AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024900 MtrunA17_Chr1g0179231 97.248 218 3 1 1 215 1 218 1.40e-155 429
Msa0024900 MtrunA17_Chr1g0179681 35.099 151 85 6 32 175 87 231 1.38e-15 73.2
Msa0024900 MtrunA17_Chr3g0102841 31.056 161 88 4 58 212 61 204 1.50e-14 69.7
Msa0024900 MtrunA17_Chr7g0234801 33.588 131 78 3 46 175 5 127 9.53e-13 66.6
Msa0024900 MtrunA17_Chr8g0377771 35.669 157 80 9 58 208 23 164 2.29e-12 65.5
Msa0024900 MtrunA17_Chr7g0214751 29.208 202 117 6 26 210 43 235 5.22e-12 63.2
Msa0024900 MtrunA17_Chr8g0392891 32.031 128 72 4 56 174 117 238 8.58e-12 62.8
Msa0024900 MtrunA17_Chr5g0396231 35.537 121 45 3 93 213 413 500 9.35e-12 63.5
Msa0024900 MtrunA17_Chr8g0335211 33.594 128 68 5 76 201 100 212 1.37e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024900 AT4G19830.1 82.667 150 26 0 65 214 77 226 3.11e-90 265
Msa0024900 AT4G26555.2 33.750 160 86 5 52 210 18 158 1.77e-18 79.3
Msa0024900 AT4G26555.1 33.750 160 86 5 52 210 64 204 2.90e-18 80.1
Msa0024900 AT5G48570.1 34.000 150 65 4 65 213 37 153 1.49e-14 72.4
Msa0024900 AT3G10060.1 36.975 119 66 4 60 175 92 204 2.10e-14 70.1
Msa0024900 AT5G13410.1 32.903 155 91 5 61 210 105 251 7.94e-14 68.9
Msa0024900 AT3G25230.1 40.196 102 51 4 76 175 39 132 6.82e-13 67.4
Msa0024900 AT3G25230.2 40.196 102 51 4 76 175 39 132 7.40e-13 67.4
Msa0024900 AT5G05420.1 30.137 146 67 4 70 213 31 143 2.19e-12 62.8
Msa0024900 AT3G60370.1 31.298 131 57 4 84 214 129 226 1.03e-11 62.8
Msa0024900 AT3G60370.2 31.298 131 57 4 84 214 158 255 1.28e-11 62.8
Msa0024900 AT1G18170.1 34.884 129 73 4 56 175 104 230 1.43e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATGAAATTTATATTTA+AGG 0.075803 1_1:-47738356 Msa0024900:three_prime_UTR
AATGGTGAAGGTTCGACTTT+AGG 0.241757 1_1:-47738548 Msa0024900:CDS
TTCTCTGAACTCCCCAATTC+TGG 0.241954 1_1:-47739887 Msa0024900:CDS
TTTGTCTTTGTCCTTGGTTC+TGG 0.255718 1_1:-47739420 Msa0024900:CDS
AAAGTTTAAGTATCAATGTT+AGG 0.267247 1_1:-47740125 None:intergenic
TTGGAACTCCTTGTTGGTTC+AGG 0.280949 1_1:-47739851 Msa0024900:CDS
ATGGTGAAGGTTCGACTTTA+GGG 0.294637 1_1:-47738547 Msa0024900:CDS
GGCCTTAACACCACCAGAAT+TGG 0.297767 1_1:+47739874 None:intergenic
GTGTTTGTTTGTTTACTATA+TGG 0.326956 1_1:+47738463 None:intergenic
TTTATCAATTTGTGAATTGC+AGG 0.338768 1_1:-47738386 Msa0024900:three_prime_UTR
TTCTGGTGGTGTTAAGGCCT+TGG 0.355031 1_1:-47739870 Msa0024900:CDS
ATTCTCATCTTTGTGGTCAT+AGG 0.366810 1_1:+47739458 None:intergenic
GCCTTAACACCACCAGAATT+GGG 0.386314 1_1:+47739875 None:intergenic
CCCCAATTCTGGTGGTGTTA+AGG 0.386678 1_1:-47739876 Msa0024900:CDS
TGCTGTGTTCAGGTAATTGC+TGG 0.390936 1_1:-47738944 Msa0024900:intron
AGAAGGTGAAGGAGAAGAAT+AGG 0.395312 1_1:+47739931 None:intergenic
TTGTTTGTTTACTATATGGC+TGG 0.409883 1_1:+47738467 None:intergenic
CTTTGTCCTTGGTTCTGGTA+AGG 0.410071 1_1:-47739415 Msa0024900:intron
ACTTATATTTGATATTGAAC+TGG 0.414468 1_1:-47738522 Msa0024900:CDS
ATAATAAAATACTGTGTCCT+TGG 0.418797 1_1:-47740076 Msa0024900:CDS
GGTCTTCTTGTTATGTTACA+TGG 0.420319 1_1:+47740010 None:intergenic
GATCACCATTCTCATCTTTG+TGG 0.422175 1_1:+47739451 None:intergenic
AAGGCCTTGGAACTCCTTGT+TGG 0.425790 1_1:-47739857 Msa0024900:CDS
