Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06290.t1 | RZC07838.1 | 62.3 | 393 | 100 | 8 | 1 | 380 | 1 | 358 | 4.20E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06290.t1 | Q67YC9 | 62.5 | 192 | 62 | 3 | 14 | 197 | 7 | 196 | 3.7e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06290.t1 | A0A445KAJ8 | 62.3 | 393 | 100 | 8 | 1 | 380 | 1 | 358 | 3.0e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene06290 | 0.892657 | 1.30E-74 | -1.69E-46 |
| MS.gene049173 | MS.gene06290 | 0.865138 | 7.34E-65 | -1.69E-46 |
| MS.gene049217 | MS.gene06290 | 0.861401 | 1.05E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene06290 | 0.877379 | 6.59E-69 | -1.69E-46 |
| MS.gene049232 | MS.gene06290 | 0.816409 | 5.61E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene06290 | 0.902513 | 8.98E-79 | -1.69E-46 |
| MS.gene049320 | MS.gene06290 | 0.880712 | 4.38E-70 | -1.69E-46 |
| MS.gene049427 | MS.gene06290 | 0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene06290 | 0.8536 | 2.15E-61 | -1.69E-46 |
| MS.gene049615 | MS.gene06290 | 0.8081 | 3.66E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene06290 | 0.809005 | 2.34E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene06290 | 0.858454 | 8.15E-63 | -1.69E-46 |
| MS.gene049805 | MS.gene06290 | 0.823815 | 1.13E-53 | -1.69E-46 |
| MS.gene05010 | MS.gene06290 | 0.840776 | 7.09E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene06290 | 0.881218 | 2.88E-70 | -1.69E-46 |
| MS.gene050165 | MS.gene06290 | 0.880011 | 7.80E-70 | -1.69E-46 |
| MS.gene050323 | MS.gene06290 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene06290 | 0.889445 | 2.41E-73 | -1.69E-46 |
| MS.gene050444 | MS.gene06290 | 0.829582 | 4.75E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene06290 | 0.872902 | 2.23E-67 | -1.69E-46 |
| MS.gene050518 | MS.gene06290 | 0.895479 | 9.22E-76 | -1.69E-46 |
| MS.gene050538 | MS.gene06290 | 0.822629 | 2.14E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene06290 | 0.822087 | 2.86E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene06290 | 0.825417 | 4.74E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene06290 | 0.902222 | 1.21E-78 | -1.69E-46 |
| MS.gene050675 | MS.gene06290 | 0.871996 | 4.46E-67 | -1.69E-46 |
| MS.gene050699 | MS.gene06290 | 0.872148 | 3.97E-67 | -1.69E-46 |
| MS.gene050747 | MS.gene06290 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene050767 | MS.gene06290 | 0.822384 | 2.44E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene06290 | 0.825114 | 5.59E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene06290 | 0.883748 | 3.45E-71 | -1.69E-46 |
| MS.gene05080 | MS.gene06290 | 0.862611 | 4.48E-64 | -1.69E-46 |
| MS.gene05081 | MS.gene06290 | 0.808684 | 2.74E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene06290 | 0.837412 | 5.28E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene06290 | 0.831293 | 1.81E-55 | -1.69E-46 |
| MS.gene050876 | MS.gene06290 | 0.81398 | 1.94E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene06290 | 0.816975 | 4.19E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene06290 | 0.838163 | 3.39E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene06290 | 0.869732 | 2.48E-66 | -1.69E-46 |
| MS.gene05100 | MS.gene06290 | 0.838938 | 2.14E-57 | -1.69E-46 |
| MS.gene051228 | MS.gene06290 | 0.864619 | 1.07E-64 | -1.69E-46 |
| MS.gene051268 | MS.gene06290 | 0.811648 | 6.30E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene06290 | 0.846051 | 2.77E-59 | -1.69E-46 |
| MS.gene051434 | MS.gene06290 | 0.842726 | 2.17E-58 | -1.69E-46 |
| MS.gene051551 | MS.gene06290 | 0.826575 | 2.52E-54 | -1.69E-46 |
| MS.gene051617 | MS.gene06290 | 0.840917 | 6.51E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene06290 | 0.837406 | 5.30E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene06290 | 0.816051 | 6.75E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene06290 | 0.888778 | 4.36E-73 | -1.69E-46 |
| MS.gene051858 | MS.gene06290 | 0.833119 | 6.40E-56 | -1.69E-46 |
| MS.gene051949 | MS.gene06290 | 0.877254 | 7.28E-69 | -1.69E-46 |
| MS.gene052164 | MS.gene06290 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene06290 | 0.854931 | 8.86E-62 | -1.69E-46 |
| MS.gene052379 | MS.gene06290 | 0.853514 | 2.27E-61 | -1.69E-46 |
| MS.gene052482 | MS.gene06290 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene06290 | 0.831966 | 1.24E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene06290 | 0.813041 | 3.13E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene06290 | 0.829151 | 6.04E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene06290 | 0.824349 | 8.47E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene06290 | 0.845552 | 3.78E-59 | -1.69E-46 |
| MS.gene052870 | MS.gene06290 | 0.848764 | 4.98E-60 | -1.69E-46 |
| MS.gene052872 | MS.gene06290 | 0.846068 | 2.74E-59 | -1.69E-46 |
| MS.gene052916 | MS.gene06290 | 0.836056 | 1.17E-56 | -1.69E-46 |
| MS.gene052966 | MS.gene06290 | 0.853102 | 2.98E-61 | -1.69E-46 |
| MS.gene053009 | MS.gene06290 | 0.86622 | 3.34E-65 | -1.69E-46 |
