AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417060 MtrunA17_Chr5g0401231 95.984 1270 41 1 1 1270 1 1260 0.0 2493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417060 AT1G64960.2 50.275 1273 584 10 1 1268 1 1229 0.0 1134
Msa1417060 AT1G64960.1 49.411 1273 566 9 1 1268 1 1200 0.0 1101

Find 243 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGTTGTCACATTAAATT+TGG 0.118138 tig0024440:-16548 Msa1417060:CDS
GTAAGCATCTTTGTTATAAT+TGG 0.182037 tig0024440:+17525 None:intergenic
GCTACAATCAAGGGCCATTT+TGG 0.186330 tig0024440:+14147 None:intergenic
GTCGTGTCCTTCATCTATTT+TGG 0.194615 tig0024440:-17563 Msa1417060:CDS
ACATAAGTTGTTGCTTTCTT+TGG 0.204410 tig0024440:-16624 Msa1417060:CDS
AATTAAATCAAGCAAGTTAT+TGG 0.209359 tig0024440:+14338 None:intergenic
GAATGCTTTGCATCTGCTTT+TGG 0.221348 tig0024440:-17721 Msa1417060:CDS
AGGGTTTGATTGAATGAATT+AGG 0.240634 tig0024440:+19189 None:intergenic
AGAAGTCCTGCCACATTATC+TGG 0.262209 tig0024440:+16725 None:intergenic
TGAAGTTACAATTTCCAAAA+TGG 0.266674 tig0024440:-14161 Msa1417060:CDS
CGGCGGAGGGTGGCGGTGGG+AGG 0.270236 tig0024440:+19056 None:intergenic
AAGTCGATGTTGGAGGCTTA+TGG 0.282924 tig0024440:-18480 Msa1417060:CDS
TTCTTGGTTTGTTCACTTGT+TGG 0.284764 tig0024440:-13976 Msa1417060:CDS
TTTGTATATTAGAAGGGTTT+TGG 0.286758 tig0024440:-18340 Msa1417060:CDS
AGGGGTTGCTTGAACCTCTT+TGG 0.288614 tig0024440:-13765 Msa1417060:CDS
TTGGCTGCCTGATGTAGTTT+TGG 0.290932 tig0024440:-14253 Msa1417060:CDS
TTGAATGTCGAGAATTTATC+TGG 0.295429 tig0024440:+14069 None:intergenic
GCATGATAATTTGATTGTTT+TGG 0.298824 tig0024440:-18865 Msa1417060:CDS
AGATCTAAAGATTGCTTTCC+TGG 0.301662 tig0024440:+16352 None:intergenic
AGAGCGGCGGAGGGTGGCGG+TGG 0.302209 tig0024440:+19052 None:intergenic
AGAAGATGGAAGAAAGTTTC+TGG 0.302676 tig0024440:-18580 Msa1417060:CDS
CATAAGTTGTTGCTTTCTTT+GGG 0.303041 tig0024440:-16623 Msa1417060:CDS
ATTCCACTCCTTGAATCTTC+TGG 0.303771 tig0024440:+18426 None:intergenic
TGTTTCAACTGAATCATGTT+TGG 0.303846 tig0024440:-14316 Msa1417060:CDS
CATAGACATATCTCCTGTTT+TGG 0.310009 tig0024440:-16252 Msa1417060:CDS
GATTGGCGATCAACATCTTC+AGG 0.310014 tig0024440:+16662 None:intergenic
GGTTCTATCCATGCAAGTTC+TGG 0.311947 tig0024440:-18372 Msa1417060:CDS
ATCGTTGTCACATTAAATTT+GGG 0.311953 tig0024440:-16547 Msa1417060:CDS
AAAATCAAAATTCCACAAAA+AGG 0.312821 tig0024440:-15266 Msa1417060:CDS
TCTTGGTTTGTTCACTTGTT+GGG 0.323357 tig0024440:-13975 Msa1417060:CDS
CACTGCAGAGAGCACAGTTT+TGG 0.325243 tig0024440:+14125 None:intergenic
GGAAGAGCGGCGGAGGGTGG+CGG 0.326211 tig0024440:+19049 None:intergenic
TTGATCGCCAATCTAAAATT+AGG 0.330348 tig0024440:-16652 Msa1417060:CDS
GGTCAAAGCATTCCTGAGTT+TGG 0.330640 tig0024440:-16954 Msa1417060:CDS
ACAGCAATTGTTCTAACTTC+TGG 0.331484 tig0024440:+17597 None:intergenic
ACTGGGTTCGGTGGTGGTGG+TGG 0.345101 tig0024440:+19016 None:intergenic
ATCGGATTGGGAACTGGGTT+CGG 0.345664 tig0024440:+19004 None:intergenic
TCAGCTTGGGAAGGAGCTTT+TGG 0.349604 tig0024440:-18535 Msa1417060:CDS
GTTTCAACTGAATCATGTTT+GGG 0.353872 tig0024440:-14315 Msa1417060:CDS
ATTTGAAACTGTTGTTAAAC+AGG 0.356426 tig0024440:-18632 Msa1417060:CDS
AAAGTGGAAGGTTTACTAAC+TGG 0.356693 tig0024440:-16803 Msa1417060:CDS
GAGAAATTGATGCATGTAAA+GGG 0.356739 tig0024440:-13784 Msa1417060:CDS
GGGTTTGATTGAATGAATTA+GGG 0.357688 tig0024440:+19190 None:intergenic
GGGTGGCGGTGGGAGGGGTT+TGG 0.362193 tig0024440:+19063 None:intergenic
AATTGAGAATGGGTTCTTGC+AGG 0.370908 tig0024440:-18406 Msa1417060:CDS
CATAACTTGGAGTCAACAAC+TGG 0.378416 tig0024440:-15327 Msa1417060:CDS
ACAGTGTTACAGCTACTAAA+AGG 0.379156 tig0024440:-16508 Msa1417060:CDS
AGTCAGTGAACCATGCTATA+TGG 0.381458 tig0024440:-16855 Msa1417060:CDS
TAAGGTGCTCTGTCCAAGAC+TGG 0.381805 tig0024440:-17397 Msa1417060:CDS
GCTGCATTACACTAGTAAAA+AGG 0.383645 tig0024440:-17051 Msa1417060:CDS
CAATGTGGATTCACATAACT+TGG 0.384118 tig0024440:-15340 Msa1417060:CDS
CTTATGCAGCAGGGTTGTTA+AGG 0.385515 tig0024440:+16577 None:intergenic
GCGGAGGGTGGCGGTGGGAG+GGG 0.386179 tig0024440:+19058 None:intergenic
TTCTTGCAGGATTTGATTGA+GGG 0.387600 tig0024440:-18393 Msa1417060:CDS
AGGGAGTGAAGAAATGAGAT+TGG 0.390904 tig0024440:+19163 None:intergenic
AAGGACTTTGAGCTGGCATT+AGG 0.391101 tig0024440:-13943 Msa1417060:CDS
TAAATGTTCACTTCCACTTT+CGG 0.391923 tig0024440:+14200 None:intergenic
CTCGACATTCAATAAACTTA+CGG 0.392019 tig0024440:-14058 Msa1417060:CDS
ACGTATCATCTATATGAAAC+TGG 0.400632 tig0024440:-13742 Msa1417060:CDS
TTGGGAACTGGGTTCGGTGG+TGG 0.401352 tig0024440:+19010 None:intergenic
TGACATGATGTTATCTTCTC+TGG 0.402253 tig0024440:-13866 Msa1417060:CDS
TTGAGGCATCGGGATCTTCA+AGG 0.407230 tig0024440:+17688 None:intergenic
TACTGCTGTTCTGAAGTTCA+TGG 0.407356 tig0024440:-14613 Msa1417060:CDS
GGAACTGGGTTCGGTGGTGG+TGG 0.410008 tig0024440:+19013 None:intergenic
AGAGTATAATGGATGCAGTT+GGG 0.410082 tig0024440:-14005 Msa1417060:CDS
TTTGTTAGCTTCTGAGCTAC+AGG 0.413385 tig0024440:+17130 None:intergenic
CGATTACATGCCTCCTCAAC+GGG 0.415186 tig0024440:+17073 None:intergenic
CAAAATATTGCACCGGCCAT+TGG 0.415212 tig0024440:+17025 None:intergenic
CCACTCTCATGAAGTCCTTA+AGG 0.418852 tig0024440:-17415 Msa1417060:CDS
ATTAATCAGAGGACCGTAGA+TGG 0.419354 tig0024440:-18309 Msa1417060:CDS
TTGCCGAGCCAGTCATATTT+CGG 0.420764 tig0024440:-18263 Msa1417060:CDS
AGCGTCTAAAACTCATCTTA+TGG 0.421060 tig0024440:-16981 Msa1417060:CDS
CTTAACAACCCTGCTGCATA+AGG 0.424511 tig0024440:-16576 Msa1417060:CDS
TAATCGTGATGACAGGGATT+GGG 0.424973 tig0024440:-13890 Msa1417060:CDS
TCAAGGAGTGGAATTGAGAA+TGG 0.425285 tig0024440:-18417 Msa1417060:CDS
AGCTAGTAATAACGATGAAC+TGG 0.425908 tig0024440:-13806 Msa1417060:CDS
TAAAACTCATCTTATGGAAC+TGG 0.430233 tig0024440:-16975 Msa1417060:CDS
AGTCGATGTTGGAGGCTTAT+GGG 0.430569 tig0024440:-18479 Msa1417060:CDS
GGCGGAGGGTGGCGGTGGGA+GGG 0.435084 tig0024440:+19057 None:intergenic
ATGCGTTTCGCATCCGAGAA+AGG 0.435129 tig0024440:-18928 Msa1417060:CDS
AGGCTATCTCTGACAAATGC+TGG 0.441732 tig0024440:-15240 Msa1417060:CDS
TCATGCAATGCTTGAACTCC+AGG 0.448812 tig0024440:+18882 None:intergenic
CGATGCCTCAAAAGAGGATA+AGG 0.452469 tig0024440:-17676 Msa1417060:CDS
CAATAAACTTACGGCTATGC+TGG 0.453081 tig0024440:-14049 Msa1417060:CDS
CAGAATTGAATTTGAGGAAG+AGG 0.455907 tig0024440:-14481 Msa1417060:CDS
AGGGCCATATATGCCAAAAC+AGG 0.456311 tig0024440:+16239 None:intergenic
CCCAGTGCCAAAACTACATC+AGG 0.461018 tig0024440:+14246 None:intergenic
CTCCTCAACGGGCACTATTG+AGG 0.464983 tig0024440:+17084 None:intergenic
TTATATTTGAAAACAGAAGA+TGG 0.467998 tig0024440:-18594 Msa1417060:CDS
CGAGCACGTGCTCAACTGCT+TGG 0.468749 tig0024440:-15400 Msa1417060:CDS
ATCAGGCAGCCAAGGCTTTG+CGG 0.469242 tig0024440:+14263 None:intergenic
ACTTGTTGGGCTAGAACAAA+AGG 0.469593 tig0024440:-13962 Msa1417060:CDS
AAGTCAGCATTGAGCATTGT+GGG 0.469732 tig0024440:-16286 Msa1417060:CDS
