AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600940 MtrunA17_Chr4g0026061 98.561 139 1 1 1 139 1 138 1.19e-96 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600940 AT1G08380.1 75.373 134 26 3 8 137 10 140 1.80e-66 198

Find 63 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGCTGTAATCTATGATTT+TGG 0.200826 4_2:+43081186 None:intergenic
GATTTCAATGTGATTGGATT+TGG 0.225162 4_2:-43080593 Msa0600940:CDS
CTGTTCATCTCTCTCACTTT+TGG 0.231594 4_2:-43079169 Msa0600940:CDS
TCCTTCCTTTGAAACCAATT+TGG 0.248618 4_2:+43079146 None:intergenic
TAGAAAACAACAATAATAAT+TGG 0.259562 4_2:-43081272 Msa0600940:five_prime_UTR
ATCATAGATTACAGCTAAAA+TGG 0.260177 4_2:-43081181 Msa0600940:exon
CTGCTCTTACTTCACCCTTC+TGG 0.272395 4_2:-43080460 Msa0600940:intron
AAATAAAATAAGATTGGGTT+TGG 0.314112 4_2:+43081315 None:intergenic
CAAGGCTGAAAGTAATATAA+AGG 0.317364 4_2:+43078995 None:intergenic
ATGGCTGATCTGTTGGCACC+TGG 0.325103 4_2:-43079194 Msa0600940:CDS
GTGATTGGATTTGGGTTGAT+AGG 0.341850 4_2:-43080584 Msa0600940:CDS
CCTTCCAAATAAAATAAGAT+TGG 0.349799 4_2:+43081309 None:intergenic
ATTTCAATGTGATTGGATTT+GGG 0.350561 4_2:-43080592 Msa0600940:CDS
AGGAGGGATTTCAATGTGAT+TGG 0.352292 4_2:-43080599 Msa0600940:CDS
GAAGTAAGAGCAGGAGGAGT+AGG 0.358016 4_2:+43080470 None:intergenic
TTGGATTTGGGTTGATAGGT+TGG 0.379649 4_2:-43080580 Msa0600940:CDS
CCCTCCTCAGCCAATCCCTT+TGG 0.395602 4_2:+43080615 None:intergenic
CTTCCAAATAAAATAAGATT+GGG 0.407788 4_2:+43081310 None:intergenic
TCTATAGCTGGTATGCTTGA+TGG 0.430936 4_2:+43080551 None:intergenic
AAGTAAGAGCAGGAGGAGTA+GGG 0.437703 4_2:+43080471 None:intergenic
TGGCTGATCTGTTGGCACCT+GGG 0.454791 4_2:-43079193 Msa0600940:CDS
GCCAAATTGGTTTCAAAGGA+AGG 0.457172 4_2:-43079147 Msa0600940:CDS
AAGGCTGAAAGTAATATAAA+GGG 0.460895 4_2:+43078996 None:intergenic
ATTTGGGTTGATAGGTTGGT+TGG 0.470446 4_2:-43080576 Msa0600940:CDS
ACAACCTTTCCAACCGTCCT+AGG 0.470976 4_2:-43081153 Msa0600940:CDS
CAAGCTATGGCACTTGGAAA+TGG 0.471234 4_2:-43080979 Msa0600940:CDS
AGTGCCATAGCTTGCTTCAA+AGG 0.477357 4_2:+43080988 None:intergenic
TTGAAGCAAGCTATGGCACT+TGG 0.478115 4_2:-43080985 Msa0600940:CDS
GGCACCTTGTCTCTCGTACT+AGG 0.479751 4_2:-43078922 Msa0600940:three_prime_UTR
GGCTGATCTGTTGGCACCTG+GGG 0.482909 4_2:-43079192 Msa0600940:CDS
TCAAGCATACCAGCTATAGA+TGG 0.485882 4_2:-43080548 Msa0600940:CDS
TTTGGCCAAATTGGTTTCAA+AGG 0.491678 4_2:-43079151 Msa0600940:CDS
TGAAACCACAAGTGATTGCT+AGG 0.500689 4_2:-43081014 Msa0600940:CDS
TCCAAAGGGATTGGCTGAGG+AGG 0.519342 4_2:-43080616 Msa0600940:CDS