| MS.gene053104 | MS.gene06290 | 0.840728 | 7.30E-58 | -1.69E-46 |
| MS.gene053107 | MS.gene06290 | 0.826965 | 2.03E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene06290 | 0.847003 | 1.52E-59 | -1.69E-46 |
| MS.gene053207 | MS.gene06290 | 0.866961 | 1.94E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene06290 | 0.871977 | 4.53E-67 | -1.69E-46 |
| MS.gene053284 | MS.gene06290 | 0.835257 | 1.86E-56 | -1.69E-46 |
| MS.gene053285 | MS.gene06290 | 0.831529 | 1.59E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene06290 | 0.871931 | 4.69E-67 | -1.69E-46 |
| MS.gene053322 | MS.gene06290 | 0.84096 | 6.34E-58 | -1.69E-46 |
| MS.gene053479 | MS.gene06290 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene053561 | MS.gene06290 | -0.811015 | 8.65E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene06290 | 0.841449 | 4.72E-58 | -1.69E-46 |
| MS.gene053632 | MS.gene06290 | 0.852649 | 4.02E-61 | -1.69E-46 |
| MS.gene053824 | MS.gene06290 | 0.838911 | 2.17E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene06290 | 0.856607 | 2.87E-62 | -1.69E-46 |
| MS.gene054374 | MS.gene06290 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene06290 | 0.807165 | 5.77E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene06290 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene06290 | 0.826278 | 2.96E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene06290 | 0.892534 | 1.45E-74 | -1.69E-46 |
| MS.gene054642 | MS.gene06290 | 0.908093 | 2.49E-81 | -1.69E-46 |
| MS.gene05470 | MS.gene06290 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene06290 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene06290 | 0.881944 | 1.58E-70 | -1.69E-46 |
| MS.gene05505 | MS.gene06290 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene06290 | -0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene06290 | 0.87823 | 3.32E-69 | -1.69E-46 |
| MS.gene055212 | MS.gene06290 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene055224 | MS.gene06290 | 0.831806 | 1.35E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene06290 | 0.820224 | 7.68E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene06290 | 0.885638 | 6.84E-72 | -1.69E-46 |
| MS.gene055397 | MS.gene06290 | 0.827665 | 1.38E-54 | -1.69E-46 |
| MS.gene055499 | MS.gene06290 | 0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene06290 | 0.869311 | 3.40E-66 | -1.69E-46 |
| MS.gene055577 | MS.gene06290 | 0.879235 | 1.47E-69 | -1.69E-46 |
| MS.gene055634 | MS.gene06290 | 0.827365 | 1.63E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene06290 | 0.869628 | 2.69E-66 | -1.69E-46 |
| MS.gene055638 | MS.gene06290 | 0.868913 | 4.59E-66 | -1.69E-46 |
| MS.gene055647 | MS.gene06290 | 0.853971 | 1.68E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene06290 | 0.867325 | 1.49E-65 | -1.69E-46 |
| MS.gene055748 | MS.gene06290 | 0.870446 | 1.45E-66 | -1.69E-46 |
| MS.gene055750 | MS.gene06290 | 0.84194 | 3.50E-58 | -1.69E-46 |
| MS.gene055751 | MS.gene06290 | 0.868034 | 8.81E-66 | -1.69E-46 |
| MS.gene055776 | MS.gene06290 | 0.834715 | 2.55E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene06290 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene06290 | 0.878134 | 3.59E-69 | -1.69E-46 |
| MS.gene055941 | MS.gene06290 | 0.834448 | 2.98E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene06290 | -0.825662 | 4.15E-54 | -1.69E-46 |
| MS.gene056083 | MS.gene06290 | 0.831268 | 1.84E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene06290 | 0.870787 | 1.12E-66 | -1.69E-46 |
| MS.gene056409 | MS.gene06290 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene06290 | 0.839583 | 1.45E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene06290 | 0.83455 | 2.81E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene06290 | 0.873665 | 1.23E-67 | -1.69E-46 |
| MS.gene056610 | MS.gene06290 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene06290 | 0.87807 | 3.78E-69 | -1.69E-46 |
| MS.gene056692 | MS.gene06290 | 0.855263 | 7.09E-62 | -1.69E-46 |
| MS.gene056897 | MS.gene06290 | 0.836097 | 1.14E-56 | -1.69E-46 |
| MS.gene056898 | MS.gene06290 | 0.838017 | 3.69E-57 | -1.69E-46 |
| MS.gene057011 | MS.gene06290 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene06290 | 0.810606 | 1.06E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene06290 | 0.871046 | 9.21E-67 | -1.69E-46 |
| MS.gene057246 | MS.gene06290 | 0.813835 | 2.09E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene06290 | 0.888591 | 5.15E-73 | -1.69E-46 |
| MS.gene057332 | MS.gene06290 | 0.806723 | 7.16E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene06290 | 0.870248 | 1.68E-66 | -1.69E-46 |
| MS.gene057658 | MS.gene06290 | 0.826846 | 2.17E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene06290 | 0.852825 | 3.58E-61 | -1.69E-46 |
| MS.gene057926 | MS.gene06290 | 0.807533 | 4.83E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene06290 | 0.807277 | 5.47E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene06290 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene06290 | 0.840011 | 1.12E-57 | -1.69E-46 |
