AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797620 MtrunA17_Chr5g0400931 92.530 415 28 2 1 414 1 413 0.0 751
Msa0797620 MtrunA17_Chr3g0135011 44.131 426 197 7 1 414 1 397 8.34e-118 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797620 AT1G10150.1 46.135 414 194 6 3 405 4 399 4.45e-122 360
Msa0797620 AT1G59510.1 42.714 398 178 9 14 406 15 367 5.64e-107 321
Msa0797620 AT3G49790.1 41.584 404 185 5 10 413 12 364 4.95e-98 297

Find 73 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTTCTGATTTGGATTC+TGG 0.226641 5_3:-9860063 Msa0797620:CDS
TAACCCTAGTCTCATGTTTC+GGG 0.244852 5_3:+9859887 None:intergenic
GCAATTTGATTCAAACTATT+AGG 0.252909 5_3:+9860366 None:intergenic
CTAACCCTAGTCTCATGTTT+CGG 0.262134 5_3:+9859886 None:intergenic
GATAGTTCAGGTTCAGGTTC+AGG 0.314416 5_3:-9859778 Msa0797620:CDS
TGAGACAGTTAGATCTTTCA+TGG 0.315546 5_3:-9859581 Msa0797620:CDS
ATTGTTTACACCGGCTGGTT+CGG 0.330132 5_3:-9860196 Msa0797620:CDS
TTGTTTACACCGGCTGGTTC+GGG 0.342746 5_3:-9860195 Msa0797620:CDS
CCCGATTGAAACTAAGATTA+AGG 0.352373 5_3:+9860572 None:intergenic
AGAATCGGGTTGTTCTGATT+TGG 0.353612 5_3:-9860070 Msa0797620:CDS
TTTGCTAGGAATATTGTTCT+TGG 0.353935 5_3:-9860147 Msa0797620:CDS
ACCTTAATCTTAGTTTCAAT+CGG 0.367438 5_3:-9860573 Msa0797620:CDS
TGGATTCTGGTGTGCCGAAA+TGG 0.379309 5_3:-9860050 Msa0797620:CDS
CAAACAACATCAACCCATTT+CGG 0.385507 5_3:+9860036 None:intergenic
TTGCTAGGAATATTGTTCTT+GGG 0.385636 5_3:-9860146 Msa0797620:CDS
CATTGGCTATTCCTAGTAAT+AGG 0.391171 5_3:-9859639 Msa0797620:CDS
CCGAATGATAGTTCAGGTTC+AGG 0.392010 5_3:-9859784 Msa0797620:CDS
TGCACATAATGGATTGCAAT+TGG 0.408920 5_3:-9859426 Msa0797620:CDS
GGATTTGCTTCTGTTGTTGT+TGG 0.421636 5_3:-9860174 Msa0797620:CDS
AATGGATTGCAATTGGGCTT+TGG 0.425168 5_3:-9859419 Msa0797620:CDS
AAGAGATGTTTGTGATAAAG+AGG 0.428216 5_3:-9859695 Msa0797620:CDS
TCTCTCTTTCGAGCTATGAA+TGG 0.431240 5_3:+9860513 None:intergenic
CTTGTCAGCAACATTTGAAT+CGG 0.434555 5_3:+9860230 None:intergenic
GTTTGTGATAAAGAGGATAA+AGG 0.441922 5_3:-9859688 Msa0797620:CDS
TCGAACCCGAATGATAGTTC+AGG 0.449003 5_3:-9859790 Msa0797620:CDS
CCTGAACCTGAACTATCATT+CGG 0.449100 5_3:+9859784 None:intergenic
GGATTCGAGAAGTGGAGAAT+CGG 0.454786 5_3:-9860085 Msa0797620:CDS
ATAAGTGTGGTGAGCTGATT+GGG 0.457299 5_3:-9860008 Msa0797620:CDS
ATGTCCGTAAAAGAAAGAAA+TGG 0.457589 5_3:-9860596 Msa0797620:CDS
GCACATAATGGATTGCAATT+GGG 0.461406 5_3:-9859425 Msa0797620:CDS
CGCGTTGTGCCTGCACATAA+TGG 0.463386 5_3:-9859437 Msa0797620:CDS
