AlfalfaGEDB | Msa1137830

M. sativa cultivar zhongmu-4 / Msa1137830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa1137830	0.805910	1.062421e-49	-8.615850e-47
Msa0018070	Msa1137830	0.804826	1.792456e-49	-8.615850e-47
Msa0020390	Msa1137830	0.816640	4.982388e-52	-8.615850e-47
Msa0061500	Msa1137830	0.804960	1.680439e-49	-8.615850e-47
Msa0064920	Msa1137830	0.804665	1.937241e-49	-8.615850e-47
Msa0078480	Msa1137830	0.801134	1.039049e-48	-8.615850e-47
Msa0078640	Msa1137830	0.800668	1.293672e-48	-8.615850e-47
Msa0090570	Msa1137830	0.811563	6.577688e-51	-8.615850e-47
Msa0102140	Msa1137830	0.815579	8.601723e-52	-8.615850e-47
Msa0106620	Msa1137830	0.806545	7.807789e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 16 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGGGACCAATTTGG+TGG	0.516882	7_4:-6818850	Msa1137830:intron
AAGCTTCAACAACGACTCTT+TGG	0.323142	7_4:-6818130	Msa1137830:intron
ACAGATCATCTGAACAAACG+AGG	0.713669	7_4:-6818532	Msa1137830:CDS
ATCATCTGAACAAACGAGGG+AGG	0.617476	7_4:-6818528	Msa1137830:CDS
CAAATCAGGCAAAAGATCAT+TGG	0.472983	7_4:-6818162	Msa1137830:CDS
CAGATCATCTGAACAAACGA+GGG	0.691520	7_4:-6818531	Msa1137830:CDS
CATAGGACAACAACCAAATC+AGG	0.467136	7_4:-6818176	Msa1137830:intron
GAGAATGGCTTACAAAGACA+GGG	0.659869	7_4:-6818863	None:intergenic
TACAAAGACAGGGACCAATT+TGG	0.363523	7_4:-6818853	Msa1137830:CDS
TAGCTTGTGTGCTTGAGCAA+AGG	0.600399	7_4:-6817755	Msa1137830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTCACACCTCTATATAA+AGG	-	chr7_4:6818497-6818516	Msa1137830:intron	30.0%
AACACTTGATATACAATCAG+AGG	+	chr7_4:6818701-6818720	None:intergenic	30.0%
TCTTTCACACCTCTATATAA+AGG	-	chr7_4:6818497-6818516	Msa1137830:intron	30.0%
AACACTTGATATACAATCAG+AGG	+	chr7_4:6818701-6818720	None:intergenic	30.0%
TGACAACACTTTCGAAAACA+AGG	+	chr7_4:6818129-6818148	None:intergenic	35.0%
CATAGATGTTCCTTTGGATA+AGG	-	chr7_4:6818360-6818379	Msa1137830:intron	35.0%
ATGTTCCTTTGGATAAGGAA+TGG	-	chr7_4:6818365-6818384	Msa1137830:intron	35.0%
GAAATCCATTCCTTATCCAA+AGG	+	chr7_4:6818373-6818392	None:intergenic	35.0%
CAAATCAGGCAAAAGATCAT+TGG	-	chr7_4:6818419-6818438	Msa1137830:intron	35.0%
GTCTTCACTCCTTTATATAG+AGG	+	chr7_4:6818509-6818528	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	6817722	6818881	6817722	ID=Msa1137830;Name=Msa1137830
chr7_4	mRNA	6817722	6818881	6817722	ID=Msa1137830-mRNA-1;Parent=Msa1137830;Name=Msa1137830-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|93
chr7_4	exon	6818851	6818881	6818851	ID=Msa1137830-mRNA-1:exon:1927;Parent=Msa1137830-mRNA-1
chr7_4	exon	6818528	6818589	6818528	ID=Msa1137830-mRNA-1:exon:1926;Parent=Msa1137830-mRNA-1
chr7_4	exon	6818131	6818193	6818131	ID=Msa1137830-mRNA-1:exon:1925;Parent=Msa1137830-mRNA-1
chr7_4	exon	6817722	6817847	6817722	ID=Msa1137830-mRNA-1:exon:1924;Parent=Msa1137830-mRNA-1
chr7_4	CDS	6818851	6818881	6818851	ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1
chr7_4	CDS	6818528	6818589	6818528	ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1
chr7_4	CDS	6818131	6818193	6818131	ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1
chr7_4	CDS	6817722	6817847	6817722	ID=Msa1137830-mRNA-1:cds;Parent=Msa1137830-mRNA-1

Gene Sequence	>Msa1137830 ATGGCTTACAAAGACAGGGACCAATTTGGTGGTGATCAAGAGAGTCGGAATCTAGTTATTCATATTACAGATCATCTGAACAAACGAGGGAGGGACAACAACCAAATCAGGCAAAAGATCATTGGTGAAAGATCAAGCTTCAACAACGACTCTTTGTTAGGAAGTCTCTTGCAGTTGTGCTTGAGCAGGAAGTCTCTTGATTGTGTTCTTGAGCAAAGGAAGTCTCTAGCTTGTGTGCTTGAGCAAAGGAAGTCTCTTGCTTGTGTGCTTGAGCATTTGTAA
Protein sequence	>Msa1137830 MAYKDRDQFGGDQESRNLVIHITDHLNKRGRDNNQIRQKIIGERSSFNNDSLLGSLLQLCLSRKSLDCVLEQRKSLACVLEQRKSLACVLEHL*