| MS.gene058335 | MS.gene06290 | 0.801435 | 9.01E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene06290 | 0.81078 | 9.72E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene06290 | 0.841071 | 5.94E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene06290 | 0.885562 | 7.31E-72 | -1.69E-46 |
| MS.gene058544 | MS.gene06290 | 0.858785 | 6.49E-63 | -1.69E-46 |
| MS.gene058723 | MS.gene06290 | 0.873271 | 1.67E-67 | -1.69E-46 |
| MS.gene058773 | MS.gene06290 | 0.91509 | 8.89E-85 | -1.69E-46 |
| MS.gene058838 | MS.gene06290 | 0.838317 | 3.09E-57 | -1.69E-46 |
| MS.gene058978 | MS.gene06290 | -0.813932 | 1.99E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene06290 | 0.889529 | 2.23E-73 | -1.69E-46 |
| MS.gene059023 | MS.gene06290 | 0.877015 | 8.82E-69 | -1.69E-46 |
| MS.gene059029 | MS.gene06290 | 0.86753 | 1.28E-65 | -1.69E-46 |
| MS.gene059079 | MS.gene06290 | 0.822619 | 2.15E-53 | -1.69E-46 |
| MS.gene05913 | MS.gene06290 | 0.815203 | 1.04E-51 | -1.69E-46 |
| MS.gene059181 | MS.gene06290 | 0.800694 | 1.28E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene06290 | 0.827847 | 1.25E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene06290 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene06290 | 0.895596 | 8.24E-76 | -1.69E-46 |
| MS.gene059718 | MS.gene06290 | 0.878095 | 3.71E-69 | -1.69E-46 |
| MS.gene059756 | MS.gene06290 | 0.838789 | 2.33E-57 | -1.69E-46 |
| MS.gene059801 | MS.gene06290 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene06290 | 0.849784 | 2.59E-60 | -1.69E-46 |
| MS.gene059902 | MS.gene06290 | 0.830843 | 2.34E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene06290 | 0.851172 | 1.06E-60 | -1.69E-46 |
| MS.gene060193 | MS.gene06290 | 0.819792 | 9.64E-53 | -1.69E-46 |
| MS.gene060341 | MS.gene06290 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene06290 | 0.8305 | 2.84E-55 | -1.69E-46 |
| MS.gene060728 | MS.gene06290 | 0.825436 | 4.69E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene06290 | 0.870396 | 1.51E-66 | -1.69E-46 |
| MS.gene06077 | MS.gene06290 | 0.84433 | 8.08E-59 | -1.69E-46 |
| MS.gene060804 | MS.gene06290 | 0.822597 | 2.18E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene06290 | 0.830434 | 2.94E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene06290 | 0.815465 | 9.12E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene06290 | 0.87664 | 1.19E-68 | -1.69E-46 |
| MS.gene060982 | MS.gene06290 | 0.837177 | 6.06E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene06290 | 0.890249 | 1.17E-73 | -1.69E-46 |
| MS.gene061171 | MS.gene06290 | 0.807953 | 3.93E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene06290 | 0.851728 | 7.35E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06290.t1 | MTR_3g098500 | 95.413 | 218 | 10 | 0 | 189 | 406 | 5 | 222 | 3.79e-154 | 434 |
| MS.gene06290.t1 | MTR_3g098500 | 74.877 | 203 | 43 | 3 | 1 | 197 | 7 | 207 | 1.59e-106 | 313 |
| MS.gene06290.t1 | MTR_3g098490 | 93.264 | 193 | 13 | 0 | 1 | 193 | 1 | 193 | 1.11e-133 | 382 |
| MS.gene06290.t1 | MTR_3g098490 | 75.229 | 218 | 46 | 3 | 191 | 406 | 1 | 212 | 5.06e-116 | 337 |
| MS.gene06290.t1 | MTR_8g096110 | 68.085 | 188 | 57 | 2 | 1 | 186 | 1 | 187 | 1.41e-89 | 270 |
| MS.gene06290.t1 | MTR_8g096110 | 64.737 | 190 | 64 | 2 | 191 | 380 | 1 | 187 | 4.17e-82 | 251 |
| MS.gene06290.t1 | MTR_8g096080 | 69.474 | 190 | 53 | 3 | 1 | 186 | 1 | 189 | 3.87e-89 | 269 |
| MS.gene06290.t1 | MTR_8g096080 | 64.062 | 192 | 64 | 4 | 191 | 380 | 1 | 189 | 7.21e-81 | 248 |
| MS.gene06290.t1 | MTR_8g096100 | 63.830 | 188 | 65 | 3 | 1 | 186 | 1 | 187 | 5.18e-79 | 243 |
| MS.gene06290.t1 | MTR_8g096100 | 56.316 | 190 | 80 | 2 | 191 | 380 | 1 | 187 | 6.04e-71 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06290.t1 | AT3G23760 | 64.706 | 187 | 58 | 3 | 7 | 187 | 7 | 191 | 4.01e-83 | 253 |
| MS.gene06290.t1 | AT3G23760 | 61.828 | 186 | 60 | 4 | 202 | 380 | 9 | 190 | 2.01e-77 | 238 |
| MS.gene06290.t1 | AT4G14100 | 61.856 | 194 | 64 | 3 | 14 | 199 | 7 | 198 | 4.76e-82 | 250 |
| MS.gene06290.t1 | AT4G14100 | 60.656 | 183 | 65 | 4 | 201 | 380 | 7 | 185 | 1.38e-74 | 231 |
Find 114 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACTGTTCATGAGGATTT+TGG | 0.136762 | 3.1:+78073804 | MS.gene06290:CDS |
| CGACAGCATTGAGTTGATTT+TGG | 0.167038 | 3.1:-78073087 | None:intergenic |
| CTTGATGGTGCTACCTATTT+AGG | 0.222154 | 3.1:+78071481 | MS.gene06290:CDS |
| CTCCGTCCTAATTGGCTTGA+TGG | 0.262701 | 3.1:+78071466 | MS.gene06290:CDS |
| AAGCGGATCCCTACAGAAAT+TGG | 0.272446 | 3.1:+78071279 | MS.gene06290:CDS |
| GCTCTTGTTCATAAACATTA+AGG | 0.279361 | 3.1:-78073002 | None:intergenic |
| ATAATTTCCTTTGTAATGTT+TGG | 0.290309 | 3.1:+78073260 | MS.gene06290:CDS |
| CTTGAGGGCGCTACGTATTT+AGG | 0.303379 | 3.1:+78073223 | MS.gene06290:CDS |
| TCCGGCCAAGCTGCCGGAAC+TGG | 0.316253 | 3.1:-78071226 | None:intergenic |
| AACTTGTTCTTGACCTAAAT+AGG | 0.332003 | 3.1:-78071494 | None:intergenic |