AGTTCAGAGAAATCTGCTAT+TGG 0.443056 1_1:+47739899 None:intergenic
AGGACAAAGACAAAAGGATT+AGG 0.454496 1_1:+47739429 None:intergenic
GAGATTAGAGACAGAGATAA+GGG 0.454626 1_1:+47739989 None:intergenic
AAAAGGATTCTTACATTAGG+TGG 0.461196 1_1:+47738824 None:intergenic
AAGGTTGAGATTCATTACTA+TGG 0.463418 1_1:-47739519 Msa0024900:CDS
GAAGAATAGGAAGGTGGAAG+AGG 0.466133 1_1:+47739944 None:intergenic
AAGTTTAAGTATCAATGTTA+GGG 0.469362 1_1:-47740124 None:intergenic
ATTCTTACATTAGGTGGGAT+AGG 0.474454 1_1:+47738830 None:intergenic
AATCCGACTCGACTTGCAAA+TGG 0.488064 1_1:-47738566 Msa0024900:CDS
GTCATCATACCTCCCTCACT+TGG 0.496708 1_1:-47738875 Msa0024900:CDS
AAAAGTTCTTTGACAGGCAG+AGG 0.497439 1_1:-47738607 Msa0024900:intron
ATTCACAAATTGATAAATGC+TGG 0.499046 1_1:+47738392 None:intergenic
GGAGATTAGAGACAGAGATA+AGG 0.501803 1_1:+47739988 None:intergenic
AAGTGAGAAGATTAAAGCAG+TGG 0.511771 1_1:+47739967 None:intergenic
AAATCGAGCAATATACTACC+TGG 0.512956 1_1:+47738330 None:intergenic
ATATTTGATATTGAACTGGT+TGG 0.533481 1_1:-47738518 Msa0024900:CDS
GAACCAAGGACAAAGACAAA+AGG 0.544303 1_1:+47739423 None:intergenic
TCAGGTGAAGTTCCTCAAGA+TGG 0.562507 1_1:-47739833 Msa0024900:CDS
AAAGGATTCTTACATTAGGT+GGG 0.568520 1_1:+47738825 None:intergenic
TCTGAACTCCCCAATTCTGG+TGG 0.572089 1_1:-47739884 Msa0024900:CDS
TATGACCACAAAGATGAGAA+TGG 0.579877 1_1:-47739456 Msa0024900:CDS
GAAGGAGAAGAATAGGAAGG+TGG 0.580002 1_1:+47739938 None:intergenic
GGTAGACTTGCAGCAAAACA+AGG 0.581972 1_1:-47739498 Msa0024900:CDS
GGTGAAGGAGAAGAATAGGA+AGG 0.585572 1_1:+47739935 None:intergenic
ACACACGTGTTGCACTTCCA+AGG 0.590396 1_1:+47740059 None:intergenic
TCACCATTTGCAAGTCGAGT+CGG 0.591167 1_1:+47738563 None:intergenic
ACTCGACTTGCAAATGGTGA+AGG 0.607106 1_1:-47738560 Msa0024900:CDS
GACTTGCAGCAAAACAAGGA+TGG 0.607232 1_1:-47739494 Msa0024900:CDS
TCATCATACCTCCCTCACTT+GGG 0.612306 1_1:-47738874 Msa0024900:CDS
TTCTGATACCCAAGTGAGGG+AGG 0.616633 1_1:+47738866 None:intergenic
TGAACCAACAAGGAGTTCCA+AGG 0.619826 1_1:+47739853 None:intergenic
TATACCTGGTCTCCATCTTG+AGG 0.629024 1_1:+47739821 None:intergenic
CCTTAACACCACCAGAATTG+GGG 0.629737 1_1:+47739876 None:intergenic
GCAGTGAGATCAATGAAAGT+AGG 0.636994 1_1:-47738911 Msa0024900:CDS
ATATTGAACTGGTTGGTCTG+AGG 0.637937 1_1:-47738511 Msa0024900:CDS
AATCGAGCAATATACTACCT+GGG 0.638861 1_1:+47738331 None:intergenic
AATTTATATTTAAGGAACCC+AGG 0.642409 1_1:-47738348 Msa0024900:three_prime_UTR
GTGAGATCAATGAAAGTAGG+TGG 0.643044 1_1:-47738908 Msa0024900:CDS
TGGGTATCAGAACACATCAC+AGG 0.647520 1_1:-47738855 Msa0024900:CDS
GAACTTCACCTGAACCAACA+AGG 0.650571 1_1:+47739843 None:intergenic
AGTTCCTCAAGATGGAGACC+AGG 0.651081 1_1:-47739825 Msa0024900:intron
AGCTTACCTTACCAGAACCA+AGG 0.667313 1_1:+47739409 None:intergenic
GGTAATTGCTGGAATTGATG+TGG 0.679818 1_1:-47738933 Msa0024900:CDS
GTGTTCTGATACCCAAGTGA+GGG 0.691969 1_1:+47738863 None:intergenic
TGTGTTCTGATACCCAAGTG+AGG 0.735364 1_1:+47738862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCAGAATTTATAGATA+TGG - chr1_1:47738708-47738727 Msa0024900:intron 15.0%
!! AAAACAAAACAAATTTATCA+TGG + chr1_1:47738741-47738760 None:intergenic 15.0%
!!! TTTGTTTTGTTTTATTTTGT+TGG - chr1_1:47738748-47738767 Msa0024900:intron 15.0%
