AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269280 MtrunA17_Chr1g0167641 88.493 365 21 9 1 357 1 352 0.0 618
Msa0269280 MtrunA17_Chr4g0076621 85.359 362 30 8 1 357 1 344 0.0 596
Msa0269280 MtrunA17_Chr4g0031761 81.275 251 20 10 1 237 1 238 4.81e-126 362
Msa0269280 MtrunA17_Chr8g0354941 72.269 238 47 2 131 368 14 232 8.05e-123 353
Msa0269280 MtrunA17_Chr4g0031751 98.077 104 2 0 255 358 1 104 3.69e-73 224
Msa0269280 MtrunA17_Chr8g0354931 52.525 99 36 4 17 107 8 103 6.43e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269280 AT1G28560.3 43.175 359 171 7 23 357 22 371 1.52e-85 267
Msa0269280 AT1G28560.1 47.581 248 112 4 114 357 51 284 1.50e-69 223
Msa0269280 AT1G28560.2 47.581 248 112 4 114 357 62 295 2.10e-69 223

Find 92 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGGAATATATTATAAA+TGG 0.182807 2_3:-41078 Msa0269280:CDS
GAAACAACAACAAGTCTTTC+AGG 0.206736 2_3:-42208 Msa0269280:CDS
AGACATATTGGAAACGTAAA+TGG 0.239480 2_3:+42386 None:intergenic
ATATGTCTGGCCCAATTGTT+AGG 0.268431 2_3:-42371 Msa0269280:CDS
CTTCTGCCGATTGCCGATAA+AGG 0.311277 2_3:+42507 None:intergenic
CGATGAATTGGAATTGGAAT+TGG 0.317249 2_3:-42460 Msa0269280:CDS
AACAATTGGGCCAGACATAT+TGG 0.330843 2_3:+42374 None:intergenic
GGTCAACACAATGGCTCTTC+AGG 0.336128 2_3:-41623 Msa0269280:CDS
ACCCAAGAGCTGTTAGTTCT+TGG 0.341773 2_3:-41372 Msa0269280:CDS
TCAAAGCCATGTCCATTAAC+TGG 0.348465 2_3:+42229 None:intergenic
AATAATGGATGACGATGAAT+TGG 0.349436 2_3:-42472 Msa0269280:exon
TTGGAATTGGAATGTTCAAT+TGG 0.350971 2_3:-42447 Msa0269280:CDS
AATGGGAATATATTATAAAT+GGG 0.355592 2_3:-41077 Msa0269280:CDS
TTTCTTCTGTGCCTCCTCCT+TGG 0.362628 2_3:+41098 None:intergenic
AAGAGAAGAAACAAGAATAA+TGG 0.377711 2_3:-42487 Msa0269280:exon
CTCAAAGGATGATGTCTCTT+AGG 0.383507 2_3:-41756 Msa0269280:CDS
AACTCTGCTGCTGCAGCATT+AGG 0.385029 2_3:+42156 None:intergenic
GCTGGCCAACATGACCCTTC+TGG 0.386308 2_3:-41285 Msa0269280:CDS
AGGAGGAGGCACAGAAGAAA+TGG 0.394153 2_3:-41095 Msa0269280:CDS
TTTACAATTACTATCAAGAA+TGG 0.394641 2_3:+41989 None:intergenic
GGATGACGATGAATTGGAAT+TGG 0.402520 2_3:-42466 Msa0269280:CDS
CACCAAGAACTAACAGCTCT+TGG 0.403372 2_3:+41370 None:intergenic
AAAAGAGGAACCCTAACAAT+TGG 0.405666 2_3:+42360 None:intergenic
GTCAGAATAACAAGCTCTTC+AGG 0.418838 2_3:-42037 Msa0269280:CDS
TCTTAATCATTGAACCGGTT+CGG 0.426362 2_3:-42676 Msa0269280:five_prime_UTR
TGGTAATTGAAAGGGAAGTT+TGG 0.426514 2_3:-40811 None:intergenic
CTGAACTGCTCGCTCAAAAC+CGG 0.432643 2_3:+42622 None:intergenic
TTTCTTCTTAATCATTGAAC+CGG 0.438377 2_3:-42681 Msa0269280:five_prime_UTR
TGATAGTAATTGTAAAGAAA+AGG 0.442398 2_3:-41982 Msa0269280:CDS
TCATGATCATGATTCGAATC+AGG 0.447002 2_3:+42288 None:intergenic
TGGATACCTTTATTGTCATC+AGG 0.448523 2_3:-40935 Msa0269280:CDS
AAACAACAACAAGTCTTTCA+GGG 0.453600 2_3:-42207 Msa0269280:CDS
AATCAGGAGGTAATTCAGAT+TGG 0.455691 2_3:+42304 None:intergenic
ATTTACGTTTCCAATATGTC+TGG 0.458225 2_3:-42384 Msa0269280:CDS
CCAGAACTTATCTGTATTGA+GGG 0.458583 2_3:-41346 Msa0269280:CDS
AAAGTACCTGATGACAATAA+AGG 0.462826 2_3:+40929 None:intergenic
CCCTCAATACAGATAAGTTC+TGG 0.465397 2_3:+41346 None:intergenic
TTGTCTCATGGTAATTGAAA+GGG 0.469068 2_3:-40819 Msa0269280:three_prime_UTR
AACCTTTGTGGCAGAACTTG+TGG 0.482472 2_3:+41732 None:intergenic
GAGCGAGCAGTTCAGGTTCA+CGG 0.484567 2_3:-42614 Msa0269280:five_prime_UTR
TTTCAAAACCACCGAGTCGC+CGG 0.485356 2_3:-42651 Msa0269280:five_prime_UTR
TTTGTCTCATGGTAATTGAA+AGG 0.486849 2_3:-40820 Msa0269280:three_prime_UTR
TTACAATTACTATCAAGAAT+GGG 0.489599 2_3:+41990 None:intergenic
TGCTTATGAAATTTGTCTCA+TGG 0.491703 2_3:-40831 Msa0269280:three_prime_UTR
GACATATTGGAAACGTAAAT+GGG 0.495516 2_3:+42387 None:intergenic
TAAAAGTATTAACCAGGTAG+AGG 0.500922 2_3:-42582 Msa0269280:five_prime_UTR
CAAGAGCTGTTAGTTCTTGG+TGG 0.503983 2_3:-41369 Msa0269280:CDS
AATGGGTTTATTTGTTCGAC+GGG 0.510441 2_3:+42007 None:intergenic
GCCAGAACTTATCTGTATTG+AGG 0.512945 2_3:-41347 Msa0269280:CDS
ACCAAGAACTAACAGCTCTT+GGG 0.513479 2_3:+41371 None:intergenic
AAAGAGGAACCCTAACAATT+GGG 0.516740 2_3:+42361 None:intergenic
CCCCTCGGAATTGAGATTGA+AGG 0.518085 2_3:+42414 None:intergenic
AAGCCAATCGAGTATGGGTC+TGG 0.519776 2_3:+41128 None:intergenic
