Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420860 | sp|Q9LYG9|MSL10_ARATH | 50.069 | 721 | 313 | 11 | 40 | 747 | 44 | 730 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420860 | A0A072VHB6 | 95.845 | 746 | 28 | 2 | 3 | 747 | 2 | 745 | 0.0 | 1454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001780 | Msa1420860 | 0.805751 | 1.147692e-49 | -8.615850e-47 |
| Msa0003700 | Msa1420860 | 0.809060 | 2.280484e-50 | -8.615850e-47 |
| Msa0017510 | Msa1420860 | 0.855413 | 6.413811e-62 | -8.615850e-47 |
| Msa0020930 | Msa1420860 | 0.800816 | 1.207097e-48 | -8.615850e-47 |
| Msa0031340 | Msa1420860 | 0.803781 | 2.958559e-49 | -8.615850e-47 |
| Msa0045790 | Msa1420860 | 0.819612 | 1.059808e-52 | -8.615850e-47 |
| Msa0046160 | Msa1420860 | 0.812661 | 3.788369e-51 | -8.615850e-47 |
| Msa0068680 | Msa1420860 | 0.820373 | 7.098854e-53 | -8.615850e-47 |
| Msa0076250 | Msa1420860 | 0.807582 | 4.710581e-50 | -8.615850e-47 |
| Msa0095560 | Msa1420860 | 0.811096 | 8.306471e-51 | -8.615850e-47 |
| Msa0110970 | Msa1420860 | 0.817669 | 2.925267e-52 | -8.615850e-47 |
| Msa0114060 | Msa1420860 | 0.809001 | 2.347792e-50 | -8.615850e-47 |
| Msa1353980 | Msa1420860 | 0.802548 | 5.324430e-49 | -8.615850e-47 |
| Msa1359040 | Msa1420860 | 0.818334 | 2.069944e-52 | -8.615850e-47 |
| Msa1367080 | Msa1420860 | 0.803754 | 2.997842e-49 | -8.615850e-47 |
| Msa1372760 | Msa1420860 | 0.809770 | 1.605762e-50 | -8.615850e-47 |
| Msa1374040 | Msa1420860 | 0.811732 | 6.042724e-51 | -8.615850e-47 |
| Msa1374550 | Msa1420860 | 0.822033 | 2.940454e-53 | -8.615850e-47 |
| Msa1385000 | Msa1420860 | 0.800691 | 1.280113e-48 | -8.615850e-47 |
| Msa1398340 | Msa1420860 | 0.800929 | 1.144329e-48 | -8.615850e-47 |
| Msa1402400 | Msa1420860 | 0.804592 | 2.005966e-49 | -8.615850e-47 |
| Msa1409700 | Msa1420860 | 0.807030 | 6.168642e-50 | -8.615850e-47 |
| Msa1409870 | Msa1420860 | 0.816745 | 4.719379e-52 | -8.615850e-47 |
| Msa1420860 | Msa1423880 | 0.801965 | 7.019146e-49 | -8.615850e-47 |
| Msa1420860 | Msa1426000 | 0.808127 | 3.608504e-50 | -8.615850e-47 |
| Msa1420860 | Msa1429680 | 0.802584 | 5.233790e-49 | -8.615850e-47 |
| Msa1420860 | Msa1436480 | 0.810673 | 1.025375e-50 | -8.615850e-47 |
| Msa1420860 | Msa1438250 | 0.811532 | 6.677881e-51 | -8.615850e-47 |
| Msa1420860 | Msa1452120 | 0.809649 | 1.704796e-50 | -8.615850e-47 |
| Msa1420860 | Msa1452240 | 0.834791 | 2.444015e-56 | -8.615850e-47 |
| Msa1420860 | Msa1454120 | 0.800080 | 1.704812e-48 | -8.615850e-47 |
| Msa1420860 | Msa1460020 | 0.820075 | 8.308226e-53 | -8.615850e-47 |