!!! ATTTGTAGGTTTTTTTATTT+AGG - chr1_1:47738783-47738802 Msa0024900:intron 15.0%
!!! TTTGTAGGTTTTTTTATTTA+GGG - chr1_1:47738784-47738803 Msa0024900:intron 15.0%
!! AAAAATTTCAGACTTATATA+TGG - chr1_1:47739388-47739407 Msa0024900:intron 15.0%
!! AAATTCAGAATTTATAGATA+TGG - chr1_1:47738708-47738727 Msa0024900:intron 15.0%
!! AAAACAAAACAAATTTATCA+TGG + chr1_1:47738741-47738760 None:intergenic 15.0%
!!! TTTGTTTTGTTTTATTTTGT+TGG - chr1_1:47738748-47738767 Msa0024900:intron 15.0%
!!! ATTTGTAGGTTTTTTTATTT+AGG - chr1_1:47738783-47738802 Msa0024900:intron 15.0%
!!! TTTGTAGGTTTTTTTATTTA+GGG - chr1_1:47738784-47738803 Msa0024900:intron 15.0%
!! AAAAATTTCAGACTTATATA+TGG - chr1_1:47739388-47739407 Msa0024900:intron 15.0%
!! AAATTCTGAATTTAGCATAT+TGG + chr1_1:47738701-47738720 None:intergenic 20.0%
!!! TTATAGACAAATTAATGGAT+AGG - chr1_1:47738823-47738842 Msa0024900:intron 20.0%
!! AGTAAATGTTGTTATATTGA+AGG - chr1_1:47738903-47738922 Msa0024900:CDS 20.0%
!! TTGATTATAACCAGTAAATT+TGG - chr1_1:47739054-47739073 Msa0024900:intron 20.0%
!!! CAAACTTATTTTGATCATTT+GGG + chr1_1:47739221-47739240 None:intergenic 20.0%
!!! ACAAACTTATTTTGATCATT+TGG + chr1_1:47739222-47739241 None:intergenic 20.0%
!! AAAAAAAAAAGTTCTTTGAC+AGG - chr1_1:47739828-47739847 Msa0024900:CDS 20.0%
!! ACTTATATTTGATATTGAAC+TGG - chr1_1:47739919-47739938 Msa0024900:CDS 20.0%
!!! AAACACTTTCTTTTTTATGA+GGG - chr1_1:47739995-47740014 Msa0024900:CDS 20.0%
!! AAATTCTGAATTTAGCATAT+TGG + chr1_1:47738701-47738720 None:intergenic 20.0%
!!! TTATAGACAAATTAATGGAT+AGG - chr1_1:47738823-47738842 Msa0024900:intron 20.0%
!! AGTAAATGTTGTTATATTGA+AGG - chr1_1:47738903-47738922 Msa0024900:CDS 20.0%
!! TTGATTATAACCAGTAAATT+TGG - chr1_1:47739054-47739073 Msa0024900:intron 20.0%
!!! CAAACTTATTTTGATCATTT+GGG + chr1_1:47739221-47739240 None:intergenic 20.0%
!!! ACAAACTTATTTTGATCATT+TGG + chr1_1:47739222-47739241 None:intergenic 20.0%
!! AAAAAAAAAAGTTCTTTGAC+AGG - chr1_1:47739828-47739847 Msa0024900:CDS 20.0%
!! ACTTATATTTGATATTGAAC+TGG - chr1_1:47739919-47739938 Msa0024900:CDS 20.0%
!!! AAACACTTTCTTTTTTATGA+GGG - chr1_1:47739995-47740014 Msa0024900:CDS 20.0%
! ATAATAAAATACTGTGTCCT+TGG - chr1_1:47738365-47738384 Msa0024900:three_prime_UTR 25.0%
!!! TATTGGTTTCCATGATATAT+AGG + chr1_1:47738684-47738703 None:intergenic 25.0%
! GCATGTTATAGACAAATTAA+TGG - chr1_1:47738818-47738837 Msa0024900:intron 25.0%
! TATAACCAGTAAATTTGGTT+TGG - chr1_1:47739059-47739078 Msa0024900:intron 25.0%
!! TGAAATTTTTACTGTCCTTA+TGG + chr1_1:47739378-47739397 None:intergenic 25.0%
! CATAAAAGGATTCTTACATT+AGG + chr1_1:47739623-47739642 None:intergenic 25.0%
! ATGTAATTCTGGATCATAAA+AGG + chr1_1:47739637-47739656 None:intergenic 25.0%
! ATATTTGATATTGAACTGGT+TGG - chr1_1:47739923-47739942 Msa0024900:CDS 25.0%
! GTGTTTGTTTGTTTACTATA+TGG + chr1_1:47739981-47740000 None:intergenic 25.0%
!!! CAAACACTTTCTTTTTTATG+AGG - chr1_1:47739994-47740013 Msa0024900:CDS 25.0%
!!! AACACTTTCTTTTTTATGAG+GGG - chr1_1:47739996-47740015 Msa0024900:CDS 25.0%
! ATTCACAAATTGATAAATGC+TGG + chr1_1:47740052-47740071 None:intergenic 25.0%
! TTTATCAATTTGTGAATTGC+AGG - chr1_1:47740055-47740074 Msa0024900:CDS 25.0%
! AATTTATATTTAAGGAACCC+AGG - chr1_1:47740093-47740112 Msa0024900:exon 25.0%