TGAAGAAATGAGATTGGAAG+AGG 0.470796 tig0024440:+19169 None:intergenic
AGTTGTTTAATCGTGATGAC+AGG 0.474192 tig0024440:-13897 Msa1417060:CDS
TCCTCAACGGGCACTATTGA+GGG 0.474994 tig0024440:+17085 None:intergenic
TTGTTGCAGCCGCAAAGCCT+TGG 0.475384 tig0024440:-14272 Msa1417060:CDS
GTTAGAACAATTGCTGTTGA+GGG 0.477109 tig0024440:-17591 Msa1417060:CDS
ATGGATTCGTAGAGAGAGGG+AGG 0.479474 tig0024440:+19143 None:intergenic
GTTCTACAACACACCGAAAG+TGG 0.479507 tig0024440:-14213 Msa1417060:CDS
GTTCTTGCAGGATTTGATTG+AGG 0.481339 tig0024440:-18394 Msa1417060:CDS
GAAATCAACGATTCGCGCTC+CGG 0.482789 tig0024440:+18777 None:intergenic
TTGGGTTGAGTGATCAGCTT+GGG 0.484657 tig0024440:-18548 Msa1417060:CDS
GATAGGCAGCCTTATGCAGC+AGG 0.485936 tig0024440:+16567 None:intergenic
GGAGAAATTGATGCATGTAA+AGG 0.487328 tig0024440:-13785 Msa1417060:CDS
AGCATTAAGTGACCCAGTCT+TGG 0.488311 tig0024440:+17384 None:intergenic
GTCTTGGACAGAGCACCTTA+AGG 0.488423 tig0024440:+17400 None:intergenic
ATGATGTATGCAACGAGGTA+AGG 0.489515 tig0024440:-17479 Msa1417060:CDS
TGCAATGAGTAACTCCTTGA+GGG 0.490048 tig0024440:+16829 None:intergenic
AACGATCTCGATAGAACAAA+AGG 0.490167 tig0024440:+18744 None:intergenic
GTAAGGCTTTCTACGTTGAA+TGG 0.490296 tig0024440:-17462 Msa1417060:CDS
ATCTTTGTTATAATTGGTGA+CGG 0.493361 tig0024440:+17531 None:intergenic
GTTACTCATTGCAGAGAAAG+TGG 0.494022 tig0024440:-16819 Msa1417060:CDS
GGATTGAATTGTGGTGGTGA+TGG 0.498059 tig0024440:+19124 None:intergenic
TGAGGCATCGGGATCTTCAA+GGG 0.498223 tig0024440:+17689 None:intergenic
GCGGGAAGAGCGGCGGAGGG+TGG 0.498932 tig0024440:+19046 None:intergenic
TCATCACAGAATTGAATTTG+AGG 0.499129 tig0024440:-14487 Msa1417060:CDS
GCTGAATGCAGATCAGATAG+AGG 0.504242 tig0024440:-16915 Msa1417060:CDS
AGTTAGAACAATTGCTGTTG+AGG 0.504585 tig0024440:-17592 Msa1417060:CDS
AAGAGTATAATGGATGCAGT+TGG 0.504894 tig0024440:-14006 Msa1417060:CDS
GGTGATGGATTCGTAGAGAG+AGG 0.505660 tig0024440:+19139 None:intergenic
AGTCATATTTCGGTCTCTGC+AGG 0.512308 tig0024440:-18253 Msa1417060:intron
GGGATATATTGTTTCGAGCA+TGG 0.517339 tig0024440:-18458 Msa1417060:CDS
TTAATCGTGATGACAGGGAT+TGG 0.517973 tig0024440:-13891 Msa1417060:CDS
CAAGGAGTGGAATTGAGAAT+GGG 0.519108 tig0024440:-18416 Msa1417060:CDS
TGCTTCAGCATGAGGATACC+AGG 0.519304 tig0024440:-16370 Msa1417060:CDS
TTTACTAACTGGGGCATCTA+CGG 0.519887 tig0024440:-16792 Msa1417060:CDS
CGATTCGAGAAGATTGAGGA+AGG 0.522090 tig0024440:+19103 None:intergenic
AACATCGACTTCCGTCCATA+CGG 0.522970 tig0024440:+18492 None:intergenic
TTAATCAGAGGACCGTAGAT+GGG 0.523203 tig0024440:-18308 Msa1417060:CDS
CAATTCTGTGATGATACAGC+TGG 0.524071 tig0024440:+14496 None:intergenic
AAGTGGAAGGTTTACTAACT+GGG 0.525292 tig0024440:-16802 Msa1417060:CDS
AAGACTGGGTCACTTAATGC+TGG 0.526089 tig0024440:-17382 Msa1417060:CDS
AATGTGATACTGACTGATTC+CGG 0.528013 tig0024440:-14399 Msa1417060:CDS
TTCTTCTACATTACTTTCAG+AGG 0.530469 tig0024440:-16135 Msa1417060:CDS
CAACCGTCATTTGCAGAGCA+AGG 0.531075 tig0024440:+16219 None:intergenic
GTCATCACGATTAAACAACT+TGG 0.532544 tig0024440:+13900 None:intergenic
AAGCTGTGCCAGAAGATTCA+AGG 0.532592 tig0024440:-18434 Msa1417060:CDS
GAAAAGAATGGTGATTCCAA+GGG 0.533003 tig0024440:-16176 Msa1417060:CDS
ACCTCAACAAGTGCTTTGTA+AGG 0.535761 tig0024440:-14646 Msa1417060:CDS
CTCATTGCAGAGAAAGTGGA+AGG 0.536541 tig0024440:-16815 Msa1417060:CDS
TGTTCGATTCGAGAAGATTG+AGG 0.537356 tig0024440:+19099 None:intergenic
GAGTATAATGGATGCAGTTG+GGG 0.538063 tig0024440:-14004 Msa1417060:CDS
AAGTTGTTGCTTTCTTTGGG+AGG 0.538403 tig0024440:-16620 Msa1417060:CDS
CAAGTTATTGGCAAGAGTGA+AGG 0.539764 tig0024440:+14350 None:intergenic
TGCAAGTATGCCATCTCGGA+AGG 0.539958 tig0024440:-17004 Msa1417060:CDS
CTCAATAGTGCCCGTTGAGG+AGG 0.540249 tig0024440:-17083 Msa1417060:CDS
GTATGGACGGAAGTCGATGT+TGG 0.540415 tig0024440:-18490 Msa1417060:CDS
CAAAAGTTCCAGAACTTGCA+TGG 0.542061 tig0024440:+18364 None:intergenic
GATGATTATTTAGTAGCTGT+AGG 0.545384 tig0024440:-16416 Msa1417060:CDS
GAAGAAATGAGATTGGAAGA+GGG 0.546308 tig0024440:+19170 None:intergenic
CTTAAGGACTTCATGAGAGT+GGG 0.547100 tig0024440:+17416 None:intergenic
GAGCGGCGGAGGGTGGCGGT+GGG 0.547858 tig0024440:+19053 None:intergenic
AATCGTGATGACAGGGATTG+GGG 0.550245 tig0024440:-13889 Msa1417060:CDS
AAATTTAATGTGACAACGAT+AGG 0.550315 tig0024440:+16550 None:intergenic
ATGCTATATGGATGCCCTCA+AGG 0.550582 tig0024440:-16843 Msa1417060:CDS
ATGGTGGAAGGAGAATTTGC+CGG 0.551172 tig0024440:-18796 Msa1417060:CDS
TAGAGACTTGCTTCAGCATG+AGG 0.551742 tig0024440:-16378 Msa1417060:CDS
ATTCGTTCGCAGATTCCGTA+TGG 0.553384 tig0024440:-18507 Msa1417060:CDS
TTGAGACTATATGTGAAGAA+TGG 0.555953 tig0024440:-18815 Msa1417060:CDS
TTTGCGGGAAGAGCGGCGGA+GGG 0.556140 tig0024440:+19043 None:intergenic
CCTCACAGTACAAGTTGCTA+TGG 0.556604 tig0024440:-17352 Msa1417060:CDS
TGAAAAGAATGGTGATTCCA+AGG 0.558871 tig0024440:-16177 Msa1417060:CDS
CAATATCATAACAATCATGC+CGG 0.559963 tig0024440:+15535 None:intergenic
TTTAGACGCTCCTTCCGAGA+TGG 0.560520 tig0024440:+16994 None:intergenic
GCGATTACATGCCTCCTCAA+CGG 0.560926 tig0024440:+17072 None:intergenic
CACTGTTTGTCCAGATAATG+TGG 0.561270 tig0024440:-16735 Msa1417060:CDS
AGATCCCGATGCCTCAAAAG+AGG 0.561369 tig0024440:-17682 Msa1417060:CDS
ATTGAGGAAGGATTGAATTG+TGG 0.561575 tig0024440:+19115 None:intergenic
TAGTTTCTCAACCCCATCTA+CGG 0.562850 tig0024440:+18296 None:intergenic
GTGATGGATTCGTAGAGAGA+GGG 0.563564 tig0024440:+19140 None:intergenic
TAATTTCCCAAAATAGATGA+AGG 0.566722 tig0024440:+17556 None:intergenic
AGACCGAAATATGACTGGCT+CGG 0.567968 tig0024440:+18260 None:intergenic
TGGGAGGGTTTATTAATCAG+AGG 0.569490 tig0024440:-18320 Msa1417060:CDS
GTCGATGTTGGAGGCTTATG+GGG 0.569573 tig0024440:-18478 Msa1417060:CDS
GGCTATCTCTGACAAATGCT+GGG 0.569692 tig0024440:-15239 Msa1417060:CDS
GTGCTCTCTGCAGTGAATGA+AGG 0.573610 tig0024440:-14117 Msa1417060:CDS
CTGCAATGAGTAACTCCTTG+AGG 0.579265 tig0024440:+16828 None:intergenic
GTTAGCTTCTGAGCTACAGG+AGG 0.579964 tig0024440:+17133 None:intergenic
GTTTGTCCAGATAATGTGGC+AGG 0.581670 tig0024440:-16731 Msa1417060:CDS
TGCAGAGACCGAAATATGAC+TGG 0.581828 tig0024440:+18255 None:intergenic
AAAACTACATCAGGCAGCCA+AGG 0.582232 tig0024440:+14255 None:intergenic
AATGCTGGGTACCCAAGTAA+TGG 0.583247 tig0024440:-15225 Msa1417060:CDS
AGAACAAAAGGACTTTGAGC+TGG 0.584523 tig0024440:-13950 Msa1417060:CDS
TTTAGTAGCTGTAACACTGT+GGG 0.585322 tig0024440:+16511 None:intergenic
CCTTAAGGACTTCATGAGAG+TGG 0.589374 tig0024440:+17415 None:intergenic
TGGACGGAAGTCGATGTTGG+AGG 0.591488 tig0024440:-18487 Msa1417060:CDS
GGCCCTTGCTCTGCAAATGA+CGG 0.591616 tig0024440:-16222 Msa1417060:CDS
GTTGTTTAATCGTGATGACA+GGG 0.593151 tig0024440:-13896 Msa1417060:CDS
AGCTACAGGAGGTTGATCAC+TGG 0.593278 tig0024440:+17144 None:intergenic
AGACTATATGTGAAGAATGG+TGG 0.596012 tig0024440:-18812 Msa1417060:CDS
AAGAATAATCCATTGTTGTG+AGG 0.596859 tig0024440:+14564 None:intergenic
TAGTAGCTGTAGGAGTTGCA+TGG 0.597500 tig0024440:-16406 Msa1417060:CDS
CTGAATGCAGATCAGATAGA+GGG 0.598250 tig0024440:-16914 Msa1417060:CDS
GAGGCATCGGGATCTTCAAG+GGG 0.599155 tig0024440:+17690 None:intergenic
TGTCATTATGGAGGATCCAC+CGG 0.599171 tig0024440:+14380 None:intergenic
AACCGTCATTTGCAGAGCAA+GGG 0.599307 tig0024440:+16220 None:intergenic
ACCTTACAAAGCACTTGTTG+AGG 0.600071 tig0024440:+14645 None:intergenic
TTTGGGTTGAGTGATCAGCT+TGG 0.601001 tig0024440:-18549 Msa1417060:CDS
GTTCGCAGATTCCGTATGGA+CGG 0.602215 tig0024440:-18503 Msa1417060:CDS
AAGGTGCTCTGTCCAAGACT+GGG 0.602746 tig0024440:-17396 Msa1417060:CDS
TATATGTGAAGAATGGTGGA+AGG 0.602831 tig0024440:-18808 Msa1417060:CDS
AAATCTATCATAAGATAGAG+AGG 0.605785 tig0024440:-13840 Msa1417060:CDS
TGGATTCGTAGAGAGAGGGA+GGG 0.607728 tig0024440:+19144 None:intergenic
TCATCTATATGAAACTGGAA+AGG 0.612001 tig0024440:-13737 Msa1417060:CDS
GTGCCAGAAGATTCAAGGAG+TGG 0.612532 tig0024440:-18429 Msa1417060:CDS
TCGTTGTCACATTAAATTTG+GGG 0.617087 tig0024440:-16546 Msa1417060:CDS
ATACTTGCAAAATATTGCAC+CGG 0.617576 tig0024440:+17018 None:intergenic
GTTGAGTGATCAGCTTGGGA+AGG 0.621002 tig0024440:-18544 Msa1417060:CDS
TAATCAGAGGACCGTAGATG+GGG 0.621529 tig0024440:-18307 Msa1417060:CDS
TCCCTCAATAGTGCCCGTTG+AGG 0.623320 tig0024440:-17086 Msa1417060:CDS
TATAGATGATACGTCCAAAG+AGG 0.623631 tig0024440:+13751 None:intergenic
AGGAGCAAAACACATGGCAG+TGG 0.623835 tig0024440:+14584 None:intergenic
CACATTATCTGGACAAACAG+TGG 0.625302 tig0024440:+16736 None:intergenic
TTGAGGGCATCCATATAGCA+TGG 0.625981 tig0024440:+16845 None:intergenic
TCTGCAGTGAATGAAGGTGA+AGG 0.629597 tig0024440:-14111 Msa1417060:CDS
CTTGTGACAAAACCAAACTC+AGG 0.631868 tig0024440:+16942 None:intergenic
CAAATGACGGTTGATAATGT+TGG 0.639424 tig0024440:-16209 Msa1417060:CDS
GAGGAAGGATTGAATTGTGG+TGG 0.641780 tig0024440:+19118 None:intergenic
GTGAATGAAGGTGAAGGAGA+TGG 0.646473 tig0024440:-14105 Msa1417060:CDS
GGATTGGGAACTGGGTTCGG+TGG 0.647078 tig0024440:+19007 None:intergenic
TTAAGGACTTCATGAGAGTG+GGG 0.647165 tig0024440:+17417 None:intergenic
TAGGGTTTATATGTTTCGCG+AGG 0.654308 tig0024440:-18694 Msa1417060:CDS
GCTGGGTACCCAAGTAATGG+AGG 0.655722 tig0024440:-15222 Msa1417060:intron
CTTCGAAGATGAGAGTATCG+AGG 0.656364 tig0024440:-18655 Msa1417060:CDS
AGTGTTGTCACAAACTGCCA+TGG 0.660349 tig0024440:-16689 Msa1417060:CDS
GAAGTCAGCATTGAGCATTG+TGG 0.665576 tig0024440:-16287 Msa1417060:CDS
CAACATCTTCAGGTAAACCA+TGG 0.669355 tig0024440:+16672 None:intergenic
GGCACAAGTAGTGAAAAGAA+TGG 0.672314 tig0024440:-16188 Msa1417060:CDS
GTAGCTGTAACACTGTGGGA+TGG 0.675445 tig0024440:+16515 None:intergenic
CACTGTACAATATCACAATG+TGG 0.676395 tig0024440:-15355 Msa1417060:CDS
ATAACTTGGAGTCAACAACT+GGG 0.682337 tig0024440:-15326 Msa1417060:CDS
AGGCATCGGGATCTTCAAGG+GGG 0.688549 tig0024440:+17691 None:intergenic
AGTGGAAGGTTTACTAACTG+GGG 0.692191 tig0024440:-16801 Msa1417060:CDS
GCTAAAGAGATGAATTCTTG+TGG 0.699935 tig0024440:+19254 None:intergenic
ACTATTGAGGGAAAGTACGA+AGG 0.710367 tig0024440:+17097 None:intergenic
GTTGTGAGGAGCAAAACACA+TGG 0.711346 tig0024440:+14578 None:intergenic
ATAGGCAGCCTTATGCAGCA+GGG 0.712099 tig0024440:+16568 None:intergenic
AAAAGAATGGTGATTCCAAG+GGG 0.712247 tig0024440:-16175 Msa1417060:CDS
GTGATACTGACTGATTCCGG+TGG 0.713602 tig0024440:-14396 Msa1417060:CDS
CCATAGCAACTTGTACTGTG+AGG 0.720086 tig0024440:+17352 None:intergenic
AGAAATTGATGCATGTAAAG+GGG 0.733317 tig0024440:-13783 Msa1417060:CDS
GTCTCATGATGTATGCAACG+AGG 0.768233 tig0024440:-17484 Msa1417060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCACTTTTATGAAAATTTA+AGG + tig0024440:14909-14928 None:intergenic 15.0%
!!! AATTTTGAATATCATTTAGA+TGG + tig0024440:15688-15707 None:intergenic 15.0%
!! TATACATATTGTAGTTATAA+TGG - tig0024440:17830-17849 Msa1417060:intron 15.0%
!!! TAAAAAGAATAAGAGTATAA+TGG - tig0024440:18985-19004 Msa1417060:CDS 15.0%
!!! GAGAATTTTATGTTTTTCAT+CGG + tig0024440:14018-14037 None:intergenic 20.0%
!!! TCTTCTGTTTTCAAATATAA+AGG + tig0024440:14407-14426 None:intergenic 20.0%
!! TTATATTTGAAAACAGAAGA+TGG - tig0024440:14407-14426 Msa1417060:CDS 20.0%
!!! TTTTGCTTTGTATATTAGAA+GGG - tig0024440:14655-14674 Msa1417060:CDS 20.0%
!! TTAAGATTATAATGCATACA+AGG + tig0024440:14987-15006 None:intergenic 20.0%
!!! GGGTTTTCTTTTATAAAAAA+AGG - tig0024440:15085-15104 Msa1417060:intron 20.0%
!!! AAAGAAAATGCTTTTTGTTT+TGG - tig0024440:15121-15140 Msa1417060:intron 20.0%
!! TCGTAAATTGTAATAAGTAA+TGG - tig0024440:15154-15173 Msa1417060:intron 20.0%
!! CGTAAATTGTAATAAGTAAT+GGG - tig0024440:15155-15174 Msa1417060:intron 20.0%
!!! TCAAAATTTTCAGTTTAACA+AGG - tig0024440:15700-15719 Msa1417060:intron 20.0%
!!! TTTAATTGAAAATTTTCCAG+AGG + tig0024440:16532-16551 None:intergenic 20.0%
!! GAAAAAAACAACATTTCTAA+AGG + tig0024440:16678-16697 None:intergenic 20.0%
!! TAAAATGAAACAAGCAATTT+AGG + tig0024440:17051-17070 None:intergenic 20.0%
!!! TTCAACTTCTTTTTTTCTTA+TGG - tig0024440:17256-17275 Msa1417060:intron 20.0%
!!! TTTTTTTAAACAGACTGTAT+TGG - tig0024440:17568-17587 Msa1417060:CDS 20.0%
!! AAAATCAAAATTCCACAAAA+AGG - tig0024440:17735-17754 Msa1417060:CDS 20.0%
!! AAATTATAATTTGACTGAGA+TGG + tig0024440:17944-17963 None:intergenic 20.0%
!!! TTGTCTAAATCTTTTTGTAT+AGG - tig0024440:18317-18336 Msa1417060:CDS 20.0%
!! AATTAAATCAAGCAAGTTAT+TGG + tig0024440:18666-18685 None:intergenic 20.0%
!! TTTATGTTTTTCATCGGATT+GGG + tig0024440:14012-14031 None:intergenic 25.0%
!! TTTTATGTTTTTCATCGGAT+TGG + tig0024440:14013-14032 None:intergenic 25.0%
! GAAAAATCAAAAACCTTTCT+CGG + tig0024440:14089-14108 None:intergenic 25.0%
!! GCATGATAATTTGATTGTTT+TGG - tig0024440:14136-14155 Msa1417060:CDS 25.0%
!!! TAATTTGATTGTTTTGGAAG+CGG - tig0024440:14142-14161 Msa1417060:CDS 25.0%
!! ATTTGAAACTGTTGTTAAAC+AGG - tig0024440:14369-14388 Msa1417060:CDS 25.0%
!! CTTTTGCTTTGTATATTAGA+AGG - tig0024440:14654-14673 Msa1417060:CDS 25.0%
!! TTTGTATATTAGAAGGGTTT+TGG - tig0024440:14661-14680 Msa1417060:CDS 25.0%
!! TTGTATATTAGAAGGGTTTT+GGG - tig0024440:14662-14681 Msa1417060:CDS 25.0%
! TAATTTCCCAAAATAGATGA+AGG + tig0024440:15448-15467 None:intergenic 25.0%
!! ATCTTTGTTATAATTGGTGA+CGG + tig0024440:15473-15492 None:intergenic 25.0%
!! GTAAGCATCTTTGTTATAAT+TGG + tig0024440:15479-15498 None:intergenic 25.0%
! ATTAGCAAGTACATTAGATA+CGG + tig0024440:15754-15773 None:intergenic 25.0%
! CTAATATAATCAATTCTCAC+TGG - tig0024440:15769-15788 Msa1417060:intron 25.0%
! AAATTTAATGTGACAACGAT+AGG + tig0024440:16454-16473 None:intergenic 25.0%
! TATCGTTGTCACATTAAATT+TGG - tig0024440:16453-16472 Msa1417060:CDS 25.0%
! ATCGTTGTCACATTAAATTT+GGG - tig0024440:16454-16473 Msa1417060:CDS 25.0%
!!! CGTTTTGTACATAGTTTTAT+TGG - tig0024440:16899-16918 Msa1417060:CDS 25.0%
!!! ACCATTTTTACGAATTATAG+AGG - tig0024440:17133-17152 Msa1417060:CDS 25.0%
! ACCTCTATAATTCGTAAAAA+TGG + tig0024440:17137-17156 None:intergenic 25.0%
!! TTTTTACGAATTATAGAGGT+CGG - tig0024440:17137-17156 Msa1417060:CDS 25.0%
!! ATGACTAATATAAGTTTTCC+TGG - tig0024440:17345-17364 Msa1417060:CDS 25.0%
!! ATATAAGTTTTCCTGGATTT+TGG - tig0024440:17352-17371 Msa1417060:CDS 25.0%
!!! TTTTTTCCCTTGAAATTTTC+AGG - tig0024440:17440-17459 Msa1417060:CDS 25.0%
! ACATCAATTCATCAATACAA+TGG + tig0024440:17545-17564 None:intergenic 25.0%
! AAAATCGAAGTTCCAAAAAA+AGG - tig0024440:17699-17718 Msa1417060:CDS 25.0%
! TGTCTGTATAAATAGTTAGA+TGG - tig0024440:17978-17997 Msa1417060:intron 25.0%
! GTCTGTATAAATAGTTAGAT+GGG - tig0024440:17979-17998 Msa1417060:intron 25.0%
! TAAATAGTTAGATGGGTAAT+TGG - tig0024440:17986-18005 Msa1417060:intron 25.0%
! AAATAGTTAGATGGGTAATT+GGG - tig0024440:17987-18006 Msa1417060:intron 25.0%
!!! TCTAGTTCTATTTTGAATTC+TGG - tig0024440:18040-18059 Msa1417060:intron 25.0%
! CTAATCTACACTATAAAATC+CGG - tig0024440:18158-18177 Msa1417060:intron 25.0%
!! ATTTGATTTAACCATGTGTT+TGG - tig0024440:18196-18215 Msa1417060:intron 25.0%
! TGAAGTTACAATTTCCAAAA+TGG - tig0024440:18840-18859 Msa1417060:CDS 25.0%
! AAATCTATCATAAGATAGAG+AGG - tig0024440:19161-19180 Msa1417060:CDS 25.0%
!!! TTTAGAGGATTTTAGGGTTA+AGG + tig0024440:13778-13797 None:intergenic 30.0%
! AGAGGATTTAGAGGATTTTA+GGG + tig0024440:13784-13803 None:intergenic 30.0%
GGGTTTGATTGAATGAATTA+GGG + tig0024440:13814-13833 None:intergenic 30.0%
AGGGTTTGATTGAATGAATT+AGG + tig0024440:13815-13834 None:intergenic 30.0%
TTGAGACTATATGTGAAGAA+TGG - tig0024440:14186-14205 Msa1417060:CDS 30.0%
GTTGACATTGAAGAAAAAAG+TGG - tig0024440:14277-14296 Msa1417060:CDS 30.0%
!!! AAGTTTCTGGCTTTTTTGTT+TGG - tig0024440:14434-14453 Msa1417060:CDS 30.0%
!!! AGTTTCTGGCTTTTTTGTTT+GGG - tig0024440:14435-14454 Msa1417060:CDS 30.0%
AACACAGTAAAATGTATGCT+GGG + tig0024440:14801-14820 None:intergenic 30.0%
AAACACAGTAAAATGTATGC+TGG + tig0024440:14802-14821 None:intergenic 30.0%
AGAAAATGTTTGTGCAACAT+TGG - tig0024440:14877-14896 Msa1417060:intron 30.0%
AAGTTGAGCTCTCTTAAATT+TGG - tig0024440:15064-15083 Msa1417060:intron 30.0%
AGTTGAGCTCTCTTAAATTT+GGG - tig0024440:15065-15084 Msa1417060:intron 30.0%
! CTTTGCCTTCTTTTCAATAT+AGG - tig0024440:15235-15254 Msa1417060:CDS 30.0%
TTAGCAAGTACATTAGATAC+GGG + tig0024440:15753-15772 None:intergenic 30.0%
ATACTTGCAAAATATTGCAC+CGG + tig0024440:15986-16005 None:intergenic 30.0%
TAAAACTCATCTTATGGAAC+TGG - tig0024440:16026-16045 Msa1417060:intron 30.0%
! TTGATCGCCAATCTAAAATT+AGG - tig0024440:16349-16368 Msa1417060:CDS 30.0%
!! ACATAAGTTGTTGCTTTCTT+TGG - tig0024440:16377-16396 Msa1417060:CDS 30.0%
!! CATAAGTTGTTGCTTTCTTT+GGG - tig0024440:16378-16397 Msa1417060:CDS 30.0%
TCGTTGTCACATTAAATTTG+GGG - tig0024440:16455-16474 Msa1417060:CDS 30.0%
AGGAAAAAATCTAAATCCTC+TGG - tig0024440:16513-16532 Msa1417060:CDS 30.0%
GATGATTATTTAGTAGCTGT+AGG - tig0024440:16585-16604 Msa1417060:CDS 30.0%
!!! GTTGTTTTTTTCGCTTAAGA+TGG - tig0024440:16686-16705 Msa1417060:CDS 30.0%
TTCTTCTACATTACTTTCAG+AGG - tig0024440:16866-16885 Msa1417060:CDS 30.0%
! TTTAAAATTCATCTACCCTC+TGG - tig0024440:16933-16952 Msa1417060:CDS 30.0%
!! TTGCTTGTTTCATTTTAACG+TGG - tig0024440:17054-17073 Msa1417060:CDS 30.0%
GAATGCAAAACAAAATCACA+AGG + tig0024440:17193-17212 None:intergenic 30.0%
TAAGTGATGCATTGAGTAAA+AGG + tig0024440:17228-17247 None:intergenic 30.0%
AATTGACGTGAAATTATAGC+AGG + tig0024440:17323-17342 None:intergenic 30.0%
! CATCTTTTGTTCAGTTTCAT+TGG - tig0024440:17382-17401 Msa1417060:CDS 30.0%
!! TTGGTTGATTTTCAATTGTC+TGG - tig0024440:17401-17420 Msa1417060:CDS 30.0%
CAATATCATAACAATCATGC+CGG + tig0024440:17469-17488 None:intergenic 30.0%
CAATTCATCAATACAATGGA+AGG + tig0024440:17541-17560 None:intergenic 30.0%
AACTGCTTGGAAAAACTATT+TGG - tig0024440:17614-17633 Msa1417060:CDS 30.0%
TCCAAAAAAAGGAAGAAAAC+AGG - tig0024440:17710-17729 Msa1417060:CDS 30.0%
CCAAAAAAAGGAAGAAAACA+GGG - tig0024440:17711-17730 Msa1417060:CDS 30.0%
AGAATGACTTGAAGATACAA+TGG + tig0024440:18101-18120 None:intergenic 30.0%
TGTATCTTCAAGTCATTCTT+AGG - tig0024440:18102-18121 Msa1417060:intron 30.0%
GTTTCATTTGTGAAGGAATA+TGG - tig0024440:18126-18145 Msa1417060:intron 30.0%
! ATAGTGTAGATTAGCCAAAA+GGG + tig0024440:18152-18171 None:intergenic 30.0%
! TATAGTGTAGATTAGCCAAA+AGG + tig0024440:18153-18172 None:intergenic 30.0%
AAATGAAAACAGATAGATGC+CGG + tig0024440:18180-18199 None:intergenic 30.0%
AAGAATAATCCATTGTTGTG+AGG + tig0024440:18440-18459 None:intergenic 30.0%
! GATATGTTGTATGCATTTTG+AGG + tig0024440:18471-18490 None:intergenic 30.0%
TCATCACAGAATTGAATTTG+AGG - tig0024440:18514-18533 Msa1417060:CDS 30.0%
TGTTTCAACTGAATCATGTT+TGG - tig0024440:18685-18704 Msa1417060:CDS 30.0%
GTTTCAACTGAATCATGTTT+GGG - tig0024440:18686-18705 Msa1417060:CDS 30.0%
TAAATGTTCACTTCCACTTT+CGG + tig0024440:18804-18823 None:intergenic 30.0%
TTGAATGTCGAGAATTTATC+TGG + tig0024440:18935-18954 None:intergenic 30.0%
CTCGACATTCAATAAACTTA+CGG - tig0024440:18943-18962 Msa1417060:CDS 30.0%
GAGAAATTGATGCATGTAAA+GGG - tig0024440:19217-19236 Msa1417060:CDS 30.0%
AGAAATTGATGCATGTAAAG+GGG - tig0024440:19218-19237 Msa1417060:CDS 30.0%
ACGTATCATCTATATGAAAC+TGG - tig0024440:19259-19278 Msa1417060:CDS 30.0%
TCATCTATATGAAACTGGAA+AGG - tig0024440:19264-19283 Msa1417060:CDS 30.0%
GCTAAAGAGATGAATTCTTG+TGG + tig0024440:13750-13769 None:intergenic 35.0%
! GAGAGGATTTAGAGGATTTT+AGG + tig0024440:13785-13804 None:intergenic 35.0%
!!! ATGAATTAGGGTTTTGAGAG+AGG + tig0024440:13802-13821 None:intergenic 35.0%
GAAGAAATGAGATTGGAAGA+GGG + tig0024440:13834-13853 None:intergenic 35.0%
TGAAGAAATGAGATTGGAAG+AGG + tig0024440:13835-13854 None:intergenic 35.0%
ATTGAGGAAGGATTGAATTG+TGG + tig0024440:13889-13908 None:intergenic 35.0%
!!! GATTTTTCTGATTTGCTACC+TGG - tig0024440:14101-14120 Msa1417060:CDS 35.0%
AGACTATATGTGAAGAATGG+TGG - tig0024440:14189-14208 Msa1417060:CDS 35.0%
! TATATGTGAAGAATGGTGGA+AGG - tig0024440:14193-14212 Msa1417060:CDS 35.0%
AACGATCTCGATAGAACAAA+AGG + tig0024440:14260-14279 None:intergenic 35.0%
AGAAAAAAGTGGATGTGCAT+AGG - tig0024440:14288-14307 Msa1417060:CDS 35.0%
GAAAAAAGTGGATGTGCATA+GGG - tig0024440:14289-14308 Msa1417060:CDS 35.0%
AGAAGATGGAAGAAAGTTTC+TGG - tig0024440:14421-14440 Msa1417060:CDS 35.0%
TTCTTGCAGGATTTGATTGA+GGG - tig0024440:14608-14627 Msa1417060:CDS 35.0%
!!! TATATTAGAAGGGTTTTGGG+AGG - tig0024440:14665-14684 Msa1417060:CDS 35.0%
!!! ATATTAGAAGGGTTTTGGGA+GGG - tig0024440:14666-14685 Msa1417060:intron 35.0%
TGTAATGCAAAGTCTTCAGA+TGG + tig0024440:14847-14866 None:intergenic 35.0%
TCTGAAGACTTTGCATTACA+CGG - tig0024440:14847-14866 Msa1417060:intron 35.0%
ATGTTTGTGCAACATTGGAT+TGG - tig0024440:14882-14901 Msa1417060:intron 35.0%
AAGCTTACAACATAGCATCA+CGG + tig0024440:14938-14957 None:intergenic 35.0%
CTGTAATCTTATGACTTTCG+AGG - tig0024440:15015-15034 Msa1417060:intron 35.0%
AGCTCAACTTGATTATAAGC+TGG + tig0024440:15054-15073 None:intergenic 35.0%
TGCAGCCTATATTGAAAAGA+AGG + tig0024440:15243-15262 None:intergenic 35.0%
! TGTATCCTTATCCTCTTTTG+AGG + tig0024440:15333-15352 None:intergenic 35.0%
ACAGCAATTGTTCTAACTTC+TGG + tig0024440:15407-15426 None:intergenic 35.0%
! AGTTAGAACAATTGCTGTTG+AGG - tig0024440:15409-15428 Msa1417060:CDS 35.0%
! GTTAGAACAATTGCTGTTGA+GGG - tig0024440:15410-15429 Msa1417060:CDS 35.0%
! TCGTGTCCTTCATCTATTTT+GGG - tig0024440:15439-15458 Msa1417060:intron 35.0%
GTACATTAGATACGGGAATT+AGG + tig0024440:15746-15765 None:intergenic 35.0%
GCTGCATTACACTAGTAAAA+AGG - tig0024440:15950-15969 Msa1417060:intron 35.0%
ACTAGTAAAAAGGTCTCCAA+TGG - tig0024440:15960-15979 Msa1417060:intron 35.0%
! ATTTTGCAAGTATGCCATCT+CGG - tig0024440:15993-16012 Msa1417060:intron 35.0%
! AGCGTCTAAAACTCATCTTA+TGG - tig0024440:16020-16039 Msa1417060:intron 35.0%
AAAGTGGAAGGTTTACTAAC+TGG - tig0024440:16198-16217 Msa1417060:CDS 35.0%
AAGTGGAAGGTTTACTAACT+GGG - tig0024440:16199-16218 Msa1417060:CDS 35.0%
! GTGCAGACCTAATTTTAGAT+TGG + tig0024440:16359-16378 None:intergenic 35.0%
TTTAGTAGCTGTAACACTGT+GGG + tig0024440:16493-16512 None:intergenic 35.0%
! TTTTAGTAGCTGTAACACTG+TGG + tig0024440:16494-16513 None:intergenic 35.0%
ACAGTGTTACAGCTACTAAA+AGG - tig0024440:16493-16512 Msa1417060:CDS 35.0%
AGATCTAAAGATTGCTTTCC+TGG + tig0024440:16652-16671 None:intergenic 35.0%
! CATAGACATATCTCCTGTTT+TGG - tig0024440:16749-16768 Msa1417060:CDS 35.0%
!!! ATCTCCTGTTTTGGCATATA+TGG - tig0024440:16758-16777 Msa1417060:CDS 35.0%
!! CAAATGACGGTTGATAATGT+TGG - tig0024440:16792-16811 Msa1417060:CDS 35.0%
TGAAAAGAATGGTGATTCCA+AGG - tig0024440:16824-16843 Msa1417060:CDS 35.0%
GAAAAGAATGGTGATTCCAA+GGG - tig0024440:16825-16844 Msa1417060:CDS 35.0%
AAAAGAATGGTGATTCCAAG+GGG - tig0024440:16826-16845 Msa1417060:CDS 35.0%
!! AATCTTAGTTTTCTTCCCCT+TGG + tig0024440:16844-16863 None:intergenic 35.0%
TGCAATGAATACCAGCAATT+TGG + tig0024440:16994-17013 None:intergenic 35.0%
AAACTAGCACAGTGCAAATT+GGG + tig0024440:17099-17118 None:intergenic 35.0%
TAAACTAGCACAGTGCAAAT+TGG + tig0024440:17100-17119 None:intergenic 35.0%
CGGAAACCTGAAAATTTCAA+GGG + tig0024440:17449-17468 None:intergenic 35.0%
!!! CCTTGAAATTTTCAGGTTTC+CGG - tig0024440:17447-17466 Msa1417060:CDS 35.0%
GTTAAATGAATGAGTGAGCT+AGG + tig0024440:17512-17531 None:intergenic 35.0%
CACTGTACAATATCACAATG+TGG - tig0024440:17646-17665 Msa1417060:CDS 35.0%
CAATGTGGATTCACATAACT+TGG - tig0024440:17661-17680 Msa1417060:CDS 35.0%
ATAACTTGGAGTCAACAACT+GGG - tig0024440:17675-17694 Msa1417060:CDS 35.0%
! CCCTGTTTTCTTCCTTTTTT+TGG + tig0024440:17714-17733 None:intergenic 35.0%
AAAATTCCACAAAAAGGCGA+AGG - tig0024440:17741-17760 Msa1417060:CDS 35.0%
! TTTTCTCACCTCCATTACTT+GGG + tig0024440:17790-17809 None:intergenic 35.0%
! ATTTTCTCACCTCCATTACT+TGG + tig0024440:17791-17810 None:intergenic 35.0%
AACAAAAAGAGCCAAACACA+TGG + tig0024440:18210-18229 None:intergenic 35.0%
CAGAATTGAATTTGAGGAAG+AGG - tig0024440:18520-18539 Msa1417060:CDS 35.0%
! AATGTGATACTGACTGATTC+CGG - tig0024440:18602-18621 Msa1417060:CDS 35.0%
! GAAGGCTTTTGATGTCATTA+TGG + tig0024440:18636-18655 None:intergenic 35.0%
!!! ACAGTTTTGGCTACAATCAA+GGG + tig0024440:18866-18885 None:intergenic 35.0%
!! AAGAGTATAATGGATGCAGT+TGG - tig0024440:18995-19014 Msa1417060:CDS 35.0%
!! AGAGTATAATGGATGCAGTT+GGG - tig0024440:18996-19015 Msa1417060:CDS 35.0%
!! TTCTTGGTTTGTTCACTTGT+TGG - tig0024440:19025-19044 Msa1417060:CDS 35.0%
!! TCTTGGTTTGTTCACTTGTT+GGG - tig0024440:19026-19045 Msa1417060:CDS 35.0%
GTCATCACGATTAAACAACT+TGG + tig0024440:19104-19123 None:intergenic 35.0%
AGTTGTTTAATCGTGATGAC+AGG - tig0024440:19104-19123 Msa1417060:CDS 35.0%
GTTGTTTAATCGTGATGACA+GGG - tig0024440:19105-19124 Msa1417060:CDS 35.0%
TGACATGATGTTATCTTCTC+TGG - tig0024440:19135-19154 Msa1417060:CDS 35.0%
AGCTAGTAATAACGATGAAC+TGG - tig0024440:19195-19214 Msa1417060:CDS 35.0%
GGAGAAATTGATGCATGTAA+AGG - tig0024440:19216-19235 Msa1417060:CDS 35.0%
TATAGATGATACGTCCAAAG+AGG + tig0024440:19253-19272 None:intergenic 35.0%
!!! GGATTTTAGGGTTAAGGTTG+TGG + tig0024440:13772-13791 None:intergenic 40.0%
!!! GGTTTTGAGAGAGGATTTAG+AGG + tig0024440:13793-13812 None:intergenic 40.0%
AGGGAGTGAAGAAATGAGAT+TGG + tig0024440:13841-13860 None:intergenic 40.0%
! TGTTCGATTCGAGAAGATTG+AGG + tig0024440:13905-13924 None:intergenic 40.0%
!! TTTTCATCGGATTGGGAACT+GGG + tig0024440:14005-14024 None:intergenic 40.0%
!! TTTTTCATCGGATTGGGAAC+TGG + tig0024440:14006-14025 None:intergenic 40.0%
!! AGCGGATTCGATTTTGTCTT+CGG - tig0024440:14160-14179 Msa1417060:CDS 40.0%
TAGGGTTTATATGTTTCGCG+AGG - tig0024440:14307-14326 Msa1417060:CDS 40.0%
GGGATATATTGTTTCGAGCA+TGG - tig0024440:14543-14562 Msa1417060:CDS 40.0%
ATTCCACTCCTTGAATCTTC+TGG + tig0024440:14578-14597 None:intergenic 40.0%
TCAAGGAGTGGAATTGAGAA+TGG - tig0024440:14584-14603 Msa1417060:CDS 40.0%
CAAGGAGTGGAATTGAGAAT+GGG - tig0024440:14585-14604 Msa1417060:CDS 40.0%
! AATTGAGAATGGGTTCTTGC+AGG - tig0024440:14595-14614 Msa1417060:CDS 40.0%
GTTCTTGCAGGATTTGATTG+AGG - tig0024440:14607-14626 Msa1417060:CDS 40.0%
CAAAAGTTCCAGAACTTGCA+TGG + tig0024440:14640-14659 None:intergenic 40.0%
TGGGAGGGTTTATTAATCAG+AGG - tig0024440:14681-14700 Msa1417060:intron 40.0%
ATTAATCAGAGGACCGTAGA+TGG - tig0024440:14692-14711 Msa1417060:intron 40.0%
TTAATCAGAGGACCGTAGAT+GGG - tig0024440:14693-14712 Msa1417060:intron 40.0%
TAGTTTCTCAACCCCATCTA+CGG + tig0024440:14708-14727 None:intergenic 40.0%
CTGAAGACTTTGCATTACAC+GGG - tig0024440:14848-14867 Msa1417060:intron 40.0%
TATAAGCTGGTATACCAACC+AGG + tig0024440:15041-15060 None:intergenic 40.0%
! GAATGCTTTGCATCTGCTTT+TGG - tig0024440:15280-15299 Msa1417060:CDS 40.0%
!!! TTATCCTCTTTTGAGGCATC+GGG + tig0024440:15326-15345 None:intergenic 40.0%
!!! CTTATCCTCTTTTGAGGCAT+CGG + tig0024440:15327-15346 None:intergenic 40.0%
! GTCGTGTCCTTCATCTATTT+TGG - tig0024440:15438-15457 Msa1417060:intron 40.0%
ATGATGTATGCAACGAGGTA+AGG - tig0024440:15522-15541 Msa1417060:intron 40.0%
GTAAGGCTTTCTACGTTGAA+TGG - tig0024440:15539-15558 Msa1417060:CDS 40.0%
TTAAGGACTTCATGAGAGTG+GGG + tig0024440:15587-15606 None:intergenic 40.0%
CTTAAGGACTTCATGAGAGT+GGG + tig0024440:15588-15607 None:intergenic 40.0%
! ATCAATTCTCACTGGTTAGC+TGG - tig0024440:15777-15796 Msa1417060:intron 40.0%
! TTTGTTAGCTTCTGAGCTAC+AGG + tig0024440:15874-15893 None:intergenic 40.0%
! ACTATTGAGGGAAAGTACGA+AGG + tig0024440:15907-15926 None:intergenic 40.0%
CTTGTGACAAAACCAAACTC+AGG + tig0024440:16062-16081 None:intergenic 40.0%
CTGAATGCAGATCAGATAGA+GGG - tig0024440:16087-16106 Msa1417060:intron 40.0%
AGTCAGTGAACCATGCTATA+TGG - tig0024440:16146-16165 Msa1417060:CDS 40.0%
TGCAATGAGTAACTCCTTGA+GGG + tig0024440:16175-16194 None:intergenic 40.0%
GTTACTCATTGCAGAGAAAG+TGG - tig0024440:16182-16201 Msa1417060:CDS 40.0%
AGTGGAAGGTTTACTAACTG+GGG - tig0024440:16200-16219 Msa1417060:CDS 40.0%
! TTTACTAACTGGGGCATCTA+CGG - tig0024440:16209-16228 Msa1417060:CDS 40.0%
CACATTATCTGGACAAACAG+TGG + tig0024440:16268-16287 None:intergenic 40.0%
CACTGTTTGTCCAGATAATG+TGG - tig0024440:16266-16285 Msa1417060:CDS 40.0%
CAACATCTTCAGGTAAACCA+TGG + tig0024440:16332-16351 None:intergenic 40.0%
!! AAGTTGTTGCTTTCTTTGGG+AGG - tig0024440:16381-16400 Msa1417060:CDS 40.0%
! AAGTCAGCATTGAGCATTGT+GGG - tig0024440:16715-16734 Msa1417060:CDS 40.0%
GGCACAAGTAGTGAAAAGAA+TGG - tig0024440:16813-16832 Msa1417060:CDS 40.0%
GAAGAAAATGCACAACCAGA+GGG + tig0024440:16951-16970 None:intergenic 40.0%
AGAAGAAAATGCACAACCAG+AGG + tig0024440:16952-16971 None:intergenic 40.0%
CAGTGCAAATTGGGAATGAA+AGG + tig0024440:17090-17109 None:intergenic 40.0%
GAAATTATAGCAGGCCAGAA+TGG + tig0024440:17314-17333 None:intergenic 40.0%
CCGGAAACCTGAAAATTTCA+AGG + tig0024440:17450-17469 None:intergenic 40.0%
CATAACTTGGAGTCAACAAC+TGG - tig0024440:17674-17693 Msa1417060:CDS 40.0%
TGGGTAATTGGGTAGACATA+TGG - tig0024440:17998-18017 Msa1417060:intron 40.0%
GGGTAATTGGGTAGACATAT+GGG - tig0024440:17999-18018 Msa1417060:intron 40.0%
AGAAGAAACCTGTAGAGAAG+TGG + tig0024440:18066-18085 None:intergenic 40.0%
CTTAGGCGTTTCATTTGTGA+AGG - tig0024440:18119-18138 Msa1417060:intron 40.0%
TGAACTATGTGTATCGTCTC+TGG - tig0024440:18268-18287 Msa1417060:CDS 40.0%
ACCTCAACAAGTGCTTTGTA+AGG - tig0024440:18355-18374 Msa1417060:CDS 40.0%
! ACCTTACAAAGCACTTGTTG+AGG + tig0024440:18359-18378 None:intergenic 40.0%
!! TACTGCTGTTCTGAAGTTCA+TGG - tig0024440:18388-18407 Msa1417060:CDS 40.0%
! TGTTTTGCTCCTCACAACAA+TGG - tig0024440:18428-18447 Msa1417060:CDS 40.0%
CAATTCTGTGATGATACAGC+TGG + tig0024440:18508-18527 None:intergenic 40.0%
! CATAGCTGAAAGAGCTTTTC+AGG + tig0024440:18568-18587 None:intergenic 40.0%
! GGCTTTTGATGTCATTATGG+AGG + tig0024440:18633-18652 None:intergenic 40.0%
CAAGTTATTGGCAAGAGTGA+AGG + tig0024440:18654-18673 None:intergenic 40.0%
!!! CACAGTTTTGGCTACAATCA+AGG + tig0024440:18867-18886 None:intergenic 40.0%
CAATAAACTTACGGCTATGC+TGG - tig0024440:18952-18971 Msa1417060:CDS 40.0%
!! GAGTATAATGGATGCAGTTG+GGG - tig0024440:18997-19016 Msa1417060:CDS 40.0%
! TGCAGTTGGGGATATTTTCT+TGG - tig0024440:19009-19028 Msa1417060:CDS 40.0%
! ACTTGTTGGGCTAGAACAAA+AGG - tig0024440:19039-19058 Msa1417060:CDS 40.0%
AGAACAAAAGGACTTTGAGC+TGG - tig0024440:19051-19070 Msa1417060:CDS 40.0%
TTAATCGTGATGACAGGGAT+TGG - tig0024440:19110-19129 Msa1417060:CDS 40.0%
TAATCGTGATGACAGGGATT+GGG - tig0024440:19111-19130 Msa1417060:CDS 40.0%
!! GTGATGGATTCGTAGAGAGA+GGG + tig0024440:13864-13883 None:intergenic 45.0%
! GGATTGAATTGTGGTGGTGA+TGG + tig0024440:13880-13899 None:intergenic 45.0%
GAGGAAGGATTGAATTGTGG+TGG + tig0024440:13886-13905 None:intergenic 45.0%
CGATTCGAGAAGATTGAGGA+AGG + tig0024440:13901-13920 None:intergenic 45.0%
TCATGCAATGCTTGAACTCC+AGG + tig0024440:14122-14141 None:intergenic 45.0%
! GCGGATTCGATTTTGTCTTC+GGG - tig0024440:14161-14180 Msa1417060:CDS 45.0%
! CGGATTCGATTTTGTCTTCG+GGG - tig0024440:14162-14181 Msa1417060:CDS 45.0%
! ATGGTGGAAGGAGAATTTGC+CGG - tig0024440:14205-14224 Msa1417060:CDS 45.0%
!! CTTCGAAGATGAGAGTATCG+AGG - tig0024440:14346-14365 Msa1417060:CDS 45.0%
!! TTTGGGTTGAGTGATCAGCT+TGG - tig0024440:14452-14471 Msa1417060:CDS 45.0%
!! TTGGGTTGAGTGATCAGCTT+GGG - tig0024440:14453-14472 Msa1417060:CDS 45.0%
ATTCGTTCGCAGATTCCGTA+TGG - tig0024440:14494-14513 Msa1417060:CDS 45.0%
!! AACATCGACTTCCGTCCATA+CGG + tig0024440:14512-14531 None:intergenic 45.0%
AAGTCGATGTTGGAGGCTTA+TGG - tig0024440:14521-14540 Msa1417060:CDS 45.0%
AGTCGATGTTGGAGGCTTAT+GGG - tig0024440:14522-14541 Msa1417060:CDS 45.0%
AAGCTGTGCCAGAAGATTCA+AGG - tig0024440:14567-14586 Msa1417060:CDS 45.0%
GGTTCTATCCATGCAAGTTC+TGG - tig0024440:14629-14648 Msa1417060:CDS 45.0%
TAATCAGAGGACCGTAGATG+GGG - tig0024440:14694-14713 Msa1417060:intron 45.0%
TTGCCGAGCCAGTCATATTT+CGG - tig0024440:14738-14757 Msa1417060:intron 45.0%
! AGACCGAAATATGACTGGCT+CGG + tig0024440:14744-14763 None:intergenic 45.0%
TGCAGAGACCGAAATATGAC+TGG + tig0024440:14749-14768 None:intergenic 45.0%
AGTCATATTTCGGTCTCTGC+AGG - tig0024440:14748-14767 Msa1417060:intron 45.0%
ATCTTATGACTTTCGAGGCC+TGG - tig0024440:15020-15039 Msa1417060:intron 45.0%
CGATGCCTCAAAAGAGGATA+AGG - tig0024440:15325-15344 Msa1417060:CDS 45.0%
GTCTCATGATGTATGCAACG+AGG - tig0024440:15517-15536 Msa1417060:intron 45.0%
CCTTAAGGACTTCATGAGAG+TGG + tig0024440:15589-15608 None:intergenic 45.0%
CCACTCTCATGAAGTCCTTA+AGG - tig0024440:15586-15605 Msa1417060:intron 45.0%
AGCATTAAGTGACCCAGTCT+TGG + tig0024440:15620-15639 None:intergenic 45.0%
AAGACTGGGTCACTTAATGC+TGG - tig0024440:15619-15638 Msa1417060:intron 45.0%
CCATAGCAACTTGTACTGTG+AGG + tig0024440:15652-15671 None:intergenic 45.0%
CCTCACAGTACAAGTTGCTA+TGG - tig0024440:15649-15668 Msa1417060:intron 45.0%
CGTTGTTGTGTGATTCCTGT+AGG - tig0024440:15801-15820 Msa1417060:intron 45.0%
TGTTGTGTGATTCCTGTAGG+TGG - tig0024440:15804-15823 Msa1417060:intron 45.0%
GTAAAAAGGTCTCCAATGGC+CGG - tig0024440:15964-15983 Msa1417060:intron 45.0%
! CAAAATATTGCACCGGCCAT+TGG + tig0024440:15979-15998 None:intergenic 45.0%
! GGTCAAAGCATTCCTGAGTT+TGG - tig0024440:16047-16066 Msa1417060:intron 45.0%
GCTGAATGCAGATCAGATAG+AGG - tig0024440:16086-16105 Msa1417060:intron 45.0%
!! TTGAGGGCATCCATATAGCA+TGG + tig0024440:16159-16178 None:intergenic 45.0%
ATGCTATATGGATGCCCTCA+AGG - tig0024440:16158-16177 Msa1417060:CDS 45.0%
CTGCAATGAGTAACTCCTTG+AGG + tig0024440:16176-16195 None:intergenic 45.0%
CTCATTGCAGAGAAAGTGGA+AGG - tig0024440:16186-16205 Msa1417060:CDS 45.0%
GTTTGTCCAGATAATGTGGC+AGG - tig0024440:16270-16289 Msa1417060:CDS 45.0%
AGAAGTCCTGCCACATTATC+TGG + tig0024440:16279-16298 None:intergenic 45.0%
AGTGTTGTCACAAACTGCCA+TGG - tig0024440:16312-16331 Msa1417060:CDS 45.0%
GATTGGCGATCAACATCTTC+AGG + tig0024440:16342-16361 None:intergenic 45.0%
CTTATGCAGCAGGGTTGTTA+AGG + tig0024440:16427-16446 None:intergenic 45.0%
CTTAACAACCCTGCTGCATA+AGG - tig0024440:16425-16444 Msa1417060:CDS 45.0%
TAGTAGCTGTAGGAGTTGCA+TGG - tig0024440:16595-16614 Msa1417060:CDS 45.0%
! TAGAGACTTGCTTCAGCATG+AGG - tig0024440:16623-16642 Msa1417060:CDS 45.0%
! GAAGTCAGCATTGAGCATTG+TGG - tig0024440:16714-16733 Msa1417060:CDS 45.0%
AGGGCCATATATGCCAAAAC+AGG + tig0024440:16765-16784 None:intergenic 45.0%
AACCGTCATTTGCAGAGCAA+GGG + tig0024440:16784-16803 None:intergenic 45.0%
GCATGTCAAAGCCAAATTGC+TGG - tig0024440:16980-16999 Msa1417060:CDS 45.0%
!! GCAGCGAATTTTGACCATTC+TGG - tig0024440:17297-17316 Msa1417060:intron 45.0%
GATGCAGACAACCAAAATCC+AGG + tig0024440:17366-17385 None:intergenic 45.0%
! AGATAGCCTTCGCCTTTTTG+TGG + tig0024440:17750-17769 None:intergenic 45.0%
AGGCTATCTCTGACAAATGC+TGG - tig0024440:17761-17780 Msa1417060:intron 45.0%
GGCTATCTCTGACAAATGCT+GGG - tig0024440:17762-17781 Msa1417060:intron 45.0%
AATGCTGGGTACCCAAGTAA+TGG - tig0024440:17776-17795 Msa1417060:intron 45.0%
! GTGCTCAAGTTGCATGCATT+TGG + tig0024440:17871-17890 None:intergenic 45.0%
ACTTGAGCACACTGCGAAAT+AGG - tig0024440:17881-17900 Msa1417060:intron 45.0%
AATTCTGGCCACTTCTCTAC+AGG - tig0024440:18055-18074 Msa1417060:intron 45.0%
! GTGAAGGAATATGGCCCTTT+TGG - tig0024440:18135-18154 Msa1417060:intron 45.0%
GTTGTGAGGAGCAAAACACA+TGG + tig0024440:18426-18445 None:intergenic 45.0%
TGTCATTATGGAGGATCCAC+CGG + tig0024440:18624-18643 None:intergenic 45.0%
AAAACTACATCAGGCAGCCA+AGG + tig0024440:18749-18768 None:intergenic 45.0%
! TTGGCTGCCTGATGTAGTTT+TGG - tig0024440:18748-18767 Msa1417060:CDS 45.0%
!!! CCTGATGTAGTTTTGGCACT+GGG - tig0024440:18755-18774 Msa1417060:CDS 45.0%
GTTCTACAACACACCGAAAG+TGG - tig0024440:18788-18807 Msa1417060:CDS 45.0%
! GCTACAATCAAGGGCCATTT+TGG + tig0024440:18857-18876 None:intergenic 45.0%
TCTGCAGTGAATGAAGGTGA+AGG - tig0024440:18890-18909 Msa1417060:CDS 45.0%
GTGAATGAAGGTGAAGGAGA+TGG - tig0024440:18896-18915 Msa1417060:CDS 45.0%
AAGGACTTTGAGCTGGCATT+AGG - tig0024440:19058-19077 Msa1417060:CDS 45.0%
AATCGTGATGACAGGGATTG+GGG - tig0024440:19112-19131 Msa1417060:CDS 45.0%
!!! AATTATAATTTTGTTTTAAA+AGG - tig0024440:17953-17972 Msa1417060:intron 5.0%
TGGATTCGTAGAGAGAGGGA+GGG + tig0024440:13860-13879 None:intergenic 50.0%
ATGGATTCGTAGAGAGAGGG+AGG + tig0024440:13861-13880 None:intergenic 50.0%
!! GGTGATGGATTCGTAGAGAG+AGG + tig0024440:13865-13884 None:intergenic 50.0%
! GGGAGGGGTTTGGAGATTTT+CGG + tig0024440:13931-13950 None:intergenic 50.0%
!! TGGTGTTTTTGCGGGAAGAG+CGG + tig0024440:13968-13987 None:intergenic 50.0%
!!! TGGTGGTGGTGGTGTTTTTG+CGG + tig0024440:13977-13996 None:intergenic 50.0%
! ATCGGATTGGGAACTGGGTT+CGG + tig0024440:14000-14019 None:intergenic 50.0%
ATGCGTTTCGCATCCGAGAA+AGG - tig0024440:14073-14092 Msa1417060:CDS 50.0%
GAAATCAACGATTCGCGCTC+CGG + tig0024440:14227-14246 None:intergenic 50.0%
GTTGAGTGATCAGCTTGGGA+AGG - tig0024440:14457-14476 Msa1417060:CDS 50.0%
! TCAGCTTGGGAAGGAGCTTT+TGG - tig0024440:14466-14485 Msa1417060:CDS 50.0%
GTTCGCAGATTCCGTATGGA+CGG - tig0024440:14498-14517 Msa1417060:CDS 50.0%
GTATGGACGGAAGTCGATGT+TGG - tig0024440:14511-14530 Msa1417060:CDS 50.0%
GTCGATGTTGGAGGCTTATG+GGG - tig0024440:14523-14542 Msa1417060:CDS 50.0%
GTGCCAGAAGATTCAAGGAG+TGG - tig0024440:14572-14591 Msa1417060:CDS 50.0%
TATGACTTTCGAGGCCTGGT+TGG - tig0024440:15024-15043 Msa1417060:intron 50.0%
!! TGAGGCATCGGGATCTTCAA+GGG + tig0024440:15315-15334 None:intergenic 50.0%
!! TTGAGGCATCGGGATCTTCA+AGG + tig0024440:15316-15335 None:intergenic 50.0%
AGATCCCGATGCCTCAAAAG+AGG - tig0024440:15319-15338 Msa1417060:CDS 50.0%
! GTCTTGGACAGAGCACCTTA+AGG + tig0024440:15604-15623 None:intergenic 50.0%
! TAAGGTGCTCTGTCCAAGAC+TGG - tig0024440:15604-15623 Msa1417060:intron 50.0%
! AAGGTGCTCTGTCCAAGACT+GGG - tig0024440:15605-15624 Msa1417060:intron 50.0%
TGTGTGATTCCTGTAGGTGG+TGG - tig0024440:15807-15826 Msa1417060:intron 50.0%
! AGCTACAGGAGGTTGATCAC+TGG + tig0024440:15860-15879 None:intergenic 50.0%
! GTTAGCTTCTGAGCTACAGG+AGG + tig0024440:15871-15890 None:intergenic 50.0%
TCCTCAACGGGCACTATTGA+GGG + tig0024440:15919-15938 None:intergenic 50.0%
CGATTACATGCCTCCTCAAC+GGG + tig0024440:15931-15950 None:intergenic 50.0%
GCGATTACATGCCTCCTCAA+CGG + tig0024440:15932-15951 None:intergenic 50.0%
TGCAAGTATGCCATCTCGGA+AGG - tig0024440:15997-16016 Msa1417060:intron 50.0%
TTTAGACGCTCCTTCCGAGA+TGG + tig0024440:16010-16029 None:intergenic 50.0%
! ATAGGCAGCCTTATGCAGCA+GGG + tig0024440:16436-16455 None:intergenic 50.0%
GTAGCTGTAACACTGTGGGA+TGG + tig0024440:16489-16508 None:intergenic 50.0%
TGCTTCAGCATGAGGATACC+AGG - tig0024440:16631-16650 Msa1417060:CDS 50.0%
CAACCGTCATTTGCAGAGCA+AGG + tig0024440:16785-16804 None:intergenic 50.0%
AGGAGCAAAACACATGGCAG+TGG + tig0024440:18420-18439 None:intergenic 50.0%
! GTGATACTGACTGATTCCGG+TGG - tig0024440:18605-18624 Msa1417060:CDS 50.0%
!!! GCCTGATGTAGTTTTGGCAC+TGG - tig0024440:18754-18773 Msa1417060:CDS 50.0%
CCCAGTGCCAAAACTACATC+AGG + tig0024440:18758-18777 None:intergenic 50.0%
!! CACTGCAGAGAGCACAGTTT+TGG + tig0024440:18879-18898 None:intergenic 50.0%
GTGCTCTCTGCAGTGAATGA+AGG - tig0024440:18884-18903 Msa1417060:CDS 50.0%
AGGGGTTGCTTGAACCTCTT+TGG - tig0024440:19236-19255 Msa1417060:CDS 50.0%
!! TGTTTTTGCGGGAAGAGCGG+CGG + tig0024440:13965-13984 None:intergenic 55.0%
!!! GGTGGTGGTGGTGTTTTTGC+GGG + tig0024440:13976-13995 None:intergenic 55.0%
TGGACGGAAGTCGATGTTGG+AGG - tig0024440:14514-14533 Msa1417060:CDS 55.0%
!! AGGCATCGGGATCTTCAAGG+GGG + tig0024440:15313-15332 None:intergenic 55.0%
!! GAGGCATCGGGATCTTCAAG+GGG + tig0024440:15314-15333 None:intergenic 55.0%
CATCGAGAACCACCACCTAC+AGG + tig0024440:15819-15838 None:intergenic 55.0%
TCCCTCAATAGTGCCCGTTG+AGG - tig0024440:15915-15934 Msa1417060:intron 55.0%
CTCCTCAACGGGCACTATTG+AGG + tig0024440:15920-15939 None:intergenic 55.0%
CTCAATAGTGCCCGTTGAGG+AGG - tig0024440:15918-15937 Msa1417060:intron 55.0%
! GATAGGCAGCCTTATGCAGC+AGG + tig0024440:16437-16456 None:intergenic 55.0%
GGCCCTTGCTCTGCAAATGA+CGG - tig0024440:16779-16798 Msa1417060:CDS 55.0%
GCTGGGTACCCAAGTAATGG+AGG - tig0024440:17779-17798 Msa1417060:intron 55.0%
TTGTTGCAGCCGCAAAGCCT+TGG - tig0024440:18729-18748 Msa1417060:CDS 55.0%
ATCAGGCAGCCAAGGCTTTG+CGG + tig0024440:18741-18760 None:intergenic 55.0%
!! TTGGGAACTGGGTTCGGTGG+TGG + tig0024440:13994-14013 None:intergenic 60.0%
GGATTGGGAACTGGGTTCGG+TGG + tig0024440:13997-14016 None:intergenic 60.0%
CGAGCACGTGCTCAACTGCT+TGG - tig0024440:17601-17620 Msa1417060:CDS 60.0%
TTTGCGGGAAGAGCGGCGGA+GGG + tig0024440:13961-13980 None:intergenic 65.0%
! TTTTGCGGGAAGAGCGGCGG+AGG + tig0024440:13962-13981 None:intergenic 65.0%
!! ACTGGGTTCGGTGGTGGTGG+TGG + tig0024440:13988-14007 None:intergenic 65.0%
!! GGAACTGGGTTCGGTGGTGG+TGG + tig0024440:13991-14010 None:intergenic 65.0%
! GGGTGGCGGTGGGAGGGGTT+TGG + tig0024440:13941-13960 None:intergenic 75.0%
GGAAGAGCGGCGGAGGGTGG+CGG + tig0024440:13955-13974 None:intergenic 75.0%
!! GCGGAGGGTGGCGGTGGGAG+GGG + tig0024440:13946-13965 None:intergenic 80.0%
!! GGCGGAGGGTGGCGGTGGGA+GGG + tig0024440:13947-13966 None:intergenic 80.0%
!! GAGCGGCGGAGGGTGGCGGT+GGG + tig0024440:13951-13970 None:intergenic 80.0%
!! AGAGCGGCGGAGGGTGGCGG+TGG + tig0024440:13952-13971 None:intergenic 80.0%
! GCGGGAAGAGCGGCGGAGGG+TGG + tig0024440:13958-13977 None:intergenic 80.0%
!! CGGCGGAGGGTGGCGGTGGG+AGG + tig0024440:13948-13967 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
tig0024440 gene 13711 19312 13711 ID=Msa1417060;Name=Msa1417060
tig0024440 mRNA 13711 19312 13711 ID=Msa1417060-mRNA-1;Parent=Msa1417060;Name=Msa1417060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.4|0.16|0.83|1|1|6|0|1270
tig0024440 exon 18254 19312 18254 ID=Msa1417060-mRNA-1:exon:23176;Parent=Msa1417060-mRNA-1
tig0024440 exon 17302 17766 17302 ID=Msa1417060-mRNA-1:exon:23175;Parent=Msa1417060-mRNA-1
tig0024440 exon 16132 17200 16132 ID=Msa1417060-mRNA-1:exon:23174;Parent=Msa1417060-mRNA-1
tig0024440 exon 15536 15561 15536 ID=Msa1417060-mRNA-1:exon:23173;Parent=Msa1417060-mRNA-1
tig0024440 exon 15223 15442 15223 ID=Msa1417060-mRNA-1:exon:23172;Parent=Msa1417060-mRNA-1
tig0024440 exon 13711 14684 13711 ID=Msa1417060-mRNA-1:exon:23171;Parent=Msa1417060-mRNA-1
tig0024440 CDS 18254 19312 18254 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
tig0024440 CDS 17302 17766 17302 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
tig0024440 CDS 16132 17200 16132 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
tig0024440 CDS 15536 15561 15536 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
tig0024440 CDS 15223 15442 15223 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
tig0024440 CDS 13711 14684 13711 ID=Msa1417060-mRNA-1:cds;Parent=Msa1417060-mRNA-1
Gene Sequence

>Msa1417060

ATGGAGAAGAAGCTTCGTTCATCTCTCAATTCTTCACCACAAGAATTCATCTCTTTAGCCACAACCTTAACCCTAAAATCCTCTAAATCCTCTCTCAAAACCCTAATTCATTCAATCAAACCCTCTTCCAATCTCATTTCTTCACTCCCTCCCTCTCTCTACGAATCCATCACCACCACAATTCAATCCTTCCTCAATCTTCTCGAATCGAACAATTCCGAAAATCTCCAAACCCCTCCCACCGCCACCCTCCGCCGCTCTTCCCGCAAAAACACCACCACCACCACCGAACCCAGTTCCCAATCCGATGAAAAACATAAAATTCTCGAAAAACTTCAAATTCTCGCTCACATTTCGTTTCTATGCGTTTCGCATCCGAGAAAGGTTTTTGATTTTTCTGATTTGCTACCTGGAGTTCAAGCATTGCATGATAATTTGATTGTTTTGGAAGCGGATTCGATTTTGTCTTCGGGGATTGAGACTATATGTGAAGAATGGTGGAAGGAGAATTTGCCGGAGCGCGAATCGTTGATTTCTCAGACATTACCTTTTGTTCTATCGAGATCGTTGACATTGAAGAAAAAAGTGGATGTGCATAGGGTTTATATGTTTCGCGAGGCTTTCGCGTTGTTTGACTTCGAAGATGAGAGTATCGAGGATTTGAAACTGTTGTTAAACAGGTGTGTAATTTCGCCTTTATATTTGAAAACAGAAGATGGAAGAAAGTTTCTGGCTTTTTTGTTTGGGTTGAGTGATCAGCTTGGGAAGGAGCTTTTGGCGATGATTCGTTCGCAGATTCCGTATGGACGGAAGTCGATGTTGGAGGCTTATGGGGATATATTGTTTCGAGCATGGAAAGCTGTGCCAGAAGATTCAAGGAGTGGAATTGAGAATGGGTTCTTGCAGGATTTGATTGAGGGTTCTATCCATGCAAGTTCTGGAACTTTTGCTTTGTATATTAGAAGGGTTTTGGGAGGGTTTATTAATCAGAGGACCGTAGATGGGGTTGAGAAACTACTCTATCGACTTGCCGAGCCAGTCATATTTCGGTCTCTGCAGGCTGCAAACTCAAATGTTCGACAGAATGCTTTGCATCTGCTTTTGGACATATTCCCCCTTGAAGATCCCGATGCCTCAAAAGAGGATAAGGATACATTGCTTGATAAGCAGTTCTTTTTGTTAGAAAAGTTGCTTGTTGACGATTGTCCAGAAGTTAGAACAATTGCTGTTGAGGGTTCTTGTCGTGTCCTTCATCTATTTTGGGAAATTATTCCGTCACCAATTATAACAAAGATGCTTACAAAAGTAATTAGTGACATGTCTCATGATGTATGCAACGAGGTAAGGCTTTCTACGTTGAATGGCATCATTTATTTGCTTGACAATCCCCACTCTCATGAAGTCCTTAAGGTGCTCTGTCCAAGACTGGGTCACTTAATGCTGGATAATGTCCTCACAGTACAAGTTGCTATGGCAGAGCTCTTGCTCCATCTAAATGATATTCAAAATTTTCAGTTTAACAAGGTGGTGGTTCTCGATGTGCTTTTGTCTGTGCTTGCCAGTGATCAACCTCCTGTAGCTCAGAAGCTAACAAAACTGCTTATACCTTCGTACTTTCCCTCAATAGTGCCCGTTGAGGAGGCATGTAATCGCTGCATTACACTAGTAAAAAGGTCTCCAATGGCCGGTGCAATATTTTGCAAGTATGCCATCTCGGAAGGAGCGTCTAAAACTCATCTTATGGAACTGGTCAAAGCATTCCTGAGTTTGGTTTTGTCACAAGATAAGCTGAATGCAGATCAGATAGAGGGCTTTCTTATTGCTGCTAGCTATCTTTGTGATAACTTAGTCAGTGAACCATGCTATATGGATGCCCTCAAGGAGTTACTCATTGCAGAGAAAGTGGAAGGTTTACTAACTGGGGCATCTACGGAACAAGCTCAATCATCTTTATTCAACATTTTCTCCACTGTTTGTCCAGATAATGTGGCAGGACTTCTTGAAGAGTGCATGAGTGTTGTCACAAACTGCCATGGTTTACCTGAAGATGTTGATCGCCAATCTAAAATTAGGTCTGCACATAAGTTGTTGCTTTCTTTGGGAGGTTTTGATGACATGTTTGAAGCCTTAACAACCCTGCTGCATAAGGCTGCCTATCGTTGTCACATTAAATTTGGGGCAGACATGCCATCCCACAGTGTTACAGCTACTAAAAGGAAAAAATCTAAATCCTCTGGAAAATTTTCAATTAAATCGAAGATAATTAACAGAAAGCAATCTTTTGAAGATGATTATTTAGTAGCTGTAGGAGTTGCATGGCAAGTTAGAGACTTGCTTCAGCATGAGGATACCAGGAAAGCAATCTTTAGATCTCAACCTTTAGAAATGTTGTTTTTTTCGCTTAAGATGGTATCTGAAGTCAGCATTGAGCATTGTGGGCAGTATGAATACATAGACATATCTCCTGTTTTGGCATATATGGCCCTTGCTCTGCAAATGACGGTTGATAATGTTGGCACAAGTAGTGAAAAGAATGGTGATTCCAAGGGGAAGAAAACTAAGATTGATTCTTCTACATTACTTTCAGAGGCAAGTTTCCGGCATGATTGTTATGATATTACTGTATTGGATCTGACAATCGAGCACGTGCTCAACTGCTTGGAAAAACTATTTGGATCAGATGACACTGTACAATATCACAATGTGGATTCACATAACTTGGAGTCAACAACTGGGAAAAATCGAAGTTCCAAAAAAAGGAAGAAAACAGGGAAAAATCAAAATTCCACAAAAAGGCGAAGGCTATCTCTGACAAATGCTGGGTACCCAAGTAATGGAGGATCTGTACACAATGAACCTCAACAAGTGCTTTGTAAGGTGAAGATGATTACTGCTGTTCTGAAGTTCATGGCTGATGCCACTGCCATGTGTTTTGCTCCTCACAACAATGGATTATTCTTGAATAATACCTCAAAATGCATACAACATATCTTGTCTTCATTGAACCAGCTGTATCATCACAGAATTGAATTTGAGGAAGAGGATAAAAAAAATACTATATTTTGCCTGAAAAGCTCTTTCAGCTATGCTGCAAAAATACTCAATGTGATACTGACTGATTCCGGTGGATCCTCCATAATGACATCAAAAGCCTTCACTCTTGCCAATAACTTGCTTGATTTAATTGTTTCAACTGAATCATGTTTGGGCTCTGCATATGCATCACGTCTTGTTGCAGCCGCAAAGCCTTGGCTGCCTGATGTAGTTTTGGCACTGGGATCTGAAAGTGTTCTACAACACACCGAAAGTGGAAGTGAACATTTAACTGCTTCTGAACAAATGAAGTTACAATTTCCAAAATGGCCCTTGATTGTAGCCAAAACTGTGCTCTCTGCAGTGAATGAAGGTGAAGGAGATGGTGAATGCTCTCAACCAGATAAATTCTCGACATTCAATAAACTTACGGCTATGCTGGTTATATTACTTAAAAAGAATAAGAGTATAATGGATGCAGTTGGGGATATTTTCTTGGTTTGTTCACTTGTTGGGCTAGAACAAAAGGACTTTGAGCTGGCATTAGGACTCTTGCAGTTTGTATGTTCCAAGTTGTTTAATCGTGATGACAGGGATTGGGGTGACATGATGTTATCTTCTCTGGAAGAAATCTATCATAAGATAGAGAGGCAAATTACAGAAGCTAGTAATAACGATGAACTGGAGAAATTGATGCATGTAAAGGGGTTGCTTGAACCTCTTTGGACGTATCATCTATATGAAACTGGAAAGGTCAACATGACTGATGACTATAATTAG

Protein sequence

>Msa1417060

MEKKLRSSLNSSPQEFISLATTLTLKSSKSSLKTLIHSIKPSSNLISSLPPSLYESITTTIQSFLNLLESNNSENLQTPPTATLRRSSRKNTTTTTEPSSQSDEKHKILEKLQILAHISFLCVSHPRKVFDFSDLLPGVQALHDNLIVLEADSILSSGIETICEEWWKENLPERESLISQTLPFVLSRSLTLKKKVDVHRVYMFREAFALFDFEDESIEDLKLLLNRCVISPLYLKTEDGRKFLAFLFGLSDQLGKELLAMIRSQIPYGRKSMLEAYGDILFRAWKAVPEDSRSGIENGFLQDLIEGSIHASSGTFALYIRRVLGGFINQRTVDGVEKLLYRLAEPVIFRSLQAANSNVRQNALHLLLDIFPLEDPDASKEDKDTLLDKQFFLLEKLLVDDCPEVRTIAVEGSCRVLHLFWEIIPSPIITKMLTKVISDMSHDVCNEVRLSTLNGIIYLLDNPHSHEVLKVLCPRLGHLMLDNVLTVQVAMAELLLHLNDIQNFQFNKVVVLDVLLSVLASDQPPVAQKLTKLLIPSYFPSIVPVEEACNRCITLVKRSPMAGAIFCKYAISEGASKTHLMELVKAFLSLVLSQDKLNADQIEGFLIAASYLCDNLVSEPCYMDALKELLIAEKVEGLLTGASTEQAQSSLFNIFSTVCPDNVAGLLEECMSVVTNCHGLPEDVDRQSKIRSAHKLLLSLGGFDDMFEALTTLLHKAAYRCHIKFGADMPSHSVTATKRKKSKSSGKFSIKSKIINRKQSFEDDYLVAVGVAWQVRDLLQHEDTRKAIFRSQPLEMLFFSLKMVSEVSIEHCGQYEYIDISPVLAYMALALQMTVDNVGTSSEKNGDSKGKKTKIDSSTLLSEASFRHDCYDITVLDLTIEHVLNCLEKLFGSDDTVQYHNVDSHNLESTTGKNRSSKKRKKTGKNQNSTKRRRLSLTNAGYPSNGGSVHNEPQQVLCKVKMITAVLKFMADATAMCFAPHNNGLFLNNTSKCIQHILSSLNQLYHHRIEFEEEDKKNTIFCLKSSFSYAAKILNVILTDSGGSSIMTSKAFTLANNLLDLIVSTESCLGSAYASRLVAAAKPWLPDVVLALGSESVLQHTESGSEHLTASEQMKLQFPKWPLIVAKTVLSAVNEGEGDGECSQPDKFSTFNKLTAMLVILLKKNKSIMDAVGDIFLVCSLVGLEQKDFELALGLLQFVCSKLFNRDDRDWGDMMLSSLEEIYHKIERQITEASNNDELEKLMHVKGLLEPLWTYHLYETGKVNMTDDYN*