18374279 | None:intergenic | 25.0% |
! | CGAATCTTGAAATATTCATA+AGG | + | chr2_1:18374315-18374334 | Msa0199420:five_prime_UTR | 25.0% |
!! | GAGTTTAAGATTTGTTCAAA+AGG | - | chr2_1:18374346-18374365 | None:intergenic | 25.0% |
!!! | GTAATTACCTTTTTAGAGAA+GGG | - | chr2_1:18374473-18374492 | None:intergenic | 25.0% |
!!! | AGTAATTACCTTTTTAGAGA+AGG | - | chr2_1:18374474-18374493 | None:intergenic | 25.0% |
!!! | TAATTTTTTTCCTTCTTCTG+GGG | + | chr2_1:18374579-18374598 | Msa0199420:intron | 25.0% |
!!! | GTTGTCTTTTTTCATTTTCA+TGG | + | chr2_1:18374881-18374900 | Msa0199420:intron | 25.0% |
! | TTGTCACTATTTGAAAATTG+GGG | + | chr2_1:18375131-18375150 | Msa0199420:intron | 25.0% |
! | AAGCTTAAAGTTATGTCATT+TGG | + | chr2_1:18375163-18375182 | Msa0199420:intron | 25.0% |
! | CAAAGATAAAACCCATTAAA+GGG | + | chr2_1:18375210-18375229 | Msa0199420:intron | 25.0% |
! | AAATGGTATAATCCTTTGAA+AGG | - | chr2_1:18375292-18375311 | None:intergenic | 25.0% |
!!! | TAGTAAATAGAGTTTTAGAG+AGG | + | chr2_1:18375351-18375370 | Msa0199420:intron | 25.0% |
! | TTAGTACATCGTATTAATTG+AGG | + | chr2_1:18375521-18375540 | Msa0199420:five_prime_UTR | 25.0% |
!!! | AGGAGGTTTTTTTATATGAT+GGG | + | chr2_1:18375541-18375560 | Msa0199420:five_prime_UTR | 25.0% |
!!! | ATTGAAGTTGATATTGAAAG+TGG | + | chr2_1:18375694-18375713 | Msa0199420:CDS | 25.0% |
! | GATTCATTCAAATAAGAACT+TGG | - | chr2_1:18375805-18375824 | None:intergenic | 25.0% |
! | AGCAGATCATAAACTAATAA+AGG | + | chr2_1:18375957-18375976 | Msa0199420:CDS | 25.0% |
!! | AATTTTATATGGCCTAATAG+AGG | - | chr2_1:18376289-18376308 | None:intergenic | 25.0% |
! | TCGCCATTTAATTAATCTAA+TGG | + | chr2_1:18376998-18377017 | Msa0199420:intron | 25.0% |
! | TGTATATTAACCAATATTGG+GGG | + | chr2_1:18377327-18377346 | Msa0199420:three_prime_UTR | 25.0% |
!!! | CTTTTGAAGCTAAAAAACAA+TGG | + | chr2_1:18377482-18377501 | Msa0199420:three_prime_UTR | 25.0% |
TGTATCTATGACATTACAGT+TGG | - | chr2_1:18374217-18374236 | None:intergenic | 30.0% | |
ATTGAGAAAAGATAGGAAAG+AGG | - | chr2_1:18374253-18374272 | None:intergenic | 30.0% | |
AACCCTCAAATGATGATAAT+GGG | - | chr2_1:18374540-18374559 | None:intergenic | 30.0% | |
TAACCCTCAAATGATGATAA+TGG | - | chr2_1:18374541-18374560 | None:intergenic | 30.0% | |
! | TTGCCTTTTTCCATTTTCAT+GGG | + | chr2_1:18374673-18374692 | Msa0199420:intron | 30.0% |
ATACCCCAAATGAAGATAAT+GGG | - | chr2_1:18374701-18374720 | None:intergenic | 30.0% | |