! ATAATAAAATACTGTGTCCT+TGG - chr1_1:47738365-47738384 Msa0024900:three_prime_UTR 25.0%
!!! TATTGGTTTCCATGATATAT+AGG + chr1_1:47738684-47738703 None:intergenic 25.0%
! GCATGTTATAGACAAATTAA+TGG - chr1_1:47738818-47738837 Msa0024900:intron 25.0%
! TATAACCAGTAAATTTGGTT+TGG - chr1_1:47739059-47739078 Msa0024900:intron 25.0%
!! TGAAATTTTTACTGTCCTTA+TGG + chr1_1:47739378-47739397 None:intergenic 25.0%
! CATAAAAGGATTCTTACATT+AGG + chr1_1:47739623-47739642 None:intergenic 25.0%
! ATGTAATTCTGGATCATAAA+AGG + chr1_1:47739637-47739656 None:intergenic 25.0%
! ATATTTGATATTGAACTGGT+TGG - chr1_1:47739923-47739942 Msa0024900:CDS 25.0%
! GTGTTTGTTTGTTTACTATA+TGG + chr1_1:47739981-47740000 None:intergenic 25.0%
!!! CAAACACTTTCTTTTTTATG+AGG - chr1_1:47739994-47740013 Msa0024900:CDS 25.0%
!!! AACACTTTCTTTTTTATGAG+GGG - chr1_1:47739996-47740015 Msa0024900:CDS 25.0%
! ATTCACAAATTGATAAATGC+TGG + chr1_1:47740052-47740071 None:intergenic 25.0%
! TTTATCAATTTGTGAATTGC+AGG - chr1_1:47740055-47740074 Msa0024900:CDS 25.0%
! AATTTATATTTAAGGAACCC+AGG - chr1_1:47740093-47740112 Msa0024900:exon 25.0%
! TACATGGATATTTTGTGTGA+GGG + chr1_1:47738418-47738437 None:intergenic 30.0%
! TTACATGGATATTTTGTGTG+AGG + chr1_1:47738419-47738438 None:intergenic 30.0%
TTAAATGAGAGAACTATACC+TGG + chr1_1:47738637-47738656 None:intergenic 30.0%
CATGATATATAGGAGATTTG+AGG + chr1_1:47738674-47738693 None:intergenic 30.0%
CTCAAATCTCCTATATATCA+TGG - chr1_1:47738672-47738691 Msa0024900:intron 30.0%
! GACAAATTAATGGATAGGTA+AGG - chr1_1:47738828-47738847 Msa0024900:intron 30.0%
AAGGTTGAGATTCATTACTA+TGG - chr1_1:47738922-47738941 Msa0024900:CDS 30.0%
AAACACCAAACCAAATTTAC+TGG + chr1_1:47739067-47739086 None:intergenic 30.0%
!!! CTCTTGCAATTTTTTCCATA+AGG - chr1_1:47739360-47739379 Msa0024900:intron 30.0%
CAGACTTATATATGGATCTT+TGG - chr1_1:47739396-47739415 Msa0024900:intron 30.0%
CTTAGTATGCAACATGATAA+AGG + chr1_1:47739450-47739469 None:intergenic 30.0%
AGAAGTTAATCTTGTGAGAA+TGG - chr1_1:47739472-47739491 Msa0024900:CDS 30.0%
AAAGGATTCTTACATTAGGT+GGG + chr1_1:47739619-47739638 None:intergenic 30.0%
AAAAGGATTCTTACATTAGG+TGG + chr1_1:47739620-47739639 None:intergenic 30.0%
CAAACGTTACTATGTAATTC+TGG + chr1_1:47739648-47739667 None:intergenic 30.0%
TTGTTTGTTTACTATATGGC+TGG + chr1_1:47739977-47739996 None:intergenic 30.0%
! TACATGGATATTTTGTGTGA+GGG + chr1_1:47738418-47738437 None:intergenic 30.0%
! TTACATGGATATTTTGTGTG+AGG + chr1_1:47738419-47738438 None:intergenic 30.0%
TTAAATGAGAGAACTATACC+TGG + chr1_1:47738637-47738656 None:intergenic 30.0%
CATGATATATAGGAGATTTG+AGG + chr1_1:47738674-47738693 None:intergenic 30.0%
CTCAAATCTCCTATATATCA+TGG - chr1_1:47738672-47738691 Msa0024900:intron 30.0%
! GACAAATTAATGGATAGGTA+AGG - chr1_1:47738828-47738847 Msa0024900:intron 30.0%
AAGGTTGAGATTCATTACTA+TGG - chr1_1:47738922-47738941 Msa0024900:CDS 30.0%
AAACACCAAACCAAATTTAC+TGG + chr1_1:47739067-47739086 None:intergenic 30.0%
!!! CTCTTGCAATTTTTTCCATA+AGG - chr1_1:47739360-47739379 Msa0024900:intron 30.0%
CAGACTTATATATGGATCTT+TGG - chr1_1:47739396-47739415 Msa0024900:intron 30.0%
CTTAGTATGCAACATGATAA+AGG + chr1_1:47739450-47739469 None:intergenic 30.0%