CCTTAATCTTAGTTTCAATC+GGG 0.466170 5_3:-9860572 Msa0797620:CDS
CTGAACCTGAACTATCATTC+GGG 0.470073 5_3:+9859785 None:intergenic
AGACTTGTTCTTGATGTGAC+TGG 0.473332 5_3:-9859616 Msa0797620:CDS
GACTAGGGTTAGAGAAATGT+TGG 0.481635 5_3:-9859875 Msa0797620:CDS
GATAAATTGTTTACACCGGC+TGG 0.484801 5_3:-9860201 Msa0797620:CDS
GGATTCTGGTGTGCCGAAAT+GGG 0.490037 5_3:-9860049 Msa0797620:CDS
AGAACAAGTCTCCTATTACT+AGG 0.493344 5_3:+9859628 None:intergenic
CGATTCAAATGTTGCTGACA+AGG 0.496180 5_3:-9860229 Msa0797620:CDS
TAAAGAGGATAAAGGTGGTT+GGG 0.499685 5_3:-9859680 Msa0797620:CDS
GATTCGAGAAGTGGAGAATC+GGG 0.500290 5_3:-9860084 Msa0797620:CDS
CTAACCCGAAACATGAGACT+AGG 0.506984 5_3:-9859891 Msa0797620:CDS
GATAAGTGTGGTGAGCTGAT+TGG 0.513630 5_3:-9860009 Msa0797620:CDS
CTAGTAACCACCACTTAAGC+AGG 0.514335 5_3:+9859394 None:intergenic
GTGACTGTTGGAATTGTGAA+TGG 0.524223 5_3:-9860288 Msa0797620:CDS
ATGTTGGTTGATGTTTGTAA+TGG 0.527695 5_3:-9859859 Msa0797620:CDS
TCAATTGTTTGTTAGTACAT+TGG 0.532506 5_3:-9859977 Msa0797620:CDS
TGGTTATCAATCCATGAGCC+AGG 0.539703 5_3:-9860268 Msa0797620:CDS
GACTTGTTCTTGATGTGACT+GGG 0.540843 5_3:-9859615 Msa0797620:CDS
GGAGGGTTGGATTCGAGAAG+TGG 0.544923 5_3:-9860093 Msa0797620:CDS
TCACAATGTTCACGAGGAAG+TGG 0.550752 5_3:-9859515 Msa0797620:CDS
AATTGCAATCCATTATGTGC+AGG 0.556385 5_3:+9859428 None:intergenic
ATAAAGAGGATAAAGGTGGT+TGG 0.557867 5_3:-9859681 Msa0797620:CDS
TGGTAAATGCAGTGGAGGGT+TGG 0.560656 5_3:-9860106 Msa0797620:CDS
GTTTGATAAATTGTTTACAC+CGG 0.572672 5_3:-9860205 Msa0797620:CDS
CAGCAAGGTTTCATCCACAT+TGG 0.581109 5_3:-9859656 Msa0797620:CDS
GTGACACGTGCTGTGACTGT+TGG 0.593196 5_3:-9860300 Msa0797620:CDS
GAAGCAAATCCCGAACCAGC+CGG 0.594026 5_3:+9860186 None:intergenic
TAAAGGTGGTTGGGTCAGCA+AGG 0.596356 5_3:-9859671 Msa0797620:CDS
AATTGCGAAATTATCGCGCT+CGG 0.597238 5_3:-9860349 Msa0797620:CDS
TAACCCGAAACATGAGACTA+GGG 0.605610 5_3:-9859890 Msa0797620:CDS
TCAGAATCTGCAGACACCAT+CGG 0.605835 5_3:-9860441 Msa0797620:CDS
TTGTTCTTGATGTGACTGGG+AGG 0.633345 5_3:-9859612 Msa0797620:CDS
TGTTCTTGATGTGACTGGGA+GGG 0.644691 5_3:-9859611 Msa0797620:CDS
TCTTGTTAAAACGTCTCATG+AGG 0.649097 5_3:-9859824 Msa0797620:CDS
GTTGTTTGTAGTGATAAGTG+TGG 0.652562 5_3:-9860021 Msa0797620:CDS
GCTGGTGGTAAATGCAGTGG+AGG 0.658148 5_3:-9860111 Msa0797620:CDS
ATTACTAGGAATAGCCAATG+TGG 0.658823 5_3:+9859642 None:intergenic
GATGCTGGTGGTAAATGCAG+TGG 0.670323 5_3:-9860114 Msa0797620:CDS
TGTGATAAAGAGGATAAAGG+TGG 0.671559 5_3:-9859685 Msa0797620:CDS
