Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238320 | KEH36815.1 | 69.811 | 106 | 19 | 2 | 161 | 266 | 103 | 195 | 6.57e-30 | 121 |
| Msa0238320 | KEH36815.1 | 71.287 | 101 | 21 | 1 | 8 | 108 | 11 | 103 | 2.51e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238320 | A0A072VF92 | 69.811 | 106 | 19 | 2 | 161 | 266 | 103 | 195 | 3.14e-30 | 121 |
| Msa0238320 | A0A072VF92 | 71.287 | 101 | 21 | 1 | 8 | 108 | 11 | 103 | 1.20e-30 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0238320 | 0.800011 | 1.760546e-48 | -8.615850e-47 |
| Msa0043980 | Msa0238320 | 0.814959 | 1.181181e-51 | -8.615850e-47 |
| Msa0084080 | Msa0238320 | 0.800142 | 1.655308e-48 | -8.615850e-47 |
| Msa0084380 | Msa0238320 | 0.817982 | 2.486446e-52 | -8.615850e-47 |
| Msa0090360 | Msa0238320 | 0.833090 | 6.512643e-56 | -8.615850e-47 |
| Msa0095560 | Msa0238320 | 0.818891 | 1.546993e-52 | -8.615850e-47 |
| Msa0096240 | Msa0238320 | 0.804067 | 2.580720e-49 | -8.615850e-47 |
| Msa0120040 | Msa0238320 | -0.808966 | 2.388540e-50 | -8.615850e-47 |
| Msa0122590 | Msa0238320 | 0.807178 | 5.737811e-50 | -8.615850e-47 |
| Msa0137840 | Msa0238320 | 0.823426 | 1.393790e-53 | -8.615850e-47 |
| Msa0140780 | Msa0238320 | 0.800239 | 1.581781e-48 | -8.615850e-47 |
| Msa0150820 | Msa0238320 | 0.802738 | 4.865386e-49 | -8.615850e-47 |
| Msa0151180 | Msa0238320 | 0.816436 | 5.534876e-52 | -8.615850e-47 |
| Msa0170570 | Msa0238320 | 0.801417 | 9.093268e-49 | -8.615850e-47 |
| Msa0171120 | Msa0238320 | 0.819263 | 1.272775e-52 | -8.615850e-47 |
| Msa0178570 | Msa0238320 | 0.807695 | 4.457638e-50 | -8.615850e-47 |
| Msa0184040 | Msa0238320 | 0.835097 | 2.046169e-56 | -8.615850e-47 |
| Msa0188830 | Msa0238320 | 0.813088 | 3.055456e-51 | -8.615850e-47 |
| Msa0205230 | Msa0238320 | 0.814629 | 1.397884e-51 | -8.615850e-47 |
| Msa0205510 | Msa0238320 | 0.800067 | 1.714499e-48 | -8.615850e-47 |
| Msa0206010 | Msa0238320 | 0.814072 | 1.855525e-51 | -8.615850e-47 |
| Msa0210450 | Msa0238320 | 0.812181 | 4.825113e-51 | -8.615850e-47 |
| Msa0216240 | Msa0238320 | 0.818515 | 1.882785e-52 | -8.615850e-47 |
| Msa0220440 | Msa0238320 | 0.806083 | 9.773279e-50 | -8.615850e-47 |
| Msa0238320 | Msa0243100 | 0.814964 | 1.177905e-51 | -8.615850e-47 |
| Msa0238320 | Msa0249200 | 0.802390 | 5.740440e-49 | -8.615850e-47 |
| Msa0238320 | Msa0270100 | 0.803213 | 3.880334e-49 | -8.615850e-47 |
| Msa0238320 | Msa0275720 | 0.834218 | 3.402536e-56 | -8.615850e-47 |
| Msa0238320 | Msa0280090 | 0.801710 | 7.918972e-49 | -8.615850e-47 |
| Msa0238320 | Msa0287410 | 0.810911 | 9.106530e-51 | -8.615850e-47 |
| Msa0238320 | Msa0287650 | 0.829681 | 4.492175e-55 | -8.615850e-47 |