| ATAATTTCCTATGTAATGTT+TGG | 0.333466 | 3.1:+78071518 | MS.gene06290:CDS |
| TCCGGCCAAACAGCCGGAAT+TGG | 0.340541 | 3.1:-78072968 | None:intergenic |
| GTAGCGCCCTCAAGAAAATT+AGG | 0.340967 | 3.1:-78073214 | None:intergenic |
| CCCTACAGAAATTGGACTTA+TGG | 0.343249 | 3.1:+78071287 | MS.gene06290:CDS |
| TGCAATAGAACACACCTTTA+CGG | 0.348173 | 3.1:+78071156 | MS.gene06290:CDS |
| CAATATCATTGAGTTGATCT+TGG | 0.360877 | 3.1:-78071345 | None:intergenic |
| TTGTAGATTACGACCTTGAA+TGG | 0.361181 | 3.1:+78071365 | MS.gene06290:CDS |
| CTGAGCCAATTCCGGCTGTT+TGG | 0.366949 | 3.1:+78072963 | MS.gene06290:CDS |
| TTGGTATTCTCCGTCCTAAT+TGG | 0.369794 | 3.1:+78071458 | MS.gene06290:CDS |
| GTAGCACCATCAAGCCAATT+AGG | 0.370390 | 3.1:-78071472 | None:intergenic |
| TAATTTCCTATGTAATGTTT+GGG | 0.374401 | 3.1:+78071519 | MS.gene06290:CDS |
| TTCGATGGCTGAGCCAATTC+CGG | 0.379483 | 3.1:+78072955 | MS.gene06290:CDS |
| CTCGACGGCGGAGCCAGTTC+CGG | 0.389600 | 3.1:+78071213 | MS.gene06290:CDS |
| GTTAAGTGGTTCTTCTACTC+AGG | 0.396357 | 3.1:+78073334 | MS.gene06290:CDS |
| GAGAGAAGAGAATGACATAT+AGG | 0.411659 | 3.1:-78072919 | None:intergenic |
| GAGTAGAAGAACCACTTAAC+AGG | 0.415932 | 3.1:-78073331 | None:intergenic |
| GGAGAATACCTACAGGAAAC+TGG | 0.417162 | 3.1:-78073189 | None:intergenic |
| GCCAATTCCGGCTGTTTGGC+CGG | 0.420441 | 3.1:+78072967 | MS.gene06290:CDS |
| GCCAGTTCCGGCAGCTTGGC+CGG | 0.421754 | 3.1:+78071225 | MS.gene06290:CDS |
| CTGCAATAGAACAACTATCT+AGG | 0.426683 | 3.1:+78072891 | MS.gene06290:CDS |
| TCCTGCAGAAAGTGGACTTA+TGG | 0.436493 | 3.1:+78073029 | MS.gene06290:CDS |
| GTGTAGAAGATCCACTTAAC+AGG | 0.441540 | 3.1:-78071589 | None:intergenic |
| TGTCATTCTCTTCTCTCTCT+CGG | 0.441820 | 3.1:+78072925 | MS.gene06290:CDS |
| AACTGCTCCGGCCAAGCTGC+CGG | 0.446630 | 3.1:-78071232 | None:intergenic |
| ATGTTGAAGTTTCGACCATT+GGG | 0.451018 | 3.1:-78071319 | None:intergenic |
| GTCTGATTGAAGCAGTATAC+AGG | 0.464973 | 3.1:-78072038 | None:intergenic |
| GAGTAGTACCGTTACCGTAA+AGG | 0.468001 | 3.1:-78071170 | None:intergenic |
| GTCTGATTGAAGCAGTATAT+AGG | 0.470699 | 3.1:-78073759 | None:intergenic |
| CGCTCATGTAATGACGTTTG+AGG | 0.471029 | 3.1:+78073701 | MS.gene06290:CDS |
| TGCAGTGGCGGTCGGAGGGA+TGG | 0.474901 | 3.1:-78071417 | None:intergenic |
| ATGTTGAAGTTTCGACCGTT+AGG | 0.477068 | 3.1:-78073061 | None:intergenic |
| AGGTTCCATTGGTCCATTCA+AGG | 0.477181 | 3.1:-78071378 | None:intergenic |
| AACTGCTCCGGCCAAACAGC+CGG | 0.482218 | 3.1:-78072974 | None:intergenic |
| GATGTTGAAGTTTCGACCAT+TGG | 0.482547 | 3.1:-78071320 | None:intergenic |
| CTTTCTCCCAAACATTACAT+AGG | 0.489592 | 3.1:-78071525 | None:intergenic |
| CATGTAATGACGTTTGAGGT+TGG | 0.496845 | 3.1:+78073705 | MS.gene06290:CDS |
| TTGTTCTATTGCAGAGGCCA+TGG | 0.498883 | 3.1:-78072882 | None:intergenic |
| GTTAAGTGGATCTTCTACAC+TGG | 0.500811 | 3.1:+78071592 | MS.gene06290:CDS |
| GCTTGAGGAACCGCATTGGC+AGG | 0.504494 | 3.1:+78073734 | MS.gene06290:CDS |
| CGGAGCCAGTTCCGGCAGCT+TGG | 0.510708 | 3.1:+78071221 | MS.gene06290:CDS |
| AACCTTGCAGTGGCGGTCGG+AGG | 0.511934 | 3.1:-78071422 | None:intergenic |
| ACCTTGCAGTGGCGGTCGGA+GGG | 0.512978 | 3.1:-78071421 | None:intergenic |
| GGGATGGAGAGTGTAGATGA+AGG | 0.516088 | 3.1:-78073143 | None:intergenic |
| ACCATAAGTCCACTTTCTGC+AGG | 0.523892 | 3.1:-78073030 | None:intergenic |
| ACCATAAGTCCAATTTCTGT+AGG | 0.527172 | 3.1:-78071288 | None:intergenic |
| TCGTCGTTTACGACCTCGAA+TGG | 0.528379 | 3.1:+78073107 | MS.gene06290:CDS |
| TGCAATGGCGGTCTGAGGGA+TGG | 0.534618 | 3.1:-78073159 | None:intergenic |
| TCACTCGAAGGCCTGTTAAG+TGG | 0.539058 | 3.1:+78071578 | MS.gene06290:CDS |
| GACAACCTTGCAGTGGCGGT+CGG | 0.543354 | 3.1:-78071425 | None:intergenic |
| GACCTTGCAATGGCGGTCTG+AGG | 0.545191 | 3.1:-78073164 | None:intergenic |
| TTATGGTACGACTGGCCTAA+CGG | 0.548138 | 3.1:+78073046 | MS.gene06290:CDS |
| GAGCGGAGTCCTGCAGAAAG+TGG | 0.548813 | 3.1:+78073021 | MS.gene06290:CDS |
| TGCTCATGTGATGACATTTG+AGG | 0.548966 | 3.1:+78071980 | MS.gene06290:CDS |
| CACTGCTTGAGGAACCGCAT+TGG | 0.549270 | 3.1:+78073730 | MS.gene06290:CDS |
| GCTTGAGGATGTGCATTGGC+AGG | 0.549400 | 3.1:+78072013 | MS.gene06290:CDS |
| ACCTTGCAATGGCGGTCTGA+GGG | 0.550186 | 3.1:-78073163 | None:intergenic |
| TCACTCGTAGACCTGTTAAG+TGG | 0.552659 | 3.1:+78073320 | MS.gene06290:CDS |
| TCCCTCCGACCGCCACTGCA+AGG | 0.553601 | 3.1:+78071420 | MS.gene06290:CDS |
| GTACATGAAGGAGGTTCCAT+TGG | 0.555646 | 3.1:-78071389 | None:intergenic |
| TCCCTCAGACCGCCATTGCA+AGG | 0.555841 | 3.1:+78073162 | MS.gene06290:CDS |
| TTATGGTACGACTGGCCCAA+TGG | 0.558393 | 3.1:+78071304 | MS.gene06290:CDS |
| ATTAAGGCATGAAACTGCTC+CGG | 0.562441 | 3.1:-78072986 | None:intergenic |
| AGGTACCGTTGGTCCATTCG+AGG | 0.563492 | 3.1:-78073120 | None:intergenic |
| ATGGAGAGTGTAGATGAAGG+AGG | 0.563676 | 3.1:-78073140 | None:intergenic |
| GCTTCTGTTCATGAATAGTA+CGG | 0.566725 | 3.1:-78071260 | None:intergenic |
| CCATAAGTCCAATTTCTGTA+GGG | 0.573008 | 3.1:-78071287 | None:intergenic |
| CATGGACAACCTTGCAGTGG+CGG | 0.573319 | 3.1:-78071429 | None:intergenic |
| AGTACGGAATGAAACTGCTC+CGG | 0.575238 | 3.1:-78071244 | None:intergenic |