GGTGCATCACGTCTCACCTC+AGG 0.521677 4_2:-43081123 Msa0600940:intron
GCAGGTTATGGCTGATCTGT+TGG 0.521700 4_2:-43079201 Msa0600940:intron
TGAGAGAGATGAACAGCCCC+AGG 0.530883 4_2:+43079176 None:intergenic
ACTCATGGTAGTAGATTACA+AGG 0.536566 4_2:+43078977 None:intergenic
CCAACCGTCCTAGGAATGGC+TGG 0.539875 4_2:-43081144 Msa0600940:CDS
CCAGCCATTCCTAGGACGGT+TGG 0.541005 4_2:+43081144 None:intergenic
GTGATGCACCAGCCATTCCT+AGG 0.542585 4_2:+43081136 None:intergenic
ATAGATGGTAAAAGTCTGAC+TGG 0.543316 4_2:-43080533 Msa0600940:CDS
ATAGTAGCTTCCAAAGGGAT+TGG 0.543759 4_2:-43080625 Msa0600940:intron
GCTATGGCACTTGGAAATGG+TGG 0.550754 4_2:-43080976 Msa0600940:CDS
CCAAAGGGATTGGCTGAGGA+GGG 0.551644 4_2:-43080615 Msa0600940:CDS
GGATTCCTAGCAATCACTTG+TGG 0.557103 4_2:+43081009 None:intergenic
CAGAAGGGTGAAGTAAGAGC+AGG 0.557629 4_2:+43080461 None:intergenic
CTTTCCAACCGTCCTAGGAA+TGG 0.566203 4_2:-43081148 Msa0600940:CDS
GGTGTATAGTAGCTTCCAAA+GGG 0.571319 4_2:-43080630 Msa0600940:intron
CATTCCTAGGACGGTTGGAA+AGG 0.571757 4_2:+43081149 None:intergenic
AAAGAAGCTTGTAGAACACT+TGG 0.572312 4_2:-43078943 Msa0600940:three_prime_UTR
GAATCCTTTGAAGCAAGCTA+TGG 0.575832 4_2:-43080992 Msa0600940:CDS
GCTTCCAAAGGGATTGGCTG+AGG 0.582802 4_2:-43080619 Msa0600940:CDS
TGGTGTATAGTAGCTTCCAA+AGG 0.596452 4_2:-43080631 Msa0600940:intron
TATTACTATGAATTAAAGTG+AGG 0.597027 4_2:-43079073 Msa0600940:three_prime_UTR
CTATGGCACTTGGAAATGGT+GGG 0.605091 4_2:-43080975 Msa0600940:CDS
AAGGGTGAAGTAAGAGCAGG+AGG 0.608022 4_2:+43080464 None:intergenic
TGCACCAGCCATTCCTAGGA+CGG 0.612860 4_2:+43081140 None:intergenic
CAGATATGTGTGCAAAGTAG+TGG 0.627867 4_2:+43081235 None:intergenic
GAAATGGTGGGAGAGTTACA+TGG 0.656018 4_2:-43080963 Msa0600940:intron
TGGTTTCAAAGGAAGGACTG+AGG 0.666404 4_2:-43079140 Msa0600940:CDS
ATGAAAATGACTAACCAGAA+GGG 0.671062 4_2:+43080446 None:intergenic
ATATGTGTGCAAAGTAGTGG+TGG 0.698145 4_2:+43081238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTATTAAT+GGG - chr4_2:43080563-43080582 Msa0600940:CDS 0.0%
!!! TTCATTTTATTTATTTAAGT+CGG - chr4_2:43079745-43079764 Msa0600940:intron 10.0%
!! TGATCAAATATATAAATTAT+TGG - chr4_2:43079833-43079852 Msa0600940:intron 10.0%
!!! TTTTATTTTTATTTTTATGG+TGG + chr4_2:43080343-43080362 None:intergenic 10.0%
!!! TTGCATTTAAATATATTTTT+TGG - chr4_2:43080890-43080909 Msa0600940:intron 10.0%
!! TAGAAAACAACAATAATAAT+TGG - chr4_2:43078875-43078894 Msa0600940:three_prime_UTR 15.0%
!!! ATTGTAATTAATTTGTTTGT+AGG - chr4_2:43079105-43079124 Msa0600940:exon 15.0%