TATGTCTGGCCCAATTGTTA+GGG 0.523102 2_3:-42370 Msa0269280:CDS
TCAGGAGCACATACCTGTGC+AGG 0.532269 2_3:-41605 Msa0269280:CDS
TGACCAGACCCATACTCGAT+TGG 0.536263 2_3:-41131 Msa0269280:CDS
ACACAAGCAGGAGGAAGATA+AGG 0.539279 2_3:-41937 Msa0269280:CDS
TTGTAAAGAAAAGGTGGAGG+AGG 0.547523 2_3:-41973 Msa0269280:CDS
GAATGGGTTTATTTGTTCGA+CGG 0.551185 2_3:+42006 None:intergenic
GGAGGAGGCACAGAAGAAAT+GGG 0.551959 2_3:-41094 Msa0269280:CDS
GATCAATTGCTCAACGGACC+AGG 0.552708 2_3:-41319 Msa0269280:CDS
ACGTAAATGGGTCCACCCCT+CGG 0.554400 2_3:+42399 None:intergenic
AGAATTTAGGAGAACCTTTG+TGG 0.559405 2_3:+41720 None:intergenic
CAATGATTAAGAAGAAAGAA+AGG 0.562252 2_3:+42687 None:intergenic
TAGTAATTGTAAAGAAAAGG+TGG 0.567221 2_3:-41979 Msa0269280:CDS
CTGGTCAAATCAATAGCAGA+TGG 0.567575 2_3:+41147 None:intergenic
TGTCAGAATCAAACACAAGC+AGG 0.569616 2_3:-41949 Msa0269280:CDS
TCCTTCAATCTCAATTCCGA+GGG 0.576834 2_3:-42415 Msa0269280:CDS
TCAATCTCAATTCCGAGGGG+TGG 0.580163 2_3:-42411 Msa0269280:CDS
CAAAATCAATCAAAACTCAA+AGG 0.581709 2_3:-41771 Msa0269280:CDS
TCAATTAGAAAATAACCAGA+AGG 0.582127 2_3:+41270 None:intergenic
TCTGCTGCTGCAGCATTAGG+AGG 0.582300 2_3:+42159 None:intergenic
GTTTCAACTGTACCTCTACC+TGG 0.584727 2_3:+42570 None:intergenic
ATGGGAATATATTATAAATG+GGG 0.585026 2_3:-41076 Msa0269280:CDS
ATCCTTCAATCTCAATTCCG+AGG 0.585910 2_3:-42416 Msa0269280:CDS
AATAACCAGAAGGGTCATGT+TGG 0.592815 2_3:+41280 None:intergenic
ACAACTTCTGAATCCTGCAC+AGG 0.605667 2_3:+41592 None:intergenic
GCTTCAAAACTCCAAGGAGG+AGG 0.606372 2_3:-41109 Msa0269280:CDS
GTCCACAAGTTCTGCCACAA+AGG 0.606734 2_3:-41734 Msa0269280:intron
TCGAAATAAAACATGACACA+TGG 0.615236 2_3:-42542 Msa0269280:five_prime_UTR
CGATTGGCTTCAAAACTCCA+AGG 0.623497 2_3:-41115 Msa0269280:CDS
TGAGGACCAGTTAATGGACA+TGG 0.631627 2_3:-42235 Msa0269280:CDS
TAATTGTAAAGAAAAGGTGG+AGG 0.637738 2_3:-41976 Msa0269280:CDS
TGTTTCACAGGTCAACACAA+TGG 0.647779 2_3:-41632 Msa0269280:intron
TGATCATGATTCGAATCAGG+AGG 0.661526 2_3:+42291 None:intergenic
ATCTCAAAAGATGCAAAACG+AGG 0.663023 2_3:+41000 None:intergenic
AAAACAAAAGGCAATTGTCG+GGG 0.664942 2_3:-41043 Msa0269280:CDS
CAGAATCAAACACAAGCAGG+AGG 0.676879 2_3:-41946 Msa0269280:CDS
CAATTAGAAAATAACCAGAA+GGG 0.677062 2_3:+41271 None:intergenic
GGACAAGATCAATTGCTCAA+CGG 0.684391 2_3:-41325 Msa0269280:CDS
CCTTCAATCTCAATTCCGAG+GGG 0.754073 2_3:-42414 Msa0269280:CDS
TTGGCTTCAAAACTCCAAGG+AGG 0.756414 2_3:-41112 Msa0269280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATGAAAAAAGA+GGG + chr2_3:41490-41509 None:intergenic 10.0%
!! AATAATAATAATGAAAAAAG+AGG + chr2_3:41491-41510 None:intergenic 10.0%
!!! AATTATTATTTTGATTATGT+AGG + chr2_3:42119-42138 None:intergenic 10.0%
!! AAAGCAAAAAATTAAAAAAA+TGG + chr2_3:42744-42763 None:intergenic 10.0%
!!! TTAATTTTTTGCTTTAAATT+TGG - chr2_3:42749-42768 Msa0269280:five_prime_UTR 10.0%
!! ATAATAATAATGAAAAAAGA+GGG + chr2_3:41490-41509 None:intergenic 10.0%
!! AATAATAATAATGAAAAAAG+AGG + chr2_3:41491-41510 None:intergenic 10.0%
!!! AATTATTATTTTGATTATGT+AGG + chr2_3:42119-42138 None:intergenic 10.0%
!! AAAGCAAAAAATTAAAAAAA+TGG + chr2_3:42744-42763 None:intergenic 10.0%
!!! TTAATTTTTTGCTTTAAATT+TGG - chr2_3:42749-42768 Msa0269280:five_prime_UTR 10.0%
!! AAAAAAAAACAGAATTTAGA+AGG + chr2_3:40898-40917 None:intergenic 15.0%
!!! GATAAAATATTTTCCTTTAT+CGG - chr2_3:41086-41105 Msa0269280:CDS 15.0%
!!! TTCATTTTCAAAATGAATTT+TGG - chr2_3:42142-42161 Msa0269280:intron 15.0%
!!! TTTTCTTTTTCTTTTTCTTT+TGG - chr2_3:42207-42226 Msa0269280:CDS 15.0%
!!! TTTCTTTTTCTTTTTCTTTT+GGG - chr2_3:42208-42227 Msa0269280:CDS 15.0%
!! AAATGGGAATATATTATAAA+TGG - chr2_3:42528-42547 Msa0269280:five_prime_UTR 15.0%
!! AATGGGAATATATTATAAAT+GGG - chr2_3:42529-42548 Msa0269280:five_prime_UTR 15.0%
!! AAAAAAAAACAGAATTTAGA+AGG + chr2_3:40898-40917 None:intergenic 15.0%
!!! GATAAAATATTTTCCTTTAT+CGG - chr2_3:41086-41105 Msa0269280:CDS 15.0%
!!! TTCATTTTCAAAATGAATTT+TGG - chr2_3:42142-42161 Msa0269280:intron 15.0%
!!! TTTTCTTTTTCTTTTTCTTT+TGG - chr2_3:42207-42226 Msa0269280:CDS 15.0%
!!! TTTCTTTTTCTTTTTCTTTT+GGG - chr2_3:42208-42227 Msa0269280:CDS 15.0%