AGAAGTTAATCTTGTGAGAA+TGG - chr1_1:47739472-47739491 Msa0024900:CDS 30.0%
AAAGGATTCTTACATTAGGT+GGG + chr1_1:47739619-47739638 None:intergenic 30.0%
AAAAGGATTCTTACATTAGG+TGG + chr1_1:47739620-47739639 None:intergenic 30.0%
CAAACGTTACTATGTAATTC+TGG + chr1_1:47739648-47739667 None:intergenic 30.0%
TTGTTTGTTTACTATATGGC+TGG + chr1_1:47739977-47739996 None:intergenic 30.0%
! GGTCTTCTTGTTATGTTACA+TGG + chr1_1:47738434-47738453 None:intergenic 35.0%
GAGATTAGAGACAGAGATAA+GGG + chr1_1:47738455-47738474 None:intergenic 35.0%
AAGTGAGAAGATTAAAGCAG+TGG + chr1_1:47738477-47738496 None:intergenic 35.0%
AGTTCAGAGAAATCTGCTAT+TGG + chr1_1:47738545-47738564 None:intergenic 35.0%
GGTAGAGTATGAGAATTTGT+AGG - chr1_1:47738769-47738788 Msa0024900:intron 35.0%
ATTCTCATCTTTGTGGTCAT+AGG + chr1_1:47738986-47739005 None:intergenic 35.0%
TATGACCACAAAGATGAGAA+TGG - chr1_1:47738985-47739004 Msa0024900:intron 35.0%
AGGACAAAGACAAAAGGATT+AGG + chr1_1:47739015-47739034 None:intergenic 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG - chr1_1:47739015-47739034 Msa0024900:intron 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG + chr1_1:47739295-47739314 None:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG - chr1_1:47739303-47739322 Msa0024900:intron 35.0%
! ATGCAACATGATAAAGGCAT+AGG + chr1_1:47739444-47739463 None:intergenic 35.0%
ATTCTTACATTAGGTGGGAT+AGG + chr1_1:47739614-47739633 None:intergenic 35.0%
AAGTCGAGTCGGATTAAAAA+TGG + chr1_1:47739870-47739889 None:intergenic 35.0%
!!! ACTTTCTTTTTTATGAGGGG+TGG - chr1_1:47739999-47740018 Msa0024900:CDS 35.0%
AATCGAGCAATATACTACCT+GGG + chr1_1:47740113-47740132 None:intergenic 35.0%
AAATCGAGCAATATACTACC+TGG + chr1_1:47740114-47740133 None:intergenic 35.0%
! GGTCTTCTTGTTATGTTACA+TGG + chr1_1:47738434-47738453 None:intergenic 35.0%
GAGATTAGAGACAGAGATAA+GGG + chr1_1:47738455-47738474 None:intergenic 35.0%
AAGTGAGAAGATTAAAGCAG+TGG + chr1_1:47738477-47738496 None:intergenic 35.0%
AGTTCAGAGAAATCTGCTAT+TGG + chr1_1:47738545-47738564 None:intergenic 35.0%
GGTAGAGTATGAGAATTTGT+AGG - chr1_1:47738769-47738788 Msa0024900:intron 35.0%
ATTCTCATCTTTGTGGTCAT+AGG + chr1_1:47738986-47739005 None:intergenic 35.0%
TATGACCACAAAGATGAGAA+TGG - chr1_1:47738985-47739004 Msa0024900:intron 35.0%
AGGACAAAGACAAAAGGATT+AGG + chr1_1:47739015-47739034 None:intergenic 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG - chr1_1:47739015-47739034 Msa0024900:intron 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG + chr1_1:47739295-47739314 None:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG - chr1_1:47739303-47739322 Msa0024900:intron 35.0%
! ATGCAACATGATAAAGGCAT+AGG + chr1_1:47739444-47739463 None:intergenic 35.0%
ATTCTTACATTAGGTGGGAT+AGG + chr1_1:47739614-47739633 None:intergenic 35.0%
AAGTCGAGTCGGATTAAAAA+TGG + chr1_1:47739870-47739889 None:intergenic 35.0%
!!! ACTTTCTTTTTTATGAGGGG+TGG - chr1_1:47739999-47740018 Msa0024900:CDS 35.0%
AATCGAGCAATATACTACCT+GGG + chr1_1:47740113-47740132 None:intergenic 35.0%
AAATCGAGCAATATACTACC+TGG + chr1_1:47740114-47740133 None:intergenic 35.0%
! ATATTTTGTGTGAGGGAGAG+TGG + chr1_1:47738411-47738430 None:intergenic 40.0%
GGAGATTAGAGACAGAGATA+AGG + chr1_1:47738456-47738475 None:intergenic 40.0%