!!! TCCATATGAATATTTATTTT+CGG - chr4_2:43079262-43079281 Msa0600940:intron 15.0%
!!! TATGATTATTTTCATTAACT+TGG + chr4_2:43080025-43080044 None:intergenic 15.0%
!!! TTTTTTTTTCTAACAATCTA+TGG + chr4_2:43080485-43080504 None:intergenic 15.0%
!! AAATTAAATCCATAAAGTTT+AGG - chr4_2:43080502-43080521 Msa0600940:CDS 15.0%
!! AGTAAAATAAAGAAAAGAAA+AGG - chr4_2:43080739-43080758 Msa0600940:intron 15.0%
!!! CTTTTTTTTTTTTTAACTCA+TGG + chr4_2:43081188-43081207 None:intergenic 15.0%
!! AAATAAAATAAGATTGGGTT+TGG + chr4_2:43078835-43078854 None:intergenic 20.0%
!!! AAACCCAATCTTATTTTATT+TGG - chr4_2:43078834-43078853 Msa0600940:three_prime_UTR 20.0%
!! CTTCCAAATAAAATAAGATT+GGG + chr4_2:43078840-43078859 None:intergenic 20.0%
!!! GGTAATTTTTACTATAAGAT+TGG - chr4_2:43079205-43079224 Msa0600940:intron 20.0%
!!! CTATAAGATTGGTTTTTATA+TGG - chr4_2:43079216-43079235 Msa0600940:intron 20.0%
!!! CATTATTTTGTGAATTGTTA+TGG - chr4_2:43079479-43079498 Msa0600940:intron 20.0%
!!! TAAATGGGGTATTAAAAAAT+TGG + chr4_2:43079961-43079980 None:intergenic 20.0%
!! AAAGTAATGAAAATATGAAG+TGG - chr4_2:43080097-43080116 Msa0600940:intron 20.0%
!!! ATTTTTATTTTTATGGTGGT+CGG + chr4_2:43080339-43080358 None:intergenic 20.0%
!! AAATAAATTGTATCCATTGT+TGG + chr4_2:43080435-43080454 None:intergenic 20.0%
!!! ACAATGGATACAATTTATTT+TGG - chr4_2:43080435-43080454 Msa0600940:intron 20.0%
!! TGCTAATGAGAAATTATAAA+TGG - chr4_2:43080608-43080627 Msa0600940:CDS 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - chr4_2:43080634-43080653 Msa0600940:intron 20.0%
!! TATTACTATGAATTAAAGTG+AGG - chr4_2:43081074-43081093 Msa0600940:intron 20.0%
!! AAATTGCAAAACAAAAAGTT+GGG + chr4_2:43081322-43081341 None:intergenic 20.0%
!! AAAATTGCAAAACAAAAAGT+TGG + chr4_2:43081323-43081342 None:intergenic 20.0%
! CCTTCCAAATAAAATAAGAT+TGG + chr4_2:43078841-43078860 None:intergenic 25.0%
!!! CCAATCTTATTTTATTTGGA+AGG - chr4_2:43078838-43078857 Msa0600940:three_prime_UTR 25.0%
!! TTAGCTGTAATCTATGATTT+TGG + chr4_2:43078964-43078983 None:intergenic 25.0%
! ATCATAGATTACAGCTAAAA+TGG - chr4_2:43078966-43078985 Msa0600940:three_prime_UTR 25.0%
! GCCGAAAATAAATATTCATA+TGG + chr4_2:43079266-43079285 None:intergenic 25.0%
! TCATATTTCACGTGATTAAA+CGG + chr4_2:43079368-43079387 None:intergenic 25.0%
! ATTTCAATGTGATTGGATTT+GGG - chr4_2:43079555-43079574 Msa0600940:intron 25.0%
! ATATTTGATCATTCCTTACA+TGG + chr4_2:43079824-43079843 None:intergenic 25.0%
! TATAAATTATTGGCATCTAG+AGG - chr4_2:43079843-43079862 Msa0600940:intron 25.0%
