AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199420 MtrunA17_Chr2g0294131 96.396 222 8 0 1 222 1 222 7.25e-156 431
Msa0199420 MtrunA17_Chr4g0068671 52.439 246 88 7 1 222 1 241 6.53e-46 152
Msa0199420 MtrunA17_Chr1g0194401 46.104 154 80 3 51 203 29 180 5.33e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199420 AT3G17120.4 39.316 234 104 7 6 220 2 216 3.61e-32 117
Msa0199420 AT3G17120.2 39.316 234 104 7 6 220 2 216 3.61e-32 117
Msa0199420 AT3G17120.1 39.316 234 104 7 6 220 2 216 3.61e-32 117
Msa0199420 AT3G17120.5 39.316 234 104 7 6 220 2 216 3.61e-32 117
Msa0199420 AT3G17120.3 39.316 234 104 7 6 220 2 216 3.61e-32 117
Msa0199420 AT1G02380.1 36.957 230 129 9 1 219 1 225 6.62e-31 114
Msa0199420 AT4G01960.1 44.361 133 66 5 92 222 106 232 2.42e-22 91.7
Msa0199420 AT4G01960.2 44.361 133 66 5 92 222 106 232 2.42e-22 91.7
Msa0199420 AT4G01960.3 38.857 175 86 6 1 159 1 170 7.76e-18 79.0

Find 90 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATTTGGATTGGATTTC+TGG 0.086428 2_1:+18375633 Msa0199420:five_prime_UTR
ATTGGTTAATATACATAAAA+AGG 0.151621 2_1:-18377319 None:intergenic
TATTTCAAGATTCGAAATTA+TGG 0.194087 2_1:-18374306 None:intergenic
ATGATTTCTGGTGGATTTCT+TGG 0.197075 2_1:+18375754 Msa0199420:CDS
ACTAACAAGGTGGGAGAATT+TGG 0.197160 2_1:+18375620 Msa0199420:five_prime_UTR
TTATGTATATTAACCAATAT+TGG 0.201367 2_1:+18377324 Msa0199420:three_prime_UTR
TTCCTTTCCCTTCTCTAAAA+AGG 0.210267 2_1:+18374463 Msa0199420:five_prime_UTR
CCCTCATTGGATCAATCTTT+AGG 0.232432 2_1:+18374439 Msa0199420:five_prime_UTR
AGGAGAATCTCTATGATTTC+TGG 0.254863 2_1:+18375742 Msa0199420:CDS
TGGATTGGATTTCTGGTGTT+TGG 0.257601 2_1:+18375640 Msa0199420:five_prime_UTR
TATGTATATTAACCAATATT+GGG 0.260942 2_1:+18377325 Msa0199420:three_prime_UTR
CCTCATTGGATCAATCTTTA+GGG 0.265612 2_1:+18374440 Msa0199420:five_prime_UTR
TGATGGTTTATGATCGATTA+AGG 0.267940 2_1:+18375496 Msa0199420:five_prime_UTR
TTTCTTGGAGGTTCTGTTAA+TGG 0.278154 2_1:+18375769 Msa0199420:CDS
AACAGAAGAGGGTTTGATTT+CGG 0.331881 2_1:+18376832 Msa0199420:CDS
GGATTGGATTTCTGGTGTTT+GGG 0.341954 2_1:+18375641 Msa0199420:five_prime_UTR
TATGATGAAAGTGGTGAATA+AGG 0.354251 2_1:+18375849 Msa0199420:CDS
AGCAGATCATAAACTAATAA+AGG 0.356004 2_1:+18375957 Msa0199420:CDS
GGCGCATTTGAATCACTTGA+TGG 0.361497 2_1:-18376872 None:intergenic
TTAATGTTTCTTAATGTGAT+TGG 0.368070 2_1:+18377287 Msa0199420:three_prime_UTR
TGTTGCAAGCAGTCATTTGA+TGG 0.376762 2_1:+18375479 Msa0199420:five_prime_UTR
TTGTGGAGGTCGCGGAGGTT+TGG 0.387403 2_1:-18375917 None:intergenic
GCATATTCTTCAACCCTCAT+TGG 0.387913 2_1:+18374426 Msa0199420:five_prime_UTR
TTTGCAGGCATGTCGTCAAC+TGG 0.390033 2_1:+18376761 Msa0199420:intron
ATATGCAGAGAGAGAGGTAA+AGG 0.399380 2_1:-18374409 None:intergenic
TACTTGATGGACTCCGACCC+TGG 0.400464 2_1:-18376893 None:intergenic
TTCTCACTGGCTTGCCAGAT+AGG 0.401627 2_1:+18377389 Msa0199420:three_prime_UTR
ATGATTGAAGGTATCTGAAT+CGG 0.402197 2_1:+18375443 Msa0199420:intron
CGAATCTTGAAATATTCATA+AGG 0.407464 2_1:+18374315 Msa0199420:five_prime_UTR
TGCGTTGTTGTCTTGATTAA+CGG 0.410720 2_1:-18374281 None:intergenic
ATTGAAGTTGATATTGAAAG+TGG 0.415838 2_1:+18375694 Msa0199420:CDS
TCTGTTCCTCCTGCTGATAC+AGG 0.426655 2_1:-18376815 None:intergenic
TGGATTTCTGGTGTTTGGGA+TGG 0.426787 2_1:+18375645 Msa0199420:exon
CTTGAGTTATCTTCGATAAG+TGG 0.433854 2_1:-18375721 None:intergenic
AGATTTGATTGAGAAAAGAT+AGG 0.439239 2_1:-18374257 None:intergenic
