AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131640 MtrunA17_Chr1g0192381 90.875 263 7 3 1 246 3 265 4.80e-174 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131640 AT3G05625.1 65.354 254 66 5 4 244 9 253 8.33e-114 327
Msa0131640 AT3G05625.2 62.963 189 48 5 4 179 9 188 2.78e-74 224

Find 80 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCCTTCCTTCTGTTTC+CGG 0.124019 1_3:+62511123 Msa0131640:CDS
TTCACTGTCTTTGCCGAAAT+TGG 0.138782 1_3:+62513521 Msa0131640:CDS
TTCCTTCTGTTTCCGGCATC+TGG 0.151607 1_3:+62511130 Msa0131640:CDS
AGGTAGTGGTGGTGGGTTTA+AGG 0.199019 1_3:-62511005 None:intergenic
CATTTGTTAGGGTGATGTTT+TGG 0.230806 1_3:+62511300 Msa0131640:intron
GGTTTAAGGTTGTGGATAAT+TGG 0.241491 1_3:-62510991 None:intergenic
GCTGCTTGCAAATCTCCTTA+TGG 0.251539 1_3:+62513367 Msa0131640:CDS
ATGCAGGTCTGATGATTATA+TGG 0.266337 1_3:+62513483 Msa0131640:intron
CTGTGTGAAGCTCAACTATA+TGG 0.307850 1_3:+62512522 Msa0131640:CDS
TTCAGCTGAAGTTCCAATTT+CGG 0.309631 1_3:-62513534 None:intergenic
GGAGAGTAAGGTAGTGGTGG+TGG 0.312943 1_3:-62511013 None:intergenic
GGAAACATATAACATGTTTA+AGG 0.318035 1_3:+62512696 Msa0131640:CDS
ATAATCGCTTTCTCTGCTAT+TGG 0.320277 1_3:-62512896 None:intergenic
TTAGATGAGTGAACTACATT+AGG 0.328037 1_3:+62513746 Msa0131640:three_prime_UTR
GATTTACCCGTGTAGCTTGT+AGG 0.333350 1_3:+62512865 Msa0131640:intron
CTGCTTGCAAATCTCCTTAT+GGG 0.339629 1_3:+62513368 Msa0131640:CDS
ATGGACTCTTCCGTATCATT+TGG 0.341909 1_3:-62512489 None:intergenic
AAATCAAACCTTTGCCCATA+AGG 0.359848 1_3:-62513382 None:intergenic
TGGTGGTGGGTTTAAGGTTG+TGG 0.360687 1_3:-62510999 None:intergenic
AAGAAGGAGCTGAGCAGTTT+CGG 0.373836 1_3:+62512448 Msa0131640:CDS
GTTTGATAAAGCAATTGAAT+TGG 0.379643 1_3:+62511336 Msa0131640:CDS
AATTGCAAGAAGGGCTTCAT+TGG 0.387452 1_3:-62511187 None:intergenic
AGTCTTCGAGAGAGATTTGA+AGG 0.396830 1_3:-62511102 None:intergenic
TCCTTCTGTTTCCGGCATCT+GGG 0.413953 1_3:+62511131 Msa0131640:CDS
TGAAGGATTGGAGCAAAAGA+TGG 0.433606 1_3:-62511085 None:intergenic
TGAATATTAGTTGACTGTAC+TGG 0.442168 1_3:+62513675 Msa0131640:three_prime_UTR
GTTTCCCTCATGACAGGCCT+TGG 0.443161 1_3:-62512679 None:intergenic
GGCATCTGGGACGCCATCAC+CGG 0.445468 1_3:+62511144 Msa0131640:CDS
GACGCCATCACCGGCGGCAG+CGG 0.446702 1_3:+62511153 Msa0131640:CDS
TCGAGAGAGATTTGAAGGAT+TGG 0.454213 1_3:-62511097 None:intergenic
TGGGAATGGTGAAGAAAGGG+AGG 0.470523 1_3:-62511037 None:intergenic
GAGAGTAAGGTAGTGGTGGT+GGG 0.471942 1_3:-62511012 None:intergenic
GGAATGGTGAAGAAAGGGAG+GGG 0.472443 1_3:-62511035 None:intergenic
TTTATGCTTCGCTGTATGCT+GGG 0.475142 1_3:+62512920 Msa0131640:CDS
TTATCTGGAAGACTGGTTGA+TGG 0.477062 1_3:-62513788 None:intergenic
ATTGCCGCTGCCGCCGGTGA+TGG 0.479013 1_3:-62511157 None:intergenic
TGGGCTTTATTACGAATCTC+AGG 0.491384 1_3:+62512939 Msa0131640:CDS