AGAAGGTGAAGGAGAAGAAT+AGG + chr1_1:47738513-47738532 None:intergenic 40.0%
!!! GCTATTGGACGTTTTGAAGA+AGG + chr1_1:47738530-47738549 None:intergenic 40.0%
GATCACCATTCTCATCTTTG+TGG + chr1_1:47738993-47739012 None:intergenic 40.0%
GAACCAAGGACAAAGACAAA+AGG + chr1_1:47739021-47739040 None:intergenic 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG - chr1_1:47739021-47739040 Msa0024900:intron 40.0%
GGTAATTGCTGGAATTGATG+TGG - chr1_1:47739508-47739527 Msa0024900:CDS 40.0%
GCAGTGAGATCAATGAAAGT+AGG - chr1_1:47739530-47739549 Msa0024900:intron 40.0%
GTGAGATCAATGAAAGTAGG+TGG - chr1_1:47739533-47739552 Msa0024900:intron 40.0%
AAAAGTTCTTTGACAGGCAG+AGG - chr1_1:47739834-47739853 Msa0024900:CDS 40.0%
AATGGTGAAGGTTCGACTTT+AGG - chr1_1:47739893-47739912 Msa0024900:CDS 40.0%
ATGGTGAAGGTTCGACTTTA+GGG - chr1_1:47739894-47739913 Msa0024900:CDS 40.0%
!! ATATTGAACTGGTTGGTCTG+AGG - chr1_1:47739930-47739949 Msa0024900:CDS 40.0%
! ATATTTTGTGTGAGGGAGAG+TGG + chr1_1:47738411-47738430 None:intergenic 40.0%
GGAGATTAGAGACAGAGATA+AGG + chr1_1:47738456-47738475 None:intergenic 40.0%
AGAAGGTGAAGGAGAAGAAT+AGG + chr1_1:47738513-47738532 None:intergenic 40.0%
!!! GCTATTGGACGTTTTGAAGA+AGG + chr1_1:47738530-47738549 None:intergenic 40.0%
GATCACCATTCTCATCTTTG+TGG + chr1_1:47738993-47739012 None:intergenic 40.0%
GAACCAAGGACAAAGACAAA+AGG + chr1_1:47739021-47739040 None:intergenic 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG - chr1_1:47739021-47739040 Msa0024900:intron 40.0%
GGTAATTGCTGGAATTGATG+TGG - chr1_1:47739508-47739527 Msa0024900:CDS 40.0%
GCAGTGAGATCAATGAAAGT+AGG - chr1_1:47739530-47739549 Msa0024900:intron 40.0%
GTGAGATCAATGAAAGTAGG+TGG - chr1_1:47739533-47739552 Msa0024900:intron 40.0%
AAAAGTTCTTTGACAGGCAG+AGG - chr1_1:47739834-47739853 Msa0024900:CDS 40.0%
AATGGTGAAGGTTCGACTTT+AGG - chr1_1:47739893-47739912 Msa0024900:CDS 40.0%
ATGGTGAAGGTTCGACTTTA+GGG - chr1_1:47739894-47739913 Msa0024900:CDS 40.0%
!! ATATTGAACTGGTTGGTCTG+AGG - chr1_1:47739930-47739949 Msa0024900:CDS 40.0%
GAAGAATAGGAAGGTGGAAG+AGG + chr1_1:47738500-47738519 None:intergenic 45.0%
GAAGGAGAAGAATAGGAAGG+TGG + chr1_1:47738506-47738525 None:intergenic 45.0%
GGTGAAGGAGAAGAATAGGA+AGG + chr1_1:47738509-47738528 None:intergenic 45.0%
!!! GGACGTTTTGAAGAAGGTGA+AGG + chr1_1:47738524-47738543 None:intergenic 45.0%
TTCTCTGAACTCCCCAATTC+TGG - chr1_1:47738554-47738573 Msa0024900:CDS 45.0%
CCTTAACACCACCAGAATTG+GGG + chr1_1:47738568-47738587 None:intergenic 45.0%
GCCTTAACACCACCAGAATT+GGG + chr1_1:47738569-47738588 None:intergenic 45.0%
TGAACCAACAAGGAGTTCCA+AGG + chr1_1:47738591-47738610 None:intergenic 45.0%
!! TTGGAACTCCTTGTTGGTTC+AGG - chr1_1:47738590-47738609 Msa0024900:CDS 45.0%
GAACTTCACCTGAACCAACA+AGG + chr1_1:47738601-47738620 None:intergenic 45.0%
TCAGGTGAAGTTCCTCAAGA+TGG - chr1_1:47738608-47738627 Msa0024900:intron 45.0%
TATACCTGGTCTCCATCTTG+AGG + chr1_1:47738623-47738642 None:intergenic 45.0%
GGTAGACTTGCAGCAAAACA+AGG - chr1_1:47738943-47738962 Msa0024900:intron 45.0%
GACTTGCAGCAAAACAAGGA+TGG - chr1_1:47738947-47738966 Msa0024900:intron 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG - chr1_1:47739026-47739045 Msa0024900:intron 45.0%