ACCTCCACAAGGCCCGTCCT+TGG 0.439286 2_1:+18375930 Msa0199420:CDS
ATTTCTGGTGGATTTCTTGG+AGG 0.445274 2_1:+18375757 Msa0199420:CDS
TATGCAGAGAGAGAGGTAAA+GGG 0.446830 2_1:-18374408 None:intergenic
GAGGTAAAGGGAAAAGAAGA+AGG 0.455217 2_1:-18374396 None:intergenic
GATTCATTCAAATAAGAACT+TGG 0.458751 2_1:-18375802 None:intergenic
GACGGGCCTTGTGGAGGTCG+CGG 0.460222 2_1:-18375925 None:intergenic
TGATTGAAGGTATCTGAATC+GGG 0.461073 2_1:+18375444 Msa0199420:intron
ATTGAGAAAAGATAGGAAAG+AGG 0.469936 2_1:-18374250 None:intergenic
TTTGGGATGGATCAAAGAAA+TGG 0.470867 2_1:+18375658 Msa0199420:exon
TGAAGAATATGCAGAGAGAG+AGG 0.475557 2_1:-18374415 None:intergenic
TGATCTGCTGCGTCCAAGGA+CGG 0.481315 2_1:-18375943 None:intergenic
TCAAGTGATTCAAATGCGCC+AGG 0.485179 2_1:+18376875 Msa0199420:CDS
CAAGGTGGGAGAATTTGGAT+TGG 0.503439 2_1:+18375625 Msa0199420:five_prime_UTR
GCGTCCAAGGACGGGCCTTG+TGG 0.508349 2_1:-18375934 None:intergenic
GATCTGCTGCGTCCAAGGAC+GGG 0.514090 2_1:-18375942 None:intergenic
TTTATGATCTGCTGCGTCCA+AGG 0.515942 2_1:-18375947 None:intergenic
ATTCAAATAAGAACTTGGCC+TGG 0.519471 2_1:-18375797 None:intergenic
GAGTTTAAGATTTGTTCAAA+AGG 0.522254 2_1:-18374343 None:intergenic
CAAGGATCTCCTGTATCAGC+AGG 0.526670 2_1:+18376806 Msa0199420:CDS
ATGTATATTAACCAATATTG+GGG 0.531280 2_1:+18377326 Msa0199420:three_prime_UTR
CAAGAGTGGTAATTCTGCTA+TGG 0.535692 2_1:-18377363 None:intergenic
AGCTCAGTGTCAAGTTTCCA+AGG 0.545861 2_1:+18376788 Msa0199420:CDS
TCCAAGGACGGGCCTTGTGG+AGG 0.547784 2_1:-18375931 None:intergenic
AGGTAAAGGGAAAAGAAGAA+GGG 0.553678 2_1:-18374395 None:intergenic
AAGATAGGAAAGAGGTGTGA+CGG 0.553834 2_1:-18374242 None:intergenic
TGTATCTATGACATTACAGT+TGG 0.557830 2_1:-18374214 None:intergenic
AGAATCTCTATGATTTCTGG+TGG 0.557872 2_1:+18375745 Msa0199420:CDS
TTGTGTATTAAAATATGAGA+TGG 0.561705 2_1:+18377209 Msa0199420:three_prime_UTR
TTAGTACATCGTATTAATTG+AGG 0.561939 2_1:+18375521 Msa0199420:five_prime_UTR
GTTCTGTTAATGGCGAAGCC+AGG 0.564549 2_1:+18375779 Msa0199420:CDS
CCCTAAAGATTGATCCAATG+AGG 0.566363 2_1:-18374440 None:intergenic
TTGTAGAGTACTAACAAGGT+GGG 0.568297 2_1:+18375611 Msa0199420:five_prime_UTR
CTGCTGATACAGGAGATCCT+TGG 0.569492 2_1:-18376805 None:intergenic
TTGCGATGTTGAAGCGTGCA+AGG 0.575727 2_1:+18375992 Msa0199420:CDS
TTCTGTGAATATGATGAAAG+TGG 0.576188 2_1:+18375840 Msa0199420:CDS
GTACATCGTATTAATTGAGG+AGG 0.592449 2_1:+18375524 Msa0199420:five_prime_UTR
TTCATTGTGATAATCTGCCA+AGG 0.593747 2_1:+18376117 Msa0199420:CDS
GGATGGATCAAAGAAATGGA+AGG 0.596860 2_1:+18375662 Msa0199420:exon
TGATTCAAATGCGCCAGGGT+CGG 0.597497 2_1:+18376880 Msa0199420:CDS
TCAGCAGGAGGAACAGAAGA+GGG 0.604684 2_1:+18376821 Msa0199420:CDS
ATCAGCAGGAGGAACAGAAG+AGG 0.608715 2_1:+18376820 Msa0199420:CDS
ATCTAATAGCAGCAGCATTG+TGG 0.611367 2_1:+18376071 Msa0199420:CDS
GGGCCTTGTGGAGGTCGCGG+AGG 0.611484 2_1:-18375922 None:intergenic
AAACCTCCGCGACCTCCACA+AGG 0.611809 2_1:+18375919 Msa0199420:CDS
AATCACTTGATGGATTGAGT+TGG 0.614440 2_1:-18376862 None:intergenic
CCTAAAGATTGATCCAATGA+GGG 0.615614 2_1:-18374439 None:intergenic
CACTTATCGAAGATAACTCA+AGG 0.618096 2_1:+18375722 Msa0199420:CDS
TGTATATTAACCAATATTGG+GGG 0.618643 2_1:+18377327 Msa0199420:three_prime_UTR
CATGGTCGTTGACATTGAGA+TGG 0.619878 2_1:+18377451 Msa0199420:three_prime_UTR
ATGCTGCTGCTATTAGATGA+CGG 0.623369 2_1:-18376066 None:intergenic
GATGGATCAAAGAAATGGAA+GGG 0.642676 2_1:+18375663 Msa0199420:exon
TTTGTAGAGTACTAACAAGG+TGG 0.646867 2_1:+18375610 Msa0199420:five_prime_UTR