ATGTGCTCACAATGTTCACG+AGG 0.700633 5_3:-9859521 Msa0797620:CDS
CTGGTGGTAAATGCAGTGGA+GGG 0.702499 5_3:-9860110 Msa0797620:CDS
TGAATGGTGCGTGATAAGCA+CGG 0.702699 5_3:+9860529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTAATCTTAGTTTCAAT+CGG - chr5_3:9859465-9859484 Msa0797620:CDS 25.0%
! GCAATTTGATTCAAACTATT+AGG + chr5_3:9859675-9859694 None:intergenic 25.0%
! GTTTGATAAATTGTTTACAC+CGG - chr5_3:9859833-9859852 Msa0797620:CDS 25.0%
!! TCAATTGTTTGTTAGTACAT+TGG - chr5_3:9860061-9860080 Msa0797620:CDS 25.0%
!! ACTTATGATGAATTCTTTTC+TGG - chr5_3:9860119-9860138 Msa0797620:CDS 25.0%
! ACCTTAATCTTAGTTTCAAT+CGG - chr5_3:9859465-9859484 Msa0797620:CDS 25.0%
! GCAATTTGATTCAAACTATT+AGG + chr5_3:9859675-9859694 None:intergenic 25.0%
! GTTTGATAAATTGTTTACAC+CGG - chr5_3:9859833-9859852 Msa0797620:CDS 25.0%
!! TCAATTGTTTGTTAGTACAT+TGG - chr5_3:9860061-9860080 Msa0797620:CDS 25.0%
!! ACTTATGATGAATTCTTTTC+TGG - chr5_3:9860119-9860138 Msa0797620:CDS 25.0%
ATGTCCGTAAAAGAAAGAAA+TGG - chr5_3:9859442-9859461 Msa0797620:CDS 30.0%
! AGGTCCATTTCTTTCTTTTA+CGG + chr5_3:9859449-9859468 None:intergenic 30.0%
CCTTAATCTTAGTTTCAATC+GGG - chr5_3:9859466-9859485 Msa0797620:CDS 30.0%
TTTGCTAGGAATATTGTTCT+TGG - chr5_3:9859891-9859910 Msa0797620:CDS 30.0%
TTGCTAGGAATATTGTTCTT+GGG - chr5_3:9859892-9859911 Msa0797620:CDS 30.0%
! ATGTTGGTTGATGTTTGTAA+TGG - chr5_3:9860179-9860198 Msa0797620:CDS 30.0%
AAGAGATGTTTGTGATAAAG+AGG - chr5_3:9860343-9860362 Msa0797620:CDS 30.0%
GTTTGTGATAAAGAGGATAA+AGG - chr5_3:9860350-9860369 Msa0797620:CDS 30.0%
!!! TTTATTTTGCAAACGTTGTG+TGG - chr5_3:9860482-9860501 Msa0797620:CDS 30.0%
ATGTCCGTAAAAGAAAGAAA+TGG - chr5_3:9859442-9859461 Msa0797620:CDS 30.0%
! AGGTCCATTTCTTTCTTTTA+CGG + chr5_3:9859449-9859468 None:intergenic 30.0%
CCTTAATCTTAGTTTCAATC+GGG - chr5_3:9859466-9859485 Msa0797620:CDS 30.0%
TTTGCTAGGAATATTGTTCT+TGG - chr5_3:9859891-9859910 Msa0797620:CDS 30.0%
TTGCTAGGAATATTGTTCTT+GGG - chr5_3:9859892-9859911 Msa0797620:CDS 30.0%
! ATGTTGGTTGATGTTTGTAA+TGG - chr5_3:9860179-9860198 Msa0797620:CDS 30.0%
AAGAGATGTTTGTGATAAAG+AGG - chr5_3:9860343-9860362 Msa0797620:CDS 30.0%
GTTTGTGATAAAGAGGATAA+AGG - chr5_3:9860350-9860369 Msa0797620:CDS 30.0%
!!! TTTATTTTGCAAACGTTGTG+TGG - chr5_3:9860482-9860501 Msa0797620:CDS 30.0%
CCCGATTGAAACTAAGATTA+AGG + chr5_3:9859469-9859488 None:intergenic 35.0%
! ATCTTTTGTGACAATACCGA+TGG + chr5_3:9859616-9859635 None:intergenic 35.0%