| Msa0238320 | Msa0291500 | 0.807085 | 6.003783e-50 | -8.615850e-47 |
| Msa0238320 | Msa0316240 | 0.856262 | 3.622784e-62 | -8.615850e-47 |
| Msa0238320 | Msa0326110 | 0.815567 | 8.654764e-52 | -8.615850e-47 |
| Msa0238320 | Msa0334360 | 0.818503 | 1.895233e-52 | -8.615850e-47 |
| Msa0238320 | Msa0345970 | 0.813813 | 2.116560e-51 | -8.615850e-47 |
| Msa0238320 | Msa0363790 | 0.806040 | 9.977428e-50 | -8.615850e-47 |
| Msa0238320 | Msa0379640 | 0.803758 | 2.992278e-49 | -8.615850e-47 |
| Msa0238320 | Msa0388950 | 0.818402 | 1.997023e-52 | -8.615850e-47 |
| Msa0238320 | Msa0426900 | 0.807130 | 5.873776e-50 | -8.615850e-47 |
| Msa0238320 | Msa0455760 | 0.803820 | 2.904911e-49 | -8.615850e-47 |
| Msa0238320 | Msa0479970 | 0.820600 | 6.297241e-53 | -8.615850e-47 |
| Msa0238320 | Msa0481530 | 0.825932 | 3.578335e-54 | -8.615850e-47 |
| Msa0238320 | Msa0484780 | 0.815229 | 1.029112e-51 | -8.615850e-47 |
| Msa0238320 | Msa0498650 | 0.805271 | 1.447086e-49 | -8.615850e-47 |
| Msa0238320 | Msa0501450 | 0.827025 | 1.965071e-54 | -8.615850e-47 |
| Msa0238320 | Msa0502880 | 0.804765 | 1.846471e-49 | -8.615850e-47 |
| Msa0238320 | Msa0529890 | 0.822091 | 2.850703e-53 | -8.615850e-47 |
| Msa0238320 | Msa0545070 | 0.805735 | 1.156450e-49 | -8.615850e-47 |
| Msa0238320 | Msa0561230 | 0.812059 | 5.129228e-51 | -8.615850e-47 |
| Msa0238320 | Msa0577500 | 0.803294 | 3.733823e-49 | -8.615850e-47 |
| Msa0238320 | Msa0578860 | 0.819447 | 1.155896e-52 | -8.615850e-47 |
| Msa0238320 | Msa0585560 | 0.821365 | 4.196197e-53 | -8.615850e-47 |
| Msa0238320 | Msa0607910 | 0.800538 | 1.374932e-48 | -8.615850e-47 |
| Msa0238320 | Msa0610430 | 0.808621 | 2.830725e-50 | -8.615850e-47 |
| Msa0238320 | Msa0617640 | 0.818223 | 2.192552e-52 | -8.615850e-47 |
| Msa0238320 | Msa0625720 | 0.820104 | 8.181548e-53 | -8.615850e-47 |
| Msa0238320 | Msa0638070 | 0.804041 | 2.612416e-49 | -8.615850e-47 |
| Msa0238320 | Msa0648880 | 0.802342 | 5.871851e-49 | -8.615850e-47 |
| Msa0238320 | Msa0654720 | 0.810128 | 1.344775e-50 | -8.615850e-47 |
| Msa0238320 | Msa0657580 | 0.801204 | 1.005393e-48 | -8.615850e-47 |
| Msa0238320 | Msa0663390 | 0.823039 | 1.716158e-53 | -8.615850e-47 |
| Msa0238320 | Msa0669440 | 0.806838 | 6.772000e-50 | -8.615850e-47 |
| Msa0238320 | Msa0673460 | 0.803170 | 3.961569e-49 | -8.615850e-47 |
| Msa0238320 | Msa0679710 | 0.807360 | 5.251007e-50 | -8.615850e-47 |
| Msa0238320 | Msa0691380 | 0.808919 | 2.444255e-50 | -8.615850e-47 |
| Msa0238320 | Msa0698360 | 0.806942 | 6.437934e-50 | -8.615850e-47 |
| Msa0238320 | Msa0698540 | 0.810398 | 1.176014e-50 | -8.615850e-47 |
| Msa0238320 | Msa0715700 | 0.805216 | 1.485788e-49 | -8.615850e-47 |
