AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436110 MtrunA17_Chr3g0144211 96.053 228 6 2 1 225 1 228 1.38e-160 443
Msa0436110 MtrunA17_Chr1g0179681 38.764 178 80 4 50 222 90 243 1.04e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436110 AT1G20810.1 63.913 230 64 4 3 222 5 225 6.13e-90 265
Msa0436110 AT1G20810.2 71.676 173 48 1 44 215 46 218 4.83e-80 239
Msa0436110 AT3G10060.1 41.916 167 69 4 60 222 74 216 1.09e-28 108

Find 66 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGCTTCCTTTCCTTTC+CGG 0.156985 3_2:+89443791 None:intergenic
GTGATTGTTCCTCCTGAAAA+AGG 0.202905 3_2:-89443550 Msa0436110:CDS
TCACGCTTCCTTTCCTTTCC+GGG 0.259693 3_2:+89443792 None:intergenic
CTTCTTCTTGCGTCTTTCTC+TGG 0.307570 3_2:+89444597 None:intergenic
TACATGGCTTGTGGAGGTTT+TGG 0.308187 3_2:+89443726 None:intergenic
AATGAAATGGATAGAATATA+TGG 0.315993 3_2:-89444857 Msa0436110:five_prime_UTR
AAAGGCCCAATAGCTGAAAA+AGG 0.368705 3_2:-89444388 Msa0436110:CDS
AAAGGGAATGAATGAGATTC+CGG 0.389171 3_2:-89443518 Msa0436110:intron
TAACAACCAAGTTAACGAAT+TGG 0.394998 3_2:+89444771 None:intergenic
GAGAAATCGAAGAAATGAAA+TGG 0.417294 3_2:-89444870 Msa0436110:five_prime_UTR
GCTCCCACCTTGAATTCATA+TGG 0.419789 3_2:+89443819 None:intergenic
TGTGCTGAGAATAGACCATT+TGG 0.426502 3_2:+89443756 None:intergenic
TCCTTCAACTATTGTGTACA+TGG 0.428423 3_2:+89443710 None:intergenic
CGTCTTTCTCTGGCCTCCGC+TGG 0.429487 3_2:+89444607 None:intergenic
ATTGGAACTGCAAGTGTAAA+GGG 0.437508 3_2:+89444789 None:intergenic
TTGAAAGCCATATGAATTCA+AGG 0.444661 3_2:-89443826 Msa0436110:intron
ACTTCAGAGTTTGTACCCTA+TGG 0.446621 3_2:-89443066 Msa0436110:three_prime_UTR
CGAGAATCTAAACTCCTAGC+TGG 0.452386 3_2:-89444216 Msa0436110:CDS
CTTGAGACGACGGGCATTGA+CGG 0.457214 3_2:-89444713 Msa0436110:CDS
TCTCTGGCCTCCGCTGGTGG+TGG 0.460486 3_2:+89444613 None:intergenic
GGAAGTGACATAATCATCAA+TGG 0.467741 3_2:+89444567 None:intergenic
TAACTTGGTTGTTACAGAAA+CGG 0.475122 3_2:-89444762 Msa0436110:CDS
GCAGTTCCAATTCGTTAACT+TGG 0.483413 3_2:-89444777 Msa0436110:CDS
CTTTCTCTGGCCTCCGCTGG+TGG 0.484138 3_2:+89444610 None:intergenic
AATTGGAACTGCAAGTGTAA+AGG 0.497189 3_2:+89444788 None:intergenic
CCTCCGCTGGTGGTGGAGAG+AGG 0.497265 3_2:+89444620 None:intergenic
AAACGGAACGTTGATCATTA+CGG 0.500002 3_2:-89444745 Msa0436110:CDS
TTTAGTTCAAATGTAGCTCC+AGG 0.505276 3_2:+89443164 None:intergenic
GCCATGTACACAATAGTTGA+AGG 0.511563 3_2:-89443711 Msa0436110:CDS
CTATAACACGATTTCCAGCT+AGG 0.516210 3_2:+89444202 None:intergenic
CAAATTGCAGCCACGAGAGA+AGG 0.519056 3_2:+89442908 None:intergenic
GAAGTGACATAATCATCAAT+GGG 0.521859 3_2:+89444568 None:intergenic
TTCAAGGTGGGAGCTCCGCC+CGG 0.533829 3_2:-89443810 Msa0436110:CDS
GTGCTGAGAATAGACCATTT+GGG 0.537998 3_2:+89443757 None:intergenic
TTCTCAATCGAGAAGGTCCA+CGG 0.543491 3_2:-89444680 Msa0436110:CDS
AGGTTTCAGCTTGAGACGAC+GGG 0.544817 3_2:-89444722 Msa0436110:CDS
GAATTTGTCGACAACCCAAA+TGG 0.547525 3_2:-89443771 Msa0436110:CDS
TGGAAATCGTGTTATAGCCC+AGG 0.548668 3_2:-89444196 Msa0436110:intron
CCTCTCTCCACCACCAGCGG+AGG 0.550932 3_2:-89444620 Msa0436110:CDS
CACTTTGATTGTTTATATCG+CGG 0.551543 3_2:-89444258 Msa0436110:CDS
AATGGGAAAAGAATAGCCAT+AGG 0.558220 3_2:+89443050 None:intergenic
CACTTATCTTCCTTCTCTCG+TGG 0.565134 3_2:-89442918 Msa0436110:three_prime_UTR
AAATATTGAACTTCTGCAAG+TGG 0.566237 3_2:-89443144 Msa0436110:CDS
GAGAGGAAAACGAAGGTGAA+AGG 0.571097 3_2:+89444637 None:intergenic
GGTGGGAGCTCCGCCCGGAA+AGG 0.571793 3_2:-89443805 Msa0436110:CDS
GTTGAAGGAATGCGAGTGGG+TGG 0.575403 3_2:-89443696 Msa0436110:CDS
TTTCCTCTCTCCACCACCAG+CGG 0.582844 3_2:-89444623 Msa0436110:CDS
ACTATTGTGTACATGGCTTG+TGG 0.588221 3_2:+89443717 None:intergenic
ACGACGGGCATTGACGGTGT+TGG 0.590833 3_2:-89444707 Msa0436110:CDS
ATGGGAAAAGAATAGCCATA+GGG 0.608451 3_2:+89443051 None:intergenic
AATATATGGTAAAATAGTAG+AGG 0.614260 3_2:-89444843 Msa0436110:five_prime_UTR
GAGCTCCGCCCGGAAAGGAA+AGG 0.619888 3_2:-89443800 Msa0436110:CDS
CGCTTCCTTTCCTTTCCGGG+CGG 0.626353 3_2:+89443795 None:intergenic
TGGCACTTTCTCAATCGAGA+AGG 0.634172 3_2:-89444687 Msa0436110:CDS
AGGAATGCGAGTGGGTGGAA+AGG 0.636293 3_2:-89443691 Msa0436110:intron
GAGGTTTCAGCTTGAGACGA+CGG 0.646422 3_2:-89444723 Msa0436110:CDS
ATGGTAAAATAGTAGAGGTG+AGG 0.650278 3_2:-89444838 Msa0436110:five_prime_UTR
AAGCCATATGAATTCAAGGT+GGG 0.651080 3_2:-89443822 Msa0436110:CDS
