AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386430 MtrunA17_Chr4g0069441 88.116 345 22 3 1 330 1 341 2.01e-176 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386430 AT1G48300.1 36.813 364 169 14 1 318 1 349 1.95e-34 129

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTGAATTACCTCAATT+AGG 0.183509 tig0020816:-49010 Msa1386430:CDS
TTCTCAAAAGCAAAGTATTA+TGG 0.242646 tig0020816:-47928 Msa1386430:three_prime_UTR
ACAATAACAACCACCGAAAA+AGG 0.244300 tig0020816:-49314 Msa1386430:five_prime_UTR
AATAATGCATCTCTTGTTAC+TGG 0.282326 tig0020816:-48416 Msa1386430:CDS
CTTCTGAATTACCTCAATTA+GGG 0.289665 tig0020816:-49009 Msa1386430:CDS
TTAAAATTCCCAATAAATAA+AGG 0.304201 tig0020816:+47864 None:intergenic
TGTTGATCTTAACATGGTTC+AGG 0.306649 tig0020816:-48189 Msa1386430:CDS
TCGGAGAGTGAGGGTGTCTA+TGG 0.311445 tig0020816:-49152 Msa1386430:CDS
GAATTCTGAATTCTCACATT+AGG 0.340007 tig0020816:+48212 None:intergenic
TACTTCACATCATCATGTTA+TGG 0.361031 tig0020816:-48453 Msa1386430:CDS
AATGAAACAAGAGAAGAAAA+AGG 0.361365 tig0020816:-48642 Msa1386430:CDS
TCCTAATCTACCTAATCTCT+TGG 0.370750 tig0020816:-48975 Msa1386430:CDS
ATATCATTGTTATTTGTCAT+TGG 0.379429 tig0020816:-47981 Msa1386430:three_prime_UTR
CCCAAGAGATTAGGTAGATT+AGG 0.382872 tig0020816:+48974 None:intergenic
CAAGAGTTTGAGAAGGTAGT+AGG 0.384655 tig0020816:-48293 Msa1386430:CDS
CACAAAGCCGGTGGATGAAT+TGG 0.389932 tig0020816:-48519 Msa1386430:CDS
CAATTCATCCACCGGCTTTG+TGG 0.397930 tig0020816:+48520 None:intergenic
GTCATCGTCATGGAGGTTTC+CGG 0.398566 tig0020816:-49244 Msa1386430:exon
TGTTGTTGGATGCAAGTGTA+TGG 0.400360 tig0020816:-48252 Msa1386430:CDS
GAAAGTAAGAGCAGGGGAGA+AGG 0.401972 tig0020816:-48678 Msa1386430:CDS
GAGAAGGTAGTAGGTGTTGA+AGG 0.415252 tig0020816:-48284 Msa1386430:CDS
TGAAGTTGACCCAAGAGATT+AGG 0.430286 tig0020816:+48965 None:intergenic
TGATGTGAAGTAGAATCTTC+AGG 0.436223 tig0020816:+48464 None:intergenic
GTTGATCTTAACATGGTTCA+GGG 0.438643 tig0020816:-48188 Msa1386430:CDS
GTGAGGGTGTCTATGGGGTC+TGG 0.444353 tig0020816:-49145 Msa1386430:CDS
CCAATGCAGAGAGGGTTACT+TGG 0.447490 tig0020816:+48143 None:intergenic
AGGAACAACGCCATGAGAAC+GGG 0.451237 tig0020816:+49174 None:intergenic
CGGAGAGTGAGGGTGTCTAT+GGG 0.456153 tig0020816:-49151 Msa1386430:CDS
TTCAATTCCAATTCATCCAC+CGG 0.460806 tig0020816:+48512 None:intergenic
GAAGGTGAAGGTGTTGTTGT+TGG 0.461516 tig0020816:-48266 Msa1386430:CDS
GTTCTCATGGCGTTGTTCCT+CGG 0.476868 tig0020816:-49171 Msa1386430:CDS
GAGCTAGAGAAAGTAAGAGC+AGG 0.491556 tig0020816:-48686 Msa1386430:CDS
GGGGTCTGGTTTCCATGATG+AGG 0.505395 tig0020816:-49131 Msa1386430:CDS
ACAACCTACATCTCCGGCGT+TGG 0.506506 tig0020816:-49205 Msa1386430:CDS
CCAAGTAACCCTCTCTGCAT+TGG 0.508307 tig0020816:-48143 Msa1386430:CDS
AAAGAGGATTGAAGTTTGCA+TGG 0.512458 tig0020816:-48354 Msa1386430:CDS
GGGTCTGGTTTCCATGATGA+GGG 0.513644 tig0020816:-49130 Msa1386430:CDS
TGGAGTTGGTCTAGAGGATG+TGG 0.516198 tig0020816:-48123 Msa1386430:CDS
CCTAATCTACCTAATCTCTT+GGG 0.516487 tig0020816:-48974 Msa1386430:CDS
GGGACTCACACCCGTTCTCA+TGG 0.519048 tig0020816:-49184 Msa1386430:CDS
AGGGGAGGATTACAAAGATG+TGG 0.525816 tig0020816:-48078 Msa1386430:CDS
TGAAGTAGAATCTTCAGGTA+TGG 0.531707 tig0020816:+48469 None:intergenic
AGTCCCAACGCCGGAGATGT+AGG 0.532391 tig0020816:+49201 None:intergenic
GACTATCACCGTCATCGTCA+TGG 0.541050 tig0020816:-49254 Msa1386430:exon
AACCCTCTCTGCATTGGAGT+TGG 0.545052 tig0020816:-48137 Msa1386430:CDS