!! AAATGGGAATATATTATAAA+TGG - chr2_3:42528-42547 Msa0269280:five_prime_UTR 15.0%
!! AATGGGAATATATTATAAAT+GGG - chr2_3:42529-42548 Msa0269280:five_prime_UTR 15.0%
!!! TGGTTAATACTTTTAAAACT+CGG + chr2_3:41019-41038 None:intergenic 20.0%
!! ATCATTCATTAATTGATTAC+TGG - chr2_3:41529-41548 Msa0269280:CDS 20.0%
!! TTACAATTACTATCAAGAAT+GGG + chr2_3:41619-41638 None:intergenic 20.0%
!! TTTACAATTACTATCAAGAA+TGG + chr2_3:41620-41639 None:intergenic 20.0%
!! TGATAGTAATTGTAAAGAAA+AGG - chr2_3:41624-41643 Msa0269280:CDS 20.0%
!!! TTTGATTGATTTTGATTTGT+TGG + chr2_3:41829-41848 None:intergenic 20.0%
!!! ATTTACCATAATTTTCGAAA+AGG - chr2_3:42050-42069 Msa0269280:intron 20.0%
!! ATGGGAATATATTATAAATG+GGG - chr2_3:42530-42549 Msa0269280:five_prime_UTR 20.0%
!!! AAGATACATTTTTGTGATTT+AGG - chr2_3:42633-42652 Msa0269280:five_prime_UTR 20.0%
!!! ATTTTTGTGATTTAGGTTTT+CGG - chr2_3:42640-42659 Msa0269280:five_prime_UTR 20.0%
!!! TGGTTAATACTTTTAAAACT+CGG + chr2_3:41019-41038 None:intergenic 20.0%
!! ATCATTCATTAATTGATTAC+TGG - chr2_3:41529-41548 Msa0269280:CDS 20.0%
!! TTACAATTACTATCAAGAAT+GGG + chr2_3:41619-41638 None:intergenic 20.0%
!! TTTACAATTACTATCAAGAA+TGG + chr2_3:41620-41639 None:intergenic 20.0%
!! TGATAGTAATTGTAAAGAAA+AGG - chr2_3:41624-41643 Msa0269280:CDS 20.0%
!!! TTTGATTGATTTTGATTTGT+TGG + chr2_3:41829-41848 None:intergenic 20.0%
!!! ATTTACCATAATTTTCGAAA+AGG - chr2_3:42050-42069 Msa0269280:intron 20.0%
!! ATGGGAATATATTATAAATG+GGG - chr2_3:42530-42549 Msa0269280:five_prime_UTR 20.0%
!!! AAGATACATTTTTGTGATTT+AGG - chr2_3:42633-42652 Msa0269280:five_prime_UTR 20.0%
!!! ATTTTTGTGATTTAGGTTTT+CGG - chr2_3:42640-42659 Msa0269280:five_prime_UTR 20.0%
! AAAAACAGAATTTAGAAGGA+AGG + chr2_3:40894-40913 None:intergenic 25.0%
! CAATGATTAAGAAGAAAGAA+AGG + chr2_3:40922-40941 None:intergenic 25.0%
! TTTCTTCTTAATCATTGAAC+CGG - chr2_3:40925-40944 Msa0269280:CDS 25.0%
!!! GAGTTTTAAAAGTATTAACC+AGG - chr2_3:41018-41037 Msa0269280:CDS 25.0%
!!! GTCATGTTTTATTTCGATAA+CGG + chr2_3:41061-41080 None:intergenic 25.0%
! AAGAGAAGAAACAAGAATAA+TGG - chr2_3:41119-41138 Msa0269280:CDS 25.0%
!! TGATCTTAAAGTTTTTACTG+AGG - chr2_3:41353-41372 Msa0269280:CDS 25.0%
! CATTAATTGATTACTGGATT+TGG - chr2_3:41535-41554 Msa0269280:CDS 25.0%
! TAGTAATTGTAAAGAAAAGG+TGG - chr2_3:41627-41646 Msa0269280:intron 25.0%
! CAAAATCAATCAAAACTCAA+AGG - chr2_3:41835-41854 Msa0269280:intron 25.0%
! GTAATGCATAGTAAGAATTT+AGG + chr2_3:41902-41921 None:intergenic 25.0%
! AATATGAAGATGGAAAAAAG+AGG + chr2_3:41926-41945 None:intergenic 25.0%
! AAAGATAAGGAATATGAAGA+TGG + chr2_3:41936-41955 None:intergenic 25.0%
!!! TTATTTTGATTATGTAGGCA+TGG + chr2_3:42114-42133 None:intergenic 25.0%
! TATCATCAAAGTTAACATGT+AGG - chr2_3:42173-42192 Msa0269280:CDS 25.0%
! AAGAAAAAGAAAAAGAACAG+AGG + chr2_3:42200-42219 None:intergenic 25.0%
! CAATTAGAAAATAACCAGAA+GGG + chr2_3:42338-42357 None:intergenic 25.0%
! TCAATTAGAAAATAACCAGA+AGG + chr2_3:42339-42358 None:intergenic 25.0%
!!! TTCTGGTTATTTTCTAATTG+AGG - chr2_3:42338-42357 Msa0269280:CDS 25.0%
!!! ATGTATTTTACACTGATTTG+AGG - chr2_3:42433-42452 Msa0269280:CDS 25.0%
!!! TGTATTTTACACTGATTTGA+GGG - chr2_3:42434-42453 Msa0269280:CDS 25.0%
!! TACTTTCTTTTATATGTCAC+AGG - chr2_3:42694-42713 Msa0269280:five_prime_UTR 25.0%
! AAAAACAGAATTTAGAAGGA+AGG + chr2_3:40894-40913 None:intergenic 25.0%
! CAATGATTAAGAAGAAAGAA+AGG + chr2_3:40922-40941 None:intergenic 25.0%
! TTTCTTCTTAATCATTGAAC+CGG - chr2_3:40925-40944 Msa0269280:CDS 25.0%
!!! GAGTTTTAAAAGTATTAACC+AGG - chr2_3:41018-41037 Msa0269280:CDS 25.0%
!!! GTCATGTTTTATTTCGATAA+CGG + chr2_3:41061-41080 None:intergenic 25.0%
! AAGAGAAGAAACAAGAATAA+TGG - chr2_3:41119-41138 Msa0269280:CDS 25.0%
!! TGATCTTAAAGTTTTTACTG+AGG - chr2_3:41353-41372 Msa0269280:CDS 25.0%
! CATTAATTGATTACTGGATT+TGG - chr2_3:41535-41554 Msa0269280:CDS 25.0%
! TAGTAATTGTAAAGAAAAGG+TGG - chr2_3:41627-41646 Msa0269280:intron 25.0%
! CAAAATCAATCAAAACTCAA+AGG - chr2_3:41835-41854 Msa0269280:intron 25.0%
! GTAATGCATAGTAAGAATTT+AGG + chr2_3:41902-41921 None:intergenic 25.0%
! AATATGAAGATGGAAAAAAG+AGG + chr2_3:41926-41945 None:intergenic 25.0%