| AAGTGGACTTATGGTACGAC+TGG | 0.577314 | 3.1:+78073038 | MS.gene06290:CDS |
| TGAGGTTGGAGCACTGCTTG+AGG | 0.579016 | 3.1:+78073719 | MS.gene06290:CDS |
| AAAATCCTCATGAACAGTAG+TGG | 0.580647 | 3.1:-78073802 | None:intergenic |
| ACTGGACGACCTTGCAATGG+CGG | 0.580698 | 3.1:-78073171 | None:intergenic |
| AATTGGACTTATGGTACGAC+TGG | 0.582011 | 3.1:+78071296 | MS.gene06290:CDS |
| TCTCTCGGCTTCATATTCGA+TGG | 0.592702 | 3.1:+78072940 | MS.gene06290:CDS |
| AGAACACACCTTTACGGTAA+CGG | 0.593520 | 3.1:+78071162 | MS.gene06290:CDS |
| CATGTGATGACATTTGAGGT+TGG | 0.595333 | 3.1:+78071984 | MS.gene06290:CDS |
| AAGGTTGTCCATGTTGAAGT+TGG | 0.595989 | 3.1:+78071439 | MS.gene06290:CDS |
| CTTTCGTCCAAACATTACAA+AGG | 0.600135 | 3.1:-78073267 | None:intergenic |
| GATGAAACTTAGAGCAGCCA+TGG | 0.603003 | 3.1:+78072865 | MS.gene06290:intron |
| GTAGATGAAGGAGGTACCGT+TGG | 0.604808 | 3.1:-78073131 | None:intergenic |
| ATGAAGATGTTCTCACTCGA+AGG | 0.605789 | 3.1:+78071566 | MS.gene06290:CDS |
| CGCCCTCAAGAAAATTAGGA+CGG | 0.606966 | 3.1:-78073210 | None:intergenic |
| CACCATCAAGCCAATTAGGA+CGG | 0.609769 | 3.1:-78071468 | None:intergenic |
| TGAGGTTGGAGCAGTGCTTG+AGG | 0.612681 | 3.1:+78071998 | MS.gene06290:CDS |
| AAGGTCGTCCAGTTTCCTGT+AGG | 0.614277 | 3.1:+78073181 | MS.gene06290:CDS |
| AGATAGTTGTTCTATTGCAG+AGG | 0.619269 | 3.1:-78072888 | None:intergenic |
| TACGACCTTGAATGGACCAA+TGG | 0.624357 | 3.1:+78071373 | MS.gene06290:CDS |
| TACGACCTCGAATGGACCAA+CGG | 0.625467 | 3.1:+78073115 | MS.gene06290:CDS |
| AGAATCCACTACTGTTCATG+AGG | 0.630604 | 3.1:+78073797 | MS.gene06290:CDS |
| AAAGGTGTGTTCTATTGCAG+AGG | 0.630711 | 3.1:-78071152 | None:intergenic |
| TTAGGACGGAGAATACCTAC+AGG | 0.634745 | 3.1:-78073196 | None:intergenic |
| GAAACTGGACGACCTTGCAA+TGG | 0.636092 | 3.1:-78073174 | None:intergenic |
| GTACTATTCATGAACAGAAG+CGG | 0.639978 | 3.1:+78071262 | MS.gene06290:CDS |
| GGGATGGAGAGTGTACATGA+AGG | 0.647111 | 3.1:-78071401 | None:intergenic |
| CTCAAACGTCATTACATGAG+CGG | 0.651282 | 3.1:-78073700 | None:intergenic |
| TTAATGTTTATGAACAAGAG+CGG | 0.658259 | 3.1:+78073004 | MS.gene06290:CDS |
| CAGTGCTTGAGGATGTGCAT+TGG | 0.659088 | 3.1:+78072009 | MS.gene06290:CDS |
| ATGGAGAGTGTACATGAAGG+AGG | 0.663920 | 3.1:-78071398 | None:intergenic |
| GGAGAATACCAACTTCAACA+TGG | 0.664515 | 3.1:-78071447 | None:intergenic |
| TCTCTTCTCACTCTCGACGG+CGG | 0.673727 | 3.1:+78071201 | MS.gene06290:CDS |
| CAACATGGACAACCTTGCAG+TGG | 0.677545 | 3.1:-78071432 | None:intergenic |
| CGTTCTCTTCTCACTCTCGA+CGG | 0.680397 | 3.1:+78071198 | MS.gene06290:CDS |
| CGAGAGTGAGAAGAGAACGA+CGG | 0.697861 | 3.1:-78071194 | None:intergenic |
| TATATAGGAGCCTGCCAATG+CGG | 0.702014 | 3.1:-78073744 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAAAAAAAAACTTGTT+TGG | + | chr3.1:78072731-78072750 | MS.gene06290:intron | 10.0% |
| !! | AAAAAATTGGTAAATCAAAA+TGG | + | chr3.1:78072654-78072673 | MS.gene06290:intron | 15.0% |
| !! | GAGATTAAATCTAAAAAAAT+TGG | + | chr3.1:78072641-78072660 | MS.gene06290:intron | 15.0% |
| !! | TAATAATTAATAAGCTCAAT+CGG | - | chr3.1:78073569-78073588 | None:intergenic | 15.0% |
| !!! | ATAGTGATAATTTTAATAGA+TGG | + | chr3.1:78073669-78073688 | MS.gene06290:intron | 15.0% |
| !!! | ATTTTTTTAGATTTAATCTC+TGG | - | chr3.1:78072641-78072660 | None:intergenic | 15.0% |
| !!! | TTTTTTTAGATTTAATCTCT+GGG | - | chr3.1:78072640-78072659 | None:intergenic | 15.0% |
| !! | ATAATTTCCTATGTAATGTT+TGG | + | chr3.1:78071518-78071537 | MS.gene06290:CDS | 20.0% |
| !! | ATAATTTCCTTTGTAATGTT+TGG | + | chr3.1:78073260-78073279 | MS.gene06290:CDS | 20.0% |
| !! | ATGATAAACTAATAAGTTCA+AGG | - | chr3.1:78071844-78071863 | None:intergenic | 20.0% |
| !! | CTTATATGATAACAATTTGT+CGG | + | chr3.1:78071736-78071755 | MS.gene06290:intron | 20.0% |
| !! | GGAAAATTGATGTTAATATT+TGG | - | chr3.1:78072223-78072242 | None:intergenic | 20.0% |
| !! | TAATTTCCTATGTAATGTTT+GGG | + | chr3.1:78071519-78071538 | MS.gene06290:CDS | 20.0% |
| !! | TGATAAACTAATAAGTTCAA+GGG | - | chr3.1:78071843-78071862 | None:intergenic | 20.0% |
| !!! | AAACAAAAAACAAGTCATTT+TGG | - | chr3.1:78072816-78072835 | None:intergenic | 20.0% |
| !!! | CAAAATTTGATTTATGAGTT+TGG | - | chr3.1:78072285-78072304 | None:intergenic | 20.0% |
| !!! | TCTCTTATATTATCACTTTT+GGG | + | chr3.1:78073369-78073388 | MS.gene06290:intron | 20.0% |
| ! | ACTTGTTTGGAAGAATAAAA+TGG | + | chr3.1:78072744-78072763 | MS.gene06290:intron | 25.0% |
| ! | ATGACAAGATAAGCTTAAAT+AGG | - | chr3.1:78073410-78073429 | None:intergenic | 25.0% |
| ! | ATTCACTTCATTCAATATCT+TGG | - | chr3.1:78073601-78073620 | None:intergenic | 25.0% |
| ! | TGAATTAAGGTTTGATATAC+TGG | + | chr3.1:78071938-78071957 | MS.gene06290:intron | 25.0% |
| ! | TTAATGTTTATGAACAAGAG+CGG | + | chr3.1:78073004-78073023 | MS.gene06290:CDS | 25.0% |
| !! | CTCTCTTATATTATCACTTT+TGG | + | chr3.1:78073368-78073387 | MS.gene06290:intron | 25.0% |
| !! | CTTATCTTGTCATACATTTT+GGG | + | chr3.1:78073417-78073436 | MS.gene06290:intron | 25.0% |
| !!! | GTGATAATTTTAATAGATGG+AGG | + | chr3.1:78073672-78073691 | MS.gene06290:intron | 25.0% |