AGCTTACCTTACCAGAACCA+AGG + chr1_1:47739035-47739054 None:intergenic 45.0%
!! GAGAATGGATTGCTGTGTTC+AGG - chr1_1:47739487-47739506 Msa0024900:CDS 45.0%
TGCTGTGTTCAGGTAATTGC+TGG - chr1_1:47739497-47739516 Msa0024900:CDS 45.0%
TCATCATACCTCCCTCACTT+GGG - chr1_1:47739567-47739586 Msa0024900:intron 45.0%
GTGTTCTGATACCCAAGTGA+GGG + chr1_1:47739581-47739600 None:intergenic 45.0%
TGTGTTCTGATACCCAAGTG+AGG + chr1_1:47739582-47739601 None:intergenic 45.0%
TGGGTATCAGAACACATCAC+AGG - chr1_1:47739586-47739605 Msa0024900:intron 45.0%
! AATCCGACTCGACTTGCAAA+TGG - chr1_1:47739875-47739894 Msa0024900:CDS 45.0%
TCACCATTTGCAAGTCGAGT+CGG + chr1_1:47739881-47739900 None:intergenic 45.0%
! ACTCGACTTGCAAATGGTGA+AGG - chr1_1:47739881-47739900 Msa0024900:CDS 45.0%
GAAGAATAGGAAGGTGGAAG+AGG + chr1_1:47738500-47738519 None:intergenic 45.0%
GAAGGAGAAGAATAGGAAGG+TGG + chr1_1:47738506-47738525 None:intergenic 45.0%
GGTGAAGGAGAAGAATAGGA+AGG + chr1_1:47738509-47738528 None:intergenic 45.0%
!!! GGACGTTTTGAAGAAGGTGA+AGG + chr1_1:47738524-47738543 None:intergenic 45.0%
TTCTCTGAACTCCCCAATTC+TGG - chr1_1:47738554-47738573 Msa0024900:CDS 45.0%
CCTTAACACCACCAGAATTG+GGG + chr1_1:47738568-47738587 None:intergenic 45.0%
GCCTTAACACCACCAGAATT+GGG + chr1_1:47738569-47738588 None:intergenic 45.0%
TGAACCAACAAGGAGTTCCA+AGG + chr1_1:47738591-47738610 None:intergenic 45.0%
!! TTGGAACTCCTTGTTGGTTC+AGG - chr1_1:47738590-47738609 Msa0024900:CDS 45.0%
GAACTTCACCTGAACCAACA+AGG + chr1_1:47738601-47738620 None:intergenic 45.0%
TCAGGTGAAGTTCCTCAAGA+TGG - chr1_1:47738608-47738627 Msa0024900:intron 45.0%
TATACCTGGTCTCCATCTTG+AGG + chr1_1:47738623-47738642 None:intergenic 45.0%
GGTAGACTTGCAGCAAAACA+AGG - chr1_1:47738943-47738962 Msa0024900:intron 45.0%
GACTTGCAGCAAAACAAGGA+TGG - chr1_1:47738947-47738966 Msa0024900:intron 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG - chr1_1:47739026-47739045 Msa0024900:intron 45.0%
AGCTTACCTTACCAGAACCA+AGG + chr1_1:47739035-47739054 None:intergenic 45.0%
!! GAGAATGGATTGCTGTGTTC+AGG - chr1_1:47739487-47739506 Msa0024900:CDS 45.0%
TGCTGTGTTCAGGTAATTGC+TGG - chr1_1:47739497-47739516 Msa0024900:CDS 45.0%
TCATCATACCTCCCTCACTT+GGG - chr1_1:47739567-47739586 Msa0024900:intron 45.0%
GTGTTCTGATACCCAAGTGA+GGG + chr1_1:47739581-47739600 None:intergenic 45.0%
TGTGTTCTGATACCCAAGTG+AGG + chr1_1:47739582-47739601 None:intergenic 45.0%
TGGGTATCAGAACACATCAC+AGG - chr1_1:47739586-47739605 Msa0024900:intron 45.0%
! AATCCGACTCGACTTGCAAA+TGG - chr1_1:47739875-47739894 Msa0024900:CDS 45.0%
TCACCATTTGCAAGTCGAGT+CGG + chr1_1:47739881-47739900 None:intergenic 45.0%
! ACTCGACTTGCAAATGGTGA+AGG - chr1_1:47739881-47739900 Msa0024900:CDS 45.0%
!! ATTAATGAAATTTATATTTA+AGG - chr1_1:47740085-47740104 Msa0024900:CDS 5.0%
!! ATTAATGAAATTTATATTTA+AGG - chr1_1:47740085-47740104 Msa0024900:CDS 5.0%
ACACACGTGTTGCACTTCCA+AGG + chr1_1:47738385-47738404 None:intergenic 50.0%
TCTGAACTCCCCAATTCTGG+TGG - chr1_1:47738557-47738576 Msa0024900:CDS 50.0%
! CCCCAATTCTGGTGGTGTTA+AGG - chr1_1:47738565-47738584 Msa0024900:CDS 50.0%
GGCCTTAACACCACCAGAAT+TGG + chr1_1:47738570-47738589 None:intergenic 50.0%
! TTCTGGTGGTGTTAAGGCCT+TGG - chr1_1:47738571-47738590 Msa0024900:CDS 50.0%