| Msa0238320 | Msa0740510 | 0.814657 | 1.378170e-51 | -8.615850e-47 |
| Msa0238320 | Msa0745790 | 0.807355 | 5.262512e-50 | -8.615850e-47 |
| Msa0238320 | Msa0750880 | 0.800520 | 1.386817e-48 | -8.615850e-47 |
| Msa0238320 | Msa0769920 | 0.807328 | 5.334718e-50 | -8.615850e-47 |
| Msa0238320 | Msa0773590 | 0.800824 | 1.202394e-48 | -8.615850e-47 |
| Msa0238320 | Msa0790510 | 0.811349 | 7.320496e-51 | -8.615850e-47 |
| Msa0238320 | Msa0808270 | 0.803275 | 3.767393e-49 | -8.615850e-47 |
| Msa0238320 | Msa0820770 | 0.817447 | 3.281631e-52 | -8.615850e-47 |
| Msa0238320 | Msa0832150 | 0.801688 | 8.001738e-49 | -8.615850e-47 |
| Msa0238320 | Msa0832340 | 0.809095 | 2.240773e-50 | -8.615850e-47 |
| Msa0238320 | Msa0861090 | 0.812878 | 3.395884e-51 | -8.615850e-47 |
| Msa0238320 | Msa0866410 | 0.803212 | 3.883473e-49 | -8.615850e-47 |
| Msa0238320 | Msa0898750 | 0.813750 | 2.184952e-51 | -8.615850e-47 |
| Msa0238320 | Msa0928130 | 0.813519 | 2.456304e-51 | -8.615850e-47 |
| Msa0238320 | Msa0933230 | 0.813203 | 2.881932e-51 | -8.615850e-47 |
| Msa0238320 | Msa0933310 | 0.817096 | 3.937356e-52 | -8.615850e-47 |
| Msa0238320 | Msa0964310 | 0.800096 | 1.691695e-48 | -8.615850e-47 |
| Msa0238320 | Msa0969520 | 0.818692 | 1.716751e-52 | -8.615850e-47 |
| Msa0238320 | Msa0971090 | 0.807911 | 4.010392e-50 | -8.615850e-47 |
| Msa0238320 | Msa0979100 | 0.809595 | 1.750711e-50 | -8.615850e-47 |
| Msa0238320 | Msa0980880 | 0.807416 | 5.108586e-50 | -8.615850e-47 |
| Msa0238320 | Msa0999100 | 0.818561 | 1.838185e-52 | -8.615850e-47 |
| Msa0238320 | Msa1010350 | 0.805793 | 1.124577e-49 | -8.615850e-47 |
| Msa0238320 | Msa1023920 | 0.835547 | 1.574778e-56 | -8.615850e-47 |
| Msa0238320 | Msa1082500 | 0.817873 | 2.630678e-52 | -8.615850e-47 |
| Msa0238320 | Msa1098400 | 0.803463 | 3.444544e-49 | -8.615850e-47 |
| Msa0238320 | Msa1098420 | 0.809299 | 2.026225e-50 | -8.615850e-47 |
| Msa0238320 | Msa1107900 | 0.833162 | 6.249046e-56 | -8.615850e-47 |
| Msa0238320 | Msa1109680 | 0.806314 | 8.735126e-50 | -8.615850e-47 |
| Msa0238320 | Msa1144890 | 0.809867 | 1.530333e-50 | -8.615850e-47 |
| Msa0238320 | Msa1151720 | 0.833434 | 5.344377e-56 | -8.615850e-47 |
| Msa0238320 | Msa1154280 | 0.803427 | 3.504938e-49 | -8.615850e-47 |
| Msa0238320 | Msa1172670 | 0.803031 | 4.232074e-49 | -8.615850e-47 |
| Msa0238320 | Msa1173100 | 0.801350 | 9.385277e-49 | -8.615850e-47 |
| Msa0238320 | Msa1214890 | 0.806967 | 6.359897e-50 | -8.615850e-47 |
| Msa0238320 | Msa1233890 | 0.800327 | 1.518283e-48 | -8.615850e-47 |
| Msa0238320 | Msa1250890 | 0.815294 | 9.949472e-52 | -8.615850e-47 |
| Msa0238320 | Msa1253020 | 0.801166 | 1.023429e-48 | -8.615850e-47 |