GGTGATGGCGTCCCAGATGC+CGG 0.498720 1_3:-62511142 None:intergenic
GTTGTTATTGCCGCTGCCGC+CGG 0.501222 1_3:-62511163 None:intergenic
ATAAACATTATCTGGAAGAC+TGG 0.502377 1_3:-62513795 None:intergenic
GGTAACAAGCATCGTAGCCC+AGG 0.504504 1_3:-62510902 None:intergenic
GAAGGATTGGAGCAAAAGAT+GGG 0.507555 1_3:-62511084 None:intergenic
GAATGGTGAAGAAAGGGAGG+GGG 0.510959 1_3:-62511034 None:intergenic
TGAATTGGATCCTCGTCAAA+AGG 0.513209 1_3:+62511351 Msa0131640:CDS
TGATGGGAATGGTGAAGAAA+GGG 0.514552 1_3:-62511040 None:intergenic
TTGAAAGATGATGATGATGA+TGG 0.514554 1_3:-62511057 None:intergenic
ATGATACGGAAGAGTCCATA+TGG 0.514782 1_3:+62512493 Msa0131640:CDS
TTATATGTTTCCCTCATGAC+AGG 0.514876 1_3:-62512685 None:intergenic
AAAATTAAGTAAAATGATGA+AGG 0.521273 1_3:-62513641 None:intergenic
TTATATGGCTTCTCTTTCCA+AGG 0.521826 1_3:+62513498 Msa0131640:CDS
GCAAATCTCCTTATGGGCAA+AGG 0.522193 1_3:+62513374 Msa0131640:CDS
TATAACATGTTTAAGGATGG+TGG 0.523328 1_3:+62512703 Msa0131640:CDS
TCCTCGTCGAATTGCAAGAA+GGG 0.524837 1_3:-62511196 None:intergenic
TTCACACAGAAAACACCATA+TGG 0.527292 1_3:-62512508 None:intergenic
ATAACATGTTTAAGGATGGT+GGG 0.535247 1_3:+62512704 Msa0131640:CDS
TGCTCAAAATCCAAATGATA+CGG 0.539447 1_3:+62512479 Msa0131640:CDS
GGATGGTGGGGATCCTGAAA+AGG 0.539874 1_3:+62512717 Msa0131640:CDS
ATGATGGGAATGGTGAAGAA+AGG 0.540510 1_3:-62511041 None:intergenic
AAGGTTGTGGATAATTGGCA+TGG 0.556289 1_3:-62510986 None:intergenic
AGGAATGTCTCTCTTCAGAC+AGG 0.559294 1_3:+62511215 Msa0131640:CDS
TCGGCAAAGACAGTGAACCT+TGG 0.571507 1_3:-62513515 None:intergenic
ATCTGGGACGCCATCACCGG+CGG 0.572114 1_3:+62511147 Msa0131640:CDS
TACATTACAGTCTAAAGAGA+TGG 0.581754 1_3:+62513598 Msa0131640:three_prime_UTR
TCCCAGATGCCGGAAACAGA+AGG 0.582501 1_3:-62511132 None:intergenic
ACATATAACATGTTTAAGGA+TGG 0.584854 1_3:+62512700 Msa0131640:CDS
GATAATTGGCATGGACATAG+TGG 0.585166 1_3:-62510977 None:intergenic
TTCCTCGTCGAATTGCAAGA+AGG 0.589113 1_3:-62511197 None:intergenic
TAACATGTTTAAGGATGGTG+GGG 0.591570 1_3:+62512705 Msa0131640:CDS
TTTAGGTTGGCAGAGATCCA+AGG 0.592463 1_3:+62512662 Msa0131640:intron
GAGATCCAAGGCCTGTCATG+AGG 0.597114 1_3:+62512674 Msa0131640:CDS
GGGAATGGTGAAGAAAGGGA+GGG 0.602416 1_3:-62511036 None:intergenic
GGATTGGAGCAAAAGATGGG+TGG 0.615577 1_3:-62511081 None:intergenic
AGCAAGAAAGCGATATCTTG+AGG 0.633760 1_3:+62512554 Msa0131640:CDS
AGATCCAAGGCCTGTCATGA+GGG 0.634537 1_3:+62512675 Msa0131640:CDS
ATTGGCATGGACATAGTGGA+AGG 0.636804 1_3:-62510973 None:intergenic
AGATGCCGGAAACAGAAGGA+AGG 0.639435 1_3:-62511128 None:intergenic
GTAACAAGCATCGTAGCCCA+GGG 0.652453 1_3:-62510901 None:intergenic
ATCCTCGTCAAAAGGCGTGT+AGG 0.656501 1_3:+62511359 Msa0131640:CDS
GCCCTTCTTGCAATTCGACG+AGG 0.664402 1_3:+62511195 Msa0131640:CDS