AATAGTTGAAGGAATGCGAG+TGG 0.658026 3_2:-89443700 Msa0436110:CDS
TGATGAAATAAGAATCGCCG+TGG 0.665477 3_2:+89444663 None:intergenic
ATAGTTGAAGGAATGCGAGT+GGG 0.666151 3_2:-89443699 Msa0436110:CDS
ATTGTGTACATGGCTTGTGG+AGG 0.674657 3_2:+89443720 None:intergenic
CGGAACGTTGATCATTACGG+AGG 0.678320 3_2:-89444742 Msa0436110:CDS
TGGTGGAGAGAGGAAAACGA+AGG 0.707066 3_2:+89444630 None:intergenic
GATCTCAATATATATGTACG+TGG 0.729740 3_2:-89442880 Msa0436110:three_prime_UTR
AAAGCCATATGAATTCAAGG+TGG 0.730629 3_2:-89443823 Msa0436110:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAGTATATAAGAAAT+AGG + chr3_2:89443749-89443768 None:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - chr3_2:89444094-89444113 Msa0436110:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - chr3_2:89444401-89444420 Msa0436110:CDS 15.0%
!! CATTAAAGTATATAAGAAAT+AGG + chr3_2:89443749-89443768 None:intergenic 15.0%
!!! ATTATTTTTCTCTTAAATGA+TGG - chr3_2:89444094-89444113 Msa0436110:intron 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG - chr3_2:89444401-89444420 Msa0436110:CDS 15.0%
!! AATGAAATGGATAGAATATA+TGG - chr3_2:89442822-89442841 Msa0436110:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - chr3_2:89442836-89442855 Msa0436110:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - chr3_2:89443266-89443285 Msa0436110:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - chr3_2:89443267-89443286 Msa0436110:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + chr3_2:89443511-89443530 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + chr3_2:89443717-89443736 None:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + chr3_2:89444365-89444384 None:intergenic 20.0%
!! AATGAAATGGATAGAATATA+TGG - chr3_2:89442822-89442841 Msa0436110:three_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG - chr3_2:89442836-89442855 Msa0436110:three_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG - chr3_2:89443266-89443285 Msa0436110:intron 20.0%
!!! AAATACTATGATTTTCTTGA+GGG - chr3_2:89443267-89443286 Msa0436110:intron 20.0%
!! AAACTAAATAGGCAAATTAT+TGG + chr3_2:89443511-89443530 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG + chr3_2:89443717-89443736 None:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG + chr3_2:89444365-89444384 None:intergenic 20.0%
! AACATAGTTTAACAGCAAAT+GGG + chr3_2:89443163-89443182 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + chr3_2:89443716-89443735 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + chr3_2:89443718-89443737 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + chr3_2:89443742-89443761 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + chr3_2:89444241-89444260 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + chr3_2:89444277-89444296 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - chr3_2:89444286-89444305 Msa0436110:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + chr3_2:89444649-89444668 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - chr3_2:89444664-89444683 Msa0436110:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + chr3_2:89444695-89444714 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + chr3_2:89444755-89444774 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - chr3_2:89444820-89444839 Msa0436110:exon 25.0%
! ATTTCATTTCTTCGATTTCT+CGG + chr3_2:89442810-89442829 None:intergenic 25.0%
! AACATAGTTTAACAGCAAAT+GGG + chr3_2:89443163-89443182 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG + chr3_2:89443716-89443735 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG + chr3_2:89443718-89443737 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG + chr3_2:89443742-89443761 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG + chr3_2:89444241-89444260 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG + chr3_2:89444277-89444296 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG - chr3_2:89444286-89444305 Msa0436110:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG + chr3_2:89444649-89444668 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG - chr3_2:89444664-89444683 Msa0436110:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG + chr3_2:89444695-89444714 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG + chr3_2:89444755-89444774 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG - chr3_2:89444820-89444839 Msa0436110:exon 25.0%