! AAAGATAAGGAATATGAAGA+TGG + chr2_3:41936-41955 None:intergenic 25.0%
!!! TTATTTTGATTATGTAGGCA+TGG + chr2_3:42114-42133 None:intergenic 25.0%
! TATCATCAAAGTTAACATGT+AGG - chr2_3:42173-42192 Msa0269280:CDS 25.0%
! AAGAAAAAGAAAAAGAACAG+AGG + chr2_3:42200-42219 None:intergenic 25.0%
! CAATTAGAAAATAACCAGAA+GGG + chr2_3:42338-42357 None:intergenic 25.0%
! TCAATTAGAAAATAACCAGA+AGG + chr2_3:42339-42358 None:intergenic 25.0%
!!! TTCTGGTTATTTTCTAATTG+AGG - chr2_3:42338-42357 Msa0269280:CDS 25.0%
!!! ATGTATTTTACACTGATTTG+AGG - chr2_3:42433-42452 Msa0269280:CDS 25.0%
!!! TGTATTTTACACTGATTTGA+GGG - chr2_3:42434-42453 Msa0269280:CDS 25.0%
!! TACTTTCTTTTATATGTCAC+AGG - chr2_3:42694-42713 Msa0269280:five_prime_UTR 25.0%
AAGGAAGCAAAAATTTGAAG+TGG + chr2_3:40875-40894 None:intergenic 30.0%
!! TAAAAGTATTAACCAGGTAG+AGG - chr2_3:41024-41043 Msa0269280:CDS 30.0%
TCGAAATAAAACATGACACA+TGG - chr2_3:41064-41083 Msa0269280:CDS 30.0%
! TATTTTCCTTTATCGGCAAT+CGG - chr2_3:41093-41112 Msa0269280:CDS 30.0%
!! AATAATGGATGACGATGAAT+TGG - chr2_3:41134-41153 Msa0269280:CDS 30.0%
TTGGAATTGGAATGTTCAAT+TGG - chr2_3:41159-41178 Msa0269280:CDS 30.0%
GACATATTGGAAACGTAAAT+GGG + chr2_3:41222-41241 None:intergenic 30.0%
AGACATATTGGAAACGTAAA+TGG + chr2_3:41223-41242 None:intergenic 30.0%
ATTTACGTTTCCAATATGTC+TGG - chr2_3:41222-41241 Msa0269280:intron 30.0%
AAACAACAACAAGTCTTTCA+GGG - chr2_3:41399-41418 Msa0269280:intron 30.0%
TAATTGTAAAGAAAAGGTGG+AGG - chr2_3:41630-41649 Msa0269280:intron 30.0%
GAAGAAGAAGAAGAAAGATA+AGG + chr2_3:41949-41968 None:intergenic 30.0%
CTTCTTCTTTAATGTTTCAC+AGG - chr2_3:41962-41981 Msa0269280:CDS 30.0%
! TGACACCTTTTCGAAAATTA+TGG + chr2_3:42058-42077 None:intergenic 30.0%
!!! GAATACCTTTTTTTTGGCAT+TGG + chr2_3:42087-42106 None:intergenic 30.0%
!!! GGCATTGAATACCTTTTTTT+TGG + chr2_3:42093-42112 None:intergenic 30.0%
CAAAAACAAAAGGCAATTGT+CGG - chr2_3:42561-42580 Msa0269280:five_prime_UTR 30.0%
AAAAACAAAAGGCAATTGTC+GGG - chr2_3:42562-42581 Msa0269280:five_prime_UTR 30.0%
! AAAGTACCTGATGACAATAA+AGG + chr2_3:42680-42699 None:intergenic 30.0%
TGCTTATGAAATTTGTCTCA+TGG - chr2_3:42775-42794 Msa0269280:five_prime_UTR 30.0%
TTTGTCTCATGGTAATTGAA+AGG - chr2_3:42786-42805 Msa0269280:five_prime_UTR 30.0%
TTGTCTCATGGTAATTGAAA+GGG - chr2_3:42787-42806 Msa0269280:five_prime_UTR 30.0%
AAGGAAGCAAAAATTTGAAG+TGG + chr2_3:40875-40894 None:intergenic 30.0%
!! TAAAAGTATTAACCAGGTAG+AGG - chr2_3:41024-41043 Msa0269280:CDS 30.0%
TCGAAATAAAACATGACACA+TGG - chr2_3:41064-41083 Msa0269280:CDS 30.0%
! TATTTTCCTTTATCGGCAAT+CGG - chr2_3:41093-41112 Msa0269280:CDS 30.0%
!! AATAATGGATGACGATGAAT+TGG - chr2_3:41134-41153 Msa0269280:CDS 30.0%
TTGGAATTGGAATGTTCAAT+TGG - chr2_3:41159-41178 Msa0269280:CDS 30.0%
GACATATTGGAAACGTAAAT+GGG + chr2_3:41222-41241 None:intergenic 30.0%
AGACATATTGGAAACGTAAA+TGG + chr2_3:41223-41242 None:intergenic 30.0%
ATTTACGTTTCCAATATGTC+TGG - chr2_3:41222-41241 Msa0269280:intron 30.0%
AAACAACAACAAGTCTTTCA+GGG - chr2_3:41399-41418 Msa0269280:intron 30.0%
TAATTGTAAAGAAAAGGTGG+AGG - chr2_3:41630-41649 Msa0269280:intron 30.0%
GAAGAAGAAGAAGAAAGATA+AGG + chr2_3:41949-41968 None:intergenic 30.0%
CTTCTTCTTTAATGTTTCAC+AGG - chr2_3:41962-41981 Msa0269280:CDS 30.0%
! TGACACCTTTTCGAAAATTA+TGG + chr2_3:42058-42077 None:intergenic 30.0%
!!! GAATACCTTTTTTTTGGCAT+TGG + chr2_3:42087-42106 None:intergenic 30.0%
!!! GGCATTGAATACCTTTTTTT+TGG + chr2_3:42093-42112 None:intergenic 30.0%
CAAAAACAAAAGGCAATTGT+CGG - chr2_3:42561-42580 Msa0269280:five_prime_UTR 30.0%
AAAAACAAAAGGCAATTGTC+GGG - chr2_3:42562-42581 Msa0269280:five_prime_UTR 30.0%
! AAAGTACCTGATGACAATAA+AGG + chr2_3:42680-42699 None:intergenic 30.0%
TGCTTATGAAATTTGTCTCA+TGG - chr2_3:42775-42794 Msa0269280:five_prime_UTR 30.0%
TTTGTCTCATGGTAATTGAA+AGG - chr2_3:42786-42805 Msa0269280:five_prime_UTR 30.0%
TTGTCTCATGGTAATTGAAA+GGG - chr2_3:42787-42806 Msa0269280:five_prime_UTR 30.0%
TCTTAATCATTGAACCGGTT+CGG - chr2_3:40930-40949 Msa0269280:CDS 35.0%
CGATGAATTGGAATTGGAAT+TGG - chr2_3:41146-41165 Msa0269280:CDS 35.0%
AAAGAGGAACCCTAACAATT+GGG + chr2_3:41248-41267 None:intergenic 35.0%