CTGCATTGGAGTTGGTCTAG+AGG 0.545072 tig0020816:-48129 Msa1386430:CDS
AGCTAGAGAAAGTAAGAGCA+GGG 0.546581 tig0020816:-48685 Msa1386430:CDS
GTTGTTGGATGCAAGTGTAT+GGG 0.547984 tig0020816:-48251 Msa1386430:CDS
ATAATGCATCTCTTGTTACT+GGG 0.551376 tig0020816:-48415 Msa1386430:CDS
GCGTTGTTCCTCGGAGAGTG+AGG 0.551861 tig0020816:-49162 Msa1386430:CDS
TTATCCCTGCAGCTCAAAAG+AGG 0.567917 tig0020816:-48370 Msa1386430:CDS
ACTGCACGTGACCCTCATCA+TGG 0.571166 tig0020816:+49119 None:intergenic
AAGAGGATTGAAGTTTGCAT+GGG 0.571804 tig0020816:-48353 Msa1386430:CDS
GACCAACTCCAATGCAGAGA+GGG 0.577245 tig0020816:+48135 None:intergenic
TTGTTGGATGCAAGTGTATG+GGG 0.578412 tig0020816:-48250 Msa1386430:CDS
ATCACTTGACTCAGATTCAG+AGG 0.579827 tig0020816:+48559 None:intergenic
GAGGAACAACGCCATGAGAA+CGG 0.580124 tig0020816:+49173 None:intergenic
TGTACGACGGAGAACGGTGC+CGG 0.582122 tig0020816:+49225 None:intergenic
CGTTGTTCCTCGGAGAGTGA+GGG 0.586366 tig0020816:-49161 Msa1386430:CDS
TGTTGAGCAAACCCTAATTG+AGG 0.593503 tig0020816:+48998 None:intergenic
ATGTGGATACCATTGTGGCT+AGG 0.594294 tig0020816:-48106 Msa1386430:CDS
GTAGTAGGTGTTGAAGGTGA+AGG 0.594774 tig0020816:-48278 Msa1386430:CDS
GGATTACAAAGATGTGGGTA+CGG 0.595227 tig0020816:-48072 Msa1386430:CDS
GAATTCTGTTGATCTTAACA+TGG 0.597830 tig0020816:-48195 Msa1386430:CDS
GGGGAGGATTACAAAGATGT+GGG 0.600350 tig0020816:-48077 Msa1386430:CDS
CGTCGTACAACCTACATCTC+CGG 0.602217 tig0020816:-49211 Msa1386430:CDS
GTAGGTTGTACGACGGAGAA+CGG 0.604515 tig0020816:+49219 None:intergenic
TTACATGAATAGATGCAGGA+TGG 0.624402 tig0020816:-48728 Msa1386430:intron
GGAAACCTCCATGACGATGA+CGG 0.624471 tig0020816:+49246 None:intergenic
GCTAGAGAAAGTAAGAGCAG+GGG 0.626526 tig0020816:-48684 Msa1386430:CDS
TCTTCAGGTATGGATAGCAT+AGG 0.636532 tig0020816:+48479 None:intergenic
ATTGTTACAAGAGTTTGAGA+AGG 0.637353 tig0020816:-48300 Msa1386430:CDS
TTGTGATGTTGCCACAAAGC+CGG 0.644781 tig0020816:-48531 Msa1386430:CDS
TGATGTTGCCACAAAGCCGG+TGG 0.654844 tig0020816:-48528 Msa1386430:CDS
GTTTAAGAAAGAGACTAATG+TGG 0.658207 tig0020816:-48393 Msa1386430:CDS
AGAGGATGTGGATACCATTG+TGG 0.664578 tig0020816:-48111 Msa1386430:CDS
ACGGGTGTGAGTCCCAACGC+CGG 0.672451 tig0020816:+49192 None:intergenic
GGAGAGTGAGGGTGTCTATG+GGG 0.673193 tig0020816:-49150 Msa1386430:CDS
ATAGACACCCTCACTCTCCG+AGG 0.695788 tig0020816:+49154 None:intergenic
AGACCAACTCCAATGCAGAG+AGG 0.696753 tig0020816:+48134 None:intergenic
CATGAATAGATGCAGGATGG+TGG 0.702277 tig0020816:-48725 Msa1386430:intron
ATTGTATATATGTGTCAGCG+TGG 0.721744 tig0020816:-48009 Msa1386430:three_prime_UTR
TATCACCGTCATCGTCATGG+AGG 0.734877 tig0020816:-49251 Msa1386430:exon
CGGAGATGTAGGTTGTACGA+CGG 0.747412 tig0020816:+49212 None:intergenic
TCAACTTCACCAAAGCCTCG+CGG 0.751601 tig0020816:-48951 Msa1386430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAAAAGAAAAAG+GGG + tig0020816:48269-48288 None:intergenic 10.0%
!!! TAATACGTTTTTTTTTTTAA+AGG + tig0020816:49287-49306 None:intergenic 10.0%
!! TTAAAAAAAAAAACGTATTA+TGG - tig0020816:49287-49306 Msa1386430:five_prime_UTR 10.0%
!!! ATTTTATTTCCTTTATTTAT+TGG - tig0020816:49310-49329 Msa1386430:five_prime_UTR 10.0%
!!! TTTTATTTCCTTTATTTATT+GGG - tig0020816:49311-49330 Msa1386430:five_prime_UTR 10.0%
!! AATAAAAATAAAAGAAAAAG+GGG + tig0020816:48269-48288 None:intergenic 10.0%
!!! TAATACGTTTTTTTTTTTAA+AGG + tig0020816:49287-49306 None:intergenic 10.0%