AATACCCCAAATGAAGATAA+TGG | - | chr2_1:18374702-18374721 | None:intergenic | 30.0% | |
! | TATTTGAAAATTGGGGCTTT+TGG | + | chr2_1:18375138-18375157 | Msa0199420:intron | 30.0% |
! | ATTTGAAAATTGGGGCTTTT+GGG | + | chr2_1:18375139-18375158 | Msa0199420:intron | 30.0% |
!!! | TTAATGGGTTTTATCTTTGG+AGG | - | chr2_1:18375209-18375228 | None:intergenic | 30.0% |
!!! | CCTTTAATGGGTTTTATCTT+TGG | - | chr2_1:18375212-18375231 | None:intergenic | 30.0% |
CCAAAGATAAAACCCATTAA+AGG | + | chr2_1:18375209-18375228 | Msa0199420:intron | 30.0% | |
!!! | TGTTTTTAGAGAACTAATGG+AGG | + | chr2_1:18375325-18375344 | Msa0199420:intron | 30.0% |
!! | ATGATTGAAGGTATCTGAAT+CGG | + | chr2_1:18375443-18375462 | Msa0199420:intron | 30.0% |
TGATGGTTTATGATCGATTA+AGG | + | chr2_1:18375496-18375515 | Msa0199420:five_prime_UTR | 30.0% | |
!!! | GAGGAGGTTTTTTTATATGA+TGG | + | chr2_1:18375540-18375559 | Msa0199420:five_prime_UTR | 30.0% |
!! | GTTTTTGTAGAGTACTAACA+AGG | + | chr2_1:18375607-18375626 | Msa0199420:five_prime_UTR | 30.0% |
TTCTGTGAATATGATGAAAG+TGG | + | chr2_1:18375840-18375859 | Msa0199420:CDS | 30.0% | |
TATGATGAAAGTGGTGAATA+AGG | + | chr2_1:18375849-18375868 | Msa0199420:CDS | 30.0% | |
!! | TTTTTCCGTTTTTCTTTTGC+TGG | - | chr2_1:18375877-18375896 | None:intergenic | 30.0% |
AGCAAAAGAAAAACGGAAAA+AGG | + | chr2_1:18375876-18375895 | Msa0199420:CDS | 30.0% | |
! | TTGTACCACAAATTTTACCT+TGG | - | chr2_1:18376137-18376156 | None:intergenic | 30.0% |
GAAACAGATTAGATATGCAA+TGG | - | chr2_1:18376267-18376286 | None:intergenic | 30.0% | |
TCTAATCTGTTTCCTCTATT+AGG | + | chr2_1:18376274-18376293 | Msa0199420:intron | 30.0% | |
AGAAATGCCAAAGAAACAAT+TGG | - | chr2_1:18376474-18376493 | None:intergenic | 30.0% | |
!!! | AGTTTTGTTGCATTCATGAT+TGG | + | chr2_1:18376505-18376524 | Msa0199420:intron | 30.0% |
!!! | GTTTGTTTTTGTGCAATGTT+TGG | + | chr2_1:18376551-18376570 | Msa0199420:intron | 30.0% |
!! | TTTTTGTATGTTTGGAATGG+CGG | - | chr2_1:18376687-18376706 | None:intergenic | 30.0% |
! | TAATTAGAAGTTCCTTTTGC+AGG | + | chr2_1:18376746-18376765 | Msa0199420:intron | 30.0% |
! | TGTGTTTTCAACTTACTTGA+TGG | - | chr2_1:18376909-18376928 | None:intergenic | 30.0% |
GATCAATATCACAACACTAA+GGG | - | chr2_1:18376951-18376970 | None:intergenic | 30.0% | |
GTATATTAACCAATATTGGG+GGG | + | chr2_1:18377328-18377347 | Msa0199420:three_prime_UTR | 30.0% | |
TGAGAAGGTAAAAAGTAACA+GGG | - | chr2_1:18377415-18377434 | None:intergenic | 30.0% | |