GAGAAATCGAAGAAATGAAA+TGG - chr3_2:89442809-89442828 Msa0436110:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + chr3_2:89442911-89442930 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - chr3_2:89442917-89442936 Msa0436110:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + chr3_2:89443114-89443133 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + chr3_2:89443164-89443183 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - chr3_2:89443273-89443292 Msa0436110:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + chr3_2:89443299-89443318 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - chr3_2:89443421-89443440 Msa0436110:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - chr3_2:89443569-89443588 Msa0436110:intron 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - chr3_2:89443774-89443793 Msa0436110:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - chr3_2:89443853-89443872 Msa0436110:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + chr3_2:89444144-89444163 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - chr3_2:89444143-89444162 Msa0436110:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - chr3_2:89444144-89444163 Msa0436110:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + chr3_2:89444276-89444295 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + chr3_2:89444278-89444297 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - chr3_2:89444535-89444554 Msa0436110:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + chr3_2:89444650-89444669 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + chr3_2:89444663-89444682 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - chr3_2:89444663-89444682 Msa0436110:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + chr3_2:89444744-89444763 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - chr3_2:89444799-89444818 Msa0436110:CDS 30.0%
TTTCATTTCTTCGATTTCTC+GGG + chr3_2:89442809-89442828 None:intergenic 30.0%
GAGAAATCGAAGAAATGAAA+TGG - chr3_2:89442809-89442828 Msa0436110:three_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG + chr3_2:89442911-89442930 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG - chr3_2:89442917-89442936 Msa0436110:three_prime_UTR 30.0%
GAAGTGACATAATCATCAAT+GGG + chr3_2:89443114-89443133 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG + chr3_2:89443164-89443183 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG - chr3_2:89443273-89443292 Msa0436110:intron 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG + chr3_2:89443299-89443318 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG - chr3_2:89443421-89443440 Msa0436110:intron 30.0%
TCAATGCTAGTTGTAACTAT+CGG - chr3_2:89443569-89443588 Msa0436110:intron 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG - chr3_2:89443774-89443793 Msa0436110:CDS 30.0%
TTGAAAGCCATATGAATTCA+AGG - chr3_2:89443853-89443872 Msa0436110:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG + chr3_2:89444144-89444163 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG - chr3_2:89444143-89444162 Msa0436110:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG - chr3_2:89444144-89444163 Msa0436110:intron 30.0%
!! TTCAATAGATTTGCTAGATG+GGG + chr3_2:89444276-89444295 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG + chr3_2:89444278-89444297 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG - chr3_2:89444535-89444554 Msa0436110:intron 30.0%
CAAAAAGAGGAAAACATCAA+TGG + chr3_2:89444650-89444669 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG + chr3_2:89444663-89444682 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG - chr3_2:89444663-89444682 Msa0436110:CDS 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG + chr3_2:89444744-89444763 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG - chr3_2:89444799-89444818 Msa0436110:CDS 30.0%
ATGGTAAAATAGTAGAGGTG+AGG - chr3_2:89442841-89442860 Msa0436110:three_prime_UTR 35.0%