| !!! | TTTGGATTCATTGACTTATT+TGG | + | chr3.1:78071656-78071675 | MS.gene06290:intron | 25.0% |
| AATAAGAGAAACACTCAAAG+TGG | - | chr3.1:78072839-78072858 | None:intergenic | 30.0% | |
| AATGAATCCAAACAGTAACT+AGG | - | chr3.1:78071648-78071667 | None:intergenic | 30.0% | |
| ACAATCATTCGGAAATACAT+TGG | - | chr3.1:78072191-78072210 | None:intergenic | 30.0% | |
| ATAAGAGTTTGATGAATGTG+AGG | - | chr3.1:78072778-78072797 | None:intergenic | 30.0% | |
| CAAACCTTAATTCATTTCAC+AGG | - | chr3.1:78071932-78071951 | None:intergenic | 30.0% | |
| CAATCATTCGGAAATACATT+GGG | - | chr3.1:78072190-78072209 | None:intergenic | 30.0% | |
| CATTCCTGTGAAATGAATTA+AGG | + | chr3.1:78071925-78071944 | MS.gene06290:intron | 30.0% | |
| CTATCTAAAAACAGTCTCTT+AGG | - | chr3.1:78072585-78072604 | None:intergenic | 30.0% | |
| GATATACTGGTAATTAATGC+AGG | + | chr3.1:78071951-78071970 | MS.gene06290:intron | 30.0% | |
| GCTCTTGTTCATAAACATTA+AGG | - | chr3.1:78073005-78073024 | None:intergenic | 30.0% | |
| GGCTAAACTAAACAATCATT+CGG | - | chr3.1:78072202-78072221 | None:intergenic | 30.0% | |
| TGGGAAATAATGAACTGAAT+TGG | + | chr3.1:78072328-78072347 | MS.gene06290:intron | 30.0% | |
| TTAGGTACTAATAAGCGAAT+TGG | - | chr3.1:78072567-78072586 | None:intergenic | 30.0% | |
| ! | AACAGAGCGTATTAATTTTC+GGG | - | chr3.1:78072496-78072515 | None:intergenic | 30.0% |
| ! | AACTTGTTCTTGACCTAAAT+AGG | - | chr3.1:78071497-78071516 | None:intergenic | 30.0% |
| ! | ATTTTCCATCATCATCTTGT+AGG | + | chr3.1:78072236-78072255 | MS.gene06290:intron | 30.0% |
| ! | CAACAGAGCGTATTAATTTT+CGG | - | chr3.1:78072497-78072516 | None:intergenic | 30.0% |
| ! | GCTTATCTTGTCATACATTT+TGG | + | chr3.1:78073416-78073435 | MS.gene06290:intron | 30.0% |
| ! | GTGATAAACAAGACAGATTT+TGG | + | chr3.1:78072365-78072384 | MS.gene06290:intron | 30.0% |
| ! | TTTTCCATCATCATCTTGTA+GGG | + | chr3.1:78072237-78072256 | MS.gene06290:intron | 30.0% |
| !! | CAATATCATTGAGTTGATCT+TGG | - | chr3.1:78071348-78071367 | None:intergenic | 30.0% |
| !! | CTCAGCTATCTTTTACTTTT+GGG | + | chr3.1:78072309-78072328 | MS.gene06290:intron | 30.0% |
| !! | TATCACTTTTGGGCTATATT+TGG | + | chr3.1:78073379-78073398 | MS.gene06290:intron | 30.0% |
| !!! | ACTGTTTTTAGATAGGTAGA+GGG | + | chr3.1:78072590-78072609 | MS.gene06290:intron | 30.0% |
| !!! | CTAAGAGACTGTTTTTAGAT+AGG | + | chr3.1:78072583-78072602 | MS.gene06290:intron | 30.0% |
| AAAATCCTCATGAACAGTAG+TGG | - | chr3.1:78073805-78073824 | None:intergenic | 35.0% | |
| AATTAATACGCTCTGTTGTG+TGG | + | chr3.1:78072499-78072518 | MS.gene06290:intron | 35.0% | |
| ACCATAAGTCCAATTTCTGT+AGG | - | chr3.1:78071291-78071310 | None:intergenic | 35.0% | |
| AGATAGTTGTTCTATTGCAG+AGG | - | chr3.1:78072891-78072910 | None:intergenic | 35.0% | |
| ATGTTGAAGTTTCGACCATT+GGG | - | chr3.1:78071322-78071341 | None:intergenic | 35.0% | |
| CCATAAGTCCAATTTCTGTA+GGG | - | chr3.1:78071290-78071309 | None:intergenic | 35.0% | |
| CTGCAATAGAACAACTATCT+AGG | + | chr3.1:78072891-78072910 | MS.gene06290:CDS | 35.0% | |
| CTTTCGTCCAAACATTACAA+AGG | - | chr3.1:78073270-78073289 | None:intergenic | 35.0% | |
| CTTTCTCCCAAACATTACAT+AGG | - | chr3.1:78071528-78071547 | None:intergenic | 35.0% | |
| GAGAGAAGAGAATGACATAT+AGG | - | chr3.1:78072922-78072941 | None:intergenic | 35.0% | |
| GCTTCTGTTCATGAATAGTA+CGG | - | chr3.1:78071263-78071282 | None:intergenic | 35.0% | |
| GTACTATTCATGAACAGAAG+CGG | + | chr3.1:78071262-78071281 | MS.gene06290:CDS | 35.0% | |
| GTCTGATTGAAGCAGTATAT+AGG | - | chr3.1:78073762-78073781 | None:intergenic | 35.0% | |
| TATCACTCCTAGTTACTGTT+TGG | + | chr3.1:78071638-78071657 | MS.gene06290:intron | 35.0% | |
| TGCAATAGAACACACCTTTA+CGG | + | chr3.1:78071156-78071175 | MS.gene06290:CDS | 35.0% | |
| TTGTAGATTACGACCTTGAA+TGG | + | chr3.1:78071365-78071384 | MS.gene06290:CDS | 35.0% | |
| ! | ACTACTGTTCATGAGGATTT+TGG | + | chr3.1:78073804-78073823 | MS.gene06290:CDS | 35.0% |
| ! | CTACTGTTCATGAGGATTTT+GGG | + | chr3.1:78073805-78073824 | MS.gene06290:CDS | 35.0% |
| ! | GCTCAGCTATCTTTTACTTT+TGG | + | chr3.1:78072308-78072327 | MS.gene06290:intron | 35.0% |
| !! | TCTTTTGGAAGTTTGATGAG+AGG | + | chr3.1:78072098-78072117 | MS.gene06290:intron | 35.0% |
| !!! | GACTGTTTTTAGATAGGTAG+AGG | + | chr3.1:78072589-78072608 | MS.gene06290:intron | 35.0% |
| AAGGTTGTCCATGTTGAAGT+TGG | + | chr3.1:78071439-78071458 | MS.gene06290:CDS | 40.0% | |
| AATTGGACTTATGGTACGAC+TGG | + | chr3.1:78071296-78071315 | MS.gene06290:CDS | 40.0% | |
| AGAACACACCTTTACGGTAA+CGG | + | chr3.1:78071162-78071181 | MS.gene06290:CDS | 40.0% | |
| AGAATCCACTACTGTTCATG+AGG | + | chr3.1:78073797-78073816 | MS.gene06290:CDS | 40.0% | |
| AGAGTTTGATGAATGTGAGG+TGG | - | chr3.1:78072775-78072794 | None:intergenic | 40.0% | |
| ATGAAGATGTTCTCACTCGA+AGG | + | chr3.1:78071566-78071585 | MS.gene06290:CDS | 40.0% | |
| ATGTTGAAGTTTCGACCGTT+AGG | - | chr3.1:78073064-78073083 | None:intergenic | 40.0% | |
| ATTAAGGCATGAAACTGCTC+CGG | - | chr3.1:78072989-78073008 | None:intergenic | 40.0% | |