!! TTAAAAAAAAAAACGTATTA+TGG - tig0020816:49287-49306 Msa1386430:five_prime_UTR 10.0%
!!! ATTTTATTTCCTTTATTTAT+TGG - tig0020816:49310-49329 Msa1386430:five_prime_UTR 10.0%
!!! TTTTATTTCCTTTATTTATT+GGG - tig0020816:49311-49330 Msa1386430:five_prime_UTR 10.0%
!! TTAAAATTCCCAATAAATAA+AGG + tig0020816:49322-49341 None:intergenic 15.0%
!! TTAAAATTCCCAATAAATAA+AGG + tig0020816:49322-49341 None:intergenic 15.0%
!! GAATTTGTGGTATAAATAAA+GGG + tig0020816:48379-48398 None:intergenic 20.0%
!!! TTTATTACAAGTTTTCATCT+TGG + tig0020816:48582-48601 None:intergenic 20.0%
!!! ATATCATTGTTATTTGTCAT+TGG - tig0020816:49202-49221 Msa1386430:CDS 20.0%
!! AAAAATATAGTCATGTATTG+TGG - tig0020816:49229-49248 Msa1386430:CDS 20.0%
!! GAATTTGTGGTATAAATAAA+GGG + tig0020816:48379-48398 None:intergenic 20.0%
!!! TTTATTACAAGTTTTCATCT+TGG + tig0020816:48582-48601 None:intergenic 20.0%
!!! ATATCATTGTTATTTGTCAT+TGG - tig0020816:49202-49221 Msa1386430:CDS 20.0%
!! AAAAATATAGTCATGTATTG+TGG - tig0020816:49229-49248 Msa1386430:CDS 20.0%
!!! CAAAGTATTGTTTCCTTTTT+CGG + tig0020816:47885-47904 None:intergenic 25.0%
! ATCTTTAATTCAGAATCTGA+AGG + tig0020816:48322-48341 None:intergenic 25.0%
! GGAATTTGTGGTATAAATAA+AGG + tig0020816:48380-48399 None:intergenic 25.0%
! ATCATCATAATTGGAATTTG+TGG + tig0020816:48392-48411 None:intergenic 25.0%
! ATCATCATCATCATCATAAT+TGG + tig0020816:48401-48420 None:intergenic 25.0%
!!! TTTTTTACATGAATAGATGC+AGG - tig0020816:48451-48470 Msa1386430:CDS 25.0%
! AATGAAACAAGAGAAGAAAA+AGG - tig0020816:48541-48560 Msa1386430:CDS 25.0%
! GTAACAAATGCAAAAAATCA+GGG - tig0020816:48852-48871 Msa1386430:intron 25.0%
! TAACAAATGCAAAAAATCAG+GGG - tig0020816:48853-48872 Msa1386430:intron 25.0%
!! TTCTCAAAAGCAAAGTATTA+TGG - tig0020816:49255-49274 Msa1386430:exon 25.0%
!! TTGTGTTGTGTTATCTTTTT+GGG + tig0020816:47841-47860 None:intergenic 25.0%
!!! CAAAGTATTGTTTCCTTTTT+CGG + tig0020816:47885-47904 None:intergenic 25.0%
! ATCTTTAATTCAGAATCTGA+AGG + tig0020816:48322-48341 None:intergenic 25.0%
! GGAATTTGTGGTATAAATAA+AGG + tig0020816:48380-48399 None:intergenic 25.0%
! ATCATCATAATTGGAATTTG+TGG + tig0020816:48392-48411 None:intergenic 25.0%
! ATCATCATCATCATCATAAT+TGG + tig0020816:48401-48420 None:intergenic 25.0%
!!! TTTTTTACATGAATAGATGC+AGG - tig0020816:48451-48470 Msa1386430:CDS 25.0%
! AATGAAACAAGAGAAGAAAA+AGG - tig0020816:48541-48560 Msa1386430:CDS 25.0%
! GTAACAAATGCAAAAAATCA+GGG - tig0020816:48852-48871 Msa1386430:intron 25.0%
! TAACAAATGCAAAAAATCAG+GGG - tig0020816:48853-48872 Msa1386430:intron 25.0%
!! TTCTCAAAAGCAAAGTATTA+TGG - tig0020816:49255-49274 Msa1386430:exon 25.0%
CTTCTGAATTACCTCAATTA+GGG - tig0020816:48174-48193 Msa1386430:CDS 30.0%
!!! TTTTTTCCTGTTTCTTGTTG+TGG - tig0020816:48347-48366 Msa1386430:CDS 30.0%
!! TTTTTCCTGTTTCTTGTTGT+GGG - tig0020816:48348-48367 Msa1386430:CDS 30.0%
! TTACAAGTTTTCATCTTGGA+GGG + tig0020816:48578-48597 None:intergenic 30.0%
! ATTACAAGTTTTCATCTTGG+AGG + tig0020816:48579-48598 None:intergenic 30.0%
TACTTCACATCATCATGTTA+TGG - tig0020816:48730-48749 Msa1386430:intron 30.0%
AATAATGCATCTCTTGTTAC+TGG - tig0020816:48767-48786 Msa1386430:intron 30.0%
ATAATGCATCTCTTGTTACT+GGG - tig0020816:48768-48787 Msa1386430:intron 30.0%
GTTTAAGAAAGAGACTAATG+TGG - tig0020816:48790-48809 Msa1386430:intron 30.0%
GGTAACAAATGCAAAAAATC+AGG - tig0020816:48851-48870 Msa1386430:intron 30.0%
