AlfalfaGEDB | Msa0797620

M. sativa cultivar zhongmu-4 / Msa0797620

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797620	XP_003611545.1	92.530	415	28	2	1	414	1	413	0.0	751

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797620	sp\|Q9SY57\|P2A10_ARATH	46.135	414	194	6	3	405	4	399	4.38e-121	360

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797620	G7K2F2	92.530	415	28	2	1	414	1	413	0.0	751

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0797620	0.804186	2.437549e-49	-8.615850e-47
Msa0006700	Msa0797620	0.809358	1.968707e-50	-8.615850e-47
Msa0006820	Msa0797620	0.806271	8.919123e-50	-8.615850e-47
Msa0007230	Msa0797620	0.813213	2.867452e-51	-8.615850e-47
Msa0008330	Msa0797620	0.800409	1.460822e-48	-8.615850e-47
Msa0008850	Msa0797620	0.858502	7.885882e-63	-8.615850e-47
Msa0011720	Msa0797620	0.811424	7.048869e-51	-8.615850e-47
Msa0017120	Msa0797620	0.823873	1.095514e-53	-8.615850e-47
Msa0030000	Msa0797620	0.842245	2.909090e-58	-8.615850e-47
Msa0030030	Msa0797620	0.815894	7.317253e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797620	MtrunA17_Chr5g0400931	92.530	415	28	2	1	414	1	413	0.0	751
Msa0797620	MtrunA17_Chr3g0135011	44.131	426	197	7	1	414	1	397	8.34e-118	348

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797620	AT1G10150.1	46.135	414	194	6	3	405	4	399	4.45e-122	360
Msa0797620	AT1G59510.1	42.714	398	178	9	14	406	15	367	5.64e-107	321
Msa0797620	AT3G49790.1	41.584	404	185	5	10	413	12	364	4.95e-98	297

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Find 73 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGATGTTTGTGATAAAG+AGG	0.428216	5_3:-9859695	Msa0797620:CDS
AATGGATTGCAATTGGGCTT+TGG	0.425168	5_3:-9859419	Msa0797620:CDS
AATTGCAATCCATTATGTGC+AGG	0.556385	5_3:+9859428	None:intergenic
AATTGCGAAATTATCGCGCT+CGG	0.597238	5_3:-9860349	Msa0797620:CDS
ACCTTAATCTTAGTTTCAAT+CGG	0.367438	5_3:-9860573	Msa0797620:CDS
AGAACAAGTCTCCTATTACT+AGG	0.493344	5_3:+9859628	None:intergenic
AGAATCGGGTTGTTCTGATT+TGG	0.353612	5_3:-9860070	Msa0797620:CDS
AGACTTGTTCTTGATGTGAC+TGG	0.473332	5_3:-9859616	Msa0797620:CDS
ATAAAGAGGATAAAGGTGGT+TGG	0.557867	5_3:-9859681	Msa0797620:CDS
ATAAGTGTGGTGAGCTGATT+GGG	0.457299	5_3:-9860008	Msa0797620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTCCGTAAAAGAAAGAAA+TGG	-	chr5_3:9859442-9859461	Msa0797620:CDS	30.0%
CCTTAATCTTAGTTTCAATC+GGG	-	chr5_3:9859466-9859485	Msa0797620:CDS	30.0%
TTTGCTAGGAATATTGTTCT+TGG	-	chr5_3:9859891-9859910	Msa0797620:CDS	30.0%
TTGCTAGGAATATTGTTCTT+GGG	-	chr5_3:9859892-9859911	Msa0797620:CDS	30.0%
AAGAGATGTTTGTGATAAAG+AGG	-	chr5_3:9860343-9860362	Msa0797620:CDS	30.0%
GTTTGTGATAAAGAGGATAA+AGG	-	chr5_3:9860350-9860369	Msa0797620:CDS	30.0%
ATGTCCGTAAAAGAAAGAAA+TGG	-	chr5_3:9859442-9859461	Msa0797620:CDS	30.0%
CCTTAATCTTAGTTTCAATC+GGG	-	chr5_3:9859466-9859485	Msa0797620:CDS	30.0%
TTTGCTAGGAATATTGTTCT+TGG	-	chr5_3:9859891-9859910	Msa0797620:CDS	30.0%
TTGCTAGGAATATTGTTCTT+GGG	-	chr5_3:9859892-9859911	Msa0797620:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	9859408	9860652	9859408	ID=Msa0797620;Name=Msa0797620
chr5_3	mRNA	9859408	9860652	9859408	ID=Msa0797620-mRNA-1;Parent=Msa0797620;Name=Msa0797620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|414
chr5_3	exon	9859408	9860652	9859408	ID=Msa0797620-mRNA-1:exon:4216;Parent=Msa0797620-mRNA-1
chr5_3	CDS	9859408	9860652	9859408	ID=Msa0797620-mRNA-1:cds;Parent=Msa0797620-mRNA-1