CTTGTCAGCAACATTTGAAT+CGG + chr5_3:9859811-9859830 None:intergenic 35.0%
!! TTGTTGTTGGAAGTTTTGCT+AGG - chr5_3:9859877-9859896 Msa0797620:CDS 35.0%
CAAACAACATCAACCCATTT+CGG + chr5_3:9860005-9860024 None:intergenic 35.0%
GTTGTTTGTAGTGATAAGTG+TGG - chr5_3:9860017-9860036 Msa0797620:CDS 35.0%
TCTTGTTAAAACGTCTCATG+AGG - chr5_3:9860214-9860233 Msa0797620:CDS 35.0%
!!! TCAGGTTCTTATTTTGATGC+TGG - chr5_3:9860278-9860297 Msa0797620:CDS 35.0%
TGTGATAAAGAGGATAAAGG+TGG - chr5_3:9860353-9860372 Msa0797620:CDS 35.0%
ATAAAGAGGATAAAGGTGGT+TGG - chr5_3:9860357-9860376 Msa0797620:CDS 35.0%
TAAAGAGGATAAAGGTGGTT+GGG - chr5_3:9860358-9860377 Msa0797620:CDS 35.0%
ATTACTAGGAATAGCCAATG+TGG + chr5_3:9860399-9860418 None:intergenic 35.0%
! CATTGGCTATTCCTAGTAAT+AGG - chr5_3:9860399-9860418 Msa0797620:CDS 35.0%
AGAACAAGTCTCCTATTACT+AGG + chr5_3:9860413-9860432 None:intergenic 35.0%
TGAGACAGTTAGATCTTTCA+TGG - chr5_3:9860457-9860476 Msa0797620:CDS 35.0%
AATTGCAATCCATTATGTGC+AGG + chr5_3:9860613-9860632 None:intergenic 35.0%
!! TGCACATAATGGATTGCAAT+TGG - chr5_3:9860612-9860631 Msa0797620:CDS 35.0%
!! GCACATAATGGATTGCAATT+GGG - chr5_3:9860613-9860632 Msa0797620:CDS 35.0%
CCCGATTGAAACTAAGATTA+AGG + chr5_3:9859469-9859488 None:intergenic 35.0%
! ATCTTTTGTGACAATACCGA+TGG + chr5_3:9859616-9859635 None:intergenic 35.0%
CTTGTCAGCAACATTTGAAT+CGG + chr5_3:9859811-9859830 None:intergenic 35.0%
!! TTGTTGTTGGAAGTTTTGCT+AGG - chr5_3:9859877-9859896 Msa0797620:CDS 35.0%
CAAACAACATCAACCCATTT+CGG + chr5_3:9860005-9860024 None:intergenic 35.0%
GTTGTTTGTAGTGATAAGTG+TGG - chr5_3:9860017-9860036 Msa0797620:CDS 35.0%
TCTTGTTAAAACGTCTCATG+AGG - chr5_3:9860214-9860233 Msa0797620:CDS 35.0%
!!! TCAGGTTCTTATTTTGATGC+TGG - chr5_3:9860278-9860297 Msa0797620:CDS 35.0%
TGTGATAAAGAGGATAAAGG+TGG - chr5_3:9860353-9860372 Msa0797620:CDS 35.0%
ATAAAGAGGATAAAGGTGGT+TGG - chr5_3:9860357-9860376 Msa0797620:CDS 35.0%
TAAAGAGGATAAAGGTGGTT+GGG - chr5_3:9860358-9860377 Msa0797620:CDS 35.0%
ATTACTAGGAATAGCCAATG+TGG + chr5_3:9860399-9860418 None:intergenic 35.0%
! CATTGGCTATTCCTAGTAAT+AGG - chr5_3:9860399-9860418 Msa0797620:CDS 35.0%
AGAACAAGTCTCCTATTACT+AGG + chr5_3:9860413-9860432 None:intergenic 35.0%
TGAGACAGTTAGATCTTTCA+TGG - chr5_3:9860457-9860476 Msa0797620:CDS 35.0%
AATTGCAATCCATTATGTGC+AGG + chr5_3:9860613-9860632 None:intergenic 35.0%
!! TGCACATAATGGATTGCAAT+TGG - chr5_3:9860612-9860631 Msa0797620:CDS 35.0%