| Msa0238320 | Msa1305340 | 0.805629 | 1.217193e-49 | -8.615850e-47 |
| Msa0238320 | Msa1305660 | 0.823049 | 1.707439e-53 | -8.615850e-47 |
| Msa0238320 | Msa1306840 | 0.805924 | 1.055171e-49 | -8.615850e-47 |
| Msa0238320 | Msa1309030 | 0.804394 | 2.206300e-49 | -8.615850e-47 |
| Msa0238320 | Msa1313140 | 0.819799 | 9.604343e-53 | -8.615850e-47 |
| Msa0238320 | Msa1327550 | 0.814497 | 1.495276e-51 | -8.615850e-47 |
| Msa0238320 | Msa1327680 | 0.815668 | 8.215462e-52 | -8.615850e-47 |
| Msa0238320 | Msa1331910 | 0.800740 | 1.250662e-48 | -8.615850e-47 |
| Msa0238320 | Msa1342900 | 0.800351 | 1.501115e-48 | -8.615850e-47 |
| Msa0238320 | Msa1353470 | 0.800431 | 1.446022e-48 | -8.615850e-47 |
| Msa0238320 | Msa1353980 | 0.826226 | 3.047356e-54 | -8.615850e-47 |
| Msa0238320 | Msa1359040 | 0.813975 | 1.949692e-51 | -8.615850e-47 |
| Msa0238320 | Msa1385670 | 0.807765 | 4.307661e-50 | -8.615850e-47 |
| Msa0238320 | Msa1392260 | 0.812211 | 4.751382e-51 | -8.615850e-47 |
| Msa0238320 | Msa1397120 | 0.805081 | 1.585285e-49 | -8.615850e-47 |
| Msa0238320 | Msa1403890 | 0.809235 | 2.091345e-50 | -8.615850e-47 |
| Msa0238320 | Msa1407580 | 0.802994 | 4.307813e-49 | -8.615850e-47 |
| Msa0238320 | Msa1411020 | 0.808022 | 3.797571e-50 | -8.615850e-47 |
| Msa0238320 | Msa1417200 | 0.826372 | 2.812224e-54 | -8.615850e-47 |
| Msa0238320 | Msa1423870 | 0.812616 | 3.875451e-51 | -8.615850e-47 |
| Msa0238320 | Msa1424290 | 0.804815 | 1.802214e-49 | -8.615850e-47 |
| Msa0238320 | Msa1424450 | 0.801440 | 8.995208e-49 | -8.615850e-47 |
| Msa0238320 | Msa1427230 | 0.805474 | 1.311888e-49 | -8.615850e-47 |
| Msa0238320 | Msa1429900 | 0.802313 | 5.951616e-49 | -8.615850e-47 |
| Msa0238320 | Msa1433390 | 0.832312 | 1.015449e-55 | -8.615850e-47 |
| Msa0238320 | Msa1434350 | 0.806734 | 7.124845e-50 | -8.615850e-47 |
| Msa0238320 | Msa1439320 | 0.809233 | 2.093325e-50 | -8.615850e-47 |
| Msa0238320 | Msa1443850 | 0.816588 | 5.118603e-52 | -8.615850e-47 |
| Msa0238320 | Msa1452240 | 0.804180 | 2.444947e-49 | -8.615850e-47 |
| Msa0238320 | Msa1466540 | 0.808016 | 3.808782e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238320 | MtrunA17_Chr2g0288061 | 71.287 | 101 | 21 | 1 | 8 | 108 | 11 | 103 | 3.34e-34 | 122 |
| Msa0238320 | MtrunA17_Chr2g0288061 | 68.367 | 98 | 18 | 2 | 161 | 258 | 103 | 187 | 3.93e-28 | 106 |
| Msa0238320 | MtrunA17_Chr2g0287401 | 52.703 | 74 | 35 | 0 | 1 | 74 | 2 | 75 | 7.74e-16 | 73.2 |
| Msa0238320 | MtrunA17_Chr1g0170131 | 48.529 | 68 | 31 | 1 | 1 | 68 | 1 | 64 | 3.16e-15 | 72.8 |
| Msa0238320 | MtrunA17_Chr2g0286581 | 61.111 | 54 | 21 | 0 | 1 | 54 | 12 | 65 | 6.54e-15 | 71.2 |