GTATATTAACCAATATTGGG+GGG 0.649906 2_1:+18377328 Msa0199420:three_prime_UTR
CAAGTGATTCAAATGCGCCA+GGG 0.667412 2_1:+18376876 Msa0199420:CDS
GGATCTCCTGTATCAGCAGG+AGG 0.672344 2_1:+18376809 Msa0199420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATTTGTTTTTTC+TGG + chr2_1:18374948-18374967 Msa0199420:intron 10.0%
!!! TTTTATTATTTGTTTTTTCT+GGG + chr2_1:18374949-18374968 Msa0199420:intron 10.0%
!! AACAAATTACTAAAAAAAAA+TGG - chr2_1:18375309-18375328 None:intergenic 10.0%
!!! ATTAATTTTTTTTCTTTCTG+TGG + chr2_1:18374752-18374771 Msa0199420:intron 15.0%
!!! TTCTTATGATTTTAGATTTA+AGG + chr2_1:18374793-18374812 Msa0199420:intron 15.0%
!! TTGGTTAATATACATAAAAA+GGG - chr2_1:18377321-18377340 None:intergenic 15.0%
!! ATTGGTTAATATACATAAAA+AGG - chr2_1:18377322-18377341 None:intergenic 15.0%
!! TTATGTATATTAACCAATAT+TGG + chr2_1:18377324-18377343 Msa0199420:three_prime_UTR 15.0%
!! TATGTATATTAACCAATATT+GGG + chr2_1:18377325-18377344 Msa0199420:three_prime_UTR 15.0%
!! TATTTCAAGATTCGAAATTA+TGG - chr2_1:18374309-18374328 None:intergenic 20.0%
!!! TTTGTCTTTTTTCATTTTCA+TGG + chr2_1:18374511-18374530 Msa0199420:intron 20.0%
!!! ATTAATTTTTTTCCTTCTTC+TGG + chr2_1:18374577-18374596 Msa0199420:intron 20.0%
!!! TTAATTTTTTTCCTTCTTCT+GGG + chr2_1:18374578-18374597 Msa0199420:intron 20.0%
!!! TTGTCTTTTTTCATTTTCAT+GGG + chr2_1:18374512-18374531 Msa0199420:intron 20.0%
!!! TTTTGTCACTATTTGAAAAT+TGG + chr2_1:18375129-18375148 Msa0199420:intron 20.0%
!! TTTGTCACTATTTGAAAATT+GGG + chr2_1:18375130-18375149 Msa0199420:intron 20.0%
!!! ATGATAATTTTCCCTTTAAT+GGG - chr2_1:18375224-18375243 None:intergenic 20.0%
!!! TATGATAATTTTCCCTTTAA+TGG - chr2_1:18375225-18375244 None:intergenic 20.0%
!!! ATTTGTTTTTAGAGAACTAA+TGG + chr2_1:18375322-18375341 Msa0199420:intron 20.0%
!! ATTACTATCAAATTTCATCA+TGG + chr2_1:18376443-18376462 Msa0199420:intron 20.0%
!!! AATTTTTTGTATGTTTGGAA+TGG - chr2_1:18376690-18376709 None:intergenic 20.0%
!! TTCCAAACATACAAAAAATT+TGG + chr2_1:18376690-18376709 Msa0199420:intron 20.0%
!!! AACCAAATTTTTTGTATGTT+TGG - chr2_1:18376695-18376714 None:intergenic 20.0%
!! AAACATACAAAAAATTTGGT+TGG + chr2_1:18376694-18376713 Msa0199420:intron 20.0%
!! CAACCATTAGATTAATTAAA+TGG - chr2_1:18377004-18377023 None:intergenic 20.0%
!!! ATATTTTAATACACAAGTGA+TGG - chr2_1:18377205-18377224 None:intergenic 20.0%
!! TTGTGTATTAAAATATGAGA+TGG + chr2_1:18377209-18377228 Msa0199420:three_prime_UTR 20.0%
!! TTAATGTTTCTTAATGTGAT+TGG + chr2_1:18377287-18377306 Msa0199420:three_prime_UTR 20.0%
!! ATGTATATTAACCAATATTG+GGG + chr2_1:18377326-18377345 Msa0199420:three_prime_UTR 20.0%
! AGATTTGATTGAGAAAAGAT+AGG - chr2_1:18374260-18374279 None:intergenic 25.0%
! CGAATCTTGAAATATTCATA+AGG + chr2_1:18374315-18374334 Msa0199420:five_prime_UTR 25.0%
!! GAGTTTAAGATTTGTTCAAA+AGG - chr2_1:18374346-18374365 None:intergenic 25.0%
!!! GTAATTACCTTTTTAGAGAA+GGG - chr2_1:18374473-18374492 None:intergenic 25.0%
!!! AGTAATTACCTTTTTAGAGA+AGG - chr2_1:18374474-18374493 None:intergenic 25.0%
!!! TAATTTTTTTCCTTCTTCTG+GGG + chr2_1:18374579-18374598 Msa0199420:intron 25.0%
!!! GTTGTCTTTTTTCATTTTCA+TGG + chr2_1:18374881-18374900 Msa0199420:intron 25.0%
! TTGTCACTATTTGAAAATTG+GGG + chr2_1:18375131-18375150 Msa0199420:intron 25.0%
! AAGCTTAAAGTTATGTCATT+TGG + chr2_1:18375163-18375182 Msa0199420:intron 25.0%
! CAAAGATAAAACCCATTAAA+GGG + chr2_1:18375210-18375229 Msa0199420:intron 25.0%