TGAAGCTCAACTATATGGTG+TGG 0.677146 1_3:+62512527 Msa0131640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATAAGATATGAAA+TGG - chr1_3:62512243-62512262 None:intergenic 10.0%
!! TATTATAAAAATCATTCATT+TGG - chr1_3:62512406-62512425 None:intergenic 10.0%
!!! TTATTTTATGAAATTTACAA+AGG - chr1_3:62512757-62512776 None:intergenic 10.0%
!! TTGAAATGAATTAAAAAAGT+TGG - chr1_3:62511857-62511876 None:intergenic 15.0%
!!! AAGTACATTTTGTTTAATAA+GGG + chr1_3:62512136-62512155 Msa0131640:intron 15.0%
!! TCTGAATATATTATAACAAA+AGG + chr1_3:62512356-62512375 Msa0131640:intron 15.0%
!! AGATTATATATACATCATAT+TGG + chr1_3:62513033-62513052 Msa0131640:intron 15.0%
!!! TATACTTTATTGTTACTTTT+TGG + chr1_3:62513142-62513161 Msa0131640:intron 15.0%
!! AAAATTAAGTAAAATGATGA+AGG - chr1_3:62513644-62513663 None:intergenic 15.0%
!!! GGATTTAATTATTTTATGTG+GGG - chr1_3:62510926-62510945 None:intergenic 20.0%
!!! CGGATTTAATTATTTTATGT+GGG - chr1_3:62510927-62510946 None:intergenic 20.0%
!! CAGTATCAAAATATCTTTAA+TGG + chr1_3:62511255-62511274 Msa0131640:intron 20.0%
!! AATTGATATTTACGAAAGTT+CGG - chr1_3:62511398-62511417 None:intergenic 20.0%
!! TCGTAAATATCAATTGAATT+TGG + chr1_3:62511403-62511422 Msa0131640:intron 20.0%
!!! ATATCAATTGAATTTGGAAT+TGG + chr1_3:62511409-62511428 Msa0131640:intron 20.0%
!! ATACAAGCTTAATCTAAATT+AGG + chr1_3:62511726-62511745 Msa0131640:intron 20.0%
!!! GTCTATATTTTTAAGAAGAA+TGG - chr1_3:62511887-62511906 None:intergenic 20.0%
!! GAAAGAATATATTCTGATAT+TGG + chr1_3:62511968-62511987 Msa0131640:intron 20.0%
!!! CAAGTACATTTTGTTTAATA+AGG + chr1_3:62512135-62512154 Msa0131640:intron 20.0%
!! TTAACTTTCTTGATGAATTT+AGG + chr1_3:62512645-62512664 Msa0131640:intron 20.0%
!! TAATACACAATATTTCAGTT+TGG - chr1_3:62513205-62513224 None:intergenic 20.0%
!!! CATCATTTTACTTAATTTTG+TGG + chr1_3:62513645-62513664 Msa0131640:three_prime_UTR 20.0%
!!! GCGGATTTAATTATTTTATG+TGG - chr1_3:62510928-62510947 None:intergenic 25.0%
! AACTGGATAATAACTGATAA+TGG - chr1_3:62510952-62510971 None:intergenic 25.0%
! GTTTGATAAAGCAATTGAAT+TGG + chr1_3:62511336-62511355 Msa0131640:CDS 25.0%
!! ATTGAATTTGGAATTGGAAT+TGG + chr1_3:62511415-62511434 Msa0131640:intron 25.0%
! TTATAGCTTCTACAAAATCA+CGG - chr1_3:62511652-62511671 None:intergenic 25.0%
! ATTTAGATTAAGCTTGTATG+TGG - chr1_3:62511725-62511744 None:intergenic 25.0%
!!! ACAATTTTGTGTCATTAGTT+AGG - chr1_3:62511935-62511954 None:intergenic 25.0%
! AGAATATATTCTGATATTGG+TGG + chr1_3:62511971-62511990 Msa0131640:intron 25.0%
!! TTTTTCCATAGATTTGAAGA+AGG + chr1_3:62512432-62512451 Msa0131640:intron 25.0%
!!! ATTGTCATGTTCTTTTTTCA+CGG - chr1_3:62512613-62512632 None:intergenic 25.0%
! GGAAACATATAACATGTTTA+AGG + chr1_3:62512696-62512715 Msa0131640:CDS 25.0%
! ACATATAACATGTTTAAGGA+TGG + chr1_3:62512700-62512719 Msa0131640:CDS 25.0%
! ACTGCATTTAAATTGTGAAA+GGG - chr1_3:62512786-62512805 None:intergenic 25.0%