ATTGTTACAAGAGTTTGAGA+AGG - tig0020816:48883-48902 Msa1386430:intron 30.0%
GAATTCTGAATTCTCACATT+AGG + tig0020816:48974-48993 None:intergenic 30.0%
GAATTCTGTTGATCTTAACA+TGG - tig0020816:48988-49007 Msa1386430:CDS 30.0%
! GTTGTGTTGTGTTATCTTTT+TGG + tig0020816:47842-47861 None:intergenic 30.0%
CTTCTGAATTACCTCAATTA+GGG - tig0020816:48174-48193 Msa1386430:CDS 30.0%
!!! TTTTTTCCTGTTTCTTGTTG+TGG - tig0020816:48347-48366 Msa1386430:CDS 30.0%
!! TTTTTCCTGTTTCTTGTTGT+GGG - tig0020816:48348-48367 Msa1386430:CDS 30.0%
! TTACAAGTTTTCATCTTGGA+GGG + tig0020816:48578-48597 None:intergenic 30.0%
! ATTACAAGTTTTCATCTTGG+AGG + tig0020816:48579-48598 None:intergenic 30.0%
TACTTCACATCATCATGTTA+TGG - tig0020816:48730-48749 Msa1386430:intron 30.0%
AATAATGCATCTCTTGTTAC+TGG - tig0020816:48767-48786 Msa1386430:intron 30.0%
ATAATGCATCTCTTGTTACT+GGG - tig0020816:48768-48787 Msa1386430:intron 30.0%
GTTTAAGAAAGAGACTAATG+TGG - tig0020816:48790-48809 Msa1386430:intron 30.0%
GGTAACAAATGCAAAAAATC+AGG - tig0020816:48851-48870 Msa1386430:intron 30.0%
ATTGTTACAAGAGTTTGAGA+AGG - tig0020816:48883-48902 Msa1386430:intron 30.0%
GAATTCTGAATTCTCACATT+AGG + tig0020816:48974-48993 None:intergenic 30.0%
GAATTCTGTTGATCTTAACA+TGG - tig0020816:48988-49007 Msa1386430:CDS 30.0%
ACAATAACAACCACCGAAAA+AGG - tig0020816:47869-47888 Msa1386430:three_prime_UTR 35.0%
!!! AGTATTGTTTCCTTTTTCGG+TGG + tig0020816:47882-47901 None:intergenic 35.0%
!!! CTGTTTTTTTCTTCACGTCT+TGG + tig0020816:48094-48113 None:intergenic 35.0%
GCTTCTGAATTACCTCAATT+AGG - tig0020816:48173-48192 Msa1386430:CDS 35.0%
TCCTAATCTACCTAATCTCT+TGG - tig0020816:48208-48227 Msa1386430:CDS 35.0%
CCTAATCTACCTAATCTCTT+GGG - tig0020816:48209-48228 Msa1386430:CDS 35.0%
!! TTTTCCTGTTTCTTGTTGTG+GGG - tig0020816:48349-48368 Msa1386430:CDS 35.0%
TTACATGAATAGATGCAGGA+TGG - tig0020816:48455-48474 Msa1386430:CDS 35.0%
TTCAATTCCAATTCATCCAC+CGG + tig0020816:48674-48693 None:intergenic 35.0%
TGAAGTAGAATCTTCAGGTA+TGG + tig0020816:48717-48736 None:intergenic 35.0%
TGATGTGAAGTAGAATCTTC+AGG + tig0020816:48722-48741 None:intergenic 35.0%
AAAGAGGATTGAAGTTTGCA+TGG - tig0020816:48829-48848 Msa1386430:intron 35.0%
AAGAGGATTGAAGTTTGCAT+GGG - tig0020816:48830-48849 Msa1386430:intron 35.0%
TGTTGATCTTAACATGGTTC+AGG - tig0020816:48994-49013 Msa1386430:CDS 35.0%
GTTGATCTTAACATGGTTCA+GGG - tig0020816:48995-49014 Msa1386430:CDS 35.0%
ATTGTATATATGTGTCAGCG+TGG - tig0020816:49174-49193 Msa1386430:CDS 35.0%
ACAATAACAACCACCGAAAA+AGG - tig0020816:47869-47888 Msa1386430:three_prime_UTR 35.0%
!!! AGTATTGTTTCCTTTTTCGG+TGG + tig0020816:47882-47901 None:intergenic 35.0%
!!! CTGTTTTTTTCTTCACGTCT+TGG + tig0020816:48094-48113 None:intergenic 35.0%
GCTTCTGAATTACCTCAATT+AGG - tig0020816:48173-48192 Msa1386430:CDS 35.0%
TCCTAATCTACCTAATCTCT+TGG - tig0020816:48208-48227 Msa1386430:CDS 35.0%
CCTAATCTACCTAATCTCTT+GGG - tig0020816:48209-48228 Msa1386430:CDS 35.0%
!! TTTTCCTGTTTCTTGTTGTG+GGG - tig0020816:48349-48368 Msa1386430:CDS 35.0%
TTACATGAATAGATGCAGGA+TGG - tig0020816:48455-48474 Msa1386430:CDS 35.0%
TTCAATTCCAATTCATCCAC+CGG + tig0020816:48674-48693 None:intergenic 35.0%
TGAAGTAGAATCTTCAGGTA+TGG + tig0020816:48717-48736 None:intergenic 35.0%
TGATGTGAAGTAGAATCTTC+AGG + tig0020816:48722-48741 None:intergenic 35.0%
AAAGAGGATTGAAGTTTGCA+TGG - tig0020816:48829-48848 Msa1386430:intron 35.0%
AAGAGGATTGAAGTTTGCAT+GGG - tig0020816:48830-48849 Msa1386430:intron 35.0%