| CCCTACAGAAATTGGACTTA+TGG | + | chr3.1:78071287-78071306 | MS.gene06290:CDS | 40.0% | |
| CTCAAACGTCATTACATGAG+CGG | - | chr3.1:78073703-78073722 | None:intergenic | 40.0% | |
| GAGTAGAAGAACCACTTAAC+AGG | - | chr3.1:78073334-78073353 | None:intergenic | 40.0% | |
| GATGTTGAAGTTTCGACCAT+TGG | - | chr3.1:78071323-78071342 | None:intergenic | 40.0% | |
| GGAGAATACCAACTTCAACA+TGG | - | chr3.1:78071450-78071469 | None:intergenic | 40.0% | |
| GTCTGATTGAAGCAGTATAC+AGG | - | chr3.1:78072041-78072060 | None:intergenic | 40.0% | |
| GTGTAGAAGATCCACTTAAC+AGG | - | chr3.1:78071592-78071611 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACAC+TGG | + | chr3.1:78071592-78071611 | MS.gene06290:CDS | 40.0% | |
| GTTAAGTGGTTCTTCTACTC+AGG | + | chr3.1:78073334-78073353 | MS.gene06290:CDS | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | + | chr3.1:78071980-78071999 | MS.gene06290:CDS | 40.0% | |
| TGTCATTCTCTTCTCTCTCT+CGG | + | chr3.1:78072925-78072944 | MS.gene06290:CDS | 40.0% | |
| TTAGAATCTGCTACTGTTCG+TGG | + | chr3.1:78072071-78072090 | MS.gene06290:intron | 40.0% | |
| TTGGTATTCTCCGTCCTAAT+TGG | + | chr3.1:78071458-78071477 | MS.gene06290:CDS | 40.0% | |
| TTGTAGGGATGGATGCAATA+TGG | + | chr3.1:78072252-78072271 | MS.gene06290:intron | 40.0% | |
| ! | AAAGGTGTGTTCTATTGCAG+AGG | - | chr3.1:78071155-78071174 | None:intergenic | 40.0% |
| ! | CATGTAATGACGTTTGAGGT+TGG | + | chr3.1:78073705-78073724 | MS.gene06290:CDS | 40.0% |
| ! | CATGTGATGACATTTGAGGT+TGG | + | chr3.1:78071984-78072003 | MS.gene06290:CDS | 40.0% |
| ! | CTCCGTCCTAATTTTCTTGA+GGG | + | chr3.1:78073208-78073227 | MS.gene06290:CDS | 40.0% |
| ! | TCTCCGTCCTAATTTTCTTG+AGG | + | chr3.1:78073207-78073226 | MS.gene06290:CDS | 40.0% |
| !! | CTTGATGGTGCTACCTATTT+AGG | + | chr3.1:78071481-78071500 | MS.gene06290:CDS | 40.0% |
| !! | GATTTTGGGAGTTTGATGAG+AGG | + | chr3.1:78073819-78073838 | MS.gene06290:CDS | 40.0% |
| !!! | CGACAGCATTGAGTTGATTT+TGG | - | chr3.1:78073090-78073109 | None:intergenic | 40.0% |
| AAGCGGATCCCTACAGAAAT+TGG | + | chr3.1:78071279-78071298 | MS.gene06290:CDS | 45.0% | |
| ACCATAAGTCCACTTTCTGC+AGG | - | chr3.1:78073033-78073052 | None:intergenic | 45.0% | |
| AGGTTCCATTGGTCCATTCA+AGG | - | chr3.1:78071381-78071400 | None:intergenic | 45.0% | |
| AGTACGGAATGAAACTGCTC+CGG | - | chr3.1:78071247-78071266 | None:intergenic | 45.0% | |
| CACCATCAAGCCAATTAGGA+CGG | - | chr3.1:78071471-78071490 | None:intergenic | 45.0% | |
| CCATCATCATCTTGTAGGGA+TGG | + | chr3.1:78072241-78072260 | MS.gene06290:intron | 45.0% | |
| CCATCCCTACAAGATGATGA+TGG | - | chr3.1:78072244-78072263 | None:intergenic | 45.0% | |
| CGCCCTCAAGAAAATTAGGA+CGG | - | chr3.1:78073213-78073232 | None:intergenic | 45.0% | |
| CGCTCATGTAATGACGTTTG+AGG | + | chr3.1:78073701-78073720 | MS.gene06290:CDS | 45.0% | |
| GAGTAGTACCGTTACCGTAA+AGG | - | chr3.1:78071173-78071192 | None:intergenic | 45.0% | |
| GATGAAACTTAGAGCAGCCA+TGG | + | chr3.1:78072865-78072884 | MS.gene06290:intron | 45.0% | |
| GGAGAATACCTACAGGAAAC+TGG | - | chr3.1:78073192-78073211 | None:intergenic | 45.0% | |
| GTACATGAAGGAGGTTCCAT+TGG | - | chr3.1:78071392-78071411 | None:intergenic | 45.0% | |
| GTAGCACCATCAAGCCAATT+AGG | - | chr3.1:78071475-78071494 | None:intergenic | 45.0% | |
| GTAGCGCCCTCAAGAAAATT+AGG | - | chr3.1:78073217-78073236 | None:intergenic | 45.0% | |
| GTGGTTCTTCTACTCAGGTT+TGG | + | chr3.1:78073339-78073358 | MS.gene06290:intron | 45.0% | |
| TACGACCTTGAATGGACCAA+TGG | + | chr3.1:78071373-78071392 | MS.gene06290:CDS | 45.0% | |
| TATATAGGAGCCTGCCAATG+CGG | - | chr3.1:78073747-78073766 | None:intergenic | 45.0% | |
| TCACTCGTAGACCTGTTAAG+TGG | + | chr3.1:78073320-78073339 | MS.gene06290:CDS | 45.0% | |
| TCTCTCGGCTTCATATTCGA+TGG | + | chr3.1:78072940-78072959 | MS.gene06290:CDS | 45.0% | |
| TTAGGACGGAGAATACCTAC+AGG | - | chr3.1:78073199-78073218 | None:intergenic | 45.0% | |
| TTGTTCTATTGCAGAGGCCA+TGG | - | chr3.1:78072885-78072904 | None:intergenic | 45.0% | |
| ! | AAGTGGACTTATGGTACGAC+TGG | + | chr3.1:78073038-78073057 | MS.gene06290:CDS | 45.0% |
| ! | ACTGTTCGTGGCGATTCTTT+TGG | + | chr3.1:78072083-78072102 | MS.gene06290:intron | 45.0% |
| ! | ATGGAGAGTGTACATGAAGG+AGG | - | chr3.1:78071401-78071420 | None:intergenic | 45.0% |
| ! | ATGGAGAGTGTAGATGAAGG+AGG | - | chr3.1:78073143-78073162 | None:intergenic | 45.0% |
| ! | TCCTGCAGAAAGTGGACTTA+TGG | + | chr3.1:78073029-78073048 | MS.gene06290:CDS | 45.0% |
| !! | TTATGGTACGACTGGCCTAA+CGG | + | chr3.1:78073046-78073065 | MS.gene06290:CDS | 45.0% |
| !!! | ATTTTTAAATCAATAAAAAA+AGG | + | chr3.1:78072692-78072711 | MS.gene06290:intron | 5.0% |
| !!! | TTTTTAAATCAATAAAAAAA+GGG | + | chr3.1:78072693-78072712 | MS.gene06290:intron | 5.0% |
| AAGGTCGTCCAGTTTCCTGT+AGG | + | chr3.1:78073181-78073200 | MS.gene06290:CDS | 50.0% | |
| CAACATGGACAACCTTGCAG+TGG | - | chr3.1:78071435-78071454 | None:intergenic | 50.0% | |
| CACGTCCATCTAGCGTGAAA+TGG | + | chr3.1:78072451-78072470 | MS.gene06290:intron | 50.0% | |
| CAGTGCTTGAGGATGTGCAT+TGG | + | chr3.1:78072009-78072028 | MS.gene06290:CDS | 50.0% | |