ATTGGAACTGCAAGTGTAAA+GGG + chr3_2:89442893-89442912 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + chr3_2:89442894-89442913 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - chr3_2:89442934-89442953 Msa0436110:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + chr3_2:89443115-89443134 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + chr3_2:89443300-89443319 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - chr3_2:89443305-89443324 Msa0436110:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + chr3_2:89443503-89443522 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + chr3_2:89443504-89443523 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + chr3_2:89443522-89443541 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + chr3_2:89443712-89443731 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - chr3_2:89443856-89443875 Msa0436110:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - chr3_2:89443857-89443876 Msa0436110:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + chr3_2:89443972-89443991 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + chr3_2:89444025-89444044 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + chr3_2:89444026-89444045 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - chr3_2:89444130-89444149 Msa0436110:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - chr3_2:89444161-89444180 Msa0436110:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + chr3_2:89444183-89444202 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + chr3_2:89444518-89444537 None:intergenic 35.0%
ATGGGAAAAGAATAGCCATA+GGG + chr3_2:89444631-89444650 None:intergenic 35.0%
AATGGGAAAAGAATAGCCAT+AGG + chr3_2:89444632-89444651 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + chr3_2:89444701-89444720 None:intergenic 35.0%
ATGGTAAAATAGTAGAGGTG+AGG - chr3_2:89442841-89442860 Msa0436110:three_prime_UTR 35.0%
ATTGGAACTGCAAGTGTAAA+GGG + chr3_2:89442893-89442912 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG + chr3_2:89442894-89442913 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG - chr3_2:89442934-89442953 Msa0436110:three_prime_UTR 35.0%
GGAAGTGACATAATCATCAA+TGG + chr3_2:89443115-89443134 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG + chr3_2:89443300-89443319 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG - chr3_2:89443305-89443324 Msa0436110:intron 35.0%
TAGGCAAATTATTGGAACCT+GGG + chr3_2:89443503-89443522 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG + chr3_2:89443504-89443523 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG + chr3_2:89443522-89443541 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG + chr3_2:89443712-89443731 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG - chr3_2:89443856-89443875 Msa0436110:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG - chr3_2:89443857-89443876 Msa0436110:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG + chr3_2:89443972-89443991 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG + chr3_2:89444025-89444044 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG + chr3_2:89444026-89444045 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG - chr3_2:89444130-89444149 Msa0436110:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG - chr3_2:89444161-89444180 Msa0436110:intron 35.0%
TGACAAGAACAGATCTTTAC+CGG + chr3_2:89444183-89444202 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG + chr3_2:89444518-89444537 None:intergenic 35.0%
ATGGGAAAAGAATAGCCATA+GGG + chr3_2:89444631-89444650 None:intergenic 35.0%
AATGGGAAAAGAATAGCCAT+AGG + chr3_2:89444632-89444651 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG + chr3_2:89444701-89444720 None:intergenic 35.0%
GCAGTTCCAATTCGTTAACT+TGG - chr3_2:89442902-89442921 Msa0436110:three_prime_UTR 40.0%
TGATGAAATAAGAATCGCCG+TGG + chr3_2:89443019-89443038 None:intergenic 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + chr3_2:89443136-89443155 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + chr3_2:89443137-89443156 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - chr3_2:89443240-89443259 Msa0436110:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - chr3_2:89443291-89443310 Msa0436110:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + chr3_2:89443480-89443499 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + chr3_2:89443677-89443696 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + chr3_2:89443711-89443730 