!! GCACATAATGGATTGCAATT+GGG - chr5_3:9860613-9860632 Msa0797620:CDS 35.0%
TCTCTCTTTCGAGCTATGAA+TGG + chr5_3:9859528-9859547 None:intergenic 40.0%
AATTGCGAAATTATCGCGCT+CGG - chr5_3:9859689-9859708 Msa0797620:CDS 40.0%
! GGAACAGTTTTCGGATTCTT+TGG - chr5_3:9859710-9859729 Msa0797620:CDS 40.0%
GTGACTGTTGGAATTGTGAA+TGG - chr5_3:9859750-9859769 Msa0797620:CDS 40.0%
CGATTCAAATGTTGCTGACA+AGG - chr5_3:9859809-9859828 Msa0797620:CDS 40.0%
GATAAATTGTTTACACCGGC+TGG - chr5_3:9859837-9859856 Msa0797620:CDS 40.0%
! GGATTTGCTTCTGTTGTTGT+TGG - chr5_3:9859864-9859883 Msa0797620:CDS 40.0%
!!! CTTGGGTTTTATTCAGATGC+TGG - chr5_3:9859909-9859928 Msa0797620:CDS 40.0%
! AGAATCGGGTTGTTCTGATT+TGG - chr5_3:9859968-9859987 Msa0797620:CDS 40.0%
!! GGTTGTTCTGATTTGGATTC+TGG - chr5_3:9859975-9859994 Msa0797620:CDS 40.0%
ATAAGTGTGGTGAGCTGATT+GGG - chr5_3:9860030-9860049 Msa0797620:CDS 40.0%
TAACCCGAAACATGAGACTA+GGG - chr5_3:9860148-9860167 Msa0797620:CDS 40.0%
TAACCCTAGTCTCATGTTTC+GGG + chr5_3:9860154-9860173 None:intergenic 40.0%
CTAACCCTAGTCTCATGTTT+CGG + chr5_3:9860155-9860174 None:intergenic 40.0%
GACTAGGGTTAGAGAAATGT+TGG - chr5_3:9860163-9860182 Msa0797620:CDS 40.0%
CTGAACCTGAACTATCATTC+GGG + chr5_3:9860256-9860275 None:intergenic 40.0%
CCTGAACCTGAACTATCATT+CGG + chr5_3:9860257-9860276 None:intergenic 40.0%
! AGACTTGTTCTTGATGTGAC+TGG - chr5_3:9860422-9860441 Msa0797620:CDS 40.0%
! GACTTGTTCTTGATGTGACT+GGG - chr5_3:9860423-9860442 Msa0797620:CDS 40.0%
!! AATGGATTGCAATTGGGCTT+TGG - chr5_3:9860619-9860638 Msa0797620:CDS 40.0%
TCTCTCTTTCGAGCTATGAA+TGG + chr5_3:9859528-9859547 None:intergenic 40.0%
AATTGCGAAATTATCGCGCT+CGG - chr5_3:9859689-9859708 Msa0797620:CDS 40.0%
! GGAACAGTTTTCGGATTCTT+TGG - chr5_3:9859710-9859729 Msa0797620:CDS 40.0%
GTGACTGTTGGAATTGTGAA+TGG - chr5_3:9859750-9859769 Msa0797620:CDS 40.0%
CGATTCAAATGTTGCTGACA+AGG - chr5_3:9859809-9859828 Msa0797620:CDS 40.0%
GATAAATTGTTTACACCGGC+TGG - chr5_3:9859837-9859856 Msa0797620:CDS 40.0%
! GGATTTGCTTCTGTTGTTGT+TGG - chr5_3:9859864-9859883 Msa0797620:CDS 40.0%
!!! CTTGGGTTTTATTCAGATGC+TGG - chr5_3:9859909-9859928 Msa0797620:CDS 40.0%
! AGAATCGGGTTGTTCTGATT+TGG - chr5_3:9859968-9859987 Msa0797620:CDS 40.0%
!! GGTTGTTCTGATTTGGATTC+TGG - chr5_3:9859975-9859994 Msa0797620:CDS 40.0%
ATAAGTGTGGTGAGCTGATT+GGG - chr5_3:9860030-9860049 Msa0797620:CDS 40.0%
TAACCCGAAACATGAGACTA+GGG - chr5_3:9860148-9860167 Msa0797620:CDS 40.0%
TAACCCTAGTCTCATGTTTC+GGG + chr5_3:9860154-9860173 None:intergenic 40.0%