! AACTGCATTTAAATTGTGAA+AGG - chr1_3:62512787-62512806 None:intergenic 25.0%
! TATCAGATTGCATTTCATAA+AGG - chr1_3:62512836-62512855 None:intergenic 25.0%
! TAGTAAGGAAAGAAAAATGT+TGG - chr1_3:62512979-62512998 None:intergenic 25.0%
! TGAAAGATGATGATGATGAT+GGG - chr1_3:62511059-62511078 None:intergenic 30.0%
! TTGAAAGATGATGATGATGA+TGG - chr1_3:62511060-62511079 None:intergenic 30.0%
! TAACTAGTGCTCATTTGTTA+GGG + chr1_3:62511289-62511308 Msa0131640:intron 30.0%
!! ATTTGTTAGGGTGATGTTTT+GGG + chr1_3:62511301-62511320 Msa0131640:intron 30.0%
! TTTGGAATTGGAATTGGAAT+TGG + chr1_3:62511421-62511440 Msa0131640:intron 30.0%
TTCTGACATACACACTAATT+TGG - chr1_3:62511610-62511629 None:intergenic 30.0%
TAGATATGTTTGAATCACGT+CGG - chr1_3:62511694-62511713 None:intergenic 30.0%
GCTTAATCTAAATTAGGCTA+TGG + chr1_3:62511732-62511751 Msa0131640:intron 30.0%
CGATACTTCAATGATAGTAT+TGG + chr1_3:62511764-62511783 Msa0131640:intron 30.0%
!! TATGTTGCTATTTGTGTGTT+TGG + chr1_3:62512002-62512021 Msa0131640:intron 30.0%
! TATTTGTGTGTTTGGAATCA+TGG + chr1_3:62512010-62512029 Msa0131640:intron 30.0%
AGAAGCTTCATGTTAATATG+TGG + chr1_3:62512052-62512071 Msa0131640:intron 30.0%
GAAGCTTCATGTTAATATGT+GGG + chr1_3:62512053-62512072 Msa0131640:intron 30.0%
AAGCTTCATGTTAATATGTG+GGG + chr1_3:62512054-62512073 Msa0131640:intron 30.0%
!! ACAAACTTGTTAATGTACCT+TGG + chr1_3:62512217-62512236 Msa0131640:intron 30.0%
AATAAGATATGAAATGGCCA+AGG - chr1_3:62512237-62512256 None:intergenic 30.0%
TAGTACAATACGACATGTAT+AGG - chr1_3:62512280-62512299 None:intergenic 30.0%
TGCTCAAAATCCAAATGATA+CGG + chr1_3:62512479-62512498 Msa0131640:CDS 30.0%
!!! TTGTCATGTTCTTTTTTCAC+GGG - chr1_3:62512612-62512631 None:intergenic 30.0%
CTTTCTTGATGAATTTAGGT+TGG + chr1_3:62512649-62512668 Msa0131640:intron 30.0%
TATAACATGTTTAAGGATGG+TGG + chr1_3:62512703-62512722 Msa0131640:CDS 30.0%
ATAACATGTTTAAGGATGGT+GGG + chr1_3:62512704-62512723 Msa0131640:CDS 30.0%
! TTGCATTTCATAAAGGCATA+AGG - chr1_3:62512829-62512848 None:intergenic 30.0%
AGTAACTGGTATAGTTAGTA+AGG - chr1_3:62512994-62513013 None:intergenic 30.0%
ATCTCTTAAGATGTCAAGAT+TGG - chr1_3:62513017-62513036 None:intergenic 30.0%
TGTGTATACATGCATTTGAT+TGG - chr1_3:62513099-62513118 None:intergenic 30.0%
! AGCATCATTTTCATTCTATG+CGG - chr1_3:62513329-62513348 None:intergenic 30.0%
TACATTACAGTCTAAAGAGA+TGG + chr1_3:62513598-62513617 Msa0131640:three_prime_UTR 30.0%
TGAATATTAGTTGACTGTAC+TGG + chr1_3:62513675-62513694 Msa0131640:three_prime_UTR 30.0%
TTAGATGAGTGAACTACATT+AGG + chr1_3:62513746-62513765 Msa0131640:three_prime_UTR 30.0%
!! GATAATAACTGATAATGGCG+CGG - chr1_3:62510947-62510966 None:intergenic 35.0%
! GGTTTAAGGTTGTGGATAAT+TGG - chr1_3:62510994-62511013 None:intergenic 35.0%
GATACTGAAAAGAAACGTTG+TGG - chr1_3:62511242-62511261 None:intergenic 35.0%