! TCTAACAGACAATTAAAACA+AGG - chr4_2:43079898-43079917 Msa0600940:intron 25.0%
! AAAGAACTTGTGACTTAAAT+GGG + chr4_2:43079976-43079995 None:intergenic 25.0%
! TAAAGAACTTGTGACTTAAA+TGG + chr4_2:43079977-43079996 None:intergenic 25.0%
! TAATGAAAATATGAAGTGGA+AGG - chr4_2:43080101-43080120 Msa0600940:intron 25.0%
!!! TTTTTATTTTTATGGTGGTC+GGG + chr4_2:43080338-43080357 None:intergenic 25.0%
!! GTAAAATTTTACACCAACAA+TGG - chr4_2:43080419-43080438 Msa0600940:intron 25.0%
! TTATTAGCACCTAAACTTTA+TGG + chr4_2:43080514-43080533 None:intergenic 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + chr4_2:43080709-43080728 None:intergenic 25.0%
! AAGGCTGAAAGTAATATAAA+GGG + chr4_2:43081154-43081173 None:intergenic 25.0%
! AATTGCAAAACAAAAAGTTG+GGG + chr4_2:43081321-43081340 None:intergenic 25.0%
!!! TTCGGCTAGTTTTATAGTAT+AGG - chr4_2:43079280-43079299 Msa0600940:intron 30.0%
TGAATTGTTATGGCATGTTA+TGG - chr4_2:43079489-43079508 Msa0600940:intron 30.0%
GATTTCAATGTGATTGGATT+TGG - chr4_2:43079554-43079573 Msa0600940:intron 30.0%
ATGAAAATGACTAACCAGAA+GGG + chr4_2:43079704-43079723 None:intergenic 30.0%
ATCAATCCTACTGTCTAAAT+CGG - chr4_2:43079791-43079810 Msa0600940:intron 30.0%
! TGGGGTATTAAAAAATTGGA+AGG + chr4_2:43079957-43079976 None:intergenic 30.0%
AAGAACTTGTGACTTAAATG+GGG + chr4_2:43079975-43079994 None:intergenic 30.0%
!!! TTTTATTTTTATGGTGGTCG+GGG + chr4_2:43080337-43080356 None:intergenic 30.0%
GTCGGTAATTTCTATCAAAA+CGG + chr4_2:43080832-43080851 None:intergenic 30.0%
!! GTTTTGATAGAAATTACCGA+CGG - chr4_2:43080831-43080850 Msa0600940:intron 30.0%
TCAGTTTATATTACATCCGT+CGG + chr4_2:43080850-43080869 None:intergenic 30.0%
CAAGGCTGAAAGTAATATAA+AGG + chr4_2:43081155-43081174 None:intergenic 30.0%
! GCTGTAATCTATGATTTTGG+TGG + chr4_2:43078961-43078980 None:intergenic 35.0%
GTTAATGATCATGATACCTG+AGG + chr4_2:43079043-43079062 None:intergenic 35.0%
TTATGGCATGTTATGGCATA+TGG - chr4_2:43079496-43079515 Msa0600940:intron 35.0%
! AGACTTTTACCATCTATAGC+TGG + chr4_2:43079611-43079630 None:intergenic 35.0%
ATAGATGGTAAAAGTCTGAC+TGG - chr4_2:43079614-43079633 Msa0600940:intron 35.0%
!! GGACTTTTCTTTGATAGCAT+TGG - chr4_2:43079635-43079654 Msa0600940:intron 35.0%
GATGAAAATGACTAACCAGA+AGG + chr4_2:43079705-43079724 None:intergenic 35.0%
TTTGTTCCGATTTAGACAGT+AGG + chr4_2:43079800-43079819 None:intergenic 35.0%
AATCGGAACAAAACCATGTA+AGG - chr4_2:43079808-43079827 Msa0600940:intron 35.0%
! AAGGAATCAGTTAGAGGTAT+TGG - chr4_2:43080120-43080139 Msa0600940:intron 35.0%