| Msa0238320 | MtrunA17_Chr2g0287311 | 50.000 | 74 | 37 | 0 | 1 | 74 | 12 | 85 | 1.07e-14 | 71.2 |
| Msa0238320 | MtrunA17_Chr2g0287421 | 61.111 | 54 | 21 | 0 | 1 | 54 | 2 | 55 | 2.40e-14 | 69.3 |
| Msa0238320 | MtrunA17_Chr2g0287321 | 52.055 | 73 | 35 | 0 | 1 | 73 | 11 | 83 | 6.03e-14 | 68.2 |
| Msa0238320 | MtrunA17_Chr2g0287371 | 52.344 | 128 | 47 | 1 | 1 | 128 | 5 | 118 | 2.45e-13 | 67.8 |
| Msa0238320 | MtrunA17_Chr1g0156951 | 32.000 | 275 | 120 | 10 | 1 | 260 | 1 | 223 | 8.98e-13 | 65.9 |
| Msa0238320 | MtrunA17_Chr2g0287351 | 40.404 | 99 | 48 | 2 | 1 | 90 | 1 | 97 | 9.31e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCGAAAAGAAGAGGATT+TGG | 0.329420 | 2_2:+11765258 | Msa0238320:CDS |
| AACGGACCTGCAGAATGTTT+TGG | 0.341546 | 2_2:-11765783 | None:intergenic |
| GGAAGACTTTAATCGTTTAA+CGG | 0.443117 | 2_2:-11765230 | None:intergenic |
| CATTCATGACTTGAGATAAA+CGG | 0.459596 | 2_2:-11765801 | None:intergenic |
| CGCTTGGTTCAACTCTAGAA+AGG | 0.462208 | 2_2:-11765090 | None:intergenic |
| GGCGCTGATGGCGGAAGCCA+CGG | 0.464104 | 2_2:+11765021 | None:intergenic |
| TGATGAAGAAGAGGAAGATG+AGG | 0.469022 | 2_2:+11765318 | Msa0238320:CDS |
| CGAGTTGCTTCGAAAAGAAG+AGG | 0.487698 | 2_2:+11765252 | Msa0238320:CDS |
| CAAGCGTTTATCTGCAATTG+AGG | 0.488368 | 2_2:+11765107 | Msa0238320:CDS |
| ATTTCGATAATCAGATCCTC+CGG | 0.496089 | 2_2:-11765067 | None:intergenic |
| CTCAATTGCAGATAAACGCT+TGG | 0.514934 | 2_2:-11765106 | None:intergenic |
| GTGTCTCCAAAACATTCTGC+AGG | 0.545478 | 2_2:+11765777 | Msa0238320:CDS |
| TATTGAGTTTCTGCGGCAGA+AGG | 0.548094 | 2_2:+11765654 | Msa0238320:CDS |
| TGAAGAAGAGGAAGATGAGG+AGG | 0.549099 | 2_2:+11765321 | Msa0238320:CDS |
| GCAGAAGGAGGCAGTTCCGT+TGG | 0.553372 | 2_2:+11765669 | Msa0238320:CDS |
| TGAAGAAGAGGAGAAAGAAT+CGG | 0.556114 | 2_2:+11765618 | Msa0238320:CDS |
| GTCACAGAACGCGATACTCC+CGG | 0.563110 | 2_2:+11765048 | Msa0238320:CDS |
| TGGTGGTGGTTCTGAAGAAG+AGG | 0.571049 | 2_2:+11765606 | Msa0238320:CDS |
| CGAAAAGAAGAGGATTTGGA+TGG | 0.572187 | 2_2:+11765262 | Msa0238320:CDS |
| AATTGAGGTGCGTATGCAAA+TGG | 0.587049 | 2_2:+11765122 | Msa0238320:CDS |
| TGAGTTTCTGCGGCAGAAGG+AGG | 0.614751 | 2_2:+11765657 | Msa0238320:CDS |
| CGCGTTCTGTGACTCCGCCG+TGG | 0.622877 | 2_2:-11765038 | None:intergenic |
| TTTCGATAATCAGATCCTCC+GGG | 0.622988 | 2_2:-11765066 | None:intergenic |
| CAGAGATGAAATGCAAATAG+CGG | 0.644769 | 2_2:+11765741 | Msa0238320:CDS |
| GTTGATGAAGACAATGGTGG+TGG | 0.645971 | 2_2:+11765592 | Msa0238320:CDS |
| AAGTAGTTATTGAGTTTCTG+CGG | 0.650429 | 2_2:+11765647 | Msa0238320:CDS |
| AGATGAAATGCAAATAGCGG+AGG | 0.653702 | 2_2:+11765744 | Msa0238320:CDS |
| GAGAATGTTGATGAAGACAA+TGG | 0.662623 | 2_2:+11765586 | Msa0238320:CDS |