TGCGTTGTTGTCTTGATTAA+CGG | - | chr2_1:18374284-18374303 | None:intergenic | 35.0% | |
AGGTAAAGGGAAAAGAAGAA+GGG | - | chr2_1:18374398-18374417 | None:intergenic | 35.0% | |
CCTAAAGATTGATCCAATGA+GGG | - | chr2_1:18374442-18374461 | None:intergenic | 35.0% | |
CCTCATTGGATCAATCTTTA+GGG | + | chr2_1:18374440-18374459 | Msa0199420:five_prime_UTR | 35.0% | |
! | TTCCTTTCCCTTCTCTAAAA+AGG | + | chr2_1:18374463-18374482 | Msa0199420:five_prime_UTR | 35.0% |
!! | TACCTTTTTAGAGAAGGGAA+AGG | - | chr2_1:18374468-18374487 | None:intergenic | 35.0% |
TTGCCCATTATCATCATTTG+AGG | + | chr2_1:18374534-18374553 | Msa0199420:intron | 35.0% | |
TGCCCATTATCATCATTTGA+GGG | + | chr2_1:18374535-18374554 | Msa0199420:intron | 35.0% | |
TATCATCATTTGAGGGTTAG+AGG | + | chr2_1:18374542-18374561 | Msa0199420:intron | 35.0% | |
AATTATTCAACCCCAGAAGA+AGG | - | chr2_1:18374592-18374611 | None:intergenic | 35.0% | |
! | GTTGCCTTTTTCCATTTTCA+TGG | + | chr2_1:18374672-18374691 | Msa0199420:intron | 35.0% |
!! | ATTTGGGGTATTGACTTTGA+GGG | + | chr2_1:18374710-18374729 | Msa0199420:intron | 35.0% |
!! | TACCCCCAAATTTTGATGAT+GGG | - | chr2_1:18374910-18374929 | None:intergenic | 35.0% |
!! | ATACCCCCAAATTTTGATGA+TGG | - | chr2_1:18374911-18374930 | None:intergenic | 35.0% |
!! | AATTTGGGGGTATTGACTTT+AGG | + | chr2_1:18374918-18374937 | Msa0199420:intron | 35.0% |
!! | ATTTGGGGGTATTGACTTTA+GGG | + | chr2_1:18374919-18374938 | Msa0199420:intron | 35.0% |
CAAAGCAATGCAGACATAAA+TGG | - | chr2_1:18375044-18375063 | None:intergenic | 35.0% | |
TCTTTGTTCCTTTCTTCTCA+AGG | + | chr2_1:18375089-18375108 | Msa0199420:intron | 35.0% | |
CAAAAAGTCCTTGAGAAGAA+AGG | - | chr2_1:18375100-18375119 | None:intergenic | 35.0% | |
!! | TGATTGAAGGTATCTGAATC+GGG | + | chr2_1:18375444-18375463 | Msa0199420:intron | 35.0% |
GTACATCGTATTAATTGAGG+AGG | + | chr2_1:18375524-18375543 | Msa0199420:five_prime_UTR | 35.0% | |
! | TTTGTAGAGTACTAACAAGG+TGG | + | chr2_1:18375610-18375629 | Msa0199420:five_prime_UTR | 35.0% |
! | TTGTAGAGTACTAACAAGGT+GGG | + | chr2_1:18375611-18375630 | Msa0199420:five_prime_UTR | 35.0% |
! | GAGAATTTGGATTGGATTTC+TGG | + | chr2_1:18375633-18375652 | Msa0199420:five_prime_UTR | 35.0% |
! | TTTGGGATGGATCAAAGAAA+TGG | + | chr2_1:18375658-18375677 | Msa0199420:exon | 35.0% |
GATGGATCAAAGAAATGGAA+GGG | + | chr2_1:18375663-18375682 | Msa0199420:exon | 35.0% | |
CTTGAGTTATCTTCGATAAG+TGG | - | chr2_1:18375724-18375743 | None:intergenic | 35.0% | |