! AAATGGTATAATCCTTTGAA+AGG - chr2_1:18375292-18375311 None:intergenic 25.0%
!!! TAGTAAATAGAGTTTTAGAG+AGG + chr2_1:18375351-18375370 Msa0199420:intron 25.0%
! TTAGTACATCGTATTAATTG+AGG + chr2_1:18375521-18375540 Msa0199420:five_prime_UTR 25.0%
!!! AGGAGGTTTTTTTATATGAT+GGG + chr2_1:18375541-18375560 Msa0199420:five_prime_UTR 25.0%
!!! ATTGAAGTTGATATTGAAAG+TGG + chr2_1:18375694-18375713 Msa0199420:CDS 25.0%
! GATTCATTCAAATAAGAACT+TGG - chr2_1:18375805-18375824 None:intergenic 25.0%
! AGCAGATCATAAACTAATAA+AGG + chr2_1:18375957-18375976 Msa0199420:CDS 25.0%
!! AATTTTATATGGCCTAATAG+AGG - chr2_1:18376289-18376308 None:intergenic 25.0%
! TCGCCATTTAATTAATCTAA+TGG + chr2_1:18376998-18377017 Msa0199420:intron 25.0%
! TGTATATTAACCAATATTGG+GGG + chr2_1:18377327-18377346 Msa0199420:three_prime_UTR 25.0%
!!! CTTTTGAAGCTAAAAAACAA+TGG + chr2_1:18377482-18377501 Msa0199420:three_prime_UTR 25.0%
TGTATCTATGACATTACAGT+TGG - chr2_1:18374217-18374236 None:intergenic 30.0%
ATTGAGAAAAGATAGGAAAG+AGG - chr2_1:18374253-18374272 None:intergenic 30.0%
AACCCTCAAATGATGATAAT+GGG - chr2_1:18374540-18374559 None:intergenic 30.0%
TAACCCTCAAATGATGATAA+TGG - chr2_1:18374541-18374560 None:intergenic 30.0%
! TTGCCTTTTTCCATTTTCAT+GGG + chr2_1:18374673-18374692 Msa0199420:intron 30.0%
ATACCCCAAATGAAGATAAT+GGG - chr2_1:18374701-18374720 None:intergenic 30.0%
AATACCCCAAATGAAGATAA+TGG - chr2_1:18374702-18374721 None:intergenic 30.0%
! TATTTGAAAATTGGGGCTTT+TGG + chr2_1:18375138-18375157 Msa0199420:intron 30.0%
! ATTTGAAAATTGGGGCTTTT+GGG + chr2_1:18375139-18375158 Msa0199420:intron 30.0%
!!! TTAATGGGTTTTATCTTTGG+AGG - chr2_1:18375209-18375228 None:intergenic 30.0%
!!! CCTTTAATGGGTTTTATCTT+TGG - chr2_1:18375212-18375231 None:intergenic 30.0%
CCAAAGATAAAACCCATTAA+AGG + chr2_1:18375209-18375228 Msa0199420:intron 30.0%
!!! TGTTTTTAGAGAACTAATGG+AGG + chr2_1:18375325-18375344 Msa0199420:intron 30.0%
!! ATGATTGAAGGTATCTGAAT+CGG + chr2_1:18375443-18375462 Msa0199420:intron 30.0%
TGATGGTTTATGATCGATTA+AGG + chr2_1:18375496-18375515 Msa0199420:five_prime_UTR 30.0%
!!! GAGGAGGTTTTTTTATATGA+TGG + chr2_1:18375540-18375559 Msa0199420:five_prime_UTR 30.0%
!! GTTTTTGTAGAGTACTAACA+AGG + chr2_1:18375607-18375626 Msa0199420:five_prime_UTR 30.0%
TTCTGTGAATATGATGAAAG+TGG + chr2_1:18375840-18375859 Msa0199420:CDS 30.0%
TATGATGAAAGTGGTGAATA+AGG + chr2_1:18375849-18375868 Msa0199420:CDS 30.0%
!! TTTTTCCGTTTTTCTTTTGC+TGG - chr2_1:18375877-18375896 None:intergenic 30.0%
AGCAAAAGAAAAACGGAAAA+AGG + chr2_1:18375876-18375895 Msa0199420:CDS 30.0%
! TTGTACCACAAATTTTACCT+TGG - chr2_1:18376137-18376156 None:intergenic 30.0%
GAAACAGATTAGATATGCAA+TGG - chr2_1:18376267-18376286 None:intergenic 30.0%
TCTAATCTGTTTCCTCTATT+AGG + chr2_1:18376274-18376293 Msa0199420:intron 30.0%
AGAAATGCCAAAGAAACAAT+TGG - chr2_1:18376474-18376493 None:intergenic 30.0%
!!! AGTTTTGTTGCATTCATGAT+TGG + chr2_1:18376505-18376524 Msa0199420:intron 30.0%
!!! GTTTGTTTTTGTGCAATGTT+TGG + chr2_1:18376551-18376570 Msa0199420:intron 30.0%
!! TTTTTGTATGTTTGGAATGG+CGG - chr2_1:18376687-18376706 None:intergenic 30.0%
! TAATTAGAAGTTCCTTTTGC+AGG + chr2_1:18376746-18376765 Msa0199420:intron 30.0%
! TGTGTTTTCAACTTACTTGA+TGG - chr2_1:18376909-18376928 None:intergenic 30.0%
GATCAATATCACAACACTAA+GGG - chr2_1:18376951-18376970 None:intergenic 30.0%
GTATATTAACCAATATTGGG+GGG + chr2_1:18377328-18377347 Msa0199420:three_prime_UTR 30.0%