TGTTGATCTTAACATGGTTC+AGG - tig0020816:48994-49013 Msa1386430:CDS 35.0%
GTTGATCTTAACATGGTTCA+GGG - tig0020816:48995-49014 Msa1386430:CDS 35.0%
ATTGTATATATGTGTCAGCG+TGG - tig0020816:49174-49193 Msa1386430:CDS 35.0%
TGTTGAGCAAACCCTAATTG+AGG + tig0020816:48188-48207 None:intergenic 40.0%
CCCAAGAGATTAGGTAGATT+AGG + tig0020816:48212-48231 None:intergenic 40.0%
TGAAGTTGACCCAAGAGATT+AGG + tig0020816:48221-48240 None:intergenic 40.0%
AAAACCCCACAACAAGAAAC+AGG + tig0020816:48356-48375 None:intergenic 40.0%
AGCTAGAGAAAGTAAGAGCA+GGG - tig0020816:48498-48517 Msa1386430:CDS 40.0%
ATCACTTGACTCAGATTCAG+AGG + tig0020816:48627-48646 None:intergenic 40.0%
TCTTCAGGTATGGATAGCAT+AGG + tig0020816:48707-48726 None:intergenic 40.0%
CAAGAGTTTGAGAAGGTAGT+AGG - tig0020816:48890-48909 Msa1386430:intron 40.0%
TGTTGTTGGATGCAAGTGTA+TGG - tig0020816:48931-48950 Msa1386430:intron 40.0%
GTTGTTGGATGCAAGTGTAT+GGG - tig0020816:48932-48951 Msa1386430:intron 40.0%
TTGTTGGATGCAAGTGTATG+GGG - tig0020816:48933-48952 Msa1386430:intron 40.0%
! ACCATTGTGGCTAGGTTTTT+AGG - tig0020816:49085-49104 Msa1386430:CDS 40.0%
! CCATTGTGGCTAGGTTTTTA+GGG - tig0020816:49086-49105 Msa1386430:CDS 40.0%
!! CATTGTGGCTAGGTTTTTAG+GGG - tig0020816:49087-49106 Msa1386430:CDS 40.0%
GGATTACAAAGATGTGGGTA+CGG - tig0020816:49111-49130 Msa1386430:CDS 40.0%
TGTTGAGCAAACCCTAATTG+AGG + tig0020816:48188-48207 None:intergenic 40.0%
CCCAAGAGATTAGGTAGATT+AGG + tig0020816:48212-48231 None:intergenic 40.0%
TGAAGTTGACCCAAGAGATT+AGG + tig0020816:48221-48240 None:intergenic 40.0%
AAAACCCCACAACAAGAAAC+AGG + tig0020816:48356-48375 None:intergenic 40.0%
AGCTAGAGAAAGTAAGAGCA+GGG - tig0020816:48498-48517 Msa1386430:CDS 40.0%
ATCACTTGACTCAGATTCAG+AGG + tig0020816:48627-48646 None:intergenic 40.0%
TCTTCAGGTATGGATAGCAT+AGG + tig0020816:48707-48726 None:intergenic 40.0%
CAAGAGTTTGAGAAGGTAGT+AGG - tig0020816:48890-48909 Msa1386430:intron 40.0%
TGTTGTTGGATGCAAGTGTA+TGG - tig0020816:48931-48950 Msa1386430:intron 40.0%
GTTGTTGGATGCAAGTGTAT+GGG - tig0020816:48932-48951 Msa1386430:intron 40.0%
TTGTTGGATGCAAGTGTATG+GGG - tig0020816:48933-48952 Msa1386430:intron 40.0%
! ACCATTGTGGCTAGGTTTTT+AGG - tig0020816:49085-49104 Msa1386430:CDS 40.0%
! CCATTGTGGCTAGGTTTTTA+GGG - tig0020816:49086-49105 Msa1386430:CDS 40.0%
!! CATTGTGGCTAGGTTTTTAG+GGG - tig0020816:49087-49106 Msa1386430:CDS 40.0%
GGATTACAAAGATGTGGGTA+CGG - tig0020816:49111-49130 Msa1386430:CDS 40.0%
!! AAAAAAGTACCGCGAGGCTT+TGG + tig0020816:48244-48263 None:intergenic 45.0%
CATGAATAGATGCAGGATGG+TGG - tig0020816:48458-48477 Msa1386430:CDS 45.0%
GAGCTAGAGAAAGTAAGAGC+AGG - tig0020816:48497-48516 Msa1386430:CDS 45.0%
GCTAGAGAAAGTAAGAGCAG+GGG - tig0020816:48499-48518 Msa1386430:CDS 45.0%
TTGTGATGTTGCCACAAAGC+CGG - tig0020816:48652-48671 Msa1386430:CDS 45.0%
TTATCCCTGCAGCTCAAAAG+AGG - tig0020816:48813-48832 Msa1386430:intron 45.0%
! CAATCCTCTTTTGAGCTGCA+GGG + tig0020816:48820-48839 None:intergenic 45.0%
! TCAATCCTCTTTTGAGCTGC+AGG + tig0020816:48821-48840 None:intergenic 45.0%
!! GAGAAGGTAGTAGGTGTTGA+AGG - tig0020816:48899-48918 Msa1386430:intron 45.0%
!! GTAGTAGGTGTTGAAGGTGA+AGG - tig0020816:48905-48924 Msa1386430:intron 45.0%
!! GAAGGTGAAGGTGTTGTTGT+TGG - tig0020816:48917-48936 Msa1386430:intron 45.0%
AGAGGATGTGGATACCATTG+TGG - tig0020816:49072-49091 Msa1386430:CDS 45.0%