| TGAGGTGCGTATGCAAATGG+TGG | 0.665483 | 2_2:+11765125 | Msa0238320:CDS |
| AAGAGGAGAAAGAATCGGCG+TGG | 0.679826 | 2_2:+11765623 | Msa0238320:CDS |
| GCTGATGGCGGAAGCCACGG+CGG | 0.707073 | 2_2:+11765024 | None:intergenic |
| AATGTTGATGAAGACAATGG+TGG | 0.715735 | 2_2:+11765589 | Msa0238320:CDS |
| ACAGAACGCGATACTCCCGG+AGG | 0.809853 | 2_2:+11765051 | Msa0238320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTGAAGATTTTG+AGG | + | chr2_2:11765692-11765711 | Msa0238320:CDS | 15.0% |
| !!! | TAATTTTTTGAAGATTTTGA+GGG | + | chr2_2:11765693-11765712 | Msa0238320:CDS | 15.0% |
| !!! | ATAATTTTTTGAAGATTTTG+AGG | + | chr2_2:11765692-11765711 | Msa0238320:CDS | 15.0% |
| !!! | TAATTTTTTGAAGATTTTGA+GGG | + | chr2_2:11765693-11765712 | Msa0238320:CDS | 15.0% |
| !!! | TGTTTTTGATCGTTATTTAT+TGG | + | chr2_2:11765156-11765175 | Msa0238320:CDS | 20.0% |
| !! | ATCTTCAAAAAATTATCCAA+CGG | - | chr2_2:11765688-11765707 | None:intergenic | 20.0% |
| !!! | AATTTTTTGAAGATTTTGAG+GGG | + | chr2_2:11765694-11765713 | Msa0238320:CDS | 20.0% |
| !!! | TGTTTTTGATCGTTATTTAT+TGG | + | chr2_2:11765156-11765175 | Msa0238320:CDS | 20.0% |
| !! | ATCTTCAAAAAATTATCCAA+CGG | - | chr2_2:11765688-11765707 | None:intergenic | 20.0% |
| !!! | AATTTTTTGAAGATTTTGAG+GGG | + | chr2_2:11765694-11765713 | Msa0238320:CDS | 20.0% |
| GGAAGACTTTAATCGTTTAA+CGG | - | chr2_2:11765233-11765252 | None:intergenic | 30.0% | |
| AAGTAGTTATTGAGTTTCTG+CGG | + | chr2_2:11765647-11765666 | Msa0238320:CDS | 30.0% | |
| CATTCATGACTTGAGATAAA+CGG | - | chr2_2:11765804-11765823 | None:intergenic | 30.0% | |
| GGAAGACTTTAATCGTTTAA+CGG | - | chr2_2:11765233-11765252 | None:intergenic | 30.0% | |
| AAGTAGTTATTGAGTTTCTG+CGG | + | chr2_2:11765647-11765666 | Msa0238320:CDS | 30.0% | |
| CATTCATGACTTGAGATAAA+CGG | - | chr2_2:11765804-11765823 | None:intergenic | 30.0% | |
| ATTTCGATAATCAGATCCTC+CGG | - | chr2_2:11765070-11765089 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGATGAAG+AGG | + | chr2_2:11765291-11765310 | Msa0238320:CDS | 35.0% | |
| !! | AGAGGATTTTGATGAAGAAG+AGG | + | chr2_2:11765309-11765328 | Msa0238320:CDS | 35.0% |
| !! | TGAGGAGGAAAATTTTGATG+AGG | + | chr2_2:11765336-11765355 | Msa0238320:CDS | 35.0% |
| ! | GAGAATGTTGATGAAGACAA+TGG | + | chr2_2:11765586-11765605 | Msa0238320:CDS | 35.0% |
| ! | AATGTTGATGAAGACAATGG+TGG | + | chr2_2:11765589-11765608 | Msa0238320:CDS | 35.0% |
| TGAAGAAGAGGAGAAAGAAT+CGG | + | chr2_2:11765618-11765637 | Msa0238320:CDS | 35.0% | |
| CAGAGATGAAATGCAAATAG+CGG | + | chr2_2:11765741-11765760 | Msa0238320:CDS | 35.0% | |
| ATTTCGATAATCAGATCCTC+CGG | - | chr2_2:11765070-11765089 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGATGAAG+AGG | + | chr2_2:11765291-11765310 | Msa0238320:CDS | 35.0% | |