| CGAGAGTGAGAAGAGAACGA+CGG | - | chr3.1:78071197-78071216 | None:intergenic | 50.0% | |
| CGTTCTCTTCTCACTCTCGA+CGG | + | chr3.1:78071198-78071217 | MS.gene06290:CDS | 50.0% | |
| GAAACTGGACGACCTTGCAA+TGG | - | chr3.1:78073177-78073196 | None:intergenic | 50.0% | |
| TACGACCTCGAATGGACCAA+CGG | + | chr3.1:78073115-78073134 | MS.gene06290:CDS | 50.0% | |
| TCACTCGAAGGCCTGTTAAG+TGG | + | chr3.1:78071578-78071597 | MS.gene06290:CDS | 50.0% | |
| TCCATCTAGCGTGAAATGGC+AGG | + | chr3.1:78072455-78072474 | MS.gene06290:intron | 50.0% | |
| TCGTCGTTTACGACCTCGAA+TGG | + | chr3.1:78073107-78073126 | MS.gene06290:CDS | 50.0% | |
| TTCGATGGCTGAGCCAATTC+CGG | + | chr3.1:78072955-78072974 | MS.gene06290:CDS | 50.0% | |
| ! | GGGATGGAGAGTGTACATGA+AGG | - | chr3.1:78071404-78071423 | None:intergenic | 50.0% |
| ! | GGGATGGAGAGTGTAGATGA+AGG | - | chr3.1:78073146-78073165 | None:intergenic | 50.0% |
| ! | TTATGGTACGACTGGCCCAA+TGG | + | chr3.1:78071304-78071323 | MS.gene06290:CDS | 50.0% |
| !! | CTCCGTCCTAATTGGCTTGA+TGG | + | chr3.1:78071466-78071485 | MS.gene06290:CDS | 50.0% |
| !! | CTTGAGGGCGCTACGTATTT+AGG | + | chr3.1:78073223-78073242 | MS.gene06290:CDS | 50.0% |
| !! | GTAGATGAAGGAGGTACCGT+TGG | - | chr3.1:78073134-78073153 | None:intergenic | 50.0% |
| ACCTTGCAATGGCGGTCTGA+GGG | - | chr3.1:78073166-78073185 | None:intergenic | 55.0% | |
| ACTGGACGACCTTGCAATGG+CGG | - | chr3.1:78073174-78073193 | None:intergenic | 55.0% | |
| CACTGCTTGAGGAACCGCAT+TGG | + | chr3.1:78073730-78073749 | MS.gene06290:CDS | 55.0% | |
| CATGGACAACCTTGCAGTGG+CGG | - | chr3.1:78071432-78071451 | None:intergenic | 55.0% | |
| CTGAGCCAATTCCGGCTGTT+TGG | + | chr3.1:78072963-78072982 | MS.gene06290:CDS | 55.0% | |
| GCTAGATGGACGTGATCACG+AGG | - | chr3.1:78072445-78072464 | None:intergenic | 55.0% | |
| TCTCTTCTCACTCTCGACGG+CGG | + | chr3.1:78071201-78071220 | MS.gene06290:CDS | 55.0% | |
| TGAGGTTGGAGCAGTGCTTG+AGG | + | chr3.1:78071998-78072017 | MS.gene06290:CDS | 55.0% | |
| ! | AGGTACCGTTGGTCCATTCG+AGG | - | chr3.1:78073123-78073142 | None:intergenic | 55.0% |
| ! | GCCTGCCATTTCACGCTAGA+TGG | - | chr3.1:78072459-78072478 | None:intergenic | 55.0% |
| ! | GCTTGAGGATGTGCATTGGC+AGG | + | chr3.1:78072013-78072032 | MS.gene06290:CDS | 55.0% |
| !! | TGAGGTTGGAGCACTGCTTG+AGG | + | chr3.1:78073719-78073738 | MS.gene06290:CDS | 55.0% |
| AACTGCTCCGGCCAAACAGC+CGG | - | chr3.1:78072977-78072996 | None:intergenic | 60.0% | |
| GACAACCTTGCAGTGGCGGT+CGG | - | chr3.1:78071428-78071447 | None:intergenic | 60.0% | |
| GACCTTGCAATGGCGGTCTG+AGG | - | chr3.1:78073167-78073186 | None:intergenic | 60.0% | |
| GAGCGGAGTCCTGCAGAAAG+TGG | + | chr3.1:78073021-78073040 | MS.gene06290:CDS | 60.0% | |
| GCCAATTCCGGCTGTTTGGC+CGG | + | chr3.1:78072967-78072986 | MS.gene06290:CDS | 60.0% | |
| TCCCTCAGACCGCCATTGCA+AGG | + | chr3.1:78073162-78073181 | MS.gene06290:CDS | 60.0% | |
| TCCGGCCAAACAGCCGGAAT+TGG | - | chr3.1:78072971-78072990 | None:intergenic | 60.0% | |
| TGCAATGGCGGTCTGAGGGA+TGG | - | chr3.1:78073162-78073181 | None:intergenic | 60.0% | |
| TGCTGCTGCTGCTGCTGCAT+AGG | + | chr3.1:78072130-78072149 | MS.gene06290:intron | 60.0% | |
| ! | GCTTGAGGAACCGCATTGGC+AGG | + | chr3.1:78073734-78073753 | MS.gene06290:CDS | 60.0% |
| AACCTTGCAGTGGCGGTCGG+AGG | - | chr3.1:78071425-78071444 | None:intergenic | 65.0% | |
| AACTGCTCCGGCCAAGCTGC+CGG | - | chr3.1:78071235-78071254 | None:intergenic | 65.0% | |
| ACCTTGCAGTGGCGGTCGGA+GGG | - | chr3.1:78071424-78071443 | None:intergenic | 65.0% | |
| CGGAGCCAGTTCCGGCAGCT+TGG | + | chr3.1:78071221-78071240 | MS.gene06290:CDS | 70.0% | |
| CTCGACGGCGGAGCCAGTTC+CGG | + | chr3.1:78071213-78071232 | MS.gene06290:CDS | 70.0% | |
| GCCAGTTCCGGCAGCTTGGC+CGG | + | chr3.1:78071225-78071244 | MS.gene06290:CDS | 70.0% | |
| TCCCTCCGACCGCCACTGCA+AGG | + | chr3.1:78071420-78071439 | MS.gene06290:CDS | 70.0% | |
| TCCGGCCAAGCTGCCGGAAC+TGG | - | chr3.1:78071229-78071248 | None:intergenic | 70.0% | |
| TGCAGTGGCGGTCGGAGGGA+TGG | - | chr3.1:78071420-78071439 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78071148 | 78073866 | 78071148 | ID=MS.gene06290 |
| chr3.1 | mRNA | 78071148 | 78073866 | 78071148 | ID=MS.gene06290.t1;Parent=MS.gene06290 |
| chr3.1 | exon | 78071148 | 78071613 | 78071148 | ID=MS.gene06290.t1.exon1;Parent=MS.gene06290.t1 |
| chr3.1 | CDS | 78071148 | 78071613 | 78071148 | ID=cds.MS.gene06290.t1;Parent=MS.gene06290.t1 |
| chr3.1 | exon | 78071973 | 78072069 | 78071973 | ID=MS.gene06290.t1.exon2;Parent=MS.gene06290.t1 |
| chr3.1 | CDS | 78071973 | 78072069 | 78071973 | ID=cds.MS.gene06290.t1;Parent=MS.gene06290.t1 |
| chr3.1 | exon | 78072877 | 78073355 | 78072877 | ID=MS.gene06290.t1.exon3;Parent=MS.gene06290.t1 |
| chr3.1 | CDS | 78072877 | 78073355 | 78072877 | ID=cds.MS.gene06290.t1;Parent=MS.gene06290.t1 |
| chr3.1 | exon | 78073688 | 78073866 | 78073688 | ID=MS.gene06290.t1.exon4;Parent=MS.gene06290.t1 |
| chr3.1 | CDS | 78073688 | 78073866 | 78073688 | ID=cds.MS.gene06290.t1;Parent=MS.gene06290.t1 |
| Gene Sequence |
| Protein sequence |