ATGTGGATACCATTGTGGCT+AGG - tig0020816:49077-49096 Msa1386430:CDS 45.0%
CCCTAAAAACCTAGCCACAA+TGG + tig0020816:49089-49108 None:intergenic 45.0%
AGGGGAGGATTACAAAGATG+TGG - tig0020816:49105-49124 Msa1386430:CDS 45.0%
GGGGAGGATTACAAAGATGT+GGG - tig0020816:49106-49125 Msa1386430:CDS 45.0%
!! AAAAAAGTACCGCGAGGCTT+TGG + tig0020816:48244-48263 None:intergenic 45.0%
CATGAATAGATGCAGGATGG+TGG - tig0020816:48458-48477 Msa1386430:CDS 45.0%
GAGCTAGAGAAAGTAAGAGC+AGG - tig0020816:48497-48516 Msa1386430:CDS 45.0%
GCTAGAGAAAGTAAGAGCAG+GGG - tig0020816:48499-48518 Msa1386430:CDS 45.0%
TTGTGATGTTGCCACAAAGC+CGG - tig0020816:48652-48671 Msa1386430:CDS 45.0%
TTATCCCTGCAGCTCAAAAG+AGG - tig0020816:48813-48832 Msa1386430:intron 45.0%
! CAATCCTCTTTTGAGCTGCA+GGG + tig0020816:48820-48839 None:intergenic 45.0%
! TCAATCCTCTTTTGAGCTGC+AGG + tig0020816:48821-48840 None:intergenic 45.0%
!! GAGAAGGTAGTAGGTGTTGA+AGG - tig0020816:48899-48918 Msa1386430:intron 45.0%
!! GTAGTAGGTGTTGAAGGTGA+AGG - tig0020816:48905-48924 Msa1386430:intron 45.0%
!! GAAGGTGAAGGTGTTGTTGT+TGG - tig0020816:48917-48936 Msa1386430:intron 45.0%
AGAGGATGTGGATACCATTG+TGG - tig0020816:49072-49091 Msa1386430:CDS 45.0%
ATGTGGATACCATTGTGGCT+AGG - tig0020816:49077-49096 Msa1386430:CDS 45.0%
CCCTAAAAACCTAGCCACAA+TGG + tig0020816:49089-49108 None:intergenic 45.0%
AGGGGAGGATTACAAAGATG+TGG - tig0020816:49105-49124 Msa1386430:CDS 45.0%
GGGGAGGATTACAAAGATGT+GGG - tig0020816:49106-49125 Msa1386430:CDS 45.0%
!! TAATAAAAATAAAAGAAAAA+GGG + tig0020816:48270-48289 None:intergenic 5.0%
!! ATAATAAAAATAAAAGAAAA+AGG + tig0020816:48271-48290 None:intergenic 5.0%
!! TAATAAAAATAAAAGAAAAA+GGG + tig0020816:48270-48289 None:intergenic 5.0%
!! ATAATAAAAATAAAAGAAAA+AGG + tig0020816:48271-48290 None:intergenic 5.0%
GACTATCACCGTCATCGTCA+TGG - tig0020816:47929-47948 Msa1386430:three_prime_UTR 50.0%
TATCACCGTCATCGTCATGG+AGG - tig0020816:47932-47951 Msa1386430:three_prime_UTR 50.0%
GGAAACCTCCATGACGATGA+CGG + tig0020816:47940-47959 None:intergenic 50.0%
GTCATCGTCATGGAGGTTTC+CGG - tig0020816:47939-47958 Msa1386430:three_prime_UTR 50.0%
GTAGGTTGTACGACGGAGAA+CGG + tig0020816:47967-47986 None:intergenic 50.0%
CGGAGATGTAGGTTGTACGA+CGG + tig0020816:47974-47993 None:intergenic 50.0%
CGTCGTACAACCTACATCTC+CGG - tig0020816:47972-47991 Msa1386430:three_prime_UTR 50.0%
AGGAACAACGCCATGAGAAC+GGG + tig0020816:48012-48031 None:intergenic 50.0%
GAGGAACAACGCCATGAGAA+CGG + tig0020816:48013-48032 None:intergenic 50.0%
GTTCTCATGGCGTTGTTCCT+CGG - tig0020816:48012-48031 Msa1386430:three_prime_UTR 50.0%
! GGGTCTGGTTTCCATGATGA+GGG - tig0020816:48053-48072 Msa1386430:CDS 50.0%
TCAACTTCACCAAAGCCTCG+CGG - tig0020816:48232-48251 Msa1386430:CDS 50.0%
GAAAGTAAGAGCAGGGGAGA+AGG - tig0020816:48505-48524 Msa1386430:CDS 50.0%
!! CAATTCATCCACCGGCTTTG+TGG + tig0020816:48666-48685 None:intergenic 50.0%
CACAAAGCCGGTGGATGAAT+TGG - tig0020816:48664-48683 Msa1386430:CDS 50.0%
CCAATGCAGAGAGGGTTACT+TGG + tig0020816:49043-49062 None:intergenic 50.0%
CCAAGTAACCCTCTCTGCAT+TGG - tig0020816:49040-49059 Msa1386430:CDS 50.0%
AACCCTCTCTGCATTGGAGT+TGG - tig0020816:49046-49065 Msa1386430:CDS 50.0%
GACCAACTCCAATGCAGAGA+GGG + tig0020816:49051-49070 None:intergenic 50.0%
AGACCAACTCCAATGCAGAG+AGG + tig0020816:49052-49071 None:intergenic 50.0%
! CTGCATTGGAGTTGGTCTAG+AGG - tig0020816:49054-49073 Msa1386430:CDS 50.0%