CACTTATCGAAGATAACTCA+AGG | + | chr2_1:18375722-18375741 | Msa0199420:CDS | 35.0% | |
AGGAGAATCTCTATGATTTC+TGG | + | chr2_1:18375742-18375761 | Msa0199420:CDS | 35.0% | |
! | AGAATCTCTATGATTTCTGG+TGG | + | chr2_1:18375745-18375764 | Msa0199420:CDS | 35.0% |
!! | ATGATTTCTGGTGGATTTCT+TGG | + | chr2_1:18375754-18375773 | Msa0199420:CDS | 35.0% |
TTTCTTGGAGGTTCTGTTAA+TGG | + | chr2_1:18375769-18375788 | Msa0199420:CDS | 35.0% | |
ATTCAAATAAGAACTTGGCC+TGG | - | chr2_1:18375800-18375819 | None:intergenic | 35.0% | |
TTCATTGTGATAATCTGCCA+AGG | + | chr2_1:18376117-18376136 | Msa0199420:CDS | 35.0% | |
ATCTGCCAAGGTAAAATTTG+TGG | + | chr2_1:18376129-18376148 | Msa0199420:intron | 35.0% | |
TATGCAATGGTCACAAAACA+AGG | - | chr2_1:18376254-18376273 | None:intergenic | 35.0% | |
! | GGTTTGTCCAATTGTTTCTT+TGG | + | chr2_1:18376464-18376483 | Msa0199420:intron | 35.0% |
GTTTCTTTGGCATTTCTTTC+TGG | + | chr2_1:18376477-18376496 | Msa0199420:intron | 35.0% | |
CAAAAACAAACAATACCGCA+GGG | - | chr2_1:18376542-18376561 | None:intergenic | 35.0% | |
ACAAAAACAAACAATACCGC+AGG | - | chr2_1:18376543-18376562 | None:intergenic | 35.0% | |
TTGTGCAATGTTTGGATTGA+CGG | + | chr2_1:18376559-18376578 | Msa0199420:intron | 35.0% | |
!! | CGGAGATTTTAGAGATATCA+CGG | + | chr2_1:18376579-18376598 | Msa0199420:intron | 35.0% |
!! | AGATTTTAGAGATATCACGG+TGG | + | chr2_1:18376582-18376601 | Msa0199420:intron | 35.0% |
TTCCATCATAAGCTACACTT+TGG | - | chr2_1:18376629-18376648 | None:intergenic | 35.0% | |
! | AACAGAAGAGGGTTTGATTT+CGG | + | chr2_1:18376832-18376851 | Msa0199420:CDS | 35.0% |
!! | AATCACTTGATGGATTGAGT+TGG | - | chr2_1:18376865-18376884 | None:intergenic | 35.0% |
GGATCAATATCACAACACTA+AGG | - | chr2_1:18376952-18376971 | None:intergenic | 35.0% | |
TAATGGTTGAAATTTCGCGA+GGG | + | chr2_1:18377015-18377034 | Msa0199420:intron | 35.0% | |
! | ATGTGAAATTTTCCGCTTGA+TGG | + | chr2_1:18377082-18377101 | Msa0199420:intron | 35.0% |
CTGAGAAGGTAAAAAGTAAC+AGG | - | chr2_1:18377416-18377435 | None:intergenic | 35.0% | |
! | AAGATAGGAAAGAGGTGTGA+CGG | - | chr2_1:18374245-18374264 | None:intergenic | 40.0% |
GAGGTAAAGGGAAAAGAAGA+AGG | - | chr2_1:18374399-18374418 | None:intergenic | 40.0% | |
TATGCAGAGAGAGAGGTAAA+GGG | - | chr2_1:18374411-18374430 | None:intergenic | 40.0% | |
ATATGCAGAGAGAGAGGTAA+AGG | - | chr2_1:18374412-18374431 | None:intergenic | 40.0% | |