CTAACCCTAGTCTCATGTTT+CGG + chr5_3:9860155-9860174 None:intergenic 40.0%
GACTAGGGTTAGAGAAATGT+TGG - chr5_3:9860163-9860182 Msa0797620:CDS 40.0%
CTGAACCTGAACTATCATTC+GGG + chr5_3:9860256-9860275 None:intergenic 40.0%
CCTGAACCTGAACTATCATT+CGG + chr5_3:9860257-9860276 None:intergenic 40.0%
! AGACTTGTTCTTGATGTGAC+TGG - chr5_3:9860422-9860441 Msa0797620:CDS 40.0%
! GACTTGTTCTTGATGTGACT+GGG - chr5_3:9860423-9860442 Msa0797620:CDS 40.0%
!! AATGGATTGCAATTGGGCTT+TGG - chr5_3:9860619-9860638 Msa0797620:CDS 40.0%
TGAATGGTGCGTGATAAGCA+CGG + chr5_3:9859512-9859531 None:intergenic 45.0%
TCAGAATCTGCAGACACCAT+CGG - chr5_3:9859597-9859616 Msa0797620:CDS 45.0%
TGGTTATCAATCCATGAGCC+AGG - chr5_3:9859770-9859789 Msa0797620:CDS 45.0%
! ATTTTCATCAGCCTGGCTCA+TGG + chr5_3:9859784-9859803 None:intergenic 45.0%
!! CGGATTGATTTTCATCAGCC+TGG + chr5_3:9859791-9859810 None:intergenic 45.0%
! ATTGTTTACACCGGCTGGTT+CGG - chr5_3:9859842-9859861 Msa0797620:CDS 45.0%
!!! GGGTTTTATTCAGATGCTGG+TGG - chr5_3:9859912-9859931 Msa0797620:CDS 45.0%
GGATTCGAGAAGTGGAGAAT+CGG - chr5_3:9859953-9859972 Msa0797620:CDS 45.0%
GATTCGAGAAGTGGAGAATC+GGG - chr5_3:9859954-9859973 Msa0797620:CDS 45.0%
GATAAGTGTGGTGAGCTGAT+TGG - chr5_3:9860029-9860048 Msa0797620:CDS 45.0%
CTAACCCGAAACATGAGACT+AGG - chr5_3:9860147-9860166 Msa0797620:CDS 45.0%
TCGAACCCGAATGATAGTTC+AGG - chr5_3:9860248-9860267 Msa0797620:CDS 45.0%
! CCGAATGATAGTTCAGGTTC+AGG - chr5_3:9860254-9860273 Msa0797620:CDS 45.0%
! GATAGTTCAGGTTCAGGTTC+AGG - chr5_3:9860260-9860279 Msa0797620:CDS 45.0%
CAGCAAGGTTTCATCCACAT+TGG - chr5_3:9860382-9860401 Msa0797620:CDS 45.0%
TTGTTCTTGATGTGACTGGG+AGG - chr5_3:9860426-9860445 Msa0797620:CDS 45.0%
TGTTCTTGATGTGACTGGGA+GGG - chr5_3:9860427-9860446 Msa0797620:CDS 45.0%
ATGTGCTCACAATGTTCACG+AGG - chr5_3:9860517-9860536 Msa0797620:CDS 45.0%
TCACAATGTTCACGAGGAAG+TGG - chr5_3:9860523-9860542 Msa0797620:CDS 45.0%
TGAATGGTGCGTGATAAGCA+CGG + chr5_3:9859512-9859531 None:intergenic 45.0%
TCAGAATCTGCAGACACCAT+CGG - chr5_3:9859597-9859616 Msa0797620:CDS 45.0%
TGGTTATCAATCCATGAGCC+AGG - chr5_3:9859770-9859789 Msa0797620:CDS 45.0%
! ATTTTCATCAGCCTGGCTCA+TGG + chr5_3:9859784-9859803 None:intergenic 45.0%
!! CGGATTGATTTTCATCAGCC+TGG + chr5_3:9859791-9859810 None:intergenic 45.0%
! ATTGTTTACACCGGCTGGTT+CGG - chr5_3:9859842-9859861 Msa0797620:CDS 45.0%
!!! GGGTTTTATTCAGATGCTGG+TGG - chr5_3:9859912-9859931 Msa0797620:CDS 45.0%