AAAAGAGGAACCCTAACAAT+TGG + chr2_3:41249-41268 None:intergenic 35.0%
AGAAGTGAATCCTGAAAAAG+AGG + chr2_3:41264-41283 None:intergenic 35.0%
AATCAGGAGGTAATTCAGAT+TGG + chr2_3:41305-41324 None:intergenic 35.0%
TCATGATCATGATTCGAATC+AGG + chr2_3:41321-41340 None:intergenic 35.0%
! TTTTACTGAGGACCAGTTAA+TGG - chr2_3:41365-41384 Msa0269280:CDS 35.0%
GAAACAACAACAAGTCTTTC+AGG - chr2_3:41398-41417 Msa0269280:intron 35.0%
! AATGGGTTTATTTGTTCGAC+GGG + chr2_3:41602-41621 None:intergenic 35.0%
! GAATGGGTTTATTTGTTCGA+CGG + chr2_3:41603-41622 None:intergenic 35.0%
TAAAGCAAGATAGGTGAATC+AGG + chr2_3:41779-41798 None:intergenic 35.0%
AATCAGGACTAAAGCAAGAT+AGG + chr2_3:41788-41807 None:intergenic 35.0%
AGAATTTAGGAGAACCTTTG+TGG + chr2_3:41889-41908 None:intergenic 35.0%
GCTATCCAATGCCAAAAAAA+AGG - chr2_3:42079-42098 Msa0269280:intron 35.0%
CCAGAACTTATCTGTATTGA+GGG - chr2_3:42260-42279 Msa0269280:CDS 35.0%
ATAGTGATCTCGTTACAAGA+GGG + chr2_3:42378-42397 None:intergenic 35.0%
AATAGTGATCTCGTTACAAG+AGG + chr2_3:42379-42398 None:intergenic 35.0%
AAATACATCCTGCAAGAAAC+TGG + chr2_3:42421-42440 None:intergenic 35.0%
!!! TTTTGAAGCCAATCGAGTAT+GGG + chr2_3:42486-42505 None:intergenic 35.0%
GGAACTACAGCAAAAACAAA+AGG - chr2_3:42551-42570 Msa0269280:five_prime_UTR 35.0%
AAAACAAAAGGCAATTGTCG+GGG - chr2_3:42563-42582 Msa0269280:five_prime_UTR 35.0%
ATCTCAAAAGATGCAAAACG+AGG + chr2_3:42609-42628 None:intergenic 35.0%
TGGATACCTTTATTGTCATC+AGG - chr2_3:42671-42690 Msa0269280:five_prime_UTR 35.0%
TGGTAATTGAAAGGGAAGTT+TGG - chr2_3:42795-42814 Msa0269280:five_prime_UTR 35.0%
TCTTAATCATTGAACCGGTT+CGG - chr2_3:40930-40949 Msa0269280:CDS 35.0%
CGATGAATTGGAATTGGAAT+TGG - chr2_3:41146-41165 Msa0269280:CDS 35.0%
AAAGAGGAACCCTAACAATT+GGG + chr2_3:41248-41267 None:intergenic 35.0%
AAAAGAGGAACCCTAACAAT+TGG + chr2_3:41249-41268 None:intergenic 35.0%
AGAAGTGAATCCTGAAAAAG+AGG + chr2_3:41264-41283 None:intergenic 35.0%
AATCAGGAGGTAATTCAGAT+TGG + chr2_3:41305-41324 None:intergenic 35.0%
TCATGATCATGATTCGAATC+AGG + chr2_3:41321-41340 None:intergenic 35.0%
! TTTTACTGAGGACCAGTTAA+TGG - chr2_3:41365-41384 Msa0269280:CDS 35.0%
GAAACAACAACAAGTCTTTC+AGG - chr2_3:41398-41417 Msa0269280:intron 35.0%
! AATGGGTTTATTTGTTCGAC+GGG + chr2_3:41602-41621 None:intergenic 35.0%
! GAATGGGTTTATTTGTTCGA+CGG + chr2_3:41603-41622 None:intergenic 35.0%
TAAAGCAAGATAGGTGAATC+AGG + chr2_3:41779-41798 None:intergenic 35.0%
AATCAGGACTAAAGCAAGAT+AGG + chr2_3:41788-41807 None:intergenic 35.0%
AGAATTTAGGAGAACCTTTG+TGG + chr2_3:41889-41908 None:intergenic 35.0%
GCTATCCAATGCCAAAAAAA+AGG - chr2_3:42079-42098 Msa0269280:intron 35.0%
CCAGAACTTATCTGTATTGA+GGG - chr2_3:42260-42279 Msa0269280:CDS 35.0%
ATAGTGATCTCGTTACAAGA+GGG + chr2_3:42378-42397 None:intergenic 35.0%
AATAGTGATCTCGTTACAAG+AGG + chr2_3:42379-42398 None:intergenic 35.0%
AAATACATCCTGCAAGAAAC+TGG + chr2_3:42421-42440 None:intergenic 35.0%
!!! TTTTGAAGCCAATCGAGTAT+GGG + chr2_3:42486-42505 None:intergenic 35.0%
GGAACTACAGCAAAAACAAA+AGG - chr2_3:42551-42570 Msa0269280:five_prime_UTR 35.0%
AAAACAAAAGGCAATTGTCG+GGG - chr2_3:42563-42582 Msa0269280:five_prime_UTR 35.0%
ATCTCAAAAGATGCAAAACG+AGG + chr2_3:42609-42628 None:intergenic 35.0%
TGGATACCTTTATTGTCATC+AGG - chr2_3:42671-42690 Msa0269280:five_prime_UTR 35.0%
!!! GTGGTTTTGAAAAACCGAAC+CGG + chr2_3:40947-40966 None:intergenic 40.0%
GGATGACGATGAATTGGAAT+TGG - chr2_3:41140-41159 Msa0269280:CDS 40.0%
ATCCTTCAATCTCAATTCCG+AGG - chr2_3:41190-41209 Msa0269280:intron 40.0%
TCCTTCAATCTCAATTCCGA+GGG - chr2_3:41191-41210 Msa0269280:intron 40.0%
AACAATTGGGCCAGACATAT+TGG + chr2_3:41235-41254 None:intergenic 40.0%
ATATGTCTGGCCCAATTGTT+AGG - chr2_3:41235-41254 Msa0269280:intron 40.0%
TATGTCTGGCCCAATTGTTA+GGG - chr2_3:41236-41255 Msa0269280:intron 40.0%
! TGTTAGGGTTCCTCTTTTTC+AGG - chr2_3:41251-41270 Msa0269280:intron 40.0%
TGATCATGATTCGAATCAGG+AGG + chr2_3:41318-41337 None:intergenic 40.0%
TCAAAGCCATGTCCATTAAC+TGG + chr2_3:41380-41399 None:intergenic 40.0%
GTCAGAATAACAAGCTCTTC+AGG - chr2_3:41569-41588 Msa0269280:CDS 40.0%
TTGTAAAGAAAAGGTGGAGG+AGG - chr2_3:41633-41652 Msa0269280:intron 40.0%