TGAAGAATATGCAGAGAGAG+AGG | - | chr2_1:18374418-18374437 | None:intergenic | 40.0% | |
GCATATTCTTCAACCCTCAT+TGG | + | chr2_1:18374426-18374445 | Msa0199420:five_prime_UTR | 40.0% | |
CCCTCATTGGATCAATCTTT+AGG | + | chr2_1:18374439-18374458 | Msa0199420:five_prime_UTR | 40.0% | |
CCCTAAAGATTGATCCAATG+AGG | - | chr2_1:18374443-18374462 | None:intergenic | 40.0% | |
GCACCCATGAAAATGGAAAA+AGG | - | chr2_1:18374679-18374698 | None:intergenic | 40.0% | |
!! | ATAATGGGCACCCATGAAAA+TGG | - | chr2_1:18374686-18374705 | None:intergenic | 40.0% |
GGTGCCCATTATCTTCATTT+GGG | + | chr2_1:18374694-18374713 | Msa0199420:intron | 40.0% | |
GTGCCCATTATCTTCATTTG+GGG | + | chr2_1:18374695-18374714 | Msa0199420:intron | 40.0% | |
!! | CATTTGGGGTATTGACTTTG+AGG | + | chr2_1:18374709-18374728 | Msa0199420:intron | 40.0% |
!! | GTATTGACTTTGAGGGTTAG+AGG | + | chr2_1:18374717-18374736 | Msa0199420:intron | 40.0% |
GGTGCCCATCATCAAAATTT+GGG | + | chr2_1:18374903-18374922 | Msa0199420:intron | 40.0% | |
GTGCCCATCATCAAAATTTG+GGG | + | chr2_1:18374904-18374923 | Msa0199420:intron | 40.0% | |
TGCCCATCATCAAAATTTGG+GGG | + | chr2_1:18374905-18374924 | Msa0199420:intron | 40.0% | |
!!! | TTCGTCACTTTTTGTGATGC+AGG | + | chr2_1:18375260-18375279 | Msa0199420:intron | 40.0% |
TGCAGGTTTAGTCCTTTCAA+AGG | + | chr2_1:18375277-18375296 | Msa0199420:intron | 40.0% | |
! | GAGAGGAAGAGAAGTAGTTT+TGG | + | chr2_1:18375368-18375387 | Msa0199420:intron | 40.0% |
!!! | AGGAAGAGAAGTAGTTTTGG+AGG | + | chr2_1:18375371-18375390 | Msa0199420:intron | 40.0% |
CGTGGATGGTTTATGATTGA+AGG | + | chr2_1:18375431-18375450 | Msa0199420:intron | 40.0% | |
TGTTGCAAGCAGTCATTTGA+TGG | + | chr2_1:18375479-18375498 | Msa0199420:five_prime_UTR | 40.0% | |
ACTAACAAGGTGGGAGAATT+TGG | + | chr2_1:18375620-18375639 | Msa0199420:five_prime_UTR | 40.0% | |
!! | TGGATTGGATTTCTGGTGTT+TGG | + | chr2_1:18375640-18375659 | Msa0199420:five_prime_UTR | 40.0% |
!! | GGATTGGATTTCTGGTGTTT+GGG | + | chr2_1:18375641-18375660 | Msa0199420:five_prime_UTR | 40.0% |
GGATGGATCAAAGAAATGGA+AGG | + | chr2_1:18375662-18375681 | Msa0199420:exon | 40.0% | |
!! | ATTTCTGGTGGATTTCTTGG+AGG | + | chr2_1:18375757-18375776 | Msa0199420:CDS | 40.0% |
AGGCTCCAGCAAAAGAAAAA+CGG | + | chr2_1:18375869-18375888 | Msa0199420:CDS | 40.0% | |
! | AGAAAAACGGAAAAAGGCGT+CGG | + | chr2_1:18375882-18375901 | Msa0199420:CDS | 40.0% |
ATGCTGCTGCTATTAGATGA+CGG | - | chr2_1:18376069-18376088 | None:intergenic | 40.0% | |