GGATTCGAGAAGTGGAGAAT+CGG - chr5_3:9859953-9859972 Msa0797620:CDS 45.0%
GATTCGAGAAGTGGAGAATC+GGG - chr5_3:9859954-9859973 Msa0797620:CDS 45.0%
GATAAGTGTGGTGAGCTGAT+TGG - chr5_3:9860029-9860048 Msa0797620:CDS 45.0%
CTAACCCGAAACATGAGACT+AGG - chr5_3:9860147-9860166 Msa0797620:CDS 45.0%
TCGAACCCGAATGATAGTTC+AGG - chr5_3:9860248-9860267 Msa0797620:CDS 45.0%
! CCGAATGATAGTTCAGGTTC+AGG - chr5_3:9860254-9860273 Msa0797620:CDS 45.0%
! GATAGTTCAGGTTCAGGTTC+AGG - chr5_3:9860260-9860279 Msa0797620:CDS 45.0%
CAGCAAGGTTTCATCCACAT+TGG - chr5_3:9860382-9860401 Msa0797620:CDS 45.0%
TTGTTCTTGATGTGACTGGG+AGG - chr5_3:9860426-9860445 Msa0797620:CDS 45.0%
TGTTCTTGATGTGACTGGGA+GGG - chr5_3:9860427-9860446 Msa0797620:CDS 45.0%
ATGTGCTCACAATGTTCACG+AGG - chr5_3:9860517-9860536 Msa0797620:CDS 45.0%
TCACAATGTTCACGAGGAAG+TGG - chr5_3:9860523-9860542 Msa0797620:CDS 45.0%
! ATCGCGCTCGGAACAGTTTT+CGG - chr5_3:9859701-9859720 Msa0797620:CDS 50.0%
! TTGTTTACACCGGCTGGTTC+GGG - chr5_3:9859843-9859862 Msa0797620:CDS 50.0%
GATGCTGGTGGTAAATGCAG+TGG - chr5_3:9859924-9859943 Msa0797620:CDS 50.0%
CTGGTGGTAAATGCAGTGGA+GGG - chr5_3:9859928-9859947 Msa0797620:CDS 50.0%
TGGTAAATGCAGTGGAGGGT+TGG - chr5_3:9859932-9859951 Msa0797620:CDS 50.0%
TGGATTCTGGTGTGCCGAAA+TGG - chr5_3:9859988-9860007 Msa0797620:CDS 50.0%
GGATTCTGGTGTGCCGAAAT+GGG - chr5_3:9859989-9860008 Msa0797620:CDS 50.0%
TAAAGGTGGTTGGGTCAGCA+AGG - chr5_3:9860367-9860386 Msa0797620:CDS 50.0%
! ATCGCGCTCGGAACAGTTTT+CGG - chr5_3:9859701-9859720 Msa0797620:CDS 50.0%
! TTGTTTACACCGGCTGGTTC+GGG - chr5_3:9859843-9859862 Msa0797620:CDS 50.0%
GATGCTGGTGGTAAATGCAG+TGG - chr5_3:9859924-9859943 Msa0797620:CDS 50.0%
CTGGTGGTAAATGCAGTGGA+GGG - chr5_3:9859928-9859947 Msa0797620:CDS 50.0%
TGGTAAATGCAGTGGAGGGT+TGG - chr5_3:9859932-9859951 Msa0797620:CDS 50.0%
TGGATTCTGGTGTGCCGAAA+TGG - chr5_3:9859988-9860007 Msa0797620:CDS 50.0%
GGATTCTGGTGTGCCGAAAT+GGG - chr5_3:9859989-9860008 Msa0797620:CDS 50.0%
TAAAGGTGGTTGGGTCAGCA+AGG - chr5_3:9860367-9860386 Msa0797620:CDS 50.0%
GTGACACGTGCTGTGACTGT+TGG - chr5_3:9859738-9859757 Msa0797620:CDS 55.0%
GAAGCAAATCCCGAACCAGC+CGG + chr5_3:9859855-9859874 None:intergenic 55.0%
GCTGGTGGTAAATGCAGTGG+AGG - chr5_3:9859927-9859946 Msa0797620:CDS 55.0%
GGAGGGTTGGATTCGAGAAG+TGG - chr5_3:9859945-9859964 Msa0797620:CDS 55.0%
CGCGTTGTGCCTGCACATAA+TGG - chr5_3:9860601-9860620 Msa0797620:CDS 55.0%
GTGACACGTGCTGTGACTGT+TGG - chr5_3:9859738-9859757 Msa0797620:CDS 55.0%