! TGGAGTTGGTCTAGAGGATG+TGG - tig0020816:49060-49079 Msa1386430:CDS 50.0%
!! TGTGGCTAGGTTTTTAGGGG+AGG - tig0020816:49090-49109 Msa1386430:CDS 50.0%
GACTATCACCGTCATCGTCA+TGG - tig0020816:47929-47948 Msa1386430:three_prime_UTR 50.0%
TATCACCGTCATCGTCATGG+AGG - tig0020816:47932-47951 Msa1386430:three_prime_UTR 50.0%
GGAAACCTCCATGACGATGA+CGG + tig0020816:47940-47959 None:intergenic 50.0%
GTCATCGTCATGGAGGTTTC+CGG - tig0020816:47939-47958 Msa1386430:three_prime_UTR 50.0%
GTAGGTTGTACGACGGAGAA+CGG + tig0020816:47967-47986 None:intergenic 50.0%
CGGAGATGTAGGTTGTACGA+CGG + tig0020816:47974-47993 None:intergenic 50.0%
CGTCGTACAACCTACATCTC+CGG - tig0020816:47972-47991 Msa1386430:three_prime_UTR 50.0%
AGGAACAACGCCATGAGAAC+GGG + tig0020816:48012-48031 None:intergenic 50.0%
GAGGAACAACGCCATGAGAA+CGG + tig0020816:48013-48032 None:intergenic 50.0%
GTTCTCATGGCGTTGTTCCT+CGG - tig0020816:48012-48031 Msa1386430:three_prime_UTR 50.0%
! GGGTCTGGTTTCCATGATGA+GGG - tig0020816:48053-48072 Msa1386430:CDS 50.0%
TCAACTTCACCAAAGCCTCG+CGG - tig0020816:48232-48251 Msa1386430:CDS 50.0%
GAAAGTAAGAGCAGGGGAGA+AGG - tig0020816:48505-48524 Msa1386430:CDS 50.0%
!! CAATTCATCCACCGGCTTTG+TGG + tig0020816:48666-48685 None:intergenic 50.0%
CACAAAGCCGGTGGATGAAT+TGG - tig0020816:48664-48683 Msa1386430:CDS 50.0%
CCAATGCAGAGAGGGTTACT+TGG + tig0020816:49043-49062 None:intergenic 50.0%
CCAAGTAACCCTCTCTGCAT+TGG - tig0020816:49040-49059 Msa1386430:CDS 50.0%
AACCCTCTCTGCATTGGAGT+TGG - tig0020816:49046-49065 Msa1386430:CDS 50.0%
GACCAACTCCAATGCAGAGA+GGG + tig0020816:49051-49070 None:intergenic 50.0%
AGACCAACTCCAATGCAGAG+AGG + tig0020816:49052-49071 None:intergenic 50.0%
! CTGCATTGGAGTTGGTCTAG+AGG - tig0020816:49054-49073 Msa1386430:CDS 50.0%
! TGGAGTTGGTCTAGAGGATG+TGG - tig0020816:49060-49079 Msa1386430:CDS 50.0%
!! TGTGGCTAGGTTTTTAGGGG+AGG - tig0020816:49090-49109 Msa1386430:CDS 50.0%
ACAACCTACATCTCCGGCGT+TGG - tig0020816:47978-47997 Msa1386430:three_prime_UTR 55.0%
CAACCTACATCTCCGGCGTT+GGG - tig0020816:47979-47998 Msa1386430:three_prime_UTR 55.0%
CGTTGTTCCTCGGAGAGTGA+GGG - tig0020816:48022-48041 Msa1386430:three_prime_UTR 55.0%
ATAGACACCCTCACTCTCCG+AGG + tig0020816:48032-48051 None:intergenic 55.0%
!! TCGGAGAGTGAGGGTGTCTA+TGG - tig0020816:48031-48050 Msa1386430:three_prime_UTR 55.0%
!! CGGAGAGTGAGGGTGTCTAT+GGG - tig0020816:48032-48051 Msa1386430:three_prime_UTR 55.0%
!! GGAGAGTGAGGGTGTCTATG+GGG - tig0020816:48033-48052 Msa1386430:exon 55.0%
! GGGGTCTGGTTTCCATGATG+AGG - tig0020816:48052-48071 Msa1386430:CDS 55.0%
ACTGCACGTGACCCTCATCA+TGG + tig0020816:48067-48086 None:intergenic 55.0%
!! GGGGTGAAAAAAGTACCGCG+AGG + tig0020816:48250-48269 None:intergenic 55.0%
TGATGTTGCCACAAAGCCGG+TGG - tig0020816:48655-48674 Msa1386430:CDS 55.0%
ACAACCTACATCTCCGGCGT+TGG - tig0020816:47978-47997 Msa1386430:three_prime_UTR 55.0%
CAACCTACATCTCCGGCGTT+GGG - tig0020816:47979-47998 Msa1386430:three_prime_UTR 55.0%
CGTTGTTCCTCGGAGAGTGA+GGG - tig0020816:48022-48041 Msa1386430:three_prime_UTR 55.0%
ATAGACACCCTCACTCTCCG+AGG + tig0020816:48032-48051 None:intergenic 55.0%
!! TCGGAGAGTGAGGGTGTCTA+TGG - tig0020816:48031-48050 Msa1386430:three_prime_UTR 55.0%
!! CGGAGAGTGAGGGTGTCTAT+GGG - tig0020816:48032-48051 Msa1386430:three_prime_UTR 55.0%
!! GGAGAGTGAGGGTGTCTATG+GGG - tig0020816:48033-48052 Msa1386430:exon 55.0%
! GGGGTCTGGTTTCCATGATG+AGG - tig0020816:48052-48071 Msa1386430:CDS 55.0%