CTAACTAGTGCTCATTTGTT+AGG + chr1_3:62511288-62511307 Msa0131640:intron 35.0%
!! CATTTGTTAGGGTGATGTTT+TGG + chr1_3:62511300-62511319 Msa0131640:intron 35.0%
! TTTGTTAGGGTGATGTTTTG+GGG + chr1_3:62511302-62511321 Msa0131640:intron 35.0%
AATACCAGATCTTTGGCAAA+GGG + chr1_3:62511467-62511486 Msa0131640:intron 35.0%
TCTCACTTTACTACTTGGAT+AGG + chr1_3:62511493-62511512 Msa0131640:intron 35.0%
CAGAAAAATAAAAGCAGGTG+AGG - chr1_3:62511527-62511546 None:intergenic 35.0%
!!! CACCTGCTTTTATTTTTCTG+TGG + chr1_3:62511527-62511546 Msa0131640:intron 35.0%
AGCCACAGAAAAATAAAAGC+AGG - chr1_3:62511532-62511551 None:intergenic 35.0%
!!! TGCTTTTATTTTTCTGTGGC+TGG + chr1_3:62511531-62511550 Msa0131640:intron 35.0%
GTATGTCAGAATCACAATCA+CGG + chr1_3:62511619-62511638 Msa0131640:intron 35.0%
TAAGCTTGTATGTGGTATCA+CGG - chr1_3:62511717-62511736 None:intergenic 35.0%
AACACGTACGTACTTGATAT+CGG + chr1_3:62511792-62511811 Msa0131640:intron 35.0%
GATACTTTCTGAGTACACAT+TGG - chr1_3:62511835-62511854 None:intergenic 35.0%
CATGTTAATATGTGGGGAAA+AGG + chr1_3:62512060-62512079 Msa0131640:intron 35.0%
GTGATCATAACAAGTAGAGT+AGG - chr1_3:62512116-62512135 None:intergenic 35.0%
TCGTATTGTACTATGTATGC+AGG + chr1_3:62512287-62512306 Msa0131640:intron 35.0%
TTCACACAGAAAACACCATA+TGG - chr1_3:62512511-62512530 None:intergenic 35.0%
TTATATGTTTCCCTCATGAC+AGG - chr1_3:62512688-62512707 None:intergenic 35.0%
TAACATGTTTAAGGATGGTG+GGG + chr1_3:62512705-62512724 Msa0131640:CDS 35.0%
! ATTATTGAGCACACCTTTTC+AGG - chr1_3:62512733-62512752 None:intergenic 35.0%
ATAATCGCTTTCTCTGCTAT+TGG - chr1_3:62512899-62512918 None:intergenic 35.0%
AGTTACAAAGCTGAAGAAAG+TGG + chr1_3:62513178-62513197 Msa0131640:intron 35.0%
! GCATCATTTTCATTCTATGC+GGG - chr1_3:62513328-62513347 None:intergenic 35.0%
AAATCAAACCTTTGCCCATA+AGG - chr1_3:62513385-62513404 None:intergenic 35.0%
ATGCAGGTCTGATGATTATA+TGG + chr1_3:62513483-62513502 Msa0131640:intron 35.0%
TTATATGGCTTCTCTTTCCA+AGG + chr1_3:62513498-62513517 Msa0131640:CDS 35.0%
TTCAGCTGAAGTTCCAATTT+CGG - chr1_3:62513537-62513556 None:intergenic 35.0%
GATAATTGGCATGGACATAG+TGG - chr1_3:62510980-62510999 None:intergenic 40.0%
AAGGTTGTGGATAATTGGCA+TGG - chr1_3:62510989-62511008 None:intergenic 40.0%
TGATGGGAATGGTGAAGAAA+GGG - chr1_3:62511043-62511062 None:intergenic 40.0%
! ATGATGGGAATGGTGAAGAA+AGG - chr1_3:62511044-62511063 None:intergenic 40.0%
!! GATGATGATGATGATGGGAA+TGG - chr1_3:62511054-62511073 None:intergenic 40.0%
GAAGGATTGGAGCAAAAGAT+GGG - chr1_3:62511087-62511106 None:intergenic 40.0%
TGAAGGATTGGAGCAAAAGA+TGG - chr1_3:62511088-62511107 None:intergenic 40.0%
TCGAGAGAGATTTGAAGGAT+TGG - chr1_3:62511100-62511119 None:intergenic 40.0%
AGTCTTCGAGAGAGATTTGA+AGG - chr1_3:62511105-62511124 None:intergenic 40.0%