ATCTAATAGCAGCAGCATTG+TGG | + | chr2_1:18376071-18376090 | Msa0199420:CDS | 40.0% | |
AGTGAGTACACGAGAAATCA+TGG | + | chr2_1:18376350-18376369 | Msa0199420:intron | 40.0% | |
GTGAGTACACGAGAAATCAT+GGG | + | chr2_1:18376351-18376370 | Msa0199420:intron | 40.0% | |
TACACGAGAAATCATGGGTT+TGG | + | chr2_1:18376356-18376375 | Msa0199420:intron | 40.0% | |
! | GAGAAATCATGGGTTTGGTT+TGG | + | chr2_1:18376361-18376380 | Msa0199420:intron | 40.0% |
TTGGATTAAACTACTCCCTG+CGG | + | chr2_1:18376524-18376543 | Msa0199420:intron | 40.0% | |
CTCCAAAGTGTAGCTTATGA+TGG | + | chr2_1:18376624-18376643 | Msa0199420:intron | 40.0% | |
! | AGCTTATGATGGAATCACGA+TGG | + | chr2_1:18376635-18376654 | Msa0199420:intron | 40.0% |
! | TATCTCGTAGTGGGATTCAA+AGG | - | chr2_1:18376973-18376992 | None:intergenic | 40.0% |
CTAATGGTTGAAATTTCGCG+AGG | + | chr2_1:18377014-18377033 | Msa0199420:intron | 40.0% | |
AATGGTTGAAATTTCGCGAG+GGG | + | chr2_1:18377016-18377035 | Msa0199420:intron | 40.0% | |
ACAAAACTGCAACCATCAAG+CGG | - | chr2_1:18377097-18377116 | None:intergenic | 40.0% | |
!! | ATGGTTGCAGTTTTGTACAG+CGG | + | chr2_1:18377101-18377120 | Msa0199420:intron | 40.0% |
CAGATTCGCAAGAAAAACTG+AGG | + | chr2_1:18377134-18377153 | Msa0199420:CDS | 40.0% | |
TTTAACTCACCCCCCAATAT+TGG | - | chr2_1:18377340-18377359 | None:intergenic | 40.0% | |
CAAGAGTGGTAATTCTGCTA+TGG | - | chr2_1:18377366-18377385 | None:intergenic | 40.0% | |
!!! | ACCACTCTTGTTTTTCTCAC+TGG | + | chr2_1:18377376-18377395 | Msa0199420:three_prime_UTR | 40.0% |
AAAAAGTAACAGGGCCTATC+TGG | - | chr2_1:18377406-18377425 | None:intergenic | 40.0% | |
GCAACAAAAAGTTGCTGAGA+AGG | - | chr2_1:18377430-18377449 | None:intergenic | 40.0% | |
! | CAGCAACTTTTTGTTGCTCA+TGG | + | chr2_1:18377433-18377452 | Msa0199420:three_prime_UTR | 40.0% |
GGGTGCCCATTATCTTCATT+TGG | + | chr2_1:18374693-18374712 | Msa0199420:intron | 45.0% | |
GGGTGCCCATCATCAAAATT+TGG | + | chr2_1:18374902-18374921 | Msa0199420:intron | 45.0% | |
CTGTCTGTATCTGTCTAACG+TGG | + | chr2_1:18375413-18375432 | Msa0199420:intron | 45.0% | |
CTGTATCTGTCTAACGTGGA+TGG | + | chr2_1:18375417-18375436 | Msa0199420:intron | 45.0% | |
CAAGGTGGGAGAATTTGGAT+TGG | + | chr2_1:18375625-18375644 | Msa0199420:five_prime_UTR | 45.0% | |
!! | TGGATTTCTGGTGTTTGGGA+TGG | + | chr2_1:18375645-18375664 | Msa0199420:exon | 45.0% |
!! | GAAAAACGGAAAAAGGCGTC+GGG | + | chr2_1:18375883-18375902 | Msa0199420:CDS | 45.0% |