GAAGCAAATCCCGAACCAGC+CGG + chr5_3:9859855-9859874 None:intergenic 55.0%
GCTGGTGGTAAATGCAGTGG+AGG - chr5_3:9859927-9859946 Msa0797620:CDS 55.0%
GGAGGGTTGGATTCGAGAAG+TGG - chr5_3:9859945-9859964 Msa0797620:CDS 55.0%
CGCGTTGTGCCTGCACATAA+TGG - chr5_3:9860601-9860620 Msa0797620:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9859408 9860652 9859408 ID=Msa0797620;Name=Msa0797620
chr5_3 mRNA 9859408 9860652 9859408 ID=Msa0797620-mRNA-1;Parent=Msa0797620;Name=Msa0797620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|414
chr5_3 exon 9859408 9860652 9859408 ID=Msa0797620-mRNA-1:exon:4216;Parent=Msa0797620-mRNA-1
chr5_3 CDS 9859408 9860652 9859408 ID=Msa0797620-mRNA-1:cds;Parent=Msa0797620-mRNA-1
Gene Sequence

>Msa0797620

ATGGAACTGCAATTAGTTGAAAACGCTTTCGATTATGTCCGTAAAAGAAAGAAATGGACCTTAATCTTAGTTTCAATCGGGTTTAGCAGTTACGTTAGTTACCGTGCTTATCACGCACCATTCATAGCTCGAAAGAGAGAGAAAATTTCAAAGCTTCTGTGTTCTTTAGTTTCTGTAGCAGAAGCTGTTTCAGAATCTGCAGACACCATCGGTATTGTCACAAAAGATGTCAAGAATTTTTTGCAATCTGATTCTGATCAAGTTCCTAATAGTTTGAATCAAATTGCGAAATTATCGCGCTCGGAACAGTTTTCGGATTCTTTGGTTAGTGTGACACGTGCTGTGACTGTTGGAATTGTGAATGGTTATCAATCCATGAGCCAGGCTGATGAAAATCAATCCGATTCAAATGTTGCTGACAAGGTGTTTGATAAATTGTTTACACCGGCTGGTTCGGGATTTGCTTCTGTTGTTGTTGGAAGTTTTGCTAGGAATATTGTTCTTGGGTTTTATTCAGATGCTGGTGGTAAATGCAGTGGAGGGTTGGATTCGAGAAGTGGAGAATCGGGTTGTTCTGATTTGGATTCTGGTGTGCCGAAATGGGTTGATGTTGTTTGTAGTGATAAGTGTGGTGAGCTGATTGGGAATTTTGTTCAATTGTTTGTTAGTACATTGGTTGCAGTTTATCTTGATAAGACAATGCATATCAATACTTATGATGAATTCTTTTCTGGATTAACTAACCCGAAACATGAGACTAGGGTTAGAGAAATGTTGGTTGATGTTTGTAATGGCGCTATAGAGAGTCTTGTTAAAACGTCTCATGAGGTGTTTAATAGCTCGAACCCGAATGATAGTTCAGGTTCAGGTTCAGGTTCTTATTTTGATGCTGGAGAAACTCTAAGTTCTGTAGTGACATCGTGTATTGAATCAGAAAGAGATGTTTGTGATAAAGAGGATAAAGGTGGTTGGGTCAGCAAGGTTTCATCCACATTGGCTATTCCTAGTAATAGGAGACTTGTTCTTGATGTGACTGGGAGGGTCACATTTGAGACAGTTAGATCTTTCATGGAGTTTATTTTGCAAACGTTGTGTGGTTCTGTGAGAAGATGTGCTCACAATGTTCACGAGGAAGTGGTTGAGATTATGAGATATGCTGCAGCTAAATTCTCTGTTATTGTTGCAATATGTCTCGCGTTGTGCCTGCACATAATGGATTGCAATTGGGCTTTGGTGCCTGCTTAA

Protein sequence

>Msa0797620

MELQLVENAFDYVRKRKKWTLILVSIGFSSYVSYRAYHAPFIARKREKISKLLCSLVSVAEAVSESADTIGIVTKDVKNFLQSDSDQVPNSLNQIAKLSRSEQFSDSLVSVTRAVTVGIVNGYQSMSQADENQSDSNVADKVFDKLFTPAGSGFASVVVGSFARNIVLGFYSDAGGKCSGGLDSRSGESGCSDLDSGVPKWVDVVCSDKCGELIGNFVQLFVSTLVAVYLDKTMHINTYDEFFSGLTNPKHETRVREMLVDVCNGAIESLVKTSHEVFNSSNPNDSSGSGSGSYFDAGETLSSVVTSCIESERDVCDKEDKGGWVSKVSSTLAIPSNRRLVLDVTGRVTFETVRSFMEFILQTLCGSVRRCAHNVHEEVVEIMRYAAAKFSVIVAICLALCLHIMDCNWALVPA*