AATTGCAAGAAGGGCTTCAT+TGG - chr1_3:62511190-62511209 None:intergenic 40.0%
TGAATTGGATCCTCGTCAAA+AGG + chr1_3:62511351-62511370 Msa0131640:CDS 40.0%
GAGTTCCAATACCAGATCTT+TGG + chr1_3:62511460-62511479 Msa0131640:intron 40.0%
CTTTGCCAAAGATCTGGTAT+TGG - chr1_3:62511468-62511487 None:intergenic 40.0%
CAATACCAGATCTTTGGCAA+AGG + chr1_3:62511466-62511485 Msa0131640:intron 40.0%
ATACCAGATCTTTGGCAAAG+GGG + chr1_3:62511468-62511487 Msa0131640:intron 40.0%
!! TTTTTCTGTGGCTGGTTATG+TGG + chr1_3:62511539-62511558 Msa0131640:intron 40.0%
!! TTTTCTGTGGCTGGTTATGT+GGG + chr1_3:62511540-62511559 Msa0131640:intron 40.0%
AGCTTCTACAAAATCACGGT+TGG - chr1_3:62511648-62511667 None:intergenic 40.0%
ATGCAGGCTTCTTAGAAGTT+AGG + chr1_3:62512303-62512322 Msa0131640:intron 40.0%
CAGCTCCTTCTTCAAATCTA+TGG - chr1_3:62512440-62512459 None:intergenic 40.0%
ATGGACTCTTCCGTATCATT+TGG - chr1_3:62512492-62512511 None:intergenic 40.0%
ATGATACGGAAGAGTCCATA+TGG + chr1_3:62512493-62512512 Msa0131640:CDS 40.0%
CTGTGTGAAGCTCAACTATA+TGG + chr1_3:62512522-62512541 Msa0131640:CDS 40.0%
TGAAGCTCAACTATATGGTG+TGG + chr1_3:62512527-62512546 Msa0131640:CDS 40.0%
AGCAAGAAAGCGATATCTTG+AGG + chr1_3:62512554-62512573 Msa0131640:CDS 40.0%
! TTTTATGCTTCGCTGTATGC+TGG + chr1_3:62512919-62512938 Msa0131640:CDS 40.0%
TTTATGCTTCGCTGTATGCT+GGG + chr1_3:62512920-62512939 Msa0131640:CDS 40.0%
!! TGGGCTTTATTACGAATCTC+AGG + chr1_3:62512939-62512958 Msa0131640:CDS 40.0%
GATGTCAAGATTGGAGTAAC+TGG - chr1_3:62513008-62513027 None:intergenic 40.0%
CTGCTTGCAAATCTCCTTAT+GGG + chr1_3:62513368-62513387 Msa0131640:CDS 40.0%
GCACATGCATTCTTTAATGC+AGG + chr1_3:62513467-62513486 Msa0131640:intron 40.0%
TTCACTGTCTTTGCCGAAAT+TGG + chr1_3:62513521-62513540 Msa0131640:CDS 40.0%
! TGGACATAGTGGAAGGTAAC+TGG - chr1_3:62510969-62510988 None:intergenic 45.0%
! ATTGGCATGGACATAGTGGA+AGG - chr1_3:62510976-62510995 None:intergenic 45.0%
CTCTTCCTTCCTTCTGTTTC+CGG + chr1_3:62511123-62511142 Msa0131640:CDS 45.0%
TCCTCGTCGAATTGCAAGAA+GGG - chr1_3:62511199-62511218 None:intergenic 45.0%
TTCCTCGTCGAATTGCAAGA+AGG - chr1_3:62511200-62511219 None:intergenic 45.0%
AGGAATGTCTCTCTTCAGAC+AGG + chr1_3:62511215-62511234 Msa0131640:CDS 45.0%
!!! TGATGTTTTGGGGTCTGTTG+TGG + chr1_3:62511312-62511331 Msa0131640:CDS 45.0%
GGGTCTCTCACTTTACTACT+TGG + chr1_3:62511488-62511507 Msa0131640:intron 45.0%
AAGAAGGAGCTGAGCAGTTT+CGG + chr1_3:62512448-62512467 Msa0131640:CDS 45.0%
!! TTTAGGTTGGCAGAGATCCA+AGG + chr1_3:62512662-62512681 Msa0131640:intron 45.0%
! GATTTACCCGTGTAGCTTGT+AGG + chr1_3:62512865-62512884 Msa0131640:intron 45.0%
AATGCACCTACAAGCTACAC+GGG - chr1_3:62512874-62512893 None:intergenic 45.0%
GAATGCACCTACAAGCTACA+CGG - chr1_3:62512875-62512894 None:intergenic 45.0%
GCTGCTTGCAAATCTCCTTA+TGG + chr1_3:62513367-62513386 Msa0131640:CDS 45.0%