TGAGAAGGTAAAAAGTAACA+GGG - chr2_1:18377415-18377434 None:intergenic 30.0%
TGCGTTGTTGTCTTGATTAA+CGG - chr2_1:18374284-18374303 None:intergenic 35.0%
AGGTAAAGGGAAAAGAAGAA+GGG - chr2_1:18374398-18374417 None:intergenic 35.0%
CCTAAAGATTGATCCAATGA+GGG - chr2_1:18374442-18374461 None:intergenic 35.0%
CCTCATTGGATCAATCTTTA+GGG + chr2_1:18374440-18374459 Msa0199420:five_prime_UTR 35.0%
! TTCCTTTCCCTTCTCTAAAA+AGG + chr2_1:18374463-18374482 Msa0199420:five_prime_UTR 35.0%
!! TACCTTTTTAGAGAAGGGAA+AGG - chr2_1:18374468-18374487 None:intergenic 35.0%
TTGCCCATTATCATCATTTG+AGG + chr2_1:18374534-18374553 Msa0199420:intron 35.0%
TGCCCATTATCATCATTTGA+GGG + chr2_1:18374535-18374554 Msa0199420:intron 35.0%
TATCATCATTTGAGGGTTAG+AGG + chr2_1:18374542-18374561 Msa0199420:intron 35.0%
AATTATTCAACCCCAGAAGA+AGG - chr2_1:18374592-18374611 None:intergenic 35.0%
! GTTGCCTTTTTCCATTTTCA+TGG + chr2_1:18374672-18374691 Msa0199420:intron 35.0%
!! ATTTGGGGTATTGACTTTGA+GGG + chr2_1:18374710-18374729 Msa0199420:intron 35.0%
!! TACCCCCAAATTTTGATGAT+GGG - chr2_1:18374910-18374929 None:intergenic 35.0%
!! ATACCCCCAAATTTTGATGA+TGG - chr2_1:18374911-18374930 None:intergenic 35.0%
!! AATTTGGGGGTATTGACTTT+AGG + chr2_1:18374918-18374937 Msa0199420:intron 35.0%
!! ATTTGGGGGTATTGACTTTA+GGG + chr2_1:18374919-18374938 Msa0199420:intron 35.0%
CAAAGCAATGCAGACATAAA+TGG - chr2_1:18375044-18375063 None:intergenic 35.0%
TCTTTGTTCCTTTCTTCTCA+AGG + chr2_1:18375089-18375108 Msa0199420:intron 35.0%
CAAAAAGTCCTTGAGAAGAA+AGG - chr2_1:18375100-18375119 None:intergenic 35.0%
!! TGATTGAAGGTATCTGAATC+GGG + chr2_1:18375444-18375463 Msa0199420:intron 35.0%
GTACATCGTATTAATTGAGG+AGG + chr2_1:18375524-18375543 Msa0199420:five_prime_UTR 35.0%
! TTTGTAGAGTACTAACAAGG+TGG + chr2_1:18375610-18375629 Msa0199420:five_prime_UTR 35.0%
! TTGTAGAGTACTAACAAGGT+GGG + chr2_1:18375611-18375630 Msa0199420:five_prime_UTR 35.0%
! GAGAATTTGGATTGGATTTC+TGG + chr2_1:18375633-18375652 Msa0199420:five_prime_UTR 35.0%
! TTTGGGATGGATCAAAGAAA+TGG + chr2_1:18375658-18375677 Msa0199420:exon 35.0%
GATGGATCAAAGAAATGGAA+GGG + chr2_1:18375663-18375682 Msa0199420:exon 35.0%
CTTGAGTTATCTTCGATAAG+TGG - chr2_1:18375724-18375743 None:intergenic 35.0%
CACTTATCGAAGATAACTCA+AGG + chr2_1:18375722-18375741 Msa0199420:CDS 35.0%
AGGAGAATCTCTATGATTTC+TGG + chr2_1:18375742-18375761 Msa0199420:CDS 35.0%
! AGAATCTCTATGATTTCTGG+TGG + chr2_1:18375745-18375764 Msa0199420:CDS 35.0%
!! ATGATTTCTGGTGGATTTCT+TGG + chr2_1:18375754-18375773 Msa0199420:CDS 35.0%
TTTCTTGGAGGTTCTGTTAA+TGG + chr2_1:18375769-18375788 Msa0199420:CDS 35.0%
ATTCAAATAAGAACTTGGCC+TGG - chr2_1:18375800-18375819 None:intergenic 35.0%
TTCATTGTGATAATCTGCCA+AGG + chr2_1:18376117-18376136 Msa0199420:CDS 35.0%
ATCTGCCAAGGTAAAATTTG+TGG + chr2_1:18376129-18376148 Msa0199420:intron 35.0%
TATGCAATGGTCACAAAACA+AGG - chr2_1:18376254-18376273 None:intergenic 35.0%
! GGTTTGTCCAATTGTTTCTT+TGG + chr2_1:18376464-18376483 Msa0199420:intron 35.0%
GTTTCTTTGGCATTTCTTTC+TGG + chr2_1:18376477-18376496 Msa0199420:intron 35.0%
CAAAAACAAACAATACCGCA+GGG - chr2_1:18376542-18376561 None:intergenic 35.0%
ACAAAAACAAACAATACCGC+AGG - chr2_1:18376543-18376562 None:intergenic 35.0%
TTGTGCAATGTTTGGATTGA+CGG + chr2_1:18376559-18376578 Msa0199420:intron 35.0%
!! CGGAGATTTTAGAGATATCA+CGG + chr2_1:18376579-18376598 Msa0199420:intron 35.0%
!! AGATTTTAGAGATATCACGG+TGG + chr2_1:18376582-18376601 Msa0199420:intron 35.0%