TGTCAGAATCAAACACAAGC+AGG - chr2_3:41657-41676 Msa0269280:intron 40.0%
GATTGATTGATCCTGGAATC+AGG + chr2_3:41804-41823 None:intergenic 40.0%
CTCAAAGGATGATGTCTCTT+AGG - chr2_3:41850-41869 Msa0269280:intron 40.0%
TGTTTCACAGGTCAACACAA+TGG - chr2_3:41974-41993 Msa0269280:CDS 40.0%
ACCAAGAACTAACAGCTCTT+GGG + chr2_3:42238-42257 None:intergenic 40.0%
GCCAGAACTTATCTGTATTG+AGG - chr2_3:42259-42278 Msa0269280:CDS 40.0%
CCCTCAATACAGATAAGTTC+TGG + chr2_3:42263-42282 None:intergenic 40.0%
GGACAAGATCAATTGCTCAA+CGG - chr2_3:42281-42300 Msa0269280:CDS 40.0%
AATAACCAGAAGGGTCATGT+TGG + chr2_3:42329-42348 None:intergenic 40.0%
CTGGTCAAATCAATAGCAGA+TGG + chr2_3:42462-42481 None:intergenic 40.0%
!!! GTTTTGAAGCCAATCGAGTA+TGG + chr2_3:42487-42506 None:intergenic 40.0%
!! TGTGATTTAGGTTTTCGGCT+TGG - chr2_3:42645-42664 Msa0269280:five_prime_UTR 40.0%
!!! GTGGTTTTGAAAAACCGAAC+CGG + chr2_3:40947-40966 None:intergenic 40.0%
GGATGACGATGAATTGGAAT+TGG - chr2_3:41140-41159 Msa0269280:CDS 40.0%
ATCCTTCAATCTCAATTCCG+AGG - chr2_3:41190-41209 Msa0269280:intron 40.0%
TCCTTCAATCTCAATTCCGA+GGG - chr2_3:41191-41210 Msa0269280:intron 40.0%
AACAATTGGGCCAGACATAT+TGG + chr2_3:41235-41254 None:intergenic 40.0%
ATATGTCTGGCCCAATTGTT+AGG - chr2_3:41235-41254 Msa0269280:intron 40.0%
TATGTCTGGCCCAATTGTTA+GGG - chr2_3:41236-41255 Msa0269280:intron 40.0%
! TGTTAGGGTTCCTCTTTTTC+AGG - chr2_3:41251-41270 Msa0269280:intron 40.0%
TGATCATGATTCGAATCAGG+AGG + chr2_3:41318-41337 None:intergenic 40.0%
TCAAAGCCATGTCCATTAAC+TGG + chr2_3:41380-41399 None:intergenic 40.0%
GTCAGAATAACAAGCTCTTC+AGG - chr2_3:41569-41588 Msa0269280:CDS 40.0%
TTGTAAAGAAAAGGTGGAGG+AGG - chr2_3:41633-41652 Msa0269280:intron 40.0%
TGTCAGAATCAAACACAAGC+AGG - chr2_3:41657-41676 Msa0269280:intron 40.0%
GATTGATTGATCCTGGAATC+AGG + chr2_3:41804-41823 None:intergenic 40.0%
CTCAAAGGATGATGTCTCTT+AGG - chr2_3:41850-41869 Msa0269280:intron 40.0%
TGTTTCACAGGTCAACACAA+TGG - chr2_3:41974-41993 Msa0269280:CDS 40.0%
ACCAAGAACTAACAGCTCTT+GGG + chr2_3:42238-42257 None:intergenic 40.0%
GCCAGAACTTATCTGTATTG+AGG - chr2_3:42259-42278 Msa0269280:CDS 40.0%
CCCTCAATACAGATAAGTTC+TGG + chr2_3:42263-42282 None:intergenic 40.0%
GGACAAGATCAATTGCTCAA+CGG - chr2_3:42281-42300 Msa0269280:CDS 40.0%
AATAACCAGAAGGGTCATGT+TGG + chr2_3:42329-42348 None:intergenic 40.0%
CTGGTCAAATCAATAGCAGA+TGG + chr2_3:42462-42481 None:intergenic 40.0%
!!! GTTTTGAAGCCAATCGAGTA+TGG + chr2_3:42487-42506 None:intergenic 40.0%
!! TGTGATTTAGGTTTTCGGCT+TGG - chr2_3:42645-42664 Msa0269280:five_prime_UTR 40.0%
CGCTCAAAACCGGAAAAAAC+CGG + chr2_3:40977-40996 None:intergenic 45.0%
GTTTCAACTGTACCTCTACC+TGG + chr2_3:41039-41058 None:intergenic 45.0%
CCTTCAATCTCAATTCCGAG+GGG - chr2_3:41192-41211 Msa0269280:intron 45.0%
! TGAGGACCAGTTAATGGACA+TGG - chr2_3:41371-41390 Msa0269280:CDS 45.0%
! TTACTGGATTTGGTTGCAGC+AGG - chr2_3:41545-41564 Msa0269280:CDS 45.0%
! TACTGGATTTGGTTGCAGCA+GGG - chr2_3:41546-41565 Msa0269280:CDS 45.0%
CAGAATCAAACACAAGCAGG+AGG - chr2_3:41660-41679 Msa0269280:intron 45.0%
ACACAAGCAGGAGGAAGATA+AGG - chr2_3:41669-41688 Msa0269280:intron 45.0%
AGCAAGATAGGTGAATCAGG+AGG + chr2_3:41776-41795 None:intergenic 45.0%
CTTGCTTTAGTCCTGATTCC+AGG - chr2_3:41790-41809 Msa0269280:CDS 45.0%
GTTGGCAGATTGATTGATCC+TGG + chr2_3:41811-41830 None:intergenic 45.0%
AACCTTTGTGGCAGAACTTG+TGG + chr2_3:41877-41896 None:intergenic 45.0%
ACAACTTCTGAATCCTGCAC+AGG + chr2_3:42017-42036 None:intergenic 45.0%
! ACCCAAGAGCTGTTAGTTCT+TGG - chr2_3:42234-42253 Msa0269280:CDS 45.0%
CACCAAGAACTAACAGCTCT+TGG + chr2_3:42239-42258 None:intergenic 45.0%
! CAAGAGCTGTTAGTTCTTGG+TGG - chr2_3:42237-42256 Msa0269280:CDS 45.0%
GACCAGGTTATGCAAAAAGC+TGG - chr2_3:42303-42322 Msa0269280:CDS 45.0%
!! CGATTGGCTTCAAAACTCCA+AGG - chr2_3:42491-42510 Msa0269280:five_prime_UTR 45.0%
TTGGCTTCAAAACTCCAAGG+AGG - chr2_3:42494-42513 Msa0269280:five_prime_UTR 45.0%
CGCTCAAAACCGGAAAAAAC+CGG + chr2_3:40977-40996 None:intergenic 45.0%
GTTTCAACTGTACCTCTACC+TGG + chr2_3:41039-41058 None:intergenic 45.0%
CCTTCAATCTCAATTCCGAG+GGG - chr2_3:41192-41211 Msa0269280:intron 45.0%
! TGAGGACCAGTTAATGGACA+TGG - chr2_3:41371-41390 Msa0269280:CDS 45.0%