!! AGGAATCAGTTAGAGGTATT+GGG - chr4_2:43080121-43080140 Msa0600940:intron 35.0%
GTGAGCTTGTCTTAGTAAAA+AGG - chr4_2:43080148-43080167 Msa0600940:intron 35.0%
TTTCTATCAAAACGGTTCCA+TGG + chr4_2:43080824-43080843 None:intergenic 35.0%
TCAAACATGATGAATTGAGC+AGG - chr4_2:43080928-43080947 Msa0600940:intron 35.0%
ATGATGAATTGAGCAGGTTA+TGG - chr4_2:43080934-43080953 Msa0600940:intron 35.0%
! TTTGGCCAAATTGGTTTCAA+AGG - chr4_2:43080996-43081015 Msa0600940:CDS 35.0%
!! TCCTTCCTTTGAAACCAATT+TGG + chr4_2:43081004-43081023 None:intergenic 35.0%
ACTCATGGTAGTAGATTACA+AGG + chr4_2:43081173-43081192 None:intergenic 35.0%
AAAGAAGCTTGTAGAACACT+TGG - chr4_2:43081204-43081223 Msa0600940:five_prime_UTR 35.0%
TCTCTCGTACTAGGAAAAAT+TGG - chr4_2:43081234-43081253 Msa0600940:five_prime_UTR 35.0%
! CAAAGTAGTGGTGGTTTTTG+TGG + chr4_2:43078903-43078922 None:intergenic 40.0%
ATATGTGTGCAAAGTAGTGG+TGG + chr4_2:43078912-43078931 None:intergenic 40.0%
CAGATATGTGTGCAAAGTAG+TGG + chr4_2:43078915-43078934 None:intergenic 40.0%
TGAAACCACAAGTGATTGCT+AGG - chr4_2:43079133-43079152 Msa0600940:CDS 40.0%
!! GAATCCTTTGAAGCAAGCTA+TGG - chr4_2:43079155-43079174 Msa0600940:CDS 40.0%
TGGTGTATAGTAGCTTCCAA+AGG - chr4_2:43079516-43079535 Msa0600940:intron 40.0%
GGTGTATAGTAGCTTCCAAA+GGG - chr4_2:43079517-43079536 Msa0600940:intron 40.0%
ATAGTAGCTTCCAAAGGGAT+TGG - chr4_2:43079522-43079541 Msa0600940:intron 40.0%
AGGAGGGATTTCAATGTGAT+TGG - chr4_2:43079548-43079567 Msa0600940:intron 40.0%
!! GTGATTGGATTTGGGTTGAT+AGG - chr4_2:43079563-43079582 Msa0600940:intron 40.0%
!! TTGGATTTGGGTTGATAGGT+TGG - chr4_2:43079567-43079586 Msa0600940:intron 40.0%
!! ATTTGGGTTGATAGGTTGGT+TGG - chr4_2:43079571-43079590 Msa0600940:intron 40.0%
TCTATAGCTGGTATGCTTGA+TGG + chr4_2:43079599-43079618 None:intergenic 40.0%
TCAAGCATACCAGCTATAGA+TGG - chr4_2:43079599-43079618 Msa0600940:intron 40.0%
AAGTGGAAGGAATCAGTTAG+AGG - chr4_2:43080114-43080133 Msa0600940:intron 40.0%
! TGAGCTTATCTCAGTTGGTA+GGG - chr4_2:43080276-43080295 Msa0600940:intron 40.0%
! CTGTTCATCTCTCTCACTTT+TGG - chr4_2:43080978-43080997 Msa0600940:CDS 40.0%
!! TCTCTCACTTTTGGCCAAAT+TGG - chr4_2:43080987-43081006 Msa0600940:CDS 40.0%
! GCCAAATTGGTTTCAAAGGA+AGG - chr4_2:43081000-43081019 Msa0600940:CDS 40.0%
! TTTTCCTAGTACGAGAGACA+AGG + chr4_2:43081232-43081251 None:intergenic 40.0%
GGATTCCTAGCAATCACTTG+TGG + chr4_2:43079141-43079160 None:intergenic 45.0%
!! AGTGCCATAGCTTGCTTCAA+AGG + chr4_2:43079162-43079181 None:intergenic 45.0%
TTGAAGCAAGCTATGGCACT+TGG - chr4_2:43079162-43079181 Msa0600940:CDS 45.0%