TTCCATCATAAGCTACACTT+TGG - chr2_1:18376629-18376648 None:intergenic 35.0%
! AACAGAAGAGGGTTTGATTT+CGG + chr2_1:18376832-18376851 Msa0199420:CDS 35.0%
!! AATCACTTGATGGATTGAGT+TGG - chr2_1:18376865-18376884 None:intergenic 35.0%
GGATCAATATCACAACACTA+AGG - chr2_1:18376952-18376971 None:intergenic 35.0%
TAATGGTTGAAATTTCGCGA+GGG + chr2_1:18377015-18377034 Msa0199420:intron 35.0%
! ATGTGAAATTTTCCGCTTGA+TGG + chr2_1:18377082-18377101 Msa0199420:intron 35.0%
CTGAGAAGGTAAAAAGTAAC+AGG - chr2_1:18377416-18377435 None:intergenic 35.0%
! AAGATAGGAAAGAGGTGTGA+CGG - chr2_1:18374245-18374264 None:intergenic 40.0%
GAGGTAAAGGGAAAAGAAGA+AGG - chr2_1:18374399-18374418 None:intergenic 40.0%
TATGCAGAGAGAGAGGTAAA+GGG - chr2_1:18374411-18374430 None:intergenic 40.0%
ATATGCAGAGAGAGAGGTAA+AGG - chr2_1:18374412-18374431 None:intergenic 40.0%
TGAAGAATATGCAGAGAGAG+AGG - chr2_1:18374418-18374437 None:intergenic 40.0%
GCATATTCTTCAACCCTCAT+TGG + chr2_1:18374426-18374445 Msa0199420:five_prime_UTR 40.0%
CCCTCATTGGATCAATCTTT+AGG + chr2_1:18374439-18374458 Msa0199420:five_prime_UTR 40.0%
CCCTAAAGATTGATCCAATG+AGG - chr2_1:18374443-18374462 None:intergenic 40.0%
GCACCCATGAAAATGGAAAA+AGG - chr2_1:18374679-18374698 None:intergenic 40.0%
!! ATAATGGGCACCCATGAAAA+TGG - chr2_1:18374686-18374705 None:intergenic 40.0%
GGTGCCCATTATCTTCATTT+GGG + chr2_1:18374694-18374713 Msa0199420:intron 40.0%
GTGCCCATTATCTTCATTTG+GGG + chr2_1:18374695-18374714 Msa0199420:intron 40.0%
!! CATTTGGGGTATTGACTTTG+AGG + chr2_1:18374709-18374728 Msa0199420:intron 40.0%
!! GTATTGACTTTGAGGGTTAG+AGG + chr2_1:18374717-18374736 Msa0199420:intron 40.0%
GGTGCCCATCATCAAAATTT+GGG + chr2_1:18374903-18374922 Msa0199420:intron 40.0%
GTGCCCATCATCAAAATTTG+GGG + chr2_1:18374904-18374923 Msa0199420:intron 40.0%
TGCCCATCATCAAAATTTGG+GGG + chr2_1:18374905-18374924 Msa0199420:intron 40.0%
!!! TTCGTCACTTTTTGTGATGC+AGG + chr2_1:18375260-18375279 Msa0199420:intron 40.0%
TGCAGGTTTAGTCCTTTCAA+AGG + chr2_1:18375277-18375296 Msa0199420:intron 40.0%
! GAGAGGAAGAGAAGTAGTTT+TGG + chr2_1:18375368-18375387 Msa0199420:intron 40.0%
!!! AGGAAGAGAAGTAGTTTTGG+AGG + chr2_1:18375371-18375390 Msa0199420:intron 40.0%
CGTGGATGGTTTATGATTGA+AGG + chr2_1:18375431-18375450 Msa0199420:intron 40.0%
TGTTGCAAGCAGTCATTTGA+TGG + chr2_1:18375479-18375498 Msa0199420:five_prime_UTR 40.0%
ACTAACAAGGTGGGAGAATT+TGG + chr2_1:18375620-18375639 Msa0199420:five_prime_UTR 40.0%
!! TGGATTGGATTTCTGGTGTT+TGG + chr2_1:18375640-18375659 Msa0199420:five_prime_UTR 40.0%
!! GGATTGGATTTCTGGTGTTT+GGG + chr2_1:18375641-18375660 Msa0199420:five_prime_UTR 40.0%
GGATGGATCAAAGAAATGGA+AGG + chr2_1:18375662-18375681 Msa0199420:exon 40.0%
!! ATTTCTGGTGGATTTCTTGG+AGG + chr2_1:18375757-18375776 Msa0199420:CDS 40.0%
AGGCTCCAGCAAAAGAAAAA+CGG + chr2_1:18375869-18375888 Msa0199420:CDS 40.0%
! AGAAAAACGGAAAAAGGCGT+CGG + chr2_1:18375882-18375901 Msa0199420:CDS 40.0%
ATGCTGCTGCTATTAGATGA+CGG - chr2_1:18376069-18376088 None:intergenic 40.0%
ATCTAATAGCAGCAGCATTG+TGG + chr2_1:18376071-18376090 Msa0199420:CDS 40.0%
AGTGAGTACACGAGAAATCA+TGG + chr2_1:18376350-18376369 Msa0199420:intron 40.0%
GTGAGTACACGAGAAATCAT+GGG + chr2_1:18376351-18376370 Msa0199420:intron 40.0%
TACACGAGAAATCATGGGTT+TGG + chr2_1:18376356-18376375 Msa0199420:intron 40.0%
! GAGAAATCATGGGTTTGGTT+TGG + chr2_1:18376361-18376380 Msa0199420:intron 40.0%
TTGGATTAAACTACTCCCTG+CGG + chr2_1:18376524-18376543 Msa0199420:intron 40.0%