AAGGCCTTGGAACTCCTTGT+TGG - chr1_1:47738584-47738603 Msa0024900:CDS 50.0%
AGTTCCTCAAGATGGAGACC+AGG - chr1_1:47738616-47738635 Msa0024900:intron 50.0%
GTCATCATACCTCCCTCACT+TGG - chr1_1:47739566-47739585 Msa0024900:intron 50.0%
TTCTGATACCCAAGTGAGGG+AGG + chr1_1:47739578-47739597 None:intergenic 50.0%
ACACACGTGTTGCACTTCCA+AGG + chr1_1:47738385-47738404 None:intergenic 50.0%
TCTGAACTCCCCAATTCTGG+TGG - chr1_1:47738557-47738576 Msa0024900:CDS 50.0%
! CCCCAATTCTGGTGGTGTTA+AGG - chr1_1:47738565-47738584 Msa0024900:CDS 50.0%
GGCCTTAACACCACCAGAAT+TGG + chr1_1:47738570-47738589 None:intergenic 50.0%
! TTCTGGTGGTGTTAAGGCCT+TGG - chr1_1:47738571-47738590 Msa0024900:CDS 50.0%
AAGGCCTTGGAACTCCTTGT+TGG - chr1_1:47738584-47738603 Msa0024900:CDS 50.0%
AGTTCCTCAAGATGGAGACC+AGG - chr1_1:47738616-47738635 Msa0024900:intron 50.0%
GTCATCATACCTCCCTCACT+TGG - chr1_1:47739566-47739585 Msa0024900:intron 50.0%
TTCTGATACCCAAGTGAGGG+AGG + chr1_1:47739578-47739597 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 47738327 47740136 47738327 ID=Msa0024900;Name=Msa0024900
chr1_1 mRNA 47738327 47740136 47738327 ID=Msa0024900-mRNA-1;Parent=Msa0024900;Name=Msa0024900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=26|1|1|1|0.66|0.75|4|175|215
chr1_1 exon 47738327 47738624 47738327 ID=Msa0024900-mRNA-1:exon:13590;Parent=Msa0024900-mRNA-1
chr1_1 exon 47738838 47738954 47738838 ID=Msa0024900-mRNA-1:exon:13589;Parent=Msa0024900-mRNA-1
chr1_1 exon 47739416 47739538 47739416 ID=Msa0024900-mRNA-1:exon:13588;Parent=Msa0024900-mRNA-1
chr1_1 exon 47739826 47740136 47739826 ID=Msa0024900-mRNA-1:exon:13587;Parent=Msa0024900-mRNA-1
chr1_1 five_prime_UTR 47740111 47740136 47740111 ID=Msa0024900-mRNA-1:five_prime_utr;Parent=Msa0024900-mRNA-1
chr1_1 CDS 47739826 47740110 47739826 ID=Msa0024900-mRNA-1:cds;Parent=Msa0024900-mRNA-1
chr1_1 CDS 47739416 47739538 47739416 ID=Msa0024900-mRNA-1:cds;Parent=Msa0024900-mRNA-1
chr1_1 CDS 47738838 47738954 47738838 ID=Msa0024900-mRNA-1:cds;Parent=Msa0024900-mRNA-1
chr1_1 CDS 47738502 47738624 47738502 ID=Msa0024900-mRNA-1:cds;Parent=Msa0024900-mRNA-1
chr1_1 three_prime_UTR 47738327 47738501 47738327 ID=Msa0024900-mRNA-1:three_prime_utr;Parent=Msa0024900-mRNA-1
Gene Sequence

>Msa0024900

ATGAAGATGAAGATAATAAAATACTGTGTCCTTGGAAGTGCAACACGTGTGTGTGCCACTCTCCCTCACACAAAATATCCATGTAACATAACAAGAAGACCCTTATCTCTGTCTCTAATCTCCACTGCTTTAATCTTCTCACTTCCTCTTCCACCTTCCTATTCTTCTCCTTCACCTTCTTCAAAACGTCCAATAGCAGATTTCTCTGAACTCCCCAATTCTGGTGGTGTTAAGGCCTTGGAACTCCTTGTTGGTTCAGGTGAAGTTCCTCAAGATGGAGACCAGGTTGAGATTCATTACTATGGTAGACTTGCAGCAAAACAAGGATGGCGTTTTGATTCAACCTATGACCACAAAGATGAGAATGGTGATCCTAATCCTTTTGTCTTTGTCCTTGGTTCTGGTAAGGTAATTGCTGGAATTGATGTGGCAGTGAGATCAATGAAAGTAGGTGGTATTCGTCGAGTCATCATACCTCCCTCACTTGGGTATCAGAACACATCACAGGAACCTATCCCACCTAATTTCTTTGACAGGCAGAGGCTGTTCACTACCATTTTTAATCCGACTCGACTTGCAAATGGTGAAGGTTCGACTTTAGGGACACTTATATTTGATATTGAACTGGTTGGTCTGAGGCATCAATGA

Protein sequence

>Msa0024900

MKMKIIKYCVLGSATRVCATLPHTKYPCNITRRPLSLSLISTALIFSLPLPPSYSSPSPSSKRPIADFSELPNSGGVKALELLVGSGEVPQDGDQVEIHYYGRLAAKQGWRFDSTYDHKDENGDPNPFVFVLGSGKVIAGIDVAVRSMKVGGIRRVIIPPSLGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVGLRHQ*