Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa1137830 | 0.805910 | 1.062421e-49 | -8.615850e-47 |
| Msa0018070 | Msa1137830 | 0.804826 | 1.792456e-49 | -8.615850e-47 |
| Msa0020390 | Msa1137830 | 0.816640 | 4.982388e-52 | -8.615850e-47 |
| Msa0061500 | Msa1137830 | 0.804960 | 1.680439e-49 | -8.615850e-47 |
| Msa0064920 | Msa1137830 | 0.804665 | 1.937241e-49 | -8.615850e-47 |
| Msa0078480 | Msa1137830 | 0.801134 | 1.039049e-48 | -8.615850e-47 |
| Msa0078640 | Msa1137830 | 0.800668 | 1.293672e-48 | -8.615850e-47 |
| Msa0090570 | Msa1137830 | 0.811563 | 6.577688e-51 | -8.615850e-47 |
| Msa0102140 | Msa1137830 | 0.815579 | 8.601723e-52 | -8.615850e-47 |
| Msa0106620 | Msa1137830 | 0.806545 | 7.807789e-50 | -8.615850e-47 |
| Msa0106710 | Msa1137830 | 0.813713 | 2.227061e-51 | -8.615850e-47 |
| Msa0118540 | Msa1137830 | 0.800391 | 1.473449e-48 | -8.615850e-47 |
| Msa0604290 | Msa1137830 | 0.833908 | 4.070701e-56 | -8.615850e-47 |
| Msa0623990 | Msa1137830 | 0.807026 | 6.180998e-50 | -8.615850e-47 |
| Msa0624060 | Msa1137830 | 0.812901 | 3.357325e-51 | -8.615850e-47 |
| Msa0629240 | Msa1137830 | 0.821922 | 3.119816e-53 | -8.615850e-47 |
| Msa0640940 | Msa1137830 | 0.800286 | 1.547593e-48 | -8.615850e-47 |
| Msa0641730 | Msa1137830 | 0.804336 | 2.268894e-49 | -8.615850e-47 |
| Msa0645530 | Msa1137830 | 0.836126 | 1.123285e-56 | -8.615850e-47 |
| Msa0651560 | Msa1137830 | 0.823624 | 1.253060e-53 | -8.615850e-47 |
| Msa0659210 | Msa1137830 | 0.808448 | 3.081320e-50 | -8.615850e-47 |
| Msa0672550 | Msa1137830 | 0.812407 | 4.305112e-51 | -8.615850e-47 |
| Msa0676130 | Msa1137830 | 0.804213 | 2.406697e-49 | -8.615850e-47 |
| Msa0676180 | Msa1137830 | 0.802541 | 5.342706e-49 | -8.615850e-47 |
| Msa0685090 | Msa1137830 | 0.836699 | 8.030621e-57 | -8.615850e-47 |
| Msa0694620 | Msa1137830 | 0.801693 | 7.983207e-49 | -8.615850e-47 |
| Msa0703660 | Msa1137830 | 0.811856 | 5.677562e-51 | -8.615850e-47 |
| Msa0705990 | Msa1137830 | 0.800509 | 1.394280e-48 | -8.615850e-47 |
| Msa0709120 | Msa1137830 | 0.830548 | 2.760228e-55 | -8.615850e-47 |
| Msa0711150 | Msa1137830 | 0.802902 | 4.501031e-49 | -8.615850e-47 |
| Msa0756380 | Msa1137830 | 0.846724 | 1.814129e-59 | -8.615850e-47 |
| Msa0763890 | Msa1137830 | 0.807879 | 4.073312e-50 | -8.615850e-47 |
| Msa0763920 | Msa1137830 | 0.823450 | 1.376426e-53 | -8.615850e-47 |
| Msa0789560 | Msa1137830 | 0.832679 | 8.239796e-56 | -8.615850e-47 |
| Msa0797250 | Msa1137830 | 0.803363 | 3.613420e-49 | -8.615850e-47 |
| Msa0808100 | Msa1137830 | 0.841091 | 5.861243e-58 | -8.615850e-47 |
| Msa0822500 | Msa1137830 | 0.808786 | 2.609735e-50 | -8.615850e-47 |
| Msa0124320 | Msa1137830 | 0.809300 | 2.025470e-50 | -8.615850e-47 |
| Msa0126790 | Msa1137830 | 0.820687 | 6.014376e-53 | -8.615850e-47 |
| Msa0130720 | Msa1137830 | 0.842401 | 2.644169e-58 | -8.615850e-47 |
| Msa0139670 | Msa1137830 | 0.831113 | 2.007009e-55 | -8.615850e-47 |
| Msa0152560 | Msa1137830 | 0.816244 | 6.112307e-52 | -8.615850e-47 |
| Msa0160960 | Msa1137830 | 0.800103 | 1.686052e-48 | -8.615850e-47 |
| Msa0171870 | Msa1137830 | 0.820037 | 8.474573e-53 | -8.615850e-47 |
| Msa0183760 | Msa1137830 | 0.800588 | 1.343158e-48 | -8.615850e-47 |
| Msa0183850 | Msa1137830 | 0.807476 | 4.962171e-50 | -8.615850e-47 |
| Msa0189530 | Msa1137830 | 0.801154 | 1.029216e-48 | -8.615850e-47 |
| Msa0218370 | Msa1137830 | 0.823162 | 1.606484e-53 | -8.615850e-47 |
| Msa0220730 | Msa1137830 | 0.841974 | 3.431156e-58 | -8.615850e-47 |
| Msa0223330 | Msa1137830 | 0.821093 | 4.850088e-53 | -8.615850e-47 |
| Msa0223340 | Msa1137830 | 0.810980 | 8.799010e-51 | -8.615850e-47 |
| Msa0232020 | Msa1137830 | 0.807821 | 4.192172e-50 | -8.615850e-47 |
| Msa0232340 | Msa1137830 | 0.800851 | 1.187344e-48 | -8.615850e-47 |
| Msa0233370 | Msa1137830 | 0.819319 | 1.236409e-52 | -8.615850e-47 |
| Msa0233380 | Msa1137830 | 0.801332 | 9.465928e-49 | -8.615850e-47 |
| Msa0371950 | Msa1137830 | 0.809686 | 1.673858e-50 | -8.615850e-47 |
| Msa0382370 | Msa1137830 | 0.870265 | 1.663214e-66 | -8.615850e-47 |
| Msa0388730 | Msa1137830 | 0.838508 | 2.758823e-57 | -8.615850e-47 |
| Msa0389210 | Msa1137830 | 0.827071 | 1.915442e-54 | -8.615850e-47 |
| Msa0395980 | Msa1137830 | 0.837572 | 4.803480e-57 | -8.615850e-47 |
| Msa0398200 | Msa1137830 | 0.806572 | 7.709090e-50 | -8.615850e-47 |
| Msa0403770 | Msa1137830 | 0.829294 | 5.579562e-55 | -8.615850e-47 |
| Msa0432160 | Msa1137830 | 0.869229 | 3.620888e-66 | -8.615850e-47 |
| Msa0440510 | Msa1137830 | 0.820332 | 7.255787e-53 | -8.615850e-47 |
| Msa0450400 | Msa1137830 | -0.844517 | 7.199859e-59 | -8.615850e-47 |
| Msa0455760 | Msa1137830 | 0.802203 | 6.271051e-49 | -8.615850e-47 |
| Msa0476680 | Msa1137830 | 0.875871 | 2.189588e-68 | -8.615850e-47 |
| Msa0481970 | Msa1137830 | 0.827247 | 1.738634e-54 | -8.615850e-47 |
| Msa0985180 | Msa1137830 | 0.810263 | 1.257669e-50 | -8.615850e-47 |
| Msa0985220 | Msa1137830 | 0.807764 | 4.309069e-50 | -8.615850e-47 |
| Msa0986510 | Msa1137830 | 0.817486 | 3.216093e-52 | -8.615850e-47 |
| Msa0992580 | Msa1137830 | 0.800176 | 1.629803e-48 | -8.615850e-47 |
| Msa0992600 | Msa1137830 | 0.812990 | 3.210263e-51 | -8.615850e-47 |
| Msa0994370 | Msa1137830 | 0.805019 | 1.633773e-49 | -8.615850e-47 |
| Msa1006010 | Msa1137830 | -0.824561 | 7.549325e-54 | -8.615850e-47 |
| Msa1024680 | Msa1137830 | 0.802441 | 5.602341e-49 | -8.615850e-47 |
| Msa1072900 | Msa1137830 | 0.810671 | 1.026724e-50 | -8.615850e-47 |
| Msa1076960 | Msa1137830 | 0.813269 | 2.787635e-51 | -8.615850e-47 |
| Msa1089450 | Msa1137830 | 0.804245 | 2.370142e-49 | -8.615850e-47 |
| Msa1089460 | Msa1137830 | 0.816141 | 6.443105e-52 | -8.615850e-47 |
| Msa1104560 | Msa1137830 | 0.800482 | 1.411669e-48 | -8.615850e-47 |
| Msa0241140 | Msa1137830 | 0.831594 | 1.527919e-55 | -8.615850e-47 |
| Msa0257490 | Msa1137830 | 0.824264 | 8.866587e-54 | -8.615850e-47 |
| Msa0259210 | Msa1137830 | 0.810001 | 1.431695e-50 | -8.615850e-47 |
| Msa0271790 | Msa1137830 | 0.816922 | 4.307084e-52 | -8.615850e-47 |
| Msa0278580 | Msa1137830 | 0.815223 | 1.031972e-51 | -8.615850e-47 |
| Msa0287870 | Msa1137830 | 0.802345 | 5.861729e-49 | -8.615850e-47 |
| Msa0296790 | Msa1137830 | 0.819123 | 1.370255e-52 | -8.615850e-47 |
| Msa0296820 | Msa1137830 | 0.814285 | 1.665485e-51 | -8.615850e-47 |
| Msa0317960 | Msa1137830 | 0.816025 | 6.839968e-52 | -8.615850e-47 |
| Msa0317970 | Msa1137830 | 0.824717 | 6.939918e-54 | -8.615850e-47 |
| Msa0336300 | Msa1137830 | 0.800582 | 1.347180e-48 | -8.615850e-47 |
| Msa0343850 | Msa1137830 | 0.806167 | 9.380741e-50 | -8.615850e-47 |
| Msa0362890 | Msa1137830 | 0.802642 | 5.092763e-49 | -8.615850e-47 |
| Msa1108710 | Msa1137830 | 0.801530 | 8.619999e-49 | -8.615850e-47 |
| Msa1122860 | Msa1137830 | 0.811932 | 5.466279e-51 | -8.615850e-47 |
| Msa1130400 | Msa1137830 | 0.803400 | 3.549057e-49 | -8.615850e-47 |
| Msa1137830 | Msa1188180 | 0.813287 | 2.762161e-51 | -8.615850e-47 |
| Msa1137830 | Msa1201640 | 0.805931 | 1.051767e-49 | -8.615850e-47 |
| Msa1137830 | Msa1206270 | 0.809339 | 1.986879e-50 | -8.615850e-47 |
| Msa1137830 | Msa1206290 | 0.806011 | 1.011905e-49 | -8.615850e-47 |
| Msa1137830 | Msa1221330 | 0.821292 | 4.362192e-53 | -8.615850e-47 |
| Msa1137830 | Msa1232740 | 0.806001 | 1.016589e-49 | -8.615850e-47 |
| Msa1137830 | Msa1234620 | 0.805628 | 1.217973e-49 | -8.615850e-47 |
| Msa1137830 | Msa1248830 | 0.801960 | 7.034584e-49 | -8.615850e-47 |
| Msa1137830 | Msa1254620 | 0.807018 | 6.204118e-50 | -8.615850e-47 |
| Msa1137830 | Msa1271130 | 0.873502 | 1.399665e-67 | -8.615850e-47 |
| Msa1137830 | Msa1283740 | 0.819309 | 1.243054e-52 | -8.615850e-47 |
| Msa1137830 | Msa1285550 | 0.815250 | 1.017640e-51 | -8.615850e-47 |
| Msa1137830 | Msa1297530 | 0.808179 | 3.517234e-50 | -8.615850e-47 |
| Msa1137830 | Msa1304810 | 0.802660 | 5.049691e-49 | -8.615850e-47 |
| Msa1137830 | Msa1305810 | 0.806876 | 6.649644e-50 | -8.615850e-47 |
| Msa1137830 | Msa1312520 | 0.801635 | 8.205370e-49 | -8.615850e-47 |
| Msa1137830 | Msa1313320 | 0.805746 | 1.150240e-49 | -8.615850e-47 |
| Msa1137830 | Msa1325410 | -0.810786 | 9.692966e-51 | -8.615850e-47 |
| Msa1137830 | Msa1336040 | 0.812307 | 4.527713e-51 | -8.615850e-47 |
| Msa1137830 | Msa1338400 | 0.817559 | 3.096188e-52 | -8.615850e-47 |
| Msa1137830 | Msa1369690 | 0.809505 | 1.830378e-50 | -8.615850e-47 |
| Msa1137830 | Msa1372280 | 0.802969 | 4.358237e-49 | -8.615850e-47 |
| Msa1137830 | Msa1372290 | 0.801555 | 8.520525e-49 | -8.615850e-47 |
| Msa1137830 | Msa1378410 | 0.814683 | 1.360005e-51 | -8.615850e-47 |
| Msa1137830 | Msa1390680 | 0.800514 | 1.390636e-48 | -8.615850e-47 |
| Msa1137830 | Msa1392890 | 0.800539 | 1.374180e-48 | -8.615850e-47 |
| Msa1137830 | Msa1394310 | 0.802229 | 6.195409e-49 | -8.615850e-47 |
| Msa1137830 | Msa1400930 | 0.826075 | 3.309010e-54 | -8.615850e-47 |
| Msa1137830 | Msa1401460 | 0.820404 | 6.984519e-53 | -8.615850e-47 |
| Msa1137830 | Msa1419840 | 0.815427 | 9.298476e-52 | -8.615850e-47 |
| Msa1137830 | Msa1426910 | 0.805423 | 1.344312e-49 | -8.615850e-47 |
| Msa1137830 | Msa1434040 | 0.810883 | 9.235307e-51 | -8.615850e-47 |
| Msa1137830 | Msa1442920 | 0.803779 | 2.961885e-49 | -8.615850e-47 |
| Msa1137830 | Msa1446080 | 0.812783 | 3.563426e-51 | -8.615850e-47 |
| Msa1137830 | Msa1450720 | 0.805895 | 1.070132e-49 | -8.615850e-47 |
| Msa1137830 | Msa1454890 | 0.802676 | 5.011537e-49 | -8.615850e-47 |
| Msa1137830 | Msa1454960 | 0.829433 | 5.160567e-55 | -8.615850e-47 |
| Msa1137830 | Msa1456230 | 0.801475 | 8.848889e-49 | -8.615850e-47 |
| Msa1137830 | Msa1458090 | 0.837028 | 6.616916e-57 | -8.615850e-47 |
| Msa1137830 | Msa1458680 | 0.801126 | 1.043119e-48 | -8.615850e-47 |
| Msa1137830 | Msa1460320 | -0.803263 | 3.789206e-49 | -8.615850e-47 |
| Msa1137830 | Msa1462360 | 0.817282 | 3.574681e-52 | -8.615850e-47 |
| Msa0491000 | Msa1137830 | 0.835724 | 1.420209e-56 | -8.615850e-47 |
| Msa0510840 | Msa1137830 | 0.804442 | 2.156094e-49 | -8.615850e-47 |
| Msa0516240 | Msa1137830 | 0.800810 | 1.210013e-48 | -8.615850e-47 |
| Msa0521010 | Msa1137830 | 0.880447 | 5.449919e-70 | -8.615850e-47 |
| Msa0542560 | Msa1137830 | 0.815604 | 8.489797e-52 | -8.615850e-47 |
| Msa0545050 | Msa1137830 | 0.806045 | 9.954287e-50 | -8.615850e-47 |
| Msa0549890 | Msa1137830 | 0.819811 | 9.545276e-53 | -8.615850e-47 |
| Msa0566750 | Msa1137830 | 0.802591 | 5.216256e-49 | -8.615850e-47 |
| Msa0581400 | Msa1137830 | 0.834787 | 2.449169e-56 | -8.615850e-47 |
| Msa0844110 | Msa1137830 | 0.810635 | 1.045164e-50 | -8.615850e-47 |
| Msa0855870 | Msa1137830 | 0.810747 | 9.886013e-51 | -8.615850e-47 |
| Msa0894710 | Msa1137830 | 0.806323 | 8.699293e-50 | -8.615850e-47 |
| Msa0921420 | Msa1137830 | 0.831813 | 1.349255e-55 | -8.615850e-47 |
| Msa0960390 | Msa1137830 | 0.831841 | 1.328009e-55 | -8.615850e-47 |
| Msa0974950 | Msa1137830 | 0.822720 | 2.036388e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTCAACAACGACTCTT+TGG | 0.323142 | 7_4:-6818130 | Msa1137830:intron |
| TACAAAGACAGGGACCAATT+TGG | 0.363523 | 7_4:-6818853 | Msa1137830:CDS |
| TTGGGAGTAAACCACCAAAT+TGG | 0.374281 | 7_4:+6818839 | None:intergenic |
| TCTTGCAGTTGTGCTTGAGC+AGG | 0.458357 | 7_4:-6817815 | Msa1137830:CDS |
| TGAGAATGGCTTACAAAGAC+AGG | 0.462803 | 7_4:-6818864 | None:intergenic |
| CATAGGACAACAACCAAATC+AGG | 0.467136 | 7_4:-6818176 | Msa1137830:intron |
| CAAATCAGGCAAAAGATCAT+TGG | 0.472983 | 7_4:-6818162 | Msa1137830:CDS |
| AAAGACAGGGACCAATTTGG+TGG | 0.516882 | 7_4:-6818850 | Msa1137830:intron |
| TTGATTGTGTTCTTGAGCAA+AGG | 0.535779 | 7_4:-6817785 | Msa1137830:CDS |
| TAGCTTGTGTGCTTGAGCAA+AGG | 0.600399 | 7_4:-6817755 | Msa1137830:CDS |
| ATCATCTGAACAAACGAGGG+AGG | 0.617476 | 7_4:-6818528 | Msa1137830:CDS |
| TTGCAGGTGATCAAGAGAGT+CGG | 0.619347 | 7_4:-6818573 | Msa1137830:intron |
| TCATCTGAACAAACGAGGGA+GGG | 0.623604 | 7_4:-6818527 | Msa1137830:intron |
| GAGAATGGCTTACAAAGACA+GGG | 0.659869 | 7_4:-6818863 | None:intergenic |
| CAGATCATCTGAACAAACGA+GGG | 0.691520 | 7_4:-6818531 | Msa1137830:CDS |
| ACAGATCATCTGAACAAACG+AGG | 0.713669 | 7_4:-6818532 | Msa1137830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAAATTTAGATTTTTTT+GGG | + | chr7_4:6817763-6817782 | None:intergenic | 10.0% |
| !!! | TGTTAATTTTAATATTTGTA+TGG | - | chr7_4:6817808-6817827 | Msa1137830:CDS | 10.0% |
| !!! | CTTCAATTTTTTTTTTTAAT+TGG | - | chr7_4:6817959-6817978 | Msa1137830:intron | 10.0% |
| !!! | GTTAAAATTTAGATTTTTTT+GGG | + | chr7_4:6817763-6817782 | None:intergenic | 10.0% |
| !!! | TGTTAATTTTAATATTTGTA+TGG | - | chr7_4:6817808-6817827 | Msa1137830:CDS | 10.0% |
| !!! | CTTCAATTTTTTTTTTTAAT+TGG | - | chr7_4:6817959-6817978 | Msa1137830:intron | 10.0% |
| !!! | GGTTAAAATTTAGATTTTTT+TGG | + | chr7_4:6817764-6817783 | None:intergenic | 15.0% |
| !!! | AATCTAAATTTTAACCTTTA+AGG | - | chr7_4:6817768-6817787 | Msa1137830:CDS | 15.0% |
| !!! | ATCTAAATTTTAACCTTTAA+GGG | - | chr7_4:6817769-6817788 | Msa1137830:CDS | 15.0% |
| !!! | GGTTAAAATTTAGATTTTTT+TGG | + | chr7_4:6817764-6817783 | None:intergenic | 15.0% |
| !!! | AATCTAAATTTTAACCTTTA+AGG | - | chr7_4:6817768-6817787 | Msa1137830:CDS | 15.0% |
| !!! | ATCTAAATTTTAACCTTTAA+GGG | - | chr7_4:6817769-6817788 | Msa1137830:CDS | 15.0% |
| !!! | ATTTCAAATTTGTTCTTCAT+AGG | - | chr7_4:6818388-6818407 | Msa1137830:intron | 20.0% |
| !! | ATTACACAGAAAATTGTTTA+AGG | + | chr7_4:6818727-6818746 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTGTTCTTCAT+AGG | - | chr7_4:6818388-6818407 | Msa1137830:intron | 20.0% |
| !! | ATTACACAGAAAATTGTTTA+AGG | + | chr7_4:6818727-6818746 | None:intergenic | 20.0% |
| ! | AACATGATCAATCAAAACAA+CGG | + | chr7_4:6817920-6817939 | None:intergenic | 25.0% |
| !!! | CTGTGTAATTTTGTTTAGTT+AGG | - | chr7_4:6818738-6818757 | Msa1137830:intron | 25.0% |
| ! | AACATGATCAATCAAAACAA+CGG | + | chr7_4:6817920-6817939 | None:intergenic | 25.0% |
| !!! | CTGTGTAATTTTGTTTAGTT+AGG | - | chr7_4:6818738-6818757 | Msa1137830:intron | 25.0% |
| ! | CAAAACAACGGTTTTTCTTA+AGG | + | chr7_4:6817908-6817927 | None:intergenic | 30.0% |
| TCTTTCACACCTCTATATAA+AGG | - | chr7_4:6818497-6818516 | Msa1137830:intron | 30.0% | |
| AACACTTGATATACAATCAG+AGG | + | chr7_4:6818701-6818720 | None:intergenic | 30.0% | |
| ! | CAAAACAACGGTTTTTCTTA+AGG | + | chr7_4:6817908-6817927 | None:intergenic | 30.0% |
| TCTTTCACACCTCTATATAA+AGG | - | chr7_4:6818497-6818516 | Msa1137830:intron | 30.0% | |
| AACACTTGATATACAATCAG+AGG | + | chr7_4:6818701-6818720 | None:intergenic | 30.0% | |
| !! | TGGTGATGTTTATGCGATTT+TGG | - | chr7_4:6817979-6817998 | Msa1137830:intron | 35.0% |
| !!! | GCGATTTTGGTTTATTTTGC+AGG | - | chr7_4:6817992-6818011 | Msa1137830:intron | 35.0% |
| TGACAACACTTTCGAAAACA+AGG | + | chr7_4:6818129-6818148 | None:intergenic | 35.0% | |
| !!! | GTTTTCGAAAGTGTTGTCAT+TGG | - | chr7_4:6818130-6818149 | Msa1137830:intron | 35.0% |
| CATAGATGTTCCTTTGGATA+AGG | - | chr7_4:6818360-6818379 | Msa1137830:intron | 35.0% | |
| ATGTTCCTTTGGATAAGGAA+TGG | - | chr7_4:6818365-6818384 | Msa1137830:intron | 35.0% | |
| GAAATCCATTCCTTATCCAA+AGG | + | chr7_4:6818373-6818392 | None:intergenic | 35.0% | |
| ! | CAATGATCTTTTGCCTGATT+TGG | + | chr7_4:6818421-6818440 | None:intergenic | 35.0% |
| CAAATCAGGCAAAAGATCAT+TGG | - | chr7_4:6818419-6818438 | Msa1137830:intron | 35.0% | |
| GTCTTCACTCCTTTATATAG+AGG | + | chr7_4:6818509-6818528 | None:intergenic | 35.0% | |
| TCTTGCATTACCAATTCTCT+AGG | + | chr7_4:6818531-6818550 | None:intergenic | 35.0% | |
| AAACAATTTCAGCAGAGGTT+TGG | + | chr7_4:6818590-6818609 | None:intergenic | 35.0% | |
| ATGCAAAACAATTTCAGCAG+AGG | + | chr7_4:6818595-6818614 | None:intergenic | 35.0% | |
| TTGATTGTGTTCTTGAGCAA+AGG | - | chr7_4:6818796-6818815 | Msa1137830:intron | 35.0% | |
| !! | TGGTGATGTTTATGCGATTT+TGG | - | chr7_4:6817979-6817998 | Msa1137830:intron | 35.0% |
| !!! | GCGATTTTGGTTTATTTTGC+AGG | - | chr7_4:6817992-6818011 | Msa1137830:intron | 35.0% |
| TGACAACACTTTCGAAAACA+AGG | + | chr7_4:6818129-6818148 | None:intergenic | 35.0% | |
| !!! | GTTTTCGAAAGTGTTGTCAT+TGG | - | chr7_4:6818130-6818149 | Msa1137830:intron | 35.0% |
| CATAGATGTTCCTTTGGATA+AGG | - | chr7_4:6818360-6818379 | Msa1137830:intron | 35.0% | |
| ATGTTCCTTTGGATAAGGAA+TGG | - | chr7_4:6818365-6818384 | Msa1137830:intron | 35.0% | |
| GAAATCCATTCCTTATCCAA+AGG | + | chr7_4:6818373-6818392 | None:intergenic | 35.0% | |
| ! | CAATGATCTTTTGCCTGATT+TGG | + | chr7_4:6818421-6818440 | None:intergenic | 35.0% |
| CAAATCAGGCAAAAGATCAT+TGG | - | chr7_4:6818419-6818438 | Msa1137830:intron | 35.0% | |
| GTCTTCACTCCTTTATATAG+AGG | + | chr7_4:6818509-6818528 | None:intergenic | 35.0% | |
| TCTTGCATTACCAATTCTCT+AGG | + | chr7_4:6818531-6818550 | None:intergenic | 35.0% | |
| AAACAATTTCAGCAGAGGTT+TGG | + | chr7_4:6818590-6818609 | None:intergenic | 35.0% | |
| ATGCAAAACAATTTCAGCAG+AGG | + | chr7_4:6818595-6818614 | None:intergenic | 35.0% | |
| TTGATTGTGTTCTTGAGCAA+AGG | - | chr7_4:6818796-6818815 | Msa1137830:intron | 35.0% | |
| TACAAAGACAGGGACCAATT+TGG | - | chr7_4:6817728-6817747 | Msa1137830:CDS | 40.0% | |
| TTGGGAGTAAACCACCAAAT+TGG | + | chr7_4:6817745-6817764 | None:intergenic | 40.0% | |
| ! | GCACTGTTCTTTTCCCTTAA+AGG | + | chr7_4:6817785-6817804 | None:intergenic | 40.0% |
| ACAGATCATCTGAACAAACG+AGG | - | chr7_4:6818049-6818068 | Msa1137830:intron | 40.0% | |
| CAGATCATCTGAACAAACGA+GGG | - | chr7_4:6818050-6818069 | Msa1137830:intron | 40.0% | |
| ACTTTCGAAAACAAGGAGAG+AGG | + | chr7_4:6818122-6818141 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGTCTTGTAGCG+TGG | + | chr7_4:6818317-6818336 | None:intergenic | 40.0% |
| ATCCAAAGGAACATCTATGC+AGG | + | chr7_4:6818359-6818378 | None:intergenic | 40.0% | |
| CATAGGACAACAACCAAATC+AGG | - | chr7_4:6818405-6818424 | Msa1137830:intron | 40.0% | |
| AAGCTTCAACAACGACTCTT+TGG | - | chr7_4:6818451-6818470 | Msa1137830:intron | 40.0% | |
| TACAAAGACAGGGACCAATT+TGG | - | chr7_4:6817728-6817747 | Msa1137830:CDS | 40.0% | |
| TTGGGAGTAAACCACCAAAT+TGG | + | chr7_4:6817745-6817764 | None:intergenic | 40.0% | |
| ! | GCACTGTTCTTTTCCCTTAA+AGG | + | chr7_4:6817785-6817804 | None:intergenic | 40.0% |
| ACAGATCATCTGAACAAACG+AGG | - | chr7_4:6818049-6818068 | Msa1137830:intron | 40.0% | |
| CAGATCATCTGAACAAACGA+GGG | - | chr7_4:6818050-6818069 | Msa1137830:intron | 40.0% | |
| ACTTTCGAAAACAAGGAGAG+AGG | + | chr7_4:6818122-6818141 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGTCTTGTAGCG+TGG | + | chr7_4:6818317-6818336 | None:intergenic | 40.0% |
| ATCCAAAGGAACATCTATGC+AGG | + | chr7_4:6818359-6818378 | None:intergenic | 40.0% | |
| CATAGGACAACAACCAAATC+AGG | - | chr7_4:6818405-6818424 | Msa1137830:intron | 40.0% | |
| AAGCTTCAACAACGACTCTT+TGG | - | chr7_4:6818451-6818470 | Msa1137830:intron | 40.0% | |
| AAAGACAGGGACCAATTTGG+TGG | - | chr7_4:6817731-6817750 | Msa1137830:CDS | 45.0% | |
| TTGCAGGTGATCAAGAGAGT+CGG | - | chr7_4:6818008-6818027 | Msa1137830:intron | 45.0% | |
| ATCATCTGAACAAACGAGGG+AGG | - | chr7_4:6818053-6818072 | Msa1137830:intron | 45.0% | |
| TCATCTGAACAAACGAGGGA+GGG | - | chr7_4:6818054-6818073 | Msa1137830:intron | 45.0% | |
| !! | TTGTCATTGGTTCGTGCTGT+TGG | - | chr7_4:6818143-6818162 | Msa1137830:CDS | 45.0% |
| !! | TGTCATTGGTTCGTGCTGTT+GGG | - | chr7_4:6818144-6818163 | Msa1137830:CDS | 45.0% |
| GGAGTGAAGACCTAGAGAAT+TGG | - | chr7_4:6818518-6818537 | Msa1137830:intron | 45.0% | |
| ! | TAGCTTGTGTGCTTGAGCAA+AGG | - | chr7_4:6818826-6818845 | Msa1137830:intron | 45.0% |
| AAAGACAGGGACCAATTTGG+TGG | - | chr7_4:6817731-6817750 | Msa1137830:CDS | 45.0% | |
| TTGCAGGTGATCAAGAGAGT+CGG | - | chr7_4:6818008-6818027 | Msa1137830:intron | 45.0% | |
| ATCATCTGAACAAACGAGGG+AGG | - | chr7_4:6818053-6818072 | Msa1137830:intron | 45.0% | |
| TCATCTGAACAAACGAGGGA+GGG | - | chr7_4:6818054-6818073 | Msa1137830:intron | 45.0% | |
| !! | TTGTCATTGGTTCGTGCTGT+TGG | - | chr7_4:6818143-6818162 | Msa1137830:CDS | 45.0% |
| !! | TGTCATTGGTTCGTGCTGTT+GGG | - | chr7_4:6818144-6818163 | Msa1137830:CDS | 45.0% |
| GGAGTGAAGACCTAGAGAAT+TGG | - | chr7_4:6818518-6818537 | Msa1137830:intron | 45.0% | |
| ! | TAGCTTGTGTGCTTGAGCAA+AGG | - | chr7_4:6818826-6818845 | Msa1137830:intron | 45.0% |
| !! | GTCATTGGTTCGTGCTGTTG+GGG | - | chr7_4:6818145-6818164 | Msa1137830:CDS | 50.0% |
| !! | TCATTGGTTCGTGCTGTTGG+GGG | - | chr7_4:6818146-6818165 | Msa1137830:CDS | 50.0% |
| ATGCAGGCGAAGCTGTATTC+TGG | + | chr7_4:6818343-6818362 | None:intergenic | 50.0% | |
| CGCCTGCATAGATGTTCCTT+TGG | - | chr7_4:6818354-6818373 | Msa1137830:intron | 50.0% | |
| ! | ACAACGACTCTTTGGTGTGC+TGG | - | chr7_4:6818459-6818478 | Msa1137830:intron | 50.0% |
| TCTTGCAGTTGTGCTTGAGC+AGG | - | chr7_4:6818766-6818785 | Msa1137830:intron | 50.0% | |
| !! | GTCATTGGTTCGTGCTGTTG+GGG | - | chr7_4:6818145-6818164 | Msa1137830:CDS | 50.0% |
| !! | TCATTGGTTCGTGCTGTTGG+GGG | - | chr7_4:6818146-6818165 | Msa1137830:CDS | 50.0% |
| ATGCAGGCGAAGCTGTATTC+TGG | + | chr7_4:6818343-6818362 | None:intergenic | 50.0% | |
| CGCCTGCATAGATGTTCCTT+TGG | - | chr7_4:6818354-6818373 | Msa1137830:intron | 50.0% | |
| ! | ACAACGACTCTTTGGTGTGC+TGG | - | chr7_4:6818459-6818478 | Msa1137830:intron | 50.0% |
| TCTTGCAGTTGTGCTTGAGC+AGG | - | chr7_4:6818766-6818785 | Msa1137830:intron | 50.0% | |
| !! | CGAGGGAGGGTACTAGTTTG+CGG | - | chr7_4:6818067-6818086 | Msa1137830:intron | 55.0% |
| !! | CGAGGGAGGGTACTAGTTTG+CGG | - | chr7_4:6818067-6818086 | Msa1137830:intron | 55.0% |
| !! | GGGAGGGTACTAGTTTGCGG+AGG | - | chr7_4:6818070-6818089 | Msa1137830:intron | 60.0% |
| !! | GGGAGGGTACTAGTTTGCGG+AGG | - | chr7_4:6818070-6818089 | Msa1137830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 6817722 | 6818881 | 6817722 | ID=Msa1137830;Name=Msa1137830 |
| chr7_4 | mRNA | 6817722 | 6818881 | 6817722 | ID=Msa1137830-mRNA-1;Parent=Msa1137830;Name=Msa1137830-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0|0|0|0.25|1|1|4|0|93 |
| chr7_4 | exon | 6818851 | 6818881 | 6818851 | ID=Msa1137830-mRNA-1:exon:1927;Parent=Msa1137830-mRNA-1 |
| chr7_4 | exon | 6818528 | 6818589 | 6818528 | ID=Msa1137830-mRNA-1:exon:1926;Parent=Msa1137830-mRNA-1 |
| chr7_4 | exon | 6818131 | 6818193 | 6818131 | ID=Msa1137830-mRNA-1:exon:1925;Parent=Msa1137830-mRNA-1 |
| chr7_4 | exon | 6817722 | 6817847 | 6817722 | ID=Msa1137830-mRNA-1:exon:1924;Parent=Msa1137830-mRNA-1 |
| chr7_4 | CDS | 6818851 | 6818881 | 6818851 | ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1 |
| chr7_4 | CDS | 6818528 | 6818589 | 6818528 | ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1 |
| chr7_4 | CDS | 6818131 | 6818193 | 6818131 | ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1 |
| chr7_4 | CDS | 6817722 | 6817847 | 6817722 | ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