ACTGCACGTGACCCTCATCA+TGG + tig0020816:48067-48086 None:intergenic 55.0%
!! GGGGTGAAAAAAGTACCGCG+AGG + tig0020816:48250-48269 None:intergenic 55.0%
TGATGTTGCCACAAAGCCGG+TGG - tig0020816:48655-48674 Msa1386430:CDS 55.0%
TGTACGACGGAGAACGGTGC+CGG + tig0020816:47961-47980 None:intergenic 60.0%
AGTCCCAACGCCGGAGATGT+AGG + tig0020816:47985-48004 None:intergenic 60.0%
GGGACTCACACCCGTTCTCA+TGG - tig0020816:47999-48018 Msa1386430:three_prime_UTR 60.0%
GCGTTGTTCCTCGGAGAGTG+AGG - tig0020816:48021-48040 Msa1386430:three_prime_UTR 60.0%
!! GTGAGGGTGTCTATGGGGTC+TGG - tig0020816:48038-48057 Msa1386430:exon 60.0%
TGTACGACGGAGAACGGTGC+CGG + tig0020816:47961-47980 None:intergenic 60.0%
AGTCCCAACGCCGGAGATGT+AGG + tig0020816:47985-48004 None:intergenic 60.0%
GGGACTCACACCCGTTCTCA+TGG - tig0020816:47999-48018 Msa1386430:three_prime_UTR 60.0%
GCGTTGTTCCTCGGAGAGTG+AGG - tig0020816:48021-48040 Msa1386430:three_prime_UTR 60.0%
!! GTGAGGGTGTCTATGGGGTC+TGG - tig0020816:48038-48057 Msa1386430:exon 60.0%
ACGGGTGTGAGTCCCAACGC+CGG + tig0020816:47994-48013 None:intergenic 65.0%
ACGGGTGTGAGTCCCAACGC+CGG + tig0020816:47994-48013 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020816 gene 47840 49365 47840 ID=Msa1386430;Name=Msa1386430
tig0020816 mRNA 47840 49365 47840 ID=Msa1386430-mRNA-1;Parent=Msa1386430;Name=Msa1386430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|2|212|330
tig0020816 exon 47840 48738 47840 ID=Msa1386430-mRNA-1:exon:10152;Parent=Msa1386430-mRNA-1
tig0020816 exon 48952 49365 48952 ID=Msa1386430-mRNA-1:exon:10151;Parent=Msa1386430-mRNA-1
tig0020816 five_prime_UTR 49258 49365 49258 ID=Msa1386430-mRNA-1:five_prime_utr;Parent=Msa1386430-mRNA-1
tig0020816 CDS 48952 49257 48952 ID=Msa1386430-mRNA-1:cds;Parent=Msa1386430-mRNA-1
tig0020816 CDS 48052 48738 48052 ID=Msa1386430-mRNA-1:cds;Parent=Msa1386430-mRNA-1
tig0020816 three_prime_UTR 47840 48051 47840 ID=Msa1386430-mRNA-1:three_prime_utr;Parent=Msa1386430-mRNA-1
Gene Sequence

>Msa1386430

ATGGAGGTTTCCGGCACCGTTCTCCGTCGTACAACCTACATCTCCGGCGTTGGGACTCACACCCGTTCTCATGGCGTTGTTCCTCGGAGAGTGAGGGTGTCTATGGGGTCTGGTTTCCATGATGAGGGTCACGTGCAGTATTACCAAGACGTGAAGAAAAAAACAGAAACTGTTATCATAAGCAACAAGAAGAAGATGAAATTGCTCAAACGTCTCTCTAAAAACGCTTCTGAATTACCTCAATTAGGGTTTGCTCAACATCCTAATCTACCTAATCTCTTGGGTCAACTTCACCAAAGCCTCGCGATGCAGGATGGTGGTGAAGAATTACTTAGAGAGCTAGAGAAAGTAAGAGCAGGGGAGAAGGAATTGAAGAAAAAAATGAAACAAGAGAAGAAAAAGGCTAAACTAAAACCCTCCAAGATGAAAACTTGTAATAAATCTGAATCGTCGTCATCTTCATCCTCTGAATCTGAGTCAAGTGATAGTGATTGTGATGTTGCCACAAAGCCGGTGGATGAATTGGAATTGAAGCAGAAGCAACCTATGCTATCCATACCTGAAGATTCTACTTCACATCATCATGTTATGGATGTGTGCACTACAAATAATGCATCTCTTGTTACTGGGTTTAAGAAAGAGACTAATGTGGTTATCCCTGCAGCTCAAAAGAGGATTGAAGTTTGCATGGGTAACAAATGCAAAAAATCAGGGGCTGCTACATTGTTACAAGAGTTTGAGAAGGTAGTAGGTGTTGAAGGTGAAGGTGTTGTTGTTGGATGCAAGTGTATGGGGAAGTGTAAAACTGCTCCTAATGTGAGAATTCAGAATTCTGTTGATCTTAACATGGTTCAGGGAATTGATGATTCTGTTAAAATTCCAAGTAACCCTCTCTGCATTGGAGTTGGTCTAGAGGATGTGGATACCATTGTGGCTAGGTTTTTAGGGGAGGATTACAAAGATGTGGGTACGGTTGCTGCAACTTCTTCATGA

Protein sequence

>Msa1386430

MEVSGTVLRRTTYISGVGTHTRSHGVVPRRVRVSMGSGFHDEGHVQYYQDVKKKTETVIISNKKKMKLLKRLSKNASELPQLGFAQHPNLPNLLGQLHQSLAMQDGGEELLRELEKVRAGEKELKKKMKQEKKKAKLKPSKMKTCNKSESSSSSSSESESSDSDCDVATKPVDELELKQKQPMLSIPEDSTSHHHVMDVCTTNNASLVTGFKKETNVVIPAAQKRIEVCMGNKCKKSGAATLLQEFEKVVGVEGEGVVVGCKCMGKCKTAPNVRIQNSVDLNMVQGIDDSVKIPSNPLCIGVGLEDVDTIVARFLGEDYKDVGTVAATSS*