| !! | AGAGGATTTTGATGAAGAAG+AGG | + | chr2_2:11765309-11765328 | Msa0238320:CDS | 35.0% |
| !! | TGAGGAGGAAAATTTTGATG+AGG | + | chr2_2:11765336-11765355 | Msa0238320:CDS | 35.0% |
| ! | GAGAATGTTGATGAAGACAA+TGG | + | chr2_2:11765586-11765605 | Msa0238320:CDS | 35.0% |
| ! | AATGTTGATGAAGACAATGG+TGG | + | chr2_2:11765589-11765608 | Msa0238320:CDS | 35.0% |
| TGAAGAAGAGGAGAAAGAAT+CGG | + | chr2_2:11765618-11765637 | Msa0238320:CDS | 35.0% | |
| CAGAGATGAAATGCAAATAG+CGG | + | chr2_2:11765741-11765760 | Msa0238320:CDS | 35.0% | |
| TTTCGATAATCAGATCCTCC+GGG | - | chr2_2:11765069-11765088 | None:intergenic | 40.0% | |
| CTCAATTGCAGATAAACGCT+TGG | - | chr2_2:11765109-11765128 | None:intergenic | 40.0% | |
| CAAGCGTTTATCTGCAATTG+AGG | + | chr2_2:11765107-11765126 | Msa0238320:CDS | 40.0% | |
| AATTGAGGTGCGTATGCAAA+TGG | + | chr2_2:11765122-11765141 | Msa0238320:CDS | 40.0% | |
| ! | CTCTTCTTTTCGAAGCAACT+CGG | - | chr2_2:11765254-11765273 | None:intergenic | 40.0% |
| GCTTCGAAAAGAAGAGGATT+TGG | + | chr2_2:11765258-11765277 | Msa0238320:CDS | 40.0% | |
| CGAAAAGAAGAGGATTTGGA+TGG | + | chr2_2:11765262-11765281 | Msa0238320:CDS | 40.0% | |
| TGATGAAGAAGAGGAAGATG+AGG | + | chr2_2:11765318-11765337 | Msa0238320:CDS | 40.0% | |
| AGATGAAATGCAAATAGCGG+AGG | + | chr2_2:11765744-11765763 | Msa0238320:CDS | 40.0% | |
| TTTCGATAATCAGATCCTCC+GGG | - | chr2_2:11765069-11765088 | None:intergenic | 40.0% | |
| CTCAATTGCAGATAAACGCT+TGG | - | chr2_2:11765109-11765128 | None:intergenic | 40.0% | |
| CAAGCGTTTATCTGCAATTG+AGG | + | chr2_2:11765107-11765126 | Msa0238320:CDS | 40.0% | |
| AATTGAGGTGCGTATGCAAA+TGG | + | chr2_2:11765122-11765141 | Msa0238320:CDS | 40.0% | |
| ! | CTCTTCTTTTCGAAGCAACT+CGG | - | chr2_2:11765254-11765273 | None:intergenic | 40.0% |
| GCTTCGAAAAGAAGAGGATT+TGG | + | chr2_2:11765258-11765277 | Msa0238320:CDS | 40.0% | |
| CGAAAAGAAGAGGATTTGGA+TGG | + | chr2_2:11765262-11765281 | Msa0238320:CDS | 40.0% | |
| TGATGAAGAAGAGGAAGATG+AGG | + | chr2_2:11765318-11765337 | Msa0238320:CDS | 40.0% | |
| AGATGAAATGCAAATAGCGG+AGG | + | chr2_2:11765744-11765763 | Msa0238320:CDS | 40.0% | |
| ! | CGCTTGGTTCAACTCTAGAA+AGG | - | chr2_2:11765093-11765112 | None:intergenic | 45.0% |
| CGAGTTGCTTCGAAAAGAAG+AGG | + | chr2_2:11765252-11765271 | Msa0238320:CDS | 45.0% | |
| TGAAGAAGAGGAAGATGAGG+AGG | + | chr2_2:11765321-11765340 | Msa0238320:CDS | 45.0% | |
| ! | GTTGATGAAGACAATGGTGG+TGG | + | chr2_2:11765592-11765611 | Msa0238320:CDS | 45.0% |
| TATTGAGTTTCTGCGGCAGA+AGG | + | chr2_2:11765654-11765673 | Msa0238320:CDS | 45.0% | |
| GTGTCTCCAAAACATTCTGC+AGG | + | chr2_2:11765777-11765796 | Msa0238320:CDS | 45.0% | |