CAAGCTATGGCACTTGGAAA+TGG - chr4_2:43079168-43079187 Msa0600940:CDS 45.0%
CTATGGCACTTGGAAATGGT+GGG - chr4_2:43079172-43079191 Msa0600940:CDS 45.0%
! GAAATGGTGGGAGAGTTACA+TGG - chr4_2:43079184-43079203 Msa0600940:CDS 45.0%
AAGTAAGAGCAGGAGGAGTA+GGG + chr4_2:43079679-43079698 None:intergenic 45.0%
CTTCGTGAGCTTATCTCAGT+TGG - chr4_2:43080271-43080290 Msa0600940:intron 45.0%
GTGAGCTTATCTCAGTTGGT+AGG - chr4_2:43080275-43080294 Msa0600940:intron 45.0%
AGTAACCCGAGTTCAAGTCT+CGG + chr4_2:43080770-43080789 None:intergenic 45.0%
AAAACGGTTCCATGGTCTAG+CGG + chr4_2:43080816-43080835 None:intergenic 45.0%
TGGTTTCAAAGGAAGGACTG+AGG - chr4_2:43081007-43081026 Msa0600940:CDS 45.0%
!!! TAGTTTTATTTTTATTTTTA+TGG + chr4_2:43080346-43080365 None:intergenic 5.0%
!!! CATTTTTTTTTTTTTATTAA+TGG - chr4_2:43080562-43080581 Msa0600940:CDS 5.0%
ACAACCTTTCCAACCGTCCT+AGG - chr4_2:43078994-43079013 Msa0600940:three_prime_UTR 50.0%
CATTCCTAGGACGGTTGGAA+AGG + chr4_2:43079001-43079020 None:intergenic 50.0%
CTTTCCAACCGTCCTAGGAA+TGG - chr4_2:43078999-43079018 Msa0600940:three_prime_UTR 50.0%
GCTATGGCACTTGGAAATGG+TGG - chr4_2:43079171-43079190 Msa0600940:CDS 50.0%
GAAGTAAGAGCAGGAGGAGT+AGG + chr4_2:43079680-43079699 None:intergenic 50.0%
AAGGGTGAAGTAAGAGCAGG+AGG + chr4_2:43079686-43079705 None:intergenic 50.0%
CAGAAGGGTGAAGTAAGAGC+AGG + chr4_2:43079689-43079708 None:intergenic 50.0%
CTGCTCTTACTTCACCCTTC+TGG - chr4_2:43079687-43079706 Msa0600940:intron 50.0%
GTTCCACCGAGACTTGAACT+CGG - chr4_2:43080761-43080780 Msa0600940:intron 50.0%
TTCCACCGAGACTTGAACTC+GGG - chr4_2:43080762-43080781 Msa0600940:intron 50.0%
GAGACTTGAACTCGGGTTAC+TGG - chr4_2:43080769-43080788 Msa0600940:intron 50.0%
TGGTCTAGCGGTTAGGACAT+TGG + chr4_2:43080804-43080823 None:intergenic 50.0%
ATGTCCTAACCGCTAGACCA+TGG - chr4_2:43080804-43080823 Msa0600940:intron 50.0%
GCAGGTTATGGCTGATCTGT+TGG - chr4_2:43080946-43080965 Msa0600940:intron 50.0%
TGCACCAGCCATTCCTAGGA+CGG + chr4_2:43079010-43079029 None:intergenic 55.0%
GTGATGCACCAGCCATTCCT+AGG + chr4_2:43079014-43079033 None:intergenic 55.0%
!! GCTTCCAAAGGGATTGGCTG+AGG - chr4_2:43079528-43079547 Msa0600940:intron 55.0%
!! TCCAAAGGGATTGGCTGAGG+AGG - chr4_2:43079531-43079550 Msa0600940:intron 55.0%
!! CCAAAGGGATTGGCTGAGGA+GGG - chr4_2:43079532-43079551 Msa0600940:intron 55.0%
AACCCGAGTTCAAGTCTCGG+TGG + chr4_2:43080767-43080786 None:intergenic 55.0%
GGTTCCATGGTCTAGCGGTT+AGG + chr4_2:43080811-43080830 None:intergenic 55.0%