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + chr3_2:89443820-89443839 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + chr3_2:89443842-89443861 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - chr3_2:89443908-89443927 Msa0436110:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + chr3_2:89443925-89443944 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + chr3_2:89443926-89443945 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + chr3_2:89443965-89443984 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - chr3_2:89443968-89443987 Msa0436110:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - chr3_2:89443979-89443998 Msa0436110:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - chr3_2:89443980-89443999 Msa0436110:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + chr3_2:89444027-89444046 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - chr3_2:89444129-89444148 Msa0436110:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + chr3_2:89444141-89444160 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + chr3_2:89444319-89444338 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - chr3_2:89444497-89444516 Msa0436110:intron 40.0%
ACTTCAGAGTTTGTACCCTA+TGG - chr3_2:89444613-89444632 Msa0436110:CDS 40.0%
GCAGTTCCAATTCGTTAACT+TGG - chr3_2:89442902-89442921 Msa0436110:three_prime_UTR 40.0%
TGATGAAATAAGAATCGCCG+TGG + chr3_2:89443019-89443038 None:intergenic 40.0%
TTGAGTGAGGAAGGAATTAC+GGG + chr3_2:89443136-89443155 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG + chr3_2:89443137-89443156 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG - chr3_2:89443240-89443259 Msa0436110:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG - chr3_2:89443291-89443310 Msa0436110:intron 40.0%
CTATAACACGATTTCCAGCT+AGG + chr3_2:89443480-89443499 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG + chr3_2:89443677-89443696 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG + chr3_2:89443711-89443730 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG + chr3_2:89443820-89443839 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG + chr3_2:89443842-89443861 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG - chr3_2:89443908-89443927 Msa0436110:intron 40.0%
GTGCTGAGAATAGACCATTT+GGG + chr3_2:89443925-89443944 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG + chr3_2:89443926-89443945 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG + chr3_2:89443965-89443984 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG - chr3_2:89443968-89443987 Msa0436110:intron 40.0%
AATAGTTGAAGGAATGCGAG+TGG - chr3_2:89443979-89443998 Msa0436110:intron 40.0%
ATAGTTGAAGGAATGCGAGT+GGG - chr3_2:89443980-89443999 Msa0436110:intron 40.0%
CGCACTAGAACAAAATCAAG+AGG + chr3_2:89444027-89444046 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG - chr3_2:89444129-89444148 Msa0436110:intron 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG + chr3_2:89444141-89444160 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG + chr3_2:89444319-89444338 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG - chr3_2:89444497-89444516 Msa0436110:intron 40.0%
ACTTCAGAGTTTGTACCCTA+TGG - chr3_2:89444613-89444632 Msa0436110:CDS 40.0%
TGGCACTTTCTCAATCGAGA+AGG - chr3_2:89442992-89443011 Msa0436110:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - chr3_2:89442999-89443018 Msa0436110:three_prime_UTR 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + chr3_2:89443045-89443064 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + chr3_2:89443085-89443104 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + chr3_2:89443145-89443164 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + chr3_2:89443149-89443168 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - chr3_2:89443463-89443482 Msa0436110:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - chr3_2:89443483-89443502 Msa0436110:intron 45.0%