! TTACTGGATTTGGTTGCAGC+AGG - chr2_3:41545-41564 Msa0269280:CDS 45.0%
! TACTGGATTTGGTTGCAGCA+GGG - chr2_3:41546-41565 Msa0269280:CDS 45.0%
CAGAATCAAACACAAGCAGG+AGG - chr2_3:41660-41679 Msa0269280:intron 45.0%
ACACAAGCAGGAGGAAGATA+AGG - chr2_3:41669-41688 Msa0269280:intron 45.0%
AGCAAGATAGGTGAATCAGG+AGG + chr2_3:41776-41795 None:intergenic 45.0%
CTTGCTTTAGTCCTGATTCC+AGG - chr2_3:41790-41809 Msa0269280:CDS 45.0%
GTTGGCAGATTGATTGATCC+TGG + chr2_3:41811-41830 None:intergenic 45.0%
AACCTTTGTGGCAGAACTTG+TGG + chr2_3:41877-41896 None:intergenic 45.0%
ACAACTTCTGAATCCTGCAC+AGG + chr2_3:42017-42036 None:intergenic 45.0%
! ACCCAAGAGCTGTTAGTTCT+TGG - chr2_3:42234-42253 Msa0269280:CDS 45.0%
CACCAAGAACTAACAGCTCT+TGG + chr2_3:42239-42258 None:intergenic 45.0%
! CAAGAGCTGTTAGTTCTTGG+TGG - chr2_3:42237-42256 Msa0269280:CDS 45.0%
GACCAGGTTATGCAAAAAGC+TGG - chr2_3:42303-42322 Msa0269280:CDS 45.0%
!! CGATTGGCTTCAAAACTCCA+AGG - chr2_3:42491-42510 Msa0269280:five_prime_UTR 45.0%
TTGGCTTCAAAACTCCAAGG+AGG - chr2_3:42494-42513 Msa0269280:five_prime_UTR 45.0%
TTTCAAAACCACCGAGTCGC+CGG - chr2_3:40955-40974 Msa0269280:CDS 50.0%
CTGAACTGCTCGCTCAAAAC+CGG + chr2_3:40987-41006 None:intergenic 50.0%
! CTTCTGCCGATTGCCGATAA+AGG + chr2_3:41102-41121 None:intergenic 50.0%
CCCCTCGGAATTGAGATTGA+AGG + chr2_3:41195-41214 None:intergenic 50.0%
TCAATCTCAATTCCGAGGGG+TGG - chr2_3:41195-41214 Msa0269280:intron 50.0%
AACTCTGCTGCTGCAGCATT+AGG + chr2_3:41453-41472 None:intergenic 50.0%
! ACTGGATTTGGTTGCAGCAG+GGG - chr2_3:41547-41566 Msa0269280:CDS 50.0%
GTCCACAAGTTCTGCCACAA+AGG - chr2_3:41872-41891 Msa0269280:intron 50.0%
GGTCAACACAATGGCTCTTC+AGG - chr2_3:41983-42002 Msa0269280:CDS 50.0%
GATCAATTGCTCAACGGACC+AGG - chr2_3:42287-42306 Msa0269280:CDS 50.0%
! GGCCAGCTTTTTGCATAACC+TGG + chr2_3:42308-42327 None:intergenic 50.0%
CTCGTTACAAGAGGGACTAG+AGG + chr2_3:42370-42389 None:intergenic 50.0%
TCTGACGACCAGTTTCTTGC+AGG - chr2_3:42410-42429 Msa0269280:CDS 50.0%
TGACCAGACCCATACTCGAT+TGG - chr2_3:42475-42494 Msa0269280:exon 50.0%
AAGCCAATCGAGTATGGGTC+TGG + chr2_3:42481-42500 None:intergenic 50.0%
GCTTCAAAACTCCAAGGAGG+AGG - chr2_3:42497-42516 Msa0269280:five_prime_UTR 50.0%
TTTCTTCTGTGCCTCCTCCT+TGG + chr2_3:42511-42530 None:intergenic 50.0%
! AGGAGGAGGCACAGAAGAAA+TGG - chr2_3:42511-42530 Msa0269280:five_prime_UTR 50.0%
! GGAGGAGGCACAGAAGAAAT+GGG - chr2_3:42512-42531 Msa0269280:five_prime_UTR 50.0%
!!! TTAGGTTTTCGGCTTGGTGC+TGG - chr2_3:42651-42670 Msa0269280:five_prime_UTR 50.0%
TTTCAAAACCACCGAGTCGC+CGG - chr2_3:40955-40974 Msa0269280:CDS 50.0%
CTGAACTGCTCGCTCAAAAC+CGG + chr2_3:40987-41006 None:intergenic 50.0%
! CTTCTGCCGATTGCCGATAA+AGG + chr2_3:41102-41121 None:intergenic 50.0%
CCCCTCGGAATTGAGATTGA+AGG + chr2_3:41195-41214 None:intergenic 50.0%
TCAATCTCAATTCCGAGGGG+TGG - chr2_3:41195-41214 Msa0269280:intron 50.0%
AACTCTGCTGCTGCAGCATT+AGG + chr2_3:41453-41472 None:intergenic 50.0%
! ACTGGATTTGGTTGCAGCAG+GGG - chr2_3:41547-41566 Msa0269280:CDS 50.0%
GTCCACAAGTTCTGCCACAA+AGG - chr2_3:41872-41891 Msa0269280:intron 50.0%
GGTCAACACAATGGCTCTTC+AGG - chr2_3:41983-42002 Msa0269280:CDS 50.0%
GATCAATTGCTCAACGGACC+AGG - chr2_3:42287-42306 Msa0269280:CDS 50.0%
! GGCCAGCTTTTTGCATAACC+TGG + chr2_3:42308-42327 None:intergenic 50.0%
CTCGTTACAAGAGGGACTAG+AGG + chr2_3:42370-42389 None:intergenic 50.0%
TCTGACGACCAGTTTCTTGC+AGG - chr2_3:42410-42429 Msa0269280:CDS 50.0%
TGACCAGACCCATACTCGAT+TGG - chr2_3:42475-42494 Msa0269280:exon 50.0%
AAGCCAATCGAGTATGGGTC+TGG + chr2_3:42481-42500 None:intergenic 50.0%
GCTTCAAAACTCCAAGGAGG+AGG - chr2_3:42497-42516 Msa0269280:five_prime_UTR 50.0%
TTTCTTCTGTGCCTCCTCCT+TGG + chr2_3:42511-42530 None:intergenic 50.0%
! AGGAGGAGGCACAGAAGAAA+TGG - chr2_3:42511-42530 Msa0269280:five_prime_UTR 50.0%
! GGAGGAGGCACAGAAGAAAT+GGG - chr2_3:42512-42531 Msa0269280:five_prime_UTR 50.0%
!!! TTAGGTTTTCGGCTTGGTGC+TGG - chr2_3:42651-42670 Msa0269280:five_prime_UTR 50.0%
!!! ACCGAGTCGCCGGTTTTTTC+CGG - chr2_3:40965-40984 Msa0269280:CDS 55.0%
ACCGGAAAAAACCGGCGACT+CGG + chr2_3:40969-40988 None:intergenic 55.0%
!!! CGGTTTTGAGCGAGCAGTTC+AGG - chr2_3:40985-41004 Msa0269280:CDS 55.0%