ATGGCTGATCTGTTGGCACC+TGG - chr4_2:43080953-43080972 Msa0600940:intron 55.0%
TGGCTGATCTGTTGGCACCT+GGG - chr4_2:43080954-43080973 Msa0600940:intron 55.0%
TGAGAGAGATGAACAGCCCC+AGG + chr4_2:43080974-43080993 None:intergenic 55.0%
GGCACCTTGTCTCTCGTACT+AGG - chr4_2:43081225-43081244 Msa0600940:five_prime_UTR 55.0%
CCAGCCATTCCTAGGACGGT+TGG + chr4_2:43079006-43079025 None:intergenic 60.0%
CCAACCGTCCTAGGAATGGC+TGG - chr4_2:43079003-43079022 Msa0600940:three_prime_UTR 60.0%
GGTGCATCACGTCTCACCTC+AGG - chr4_2:43079024-43079043 Msa0600940:three_prime_UTR 60.0%
CCCTCCTCAGCCAATCCCTT+TGG + chr4_2:43079535-43079554 None:intergenic 60.0%
GGCTGATCTGTTGGCACCTG+GGG - chr4_2:43080955-43080974 Msa0600940:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 43078825 43081344 43078825 ID=Msa0600940;Name=Msa0600940
chr4_2 mRNA 43078825 43081344 43078825 ID=Msa0600940-mRNA-1;Parent=Msa0600940;Name=Msa0600940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=160|1|1|1|1|1|4|298|139
chr4_2 exon 43078825 43079219 43078825 ID=Msa0600940-mRNA-1:exon:9400;Parent=Msa0600940-mRNA-1
chr4_2 exon 43080461 43080643 43080461 ID=Msa0600940-mRNA-1:exon:9399;Parent=Msa0600940-mRNA-1
chr4_2 exon 43080964 43081042 43080964 ID=Msa0600940-mRNA-1:exon:9398;Parent=Msa0600940-mRNA-1
chr4_2 exon 43081124 43081344 43081124 ID=Msa0600940-mRNA-1:exon:9397;Parent=Msa0600940-mRNA-1
chr4_2 five_prime_UTR 43081185 43081344 43081185 ID=Msa0600940-mRNA-1:five_prime_utr;Parent=Msa0600940-mRNA-1
chr4_2 CDS 43081124 43081184 43081124 ID=Msa0600940-mRNA-1:cds;Parent=Msa0600940-mRNA-1
chr4_2 CDS 43080964 43081042 43080964 ID=Msa0600940-mRNA-1:cds;Parent=Msa0600940-mRNA-1
chr4_2 CDS 43080461 43080643 43080461 ID=Msa0600940-mRNA-1:cds;Parent=Msa0600940-mRNA-1
chr4_2 CDS 43079123 43079219 43079123 ID=Msa0600940-mRNA-1:cds;Parent=Msa0600940-mRNA-1
chr4_2 three_prime_UTR 43078825 43079122 43078825 ID=Msa0600940-mRNA-1:three_prime_utr;Parent=Msa0600940-mRNA-1
Gene Sequence

>Msa0600940

ATGGCAACAACAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACCTCAGGATTTGTGAAACCACAAGTGATTGCTAGGAATCCTTTGAAGCAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGTAGCTTCCAAAGGGATTGGCTGAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTCTGACTGGACTTTTCTTTGATAGCATTGGCACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATTGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

Protein sequence

>Msa0600940

MATTTFPTVLGMAGASRLTSGFVKPQVIARNPLKQAMALGNGGRVTCSFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLWLICWHLGLFISLTFGQIGFKGRTEDYFQK*