CACACACAAACACTGACACA+CGG + chr3_2:89443536-89443555 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - chr3_2:89443542-89443561 Msa0436110:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - chr3_2:89443543-89443562 Msa0436110:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + chr3_2:89443863-89443882 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + chr3_2:89443891-89443910 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + chr3_2:89443956-89443975 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + chr3_2:89443962-89443981 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - chr3_2:89444135-89444154 Msa0436110:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + chr3_2:89444268-89444287 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - chr3_2:89444300-89444319 Msa0436110:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + chr3_2:89444348-89444367 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + chr3_2:89444476-89444495 None:intergenic 45.0%
CACTTATCTTCCTTCTCTCG+TGG - chr3_2:89444761-89444780 Msa0436110:CDS 45.0%
TGGCACTTTCTCAATCGAGA+AGG - chr3_2:89442992-89443011 Msa0436110:three_prime_UTR 45.0%
TTCTCAATCGAGAAGGTCCA+CGG - chr3_2:89442999-89443018 Msa0436110:three_prime_UTR 45.0%
GAGAGGAAAACGAAGGTGAA+AGG + chr3_2:89443045-89443064 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG + chr3_2:89443085-89443104 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG + chr3_2:89443145-89443164 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG + chr3_2:89443149-89443168 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG - chr3_2:89443463-89443482 Msa0436110:intron 45.0%
TGGAAATCGTGTTATAGCCC+AGG - chr3_2:89443483-89443502 Msa0436110:intron 45.0%
CACACACAAACACTGACACA+CGG + chr3_2:89443536-89443555 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG - chr3_2:89443542-89443561 Msa0436110:CDS 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG - chr3_2:89443543-89443562 Msa0436110:CDS 45.0%
GCTCCCACCTTGAATTCATA+TGG + chr3_2:89443863-89443882 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG + chr3_2:89443891-89443910 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG + chr3_2:89443956-89443975 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG + chr3_2:89443962-89443981 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG - chr3_2:89444135-89444154 Msa0436110:intron 45.0%
! ATTTGCTAGATGGGGACATC+AGG + chr3_2:89444268-89444287 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG - chr3_2:89444300-89444319 Msa0436110:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG + chr3_2:89444348-89444367 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG + chr3_2:89444476-89444495 None:intergenic 45.0%
CACTTATCTTCCTTCTCTCG+TGG - chr3_2:89444761-89444780 Msa0436110:CDS 45.0%
CGGAACGTTGATCATTACGG+AGG - chr3_2:89442937-89442956 Msa0436110:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - chr3_2:89442956-89442975 Msa0436110:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - chr3_2:89442957-89442976 Msa0436110:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + chr3_2:89443052-89443071 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - chr3_2:89443396-89443415 Msa0436110:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + chr3_2:89443810-89443829 None:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + chr3_2:89443890-89443909 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + chr3_2:89444774-89444793 None:intergenic 50.0%
CGGAACGTTGATCATTACGG+AGG - chr3_2:89442937-89442956 Msa0436110:three_prime_UTR 50.0%
GAGGTTTCAGCTTGAGACGA+CGG - chr3_2:89442956-89442975 Msa0436110:three_prime_UTR 50.0%
AGGTTTCAGCTTGAGACGAC+GGG - chr3_2:89442957-89442976 Msa0436110:three_prime_UTR 50.0%
TGGTGGAGAGAGGAAAACGA+AGG + chr3_2:89443052-89443071 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG - chr3_2:89443396-89443415 Msa0436110:intron 50.0%
GCATTCAACACGGTCACGTA+AGG + chr3_2:89443810-89443829 None:intergenic 50.0%
TCACGCTTCCTTTCCTTTCC+GGG + chr3_2:89443890-89443909 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG + chr3_2:89444774-89444793 None:intergenic 50.0%
!! CTTGAGACGACGGGCATTGA+CGG - chr3_2:89442966-89442985 Msa0436110:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - chr3_2:89443056-89443075 Msa0436110:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - chr3_2:89443983-89444002 Msa0436110:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - chr3_2:89443988-89444007 Msa0436110:intron 55.0%
!! CTTGAGACGACGGGCATTGA+CGG - chr3_2:89442966-89442985 Msa0436110:three_prime_UTR 55.0%