!! | GAAAAAGGCGTCGGGTAAAA+AGG | + | chr2_1:18375891-18375910 | Msa0199420:CDS | 45.0% |
TTTATGATCTGCTGCGTCCA+AGG | - | chr2_1:18375950-18375969 | None:intergenic | 45.0% | |
AGCTCAGTGTCAAGTTTCCA+AGG | + | chr2_1:18376788-18376807 | Msa0199420:CDS | 45.0% | |
GGCGCATTTGAATCACTTGA+TGG | - | chr2_1:18376875-18376894 | None:intergenic | 45.0% | |
TCAAGTGATTCAAATGCGCC+AGG | + | chr2_1:18376875-18376894 | Msa0199420:CDS | 45.0% | |
CAAGTGATTCAAATGCGCCA+GGG | + | chr2_1:18376876-18376895 | Msa0199420:CDS | 45.0% | |
! | GCGAAGTGTTATCTCGTAGT+GGG | - | chr2_1:18376982-18377001 | None:intergenic | 45.0% |
AATTTCGCGAGGGGATAAAG+AGG | + | chr2_1:18377025-18377044 | Msa0199420:intron | 45.0% | |
!! | TGGTTGCAGTTTTGTACAGC+GGG | + | chr2_1:18377102-18377121 | Msa0199420:intron | 45.0% |
TCGCAAGAAAAACTGAGGAC+AGG | + | chr2_1:18377139-18377158 | Msa0199420:CDS | 45.0% | |
GAAAAACTGAGGACAGGTTG+AGG | + | chr2_1:18377145-18377164 | Msa0199420:CDS | 45.0% | |
GCCAGTGAGAAAAACAAGAG+TGG | - | chr2_1:18377380-18377399 | None:intergenic | 45.0% | |
CATGGTCGTTGACATTGAGA+TGG | + | chr2_1:18377451-18377470 | Msa0199420:three_prime_UTR | 45.0% | |
!!! | ATAAATATGAAAATTTTATA+TGG | - | chr2_1:18376300-18376319 | None:intergenic | 5.0% |
GTTCTGTTAATGGCGAAGCC+AGG | + | chr2_1:18375779-18375798 | Msa0199420:CDS | 50.0% | |
TTGCGATGTTGAAGCGTGCA+AGG | + | chr2_1:18375992-18376011 | Msa0199420:CDS | 50.0% | |
! | GTTTGGAATGGCGGTGAGTT+TGG | - | chr2_1:18376678-18376697 | None:intergenic | 50.0% |
GTTGACGACATGCCTGCAAA+AGG | - | chr2_1:18376761-18376780 | None:intergenic | 50.0% | |
TTTGCAGGCATGTCGTCAAC+TGG | + | chr2_1:18376761-18376780 | Msa0199420:intron | 50.0% | |
CTGCTGATACAGGAGATCCT+TGG | - | chr2_1:18376808-18376827 | None:intergenic | 50.0% | |
CAAGGATCTCCTGTATCAGC+AGG | + | chr2_1:18376806-18376825 | Msa0199420:CDS | 50.0% | |
TCTGTTCCTCCTGCTGATAC+AGG | - | chr2_1:18376818-18376837 | None:intergenic | 50.0% | |
ATCAGCAGGAGGAACAGAAG+AGG | + | chr2_1:18376820-18376839 | Msa0199420:CDS | 50.0% | |
TCAGCAGGAGGAACAGAAGA+GGG | + | chr2_1:18376821-18376840 | Msa0199420:CDS | 50.0% | |
TGATTCAAATGCGCCAGGGT+CGG | + | chr2_1:18376880-18376899 | Msa0199420:CDS | 50.0% | |
! | GGCGAAGTGTTATCTCGTAG+TGG | - | chr2_1:18376983-18377002 | None:intergenic | 50.0% |
!! | AGTTTTGTACAGCGGGTGTC+AGG | + | chr2_1:18377109-18377128 | Msa0199420:intron | 50.0% |
!! | TTCTCACTGGCTTGCCAGAT+AGG | + | chr2_1:18377389-18377408 | Msa0199420:three_prime_UTR | 50.0% |