GCAAATCTCCTTATGGGCAA+AGG + chr1_3:62513374-62513393 Msa0131640:CDS 45.0%
! GTAACAAGCATCGTAGCCCA+GGG - chr1_3:62510904-62510923 None:intergenic 50.0%
!! TGGTGGTGGGTTTAAGGTTG+TGG - chr1_3:62511002-62511021 None:intergenic 50.0%
!! AGGTAGTGGTGGTGGGTTTA+AGG - chr1_3:62511008-62511027 None:intergenic 50.0%
! GAGAGTAAGGTAGTGGTGGT+GGG - chr1_3:62511015-62511034 None:intergenic 50.0%
GAATGGTGAAGAAAGGGAGG+GGG - chr1_3:62511037-62511056 None:intergenic 50.0%
GGAATGGTGAAGAAAGGGAG+GGG - chr1_3:62511038-62511057 None:intergenic 50.0%
GGGAATGGTGAAGAAAGGGA+GGG - chr1_3:62511039-62511058 None:intergenic 50.0%
TGGGAATGGTGAAGAAAGGG+AGG - chr1_3:62511040-62511059 None:intergenic 50.0%
GGATTGGAGCAAAAGATGGG+TGG - chr1_3:62511084-62511103 None:intergenic 50.0%
AGATGCCGGAAACAGAAGGA+AGG - chr1_3:62511131-62511150 None:intergenic 50.0%
TTCCTTCTGTTTCCGGCATC+TGG + chr1_3:62511130-62511149 Msa0131640:CDS 50.0%
TCCTTCTGTTTCCGGCATCT+GGG + chr1_3:62511131-62511150 Msa0131640:CDS 50.0%
! ATCCTCGTCAAAAGGCGTGT+AGG + chr1_3:62511359-62511378 Msa0131640:CDS 50.0%
! AACCTACACGCCTTTTGACG+AGG - chr1_3:62511364-62511383 None:intergenic 50.0%
AGACCCCTTTGCCAAAGATC+TGG - chr1_3:62511474-62511493 None:intergenic 50.0%
AGATCCAAGGCCTGTCATGA+GGG + chr1_3:62512675-62512694 Msa0131640:CDS 50.0%
TCGGCAAAGACAGTGAACCT+TGG - chr1_3:62513518-62513537 None:intergenic 50.0%
! GGTAACAAGCATCGTAGCCC+AGG - chr1_3:62510905-62510924 None:intergenic 55.0%
! GGAGAGTAAGGTAGTGGTGG+TGG - chr1_3:62511016-62511035 None:intergenic 55.0%
AGAAAGGGAGGGGGAGAGTA+AGG - chr1_3:62511028-62511047 None:intergenic 55.0%
TCCCAGATGCCGGAAACAGA+AGG - chr1_3:62511135-62511154 None:intergenic 55.0%
GCCCTTCTTGCAATTCGACG+AGG + chr1_3:62511195-62511214 Msa0131640:CDS 55.0%
GAGATCCAAGGCCTGTCATG+AGG + chr1_3:62512674-62512693 Msa0131640:CDS 55.0%
GTTTCCCTCATGACAGGCCT+TGG - chr1_3:62512682-62512701 None:intergenic 55.0%
!! GGATGGTGGGGATCCTGAAA+AGG + chr1_3:62512717-62512736 Msa0131640:CDS 55.0%
! GGGGGAGAGTAAGGTAGTGG+TGG - chr1_3:62511019-62511038 None:intergenic 60.0%
GGAGGGGGAGAGTAAGGTAG+TGG - chr1_3:62511022-62511041 None:intergenic 60.0%
! GTTGTTATTGCCGCTGCCGC+CGG - chr1_3:62511166-62511185 None:intergenic 60.0%
! GGTGATGGCGTCCCAGATGC+CGG - chr1_3:62511145-62511164 None:intergenic 65.0%
! GGCATCTGGGACGCCATCAC+CGG + chr1_3:62511144-62511163 Msa0131640:CDS 65.0%
! ATCTGGGACGCCATCACCGG+CGG + chr1_3:62511147-62511166 Msa0131640:CDS 65.0%
ATTGCCGCTGCCGCCGGTGA+TGG - chr1_3:62511160-62511179 None:intergenic 70.0%
GACGCCATCACCGGCGGCAG+CGG + chr1_3:62511153-62511172 Msa0131640:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62510901 62513806 62510901 ID=Msa0131640;Name=Msa0131640
chr1_3 mRNA 62510901 62513806 62510901 ID=Msa0131640-mRNA-1;Parent=Msa0131640;Name=Msa0131640-mRNA-1;_AED=0.21;_eAED=0.21;_QI=56|0.85|0.87|1|0.85|0.75|8|251|246