TTTCCTCTCTCCACCACCAG+CGG - chr3_2:89443056-89443075 Msa0436110:three_prime_UTR 55.0%
GTTGAAGGAATGCGAGTGGG+TGG - chr3_2:89443983-89444002 Msa0436110:intron 55.0%
AGGAATGCGAGTGGGTGGAA+AGG - chr3_2:89443988-89444007 Msa0436110:intron 55.0%
!! ACGACGGGCATTGACGGTGT+TGG - chr3_2:89442972-89442991 Msa0436110:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + chr3_2:89443699-89443718 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + chr3_2:89443887-89443906 None:intergenic 60.0%
!! ACGACGGGCATTGACGGTGT+TGG - chr3_2:89442972-89442991 Msa0436110:three_prime_UTR 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG + chr3_2:89443699-89443718 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG + chr3_2:89443887-89443906 None:intergenic 60.0%
CTTTCTCTGGCCTCCGCTGG+TGG + chr3_2:89443072-89443091 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + chr3_2:89443075-89443094 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - chr3_2:89443869-89443888 Msa0436110:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - chr3_2:89443879-89443898 Msa0436110:intron 65.0%
CTTTCTCTGGCCTCCGCTGG+TGG + chr3_2:89443072-89443091 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG + chr3_2:89443075-89443094 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG - chr3_2:89443869-89443888 Msa0436110:intron 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG - chr3_2:89443879-89443898 Msa0436110:intron 65.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + chr3_2:89443062-89443081 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - chr3_2:89443059-89443078 Msa0436110:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + chr3_2:89443069-89443088 None:intergenic 70.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG + chr3_2:89443062-89443081 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG - chr3_2:89443059-89443078 Msa0436110:three_prime_UTR 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG + chr3_2:89443069-89443088 None:intergenic 70.0%
GGTGGGAGCTCCGCCCGGAA+AGG - chr3_2:89443874-89443893 Msa0436110:intron 75.0%
GGTGGGAGCTCCGCCCGGAA+AGG - chr3_2:89443874-89443893 Msa0436110:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89442809 89444892 89442809 ID=Msa0436110;Name=Msa0436110
chr3_2 mRNA 89442809 89444892 89442809 ID=Msa0436110-mRNA-1;Parent=Msa0436110;Name=Msa0436110-mRNA-1;_AED=0.13;_eAED=0.13;_QI=71|1|1|1|1|1|6|324|225
chr3_2 exon 89442809 89443186 89442809 ID=Msa0436110-mRNA-1:exon:26565;Parent=Msa0436110-mRNA-1
chr3_2 exon 89443519 89443578 89443519 ID=Msa0436110-mRNA-1:exon:26564;Parent=Msa0436110-mRNA-1
chr3_2 exon 89443692 89443841 89443692 ID=Msa0436110-mRNA-1:exon:26563;Parent=Msa0436110-mRNA-1
chr3_2 exon 89444197 89444283 89444197 ID=Msa0436110-mRNA-1:exon:26562;Parent=Msa0436110-mRNA-1
chr3_2 exon 89444375 89444445 89444375 ID=Msa0436110-mRNA-1:exon:26561;Parent=Msa0436110-mRNA-1
chr3_2 exon 89444566 89444892 89444566 ID=Msa0436110-mRNA-1:exon:26560;Parent=Msa0436110-mRNA-1
chr3_2 five_prime_UTR 89444822 89444892 89444822 ID=Msa0436110-mRNA-1:five_prime_utr;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89444566 89444821 89444566 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89444375 89444445 89444375 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89444197 89444283 89444197 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89443692 89443841 89443692 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89443519 89443578 89443519 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 CDS 89443133 89443186 89443133 ID=Msa0436110-mRNA-1:cds;Parent=Msa0436110-mRNA-1
chr3_2 three_prime_UTR 89442809 89443132 89442809 ID=Msa0436110-mRNA-1:three_prime_utr;Parent=Msa0436110-mRNA-1
Gene Sequence

>Msa0436110

ATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGCACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCATTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCCTGATGGATTAAAATACTATGATTTTCTTGAGGGAAAAGGCCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGCGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTTATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>Msa0436110

MTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLALSQSRRSTAILISSLPFTFVFLSPPPAEARERRKKKNIPIDDYVTSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*