Gene Sequence

>Msa0797620

ATGGAACTGCAATTAGTTGAAAACGCTTTCGATTATGTCCGTAAAAGAAAGAAATGGACCTTAATCTTAGTTTCAATCGGGTTTAGCAGTTACGTTAGTTACCGTGCTTATCACGCACCATTCATAGCTCGAAAGAGAGAGAAAATTTCAAAGCTTCTGTGTTCTTTAGTTTCTGTAGCAGAAGCTGTTTCAGAATCTGCAGACACCATCGGTATTGTCACAAAAGATGTCAAGAATTTTTTGCAATCTGATTCTGATCAAGTTCCTAATAGTTTGAATCAAATTGCGAAATTATCGCGCTCGGAACAGTTTTCGGATTCTTTGGTTAGTGTGACACGTGCTGTGACTGTTGGAATTGTGAATGGTTATCAATCCATGAGCCAGGCTGATGAAAATCAATCCGATTCAAATGTTGCTGACAAGGTGTTTGATAAATTGTTTACACCGGCTGGTTCGGGATTTGCTTCTGTTGTTGTTGGAAGTTTTGCTAGGAATATTGTTCTTGGGTTTTATTCAGATGCTGGTGGTAAATGCAGTGGAGGGTTGGATTCGAGAAGTGGAGAATCGGGTTGTTCTGATTTGGATTCTGGTGTGCCGAAATGGGTTGATGTTGTTTGTAGTGATAAGTGTGGTGAGCTGATTGGGAATTTTGTTCAATTGTTTGTTAGTACATTGGTTGCAGTTTATCTTGATAAGACAATGCATATCAATACTTATGATGAATTCTTTTCTGGATTAACTAACCCGAAACATGAGACTAGGGTTAGAGAAATGTTGGTTGATGTTTGTAATGGCGCTATAGAGAGTCTTGTTAAAACGTCTCATGAGGTGTTTAATAGCTCGAACCCGAATGATAGTTCAGGTTCAGGTTCAGGTTCTTATTTTGATGCTGGAGAAACTCTAAGTTCTGTAGTGACATCGTGTATTGAATCAGAAAGAGATGTTTGTGATAAAGAGGATAAAGGTGGTTGGGTCAGCAAGGTTTCATCCACATTGGCTATTCCTAGTAATAGGAGACTTGTTCTTGATGTGACTGGGAGGGTCACATTTGAGACAGTTAGATCTTTCATGGAGTTTATTTTGCAAACGTTGTGTGGTTCTGTGAGAAGATGTGCTCACAATGTTCACGAGGAAGTGGTTGAGATTATGAGATATGCTGCAGCTAAATTCTCTGTTATTGTTGCAATATGTCTCGCGTTGTGCCTGCACATAATGGATTGCAATTGGGCTTTGGTGCCTGCTTAA

Protein sequence

>Msa0797620

MELQLVENAFDYVRKRKKWTLILVSIGFSSYVSYRAYHAPFIARKREKISKLLCSLVSVAEAVSESADTIGIVTKDVKNFLQSDSDQVPNSLNQIAKLSRSEQFSDSLVSVTRAVTVGIVNGYQSMSQADENQSDSNVADKVFDKLFTPAGSGFASVVVGSFARNIVLGFYSDAGGKCSGGLDSRSGESGCSDLDSGVPKWVDVVCSDKCGELIGNFVQLFVSTLVAVYLDKTMHINTYDEFFSGLTNPKHETRVREMLVDVCNGAIESLVKTSHEVFNSSNPNDSSGSGSGSYFDAGETLSSVVTSCIESERDVCDKEDKGGWVSKVSSTLAIPSNRRLVLDVTGRVTFETVRSFMEFILQTLCGSVRRCAHNVHEEVVEIMRYAAAKFSVIVAICLALCLHIMDCNWALVPA*