chr1_3 exon 62510901 62510948 62510901 ID=Msa0131640-mRNA-1:exon:20830;Parent=Msa0131640-mRNA-1
chr1_3 exon 62510974 62511236 62510974 ID=Msa0131640-mRNA-1:exon:20831;Parent=Msa0131640-mRNA-1
chr1_3 exon 62511310 62511380 62511310 ID=Msa0131640-mRNA-1:exon:20832;Parent=Msa0131640-mRNA-1
chr1_3 exon 62512443 62512575 62512443 ID=Msa0131640-mRNA-1:exon:20833;Parent=Msa0131640-mRNA-1
chr1_3 exon 62512667 62512738 62512667 ID=Msa0131640-mRNA-1:exon:20834;Parent=Msa0131640-mRNA-1
chr1_3 exon 62512880 62512960 62512880 ID=Msa0131640-mRNA-1:exon:20835;Parent=Msa0131640-mRNA-1
chr1_3 exon 62513334 62513395 62513334 ID=Msa0131640-mRNA-1:exon:20836;Parent=Msa0131640-mRNA-1
chr1_3 exon 62513489 62513806 62513489 ID=Msa0131640-mRNA-1:exon:20837;Parent=Msa0131640-mRNA-1
chr1_3 five_prime_UTR 62510901 62510948 62510901 ID=Msa0131640-mRNA-1:five_prime_utr;Parent=Msa0131640-mRNA-1
chr1_3 five_prime_UTR 62510974 62510981 62510974 ID=Msa0131640-mRNA-1:five_prime_utr;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62510982 62511236 62510982 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62511310 62511380 62511310 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62512443 62512575 62512443 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62512667 62512738 62512667 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62512880 62512960 62512880 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62513334 62513395 62513334 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 CDS 62513489 62513555 62513489 ID=Msa0131640-mRNA-1:cds;Parent=Msa0131640-mRNA-1
chr1_3 three_prime_UTR 62513556 62513806 62513556 ID=Msa0131640-mRNA-1:three_prime_utr;Parent=Msa0131640-mRNA-1
Gene Sequence

>Msa0131640

ATGTCCATGCCAATTATCCACAACCTTAAACCCACCACCACTACCTTACTCTCCCCCTCCCTTTCTTCACCATTCCCATCATCATCATCATCTTTCAAACCACCCATCTTTTGCTCCAATCCTTCAAATCTCTCTCGAAGACTCTTCCTTCCTTCTGTTTCCGGCATCTGGGACGCCATCACCGGCGGCAGCGGCAATAACAACACCAATGAAGCCCTTCTTGCAATTCGACGAGGAATGTCTCTCTTCAGACAGGGTGATGTTTTGGGGTCTGTTGTGGAGTTTGATAAAGCAATTGAATTGGATCCTCGTCAAAAGGCGTGTAGATTTGAAGAAGGAGCTGAGCAGTTTCGGTTAGACGTTGCTCAAAATCCAAATGATACGGAAGAGTCCATATGGTGTTTTCTGTGTGAAGCTCAACTATATGGTGTGGATGAAGCAAGAAAGCGATATCTTGAGGTTGGCAGAGATCCAAGGCCTGTCATGAGGGAAACATATAACATGTTTAAGGATGGTGGGGATCCTGAAAAGCTTGTAGGTGCATTCTCCAATAGCAGAGAAAGCGATTATTTTTATGCTTCGCTGTATGCTGGGCTTTATTACGAATCTCAGAATGAAAATGATGCTGCAAAAGTTCATATAGTTGCTGCTTGCAAATCTCCTTATGGGCAAAGGTCTGATGATTATATGGCTTCTCTTTCCAAGGTTCACTGTCTTTGCCGAAATTGGAACTTCAGCTGA

Protein sequence

>Msa0131640

MSMPIIHNLKPTTTTLLSPSLSSPFPSSSSSFKPPIFCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGDVLGSVVEFDKAIELDPRQKACRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNENDAAKVHIVAACKSPYGQRSDDYMASLSKVHCLCRNWNFS*