CTCCAAAGTGTAGCTTATGA+TGG + chr2_1:18376624-18376643 Msa0199420:intron 40.0%
! AGCTTATGATGGAATCACGA+TGG + chr2_1:18376635-18376654 Msa0199420:intron 40.0%
! TATCTCGTAGTGGGATTCAA+AGG - chr2_1:18376973-18376992 None:intergenic 40.0%
CTAATGGTTGAAATTTCGCG+AGG + chr2_1:18377014-18377033 Msa0199420:intron 40.0%
AATGGTTGAAATTTCGCGAG+GGG + chr2_1:18377016-18377035 Msa0199420:intron 40.0%
ACAAAACTGCAACCATCAAG+CGG - chr2_1:18377097-18377116 None:intergenic 40.0%
!! ATGGTTGCAGTTTTGTACAG+CGG + chr2_1:18377101-18377120 Msa0199420:intron 40.0%
CAGATTCGCAAGAAAAACTG+AGG + chr2_1:18377134-18377153 Msa0199420:CDS 40.0%
TTTAACTCACCCCCCAATAT+TGG - chr2_1:18377340-18377359 None:intergenic 40.0%
CAAGAGTGGTAATTCTGCTA+TGG - chr2_1:18377366-18377385 None:intergenic 40.0%
!!! ACCACTCTTGTTTTTCTCAC+TGG + chr2_1:18377376-18377395 Msa0199420:three_prime_UTR 40.0%
AAAAAGTAACAGGGCCTATC+TGG - chr2_1:18377406-18377425 None:intergenic 40.0%
GCAACAAAAAGTTGCTGAGA+AGG - chr2_1:18377430-18377449 None:intergenic 40.0%
! CAGCAACTTTTTGTTGCTCA+TGG + chr2_1:18377433-18377452 Msa0199420:three_prime_UTR 40.0%
GGGTGCCCATTATCTTCATT+TGG + chr2_1:18374693-18374712 Msa0199420:intron 45.0%
GGGTGCCCATCATCAAAATT+TGG + chr2_1:18374902-18374921 Msa0199420:intron 45.0%
CTGTCTGTATCTGTCTAACG+TGG + chr2_1:18375413-18375432 Msa0199420:intron 45.0%
CTGTATCTGTCTAACGTGGA+TGG + chr2_1:18375417-18375436 Msa0199420:intron 45.0%
CAAGGTGGGAGAATTTGGAT+TGG + chr2_1:18375625-18375644 Msa0199420:five_prime_UTR 45.0%
!! TGGATTTCTGGTGTTTGGGA+TGG + chr2_1:18375645-18375664 Msa0199420:exon 45.0%
!! GAAAAACGGAAAAAGGCGTC+GGG + chr2_1:18375883-18375902 Msa0199420:CDS 45.0%
!! GAAAAAGGCGTCGGGTAAAA+AGG + chr2_1:18375891-18375910 Msa0199420:CDS 45.0%
TTTATGATCTGCTGCGTCCA+AGG - chr2_1:18375950-18375969 None:intergenic 45.0%
AGCTCAGTGTCAAGTTTCCA+AGG + chr2_1:18376788-18376807 Msa0199420:CDS 45.0%
GGCGCATTTGAATCACTTGA+TGG - chr2_1:18376875-18376894 None:intergenic 45.0%
TCAAGTGATTCAAATGCGCC+AGG + chr2_1:18376875-18376894 Msa0199420:CDS 45.0%
CAAGTGATTCAAATGCGCCA+GGG + chr2_1:18376876-18376895 Msa0199420:CDS 45.0%
! GCGAAGTGTTATCTCGTAGT+GGG - chr2_1:18376982-18377001 None:intergenic 45.0%
AATTTCGCGAGGGGATAAAG+AGG + chr2_1:18377025-18377044 Msa0199420:intron 45.0%
!! TGGTTGCAGTTTTGTACAGC+GGG + chr2_1:18377102-18377121 Msa0199420:intron 45.0%
TCGCAAGAAAAACTGAGGAC+AGG + chr2_1:18377139-18377158 Msa0199420:CDS 45.0%
GAAAAACTGAGGACAGGTTG+AGG + chr2_1:18377145-18377164 Msa0199420:CDS 45.0%
GCCAGTGAGAAAAACAAGAG+TGG - chr2_1:18377380-18377399 None:intergenic 45.0%
CATGGTCGTTGACATTGAGA+TGG + chr2_1:18377451-18377470 Msa0199420:three_prime_UTR 45.0%
!!! ATAAATATGAAAATTTTATA+TGG - chr2_1:18376300-18376319 None:intergenic 5.0%
GTTCTGTTAATGGCGAAGCC+AGG + chr2_1:18375779-18375798 Msa0199420:CDS 50.0%
TTGCGATGTTGAAGCGTGCA+AGG + chr2_1:18375992-18376011 Msa0199420:CDS 50.0%
! GTTTGGAATGGCGGTGAGTT+TGG - chr2_1:18376678-18376697 None:intergenic 50.0%
GTTGACGACATGCCTGCAAA+AGG - chr2_1:18376761-18376780 None:intergenic 50.0%
TTTGCAGGCATGTCGTCAAC+TGG + chr2_1:18376761-18376780 Msa0199420:intron 50.0%
CTGCTGATACAGGAGATCCT+TGG - chr2_1:18376808-18376827 None:intergenic 50.0%
CAAGGATCTCCTGTATCAGC+AGG + chr2_1:18376806-18376825 Msa0199420:CDS 50.0%
TCTGTTCCTCCTGCTGATAC+AGG - chr2_1:18376818-18376837 None:intergenic 50.0%
ATCAGCAGGAGGAACAGAAG+AGG + chr2_1:18376820-18376839 Msa0199420:CDS 50.0%
TCAGCAGGAGGAACAGAAGA+GGG + chr2_1:18376821-18376840 Msa0199420:CDS 50.0%