! GAGCGAGCAGTTCAGGTTCA+CGG - chr2_3:40992-41011 Msa0269280:CDS 55.0%
ACGTAAATGGGTCCACCCCT+CGG + chr2_3:41210-41229 None:intergenic 55.0%
TCTGCTGCTGCAGCATTAGG+AGG + chr2_3:41450-41469 None:intergenic 55.0%
! TCAGGAGCACATACCTGTGC+AGG - chr2_3:42001-42020 Msa0269280:CDS 55.0%
!!! ACCGAGTCGCCGGTTTTTTC+CGG - chr2_3:40965-40984 Msa0269280:CDS 55.0%
ACCGGAAAAAACCGGCGACT+CGG + chr2_3:40969-40988 None:intergenic 55.0%
!!! CGGTTTTGAGCGAGCAGTTC+AGG - chr2_3:40985-41004 Msa0269280:CDS 55.0%
! GAGCGAGCAGTTCAGGTTCA+CGG - chr2_3:40992-41011 Msa0269280:CDS 55.0%
ACGTAAATGGGTCCACCCCT+CGG + chr2_3:41210-41229 None:intergenic 55.0%
TCTGCTGCTGCAGCATTAGG+AGG + chr2_3:41450-41469 None:intergenic 55.0%
! TCAGGAGCACATACCTGTGC+AGG - chr2_3:42001-42020 Msa0269280:CDS 55.0%
! GGAAAAAACCGGCGACTCGG+TGG + chr2_3:40966-40985 None:intergenic 60.0%
GCTGGCCAACATGACCCTTC+TGG - chr2_3:42321-42340 Msa0269280:CDS 60.0%
! GGAAAAAACCGGCGACTCGG+TGG + chr2_3:40966-40985 None:intergenic 60.0%
GCTGGCCAACATGACCCTTC+TGG - chr2_3:42321-42340 Msa0269280:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40812 42816 40812 ID=Msa0269280;Name=Msa0269280
chr2_3 mRNA 40812 42816 40812 ID=Msa0269280-mRNA-1;Parent=Msa0269280;Name=Msa0269280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=326|0.6|0.66|1|1|1|6|64|376
chr2_3 exon 40812 41196 40812 ID=Msa0269280-mRNA-1:exon:27;Parent=Msa0269280-mRNA-1
chr2_3 exon 41269 41394 41269 ID=Msa0269280-mRNA-1:exon:26;Parent=Msa0269280-mRNA-1
chr2_3 exon 41528 41644 41528 ID=Msa0269280-mRNA-1:exon:25;Parent=Msa0269280-mRNA-1
chr2_3 exon 41735 41816 41735 ID=Msa0269280-mRNA-1:exon:24;Parent=Msa0269280-mRNA-1
chr2_3 exon 41912 42064 41912 ID=Msa0269280-mRNA-1:exon:23;Parent=Msa0269280-mRNA-1
chr2_3 exon 42159 42816 42159 ID=Msa0269280-mRNA-1:exon:22;Parent=Msa0269280-mRNA-1
chr2_3 five_prime_UTR 42491 42816 42491 ID=Msa0269280-mRNA-1:five_prime_utr;Parent=Msa0269280-mRNA-1
chr2_3 CDS 42159 42490 42159 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 CDS 41912 42064 41912 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 CDS 41735 41816 41735 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 CDS 41528 41644 41528 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 CDS 41269 41394 41269 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 CDS 40876 41196 40876 ID=Msa0269280-mRNA-1:cds;Parent=Msa0269280-mRNA-1
chr2_3 three_prime_UTR 40812 40875 40812 ID=Msa0269280-mRNA-1:three_prime_utr;Parent=Msa0269280-mRNA-1
Gene Sequence

>Msa0269280

ATGGATGACGATGAATTGGAATTGGAATTGGAATGTTCAATTGGAATTGATGATCCTTCAATCTCAATTCCGAGGGGTGGACCCATTTACGTTTCCAATATGTCTGGCCCAATTGTTAGGGTTCCTCTTTTTCAGGATTCACTTCTTTCTCAACTTCACTCTCTCCAATCTGAATTACCTCCTGATTCGAATCATGATCATGATATTAGCGTCGATGATCTTAAAGTTTTTACTGAGGACCAGTTAATGGACATGGCTTTGAAACAACAACAAGTCTTTCAGGGTGAAAGAGACAACAATCAAAATCAACCTCCTAATGCTGCAGCAGCAGACAGGGGTCAGAATAACAAGCTCTTCAGGAGAAAGTCCCGTCGAACAAATAAACCCATTCTTGATAGTAATTGTAAAGAAAAGGTGGAGGAGGTTGTCAGAATCAAACACAAGCAGGAGGAAGATAAGGCACAAGTCACACTTCATTCATTTCAGATCAATCAATCTGCCAACAAATCAAAATCAATCAAAACTCAAAGGATGATGTCTCTTAGGTCCACAAGTTCTGCCACAAAGGTCAACACAATGGCTCTTCAGGAGCACATACCTGTGCAGGATTCAGAAGTTGTTCTCTCTATCGAGATTTACCATAATTTTCGAAAAGGTGTCAAGCTATCCAATGCCAAAAAAAAGACCCAAGAGCTGTTAGTTCTTGGTGGCCAGAACTTATCTGTATTGAGGGACAAGATCAATTGCTCAACGGACCAGGTTATGCAAAAAGCTGGCCAACATGACCCTTCTGGTTATTTTCTAATTGAGGATGTATTTTACACTGATTTGAGGGATCCATCTGCTATTGATTTGACCAGACCCATACTCGATTGGCTTCAAAACTCCAAGGAGGAGGCACAGAAGAAATGGGAATATATTATAAATGGGGAACTACAGCAAAAACAAAAGGCAATTGTCGGGGAAGCATCTGTATCACACTTGCCTCGTTTTGCATCTTTTGAGATGCACAAGATACATTTTTGTGATTTAGGTTTTCGGCTTGGTGCTGGATACCTTTATTGTCATCAGGTACTTTCTTTTATATGTCACAGGTTTATTGTTTTGTTGTTGCATTTTCCATTTTTTTAA

Protein sequence

>Msa0269280

MDDDELELELECSIGIDDPSISIPRGGPIYVSNMSGPIVRVPLFQDSLLSQLHSLQSELPPDSNHDHDISVDDLKVFTEDQLMDMALKQQQVFQGERDNNQNQPPNAAAADRGQNNKLFRRKSRRTNKPILDSNCKEKVEEVVRIKHKQEEDKAQVTLHSFQINQSANKSKSIKTQRMMSLRSTSSATKVNTMALQEHIPVQDSEVVLSIEIYHNFRKGVKLSNAKKKTQELLVLGGQNLSVLRDKINCSTDQVMQKAGQHDPSGYFLIEDVFYTDLRDPSAIDLTRPILDWLQNSKEEAQKKWEYIINGELQQKQKAIVGEASVSHLPRFASFEMHKIHFCDLGFRLGAGYLYCHQVLSFICHRFIVLLLHFPFF*