TGATCTGCTGCGTCCAAGGA+CGG | - | chr2_1:18375946-18375965 | None:intergenic | 55.0% | |
GGATCTCCTGTATCAGCAGG+AGG | + | chr2_1:18376809-18376828 | Msa0199420:CDS | 55.0% | |
!! | TACTTGATGGACTCCGACCC+TGG | - | chr2_1:18376896-18376915 | None:intergenic | 55.0% |
TTGTGGAGGTCGCGGAGGTT+TGG | - | chr2_1:18375920-18375939 | None:intergenic | 60.0% | |
AAACCTCCGCGACCTCCACA+AGG | + | chr2_1:18375919-18375938 | Msa0199420:CDS | 60.0% | |
GATCTGCTGCGTCCAAGGAC+GGG | - | chr2_1:18375945-18375964 | None:intergenic | 60.0% | |
ACCTCCACAAGGCCCGTCCT+TGG | + | chr2_1:18375930-18375949 | Msa0199420:CDS | 65.0% | |
! | TCCAAGGACGGGCCTTGTGG+AGG | - | chr2_1:18375934-18375953 | None:intergenic | 65.0% |
! | GACGGGCCTTGTGGAGGTCG+CGG | - | chr2_1:18375928-18375947 | None:intergenic | 70.0% |
GCGTCCAAGGACGGGCCTTG+TGG | - | chr2_1:18375937-18375956 | None:intergenic | 70.0% | |
! | GGGCCTTGTGGAGGTCGCGG+AGG | - | chr2_1:18375925-18375944 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 18374202 | 18377530 | 18374202 | ID=Msa0199420;Name=Msa0199420 |
chr2_1 | mRNA | 18374202 | 18377530 | 18374202 | ID=Msa0199420-mRNA-1;Parent=Msa0199420;Name=Msa0199420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=494|1|1|1|0.66|0.5|4|365|224 |
chr2_1 | exon | 18374202 | 18374484 | 18374202 | ID=Msa0199420-mRNA-1:exon:7742;Parent=Msa0199420-mRNA-1 |
chr2_1 | exon | 18375453 | 18376138 | 18375453 | ID=Msa0199420-mRNA-1:exon:7743;Parent=Msa0199420-mRNA-1 |
chr2_1 | exon | 18376768 | 18376912 | 18376768 | ID=Msa0199420-mRNA-1:exon:7744;Parent=Msa0199420-mRNA-1 |
chr2_1 | exon | 18377111 | 18377530 | 18377111 | ID=Msa0199420-mRNA-1:exon:7745;Parent=Msa0199420-mRNA-1 |
chr2_1 | five_prime_UTR | 18374202 | 18374484 | 18374202 | ID=Msa0199420-mRNA-1:five_prime_utr;Parent=Msa0199420-mRNA-1 |
chr2_1 | five_prime_UTR | 18375453 | 18375663 | 18375453 | ID=Msa0199420-mRNA-1:five_prime_utr;Parent=Msa0199420-mRNA-1 |
chr2_1 | CDS | 18375664 | 18376138 | 18375664 | ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1 |
chr2_1 | CDS | 18376768 | 18376912 | 18376768 | ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1 |
chr2_1 | CDS | 18377111 | 18377165 | 18377111 | ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1 |
chr2_1 | three_prime_UTR | 18377166 | 18377530 | 18377166 | ID=Msa0199420-mRNA-1:three_prime_utr;Parent=Msa0199420-mRNA-1 |
Gene Sequence |
Protein sequence |