TGATTCAAATGCGCCAGGGT+CGG + chr2_1:18376880-18376899 Msa0199420:CDS 50.0%
! GGCGAAGTGTTATCTCGTAG+TGG - chr2_1:18376983-18377002 None:intergenic 50.0%
!! AGTTTTGTACAGCGGGTGTC+AGG + chr2_1:18377109-18377128 Msa0199420:intron 50.0%
!! TTCTCACTGGCTTGCCAGAT+AGG + chr2_1:18377389-18377408 Msa0199420:three_prime_UTR 50.0%
TGATCTGCTGCGTCCAAGGA+CGG - chr2_1:18375946-18375965 None:intergenic 55.0%
GGATCTCCTGTATCAGCAGG+AGG + chr2_1:18376809-18376828 Msa0199420:CDS 55.0%
!! TACTTGATGGACTCCGACCC+TGG - chr2_1:18376896-18376915 None:intergenic 55.0%
TTGTGGAGGTCGCGGAGGTT+TGG - chr2_1:18375920-18375939 None:intergenic 60.0%
AAACCTCCGCGACCTCCACA+AGG + chr2_1:18375919-18375938 Msa0199420:CDS 60.0%
GATCTGCTGCGTCCAAGGAC+GGG - chr2_1:18375945-18375964 None:intergenic 60.0%
ACCTCCACAAGGCCCGTCCT+TGG + chr2_1:18375930-18375949 Msa0199420:CDS 65.0%
! TCCAAGGACGGGCCTTGTGG+AGG - chr2_1:18375934-18375953 None:intergenic 65.0%
! GACGGGCCTTGTGGAGGTCG+CGG - chr2_1:18375928-18375947 None:intergenic 70.0%
GCGTCCAAGGACGGGCCTTG+TGG - chr2_1:18375937-18375956 None:intergenic 70.0%
! GGGCCTTGTGGAGGTCGCGG+AGG - chr2_1:18375925-18375944 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 18374202 18377530 18374202 ID=Msa0199420;Name=Msa0199420
chr2_1 mRNA 18374202 18377530 18374202 ID=Msa0199420-mRNA-1;Parent=Msa0199420;Name=Msa0199420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=494|1|1|1|0.66|0.5|4|365|224
chr2_1 exon 18374202 18374484 18374202 ID=Msa0199420-mRNA-1:exon:7742;Parent=Msa0199420-mRNA-1
chr2_1 exon 18375453 18376138 18375453 ID=Msa0199420-mRNA-1:exon:7743;Parent=Msa0199420-mRNA-1
chr2_1 exon 18376768 18376912 18376768 ID=Msa0199420-mRNA-1:exon:7744;Parent=Msa0199420-mRNA-1
chr2_1 exon 18377111 18377530 18377111 ID=Msa0199420-mRNA-1:exon:7745;Parent=Msa0199420-mRNA-1
chr2_1 five_prime_UTR 18374202 18374484 18374202 ID=Msa0199420-mRNA-1:five_prime_utr;Parent=Msa0199420-mRNA-1
chr2_1 five_prime_UTR 18375453 18375663 18375453 ID=Msa0199420-mRNA-1:five_prime_utr;Parent=Msa0199420-mRNA-1
chr2_1 CDS 18375664 18376138 18375664 ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1
chr2_1 CDS 18376768 18376912 18376768 ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1
chr2_1 CDS 18377111 18377165 18377111 ID=Msa0199420-mRNA-1:cds;Parent=Msa0199420-mRNA-1
chr2_1 three_prime_UTR 18377166 18377530 18377166 ID=Msa0199420-mRNA-1:three_prime_utr;Parent=Msa0199420-mRNA-1
Gene Sequence

>Msa0199420

ATGGATCAAAGAAATGGAAGGGAGAAAGATATTGAAGTTGATATTGAAAGTGGATTGCCACTTATCGAAGATAACTCAAGGAGAATCTCTATGATTTCTGGTGGATTTCTTGGAGGTTCTGTTAATGGCGAAGCCAGGCCAAGTTCTTATTTGAATGAATCAAATTTAAGTGAAGTTTCTGTGAATATGATGAAAGTGGTGAATAAGGCTCCAGCAAAAGAAAAACGGAAAAAGGCGTCGGGTAAAAAGGCTGCCAAACCTCCGCGACCTCCACAAGGCCCGTCCTTGGACGCAGCAGATCATAAACTAATAAAGGAGATGTCTGAACTTGCGATGTTGAAGCGTGCAAGGATAGAGCGTATGAAAGCATTGAAGAAAATGAGAACTGCGAAATCGTCATCGCCGTCATCTAATAGCAGCAGCATTGTGGCTATGATTTTCACTGTTATCTTCTTCATTGTGATAATCTGCCAAGGCATGTCGTCAACTGGAAAAAGCTCAGTGTCAAGTTTCCAAGGATCTCCTGTATCAGCAGGAGGAACAGAAGAGGGTTTGATTTCGGTTCAGTACCAACTCAATCCATCAAGTGATTCAAATGCGCCAGGGTCGGAGTCCATCAATTTTGTACAGCGGGTGTCAGGTTCAGATTCGCAAGAAAAACTGAGGACAGGTTGA

Protein sequence

>Msa0199420

MDQRNGREKDIEVDIESGLPLIEDNSRRISMISGGFLGGSVNGEARPSSYLNESNLSEVSVNMMKVVNKAPAKEKRKKASGKKAAKPPRPPQGPSLDAADHKLIKEMSELAMLKRARIERMKALKKMRTAKSSSPSSNSSSIVAMIFTVIFFIVIICQGMSSTGKSSVSSFQGSPVSAGGTEEGLISVQYQLNPSSDSNAPGSESINFVQRVSGSDSQEKLRTG*