| ! | AACGGACCTGCAGAATGTTT+TGG | - | chr2_2:11765786-11765805 | None:intergenic | 45.0% |
| ! | CGCTTGGTTCAACTCTAGAA+AGG | - | chr2_2:11765093-11765112 | None:intergenic | 45.0% |
| CGAGTTGCTTCGAAAAGAAG+AGG | + | chr2_2:11765252-11765271 | Msa0238320:CDS | 45.0% | |
| TGAAGAAGAGGAAGATGAGG+AGG | + | chr2_2:11765321-11765340 | Msa0238320:CDS | 45.0% | |
| ! | GTTGATGAAGACAATGGTGG+TGG | + | chr2_2:11765592-11765611 | Msa0238320:CDS | 45.0% |
| TATTGAGTTTCTGCGGCAGA+AGG | + | chr2_2:11765654-11765673 | Msa0238320:CDS | 45.0% | |
| GTGTCTCCAAAACATTCTGC+AGG | + | chr2_2:11765777-11765796 | Msa0238320:CDS | 45.0% | |
| ! | AACGGACCTGCAGAATGTTT+TGG | - | chr2_2:11765786-11765805 | None:intergenic | 45.0% |
| TGAGGTGCGTATGCAAATGG+TGG | + | chr2_2:11765125-11765144 | Msa0238320:CDS | 50.0% | |
| !! | TGGTGGTGGTTCTGAAGAAG+AGG | + | chr2_2:11765606-11765625 | Msa0238320:CDS | 50.0% |
| AAGAGGAGAAAGAATCGGCG+TGG | + | chr2_2:11765623-11765642 | Msa0238320:CDS | 50.0% | |
| TGAGGTGCGTATGCAAATGG+TGG | + | chr2_2:11765125-11765144 | Msa0238320:CDS | 50.0% | |
| !! | TGGTGGTGGTTCTGAAGAAG+AGG | + | chr2_2:11765606-11765625 | Msa0238320:CDS | 50.0% |
| AAGAGGAGAAAGAATCGGCG+TGG | + | chr2_2:11765623-11765642 | Msa0238320:CDS | 50.0% | |
| GTCACAGAACGCGATACTCC+CGG | + | chr2_2:11765048-11765067 | Msa0238320:CDS | 55.0% | |
| TGAGTTTCTGCGGCAGAAGG+AGG | + | chr2_2:11765657-11765676 | Msa0238320:CDS | 55.0% | |
| GTCACAGAACGCGATACTCC+CGG | + | chr2_2:11765048-11765067 | Msa0238320:CDS | 55.0% | |
| TGAGTTTCTGCGGCAGAAGG+AGG | + | chr2_2:11765657-11765676 | Msa0238320:CDS | 55.0% | |
| ACAGAACGCGATACTCCCGG+AGG | + | chr2_2:11765051-11765070 | Msa0238320:CDS | 60.0% | |
| GCAGAAGGAGGCAGTTCCGT+TGG | + | chr2_2:11765669-11765688 | Msa0238320:CDS | 60.0% | |
| ACAGAACGCGATACTCCCGG+AGG | + | chr2_2:11765051-11765070 | Msa0238320:CDS | 60.0% | |
| GCAGAAGGAGGCAGTTCCGT+TGG | + | chr2_2:11765669-11765688 | Msa0238320:CDS | 60.0% | |
| CGCGTTCTGTGACTCCGCCG+TGG | - | chr2_2:11765041-11765060 | None:intergenic | 70.0% | |
| CGCGTTCTGTGACTCCGCCG+TGG | - | chr2_2:11765041-11765060 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11765028 | 11765828 | 11765028 | ID=Msa0238320;Name=Msa0238320 |
| chr2_2 | mRNA | 11765028 | 11765828 | 11765028 | ID=Msa0238320-mRNA-1;Parent=Msa0238320;Name=Msa0238320-mRNA-1;_AED=0.06;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|266 |
| chr2_2 | exon | 11765028 | 11765828 | 11765028 | ID=Msa0238320-mRNA-1:exon:5032;Parent=Msa0238320-mRNA-1 |
| chr2_2 | CDS | 11765028 | 11765828 | 11765028 | ID=Msa0238320-mRNA-1:cds;Parent=Msa0238320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