| Msa1420860 | Msa1466540 | 0.817533 | 3.138472e-52 | -8.615850e-47 |
| Msa0627450 | Msa1420860 | 0.837603 | 4.714873e-57 | -8.615850e-47 |
| Msa0648880 | Msa1420860 | 0.810863 | 9.329267e-51 | -8.615850e-47 |
| Msa0657970 | Msa1420860 | 0.826673 | 2.384407e-54 | -8.615850e-47 |
| Msa0667050 | Msa1420860 | 0.801391 | 9.206118e-49 | -8.615850e-47 |
| Msa0682550 | Msa1420860 | 0.802362 | 5.814949e-49 | -8.615850e-47 |
| Msa0683510 | Msa1420860 | 0.841907 | 3.574643e-58 | -8.615850e-47 |
| Msa0691380 | Msa1420860 | 0.817279 | 3.581164e-52 | -8.615850e-47 |
| Msa0693380 | Msa1420860 | 0.824394 | 8.267130e-54 | -8.615850e-47 |
| Msa0723990 | Msa1420860 | 0.802626 | 5.132289e-49 | -8.615850e-47 |
| Msa0760130 | Msa1420860 | 0.808229 | 3.431241e-50 | -8.615850e-47 |
| Msa0764570 | Msa1420860 | 0.807806 | 4.223093e-50 | -8.615850e-47 |
| Msa0767300 | Msa1420860 | 0.826332 | 2.875027e-54 | -8.615850e-47 |
| Msa0801760 | Msa1420860 | 0.805208 | 1.491818e-49 | -8.615850e-47 |
| Msa0816710 | Msa1420860 | 0.818311 | 2.094580e-52 | -8.615850e-47 |
| Msa0820770 | Msa1420860 | 0.800170 | 1.634138e-48 | -8.615850e-47 |
| Msa0824660 | Msa1420860 | 0.805375 | 1.376205e-49 | -8.615850e-47 |
| Msa0828560 | Msa1420860 | 0.812026 | 5.213617e-51 | -8.615850e-47 |
| Msa0829620 | Msa1420860 | 0.817711 | 2.861731e-52 | -8.615850e-47 |
| Msa0832370 | Msa1420860 | 0.800472 | 1.418392e-48 | -8.615850e-47 |
| Msa0121380 | Msa1420860 | 0.801513 | 8.689204e-49 | -8.615850e-47 |
| Msa0140780 | Msa1420860 | 0.821412 | 4.092752e-53 | -8.615850e-47 |
| Msa0146260 | Msa1420860 | 0.817494 | 3.203334e-52 | -8.615850e-47 |
| Msa0157290 | Msa1420860 | 0.855992 | 4.348293e-62 | -8.615850e-47 |
| Msa0159930 | Msa1420860 | 0.818103 | 2.333847e-52 | -8.615850e-47 |
| Msa0169860 | Msa1420860 | 0.811573 | 6.543497e-51 | -8.615850e-47 |
| Msa0191250 | Msa1420860 | 0.823248 | 1.534355e-53 | -8.615850e-47 |
| Msa0200260 | Msa1420860 | 0.825146 | 5.496539e-54 | -8.615850e-47 |
| Msa0202950 | Msa1420860 | 0.911212 | 7.850506e-83 | -8.615850e-47 |
| Msa0211150 | Msa1420860 | 0.806475 | 8.081009e-50 | -8.615850e-47 |
| Msa0212990 | Msa1420860 | 0.820480 | 6.710219e-53 | -8.615850e-47 |
| Msa0213520 | Msa1420860 | 0.814343 | 1.617111e-51 | -8.615850e-47 |
| Msa0220580 | Msa1420860 | 0.841446 | 4.728736e-58 | -8.615850e-47 |
| Msa0220740 | Msa1420860 | 0.814084 | 1.844285e-51 | -8.615850e-47 |
| Msa1238930 | Msa1420860 | 0.809227 | 2.099887e-50 | -8.615850e-47 |
| Msa1270610 | Msa1420860 | 0.825247 | 5.200947e-54 | -8.615850e-47 |
| Msa1278840 | Msa1420860 | 0.811953 | 5.407887e-51 | -8.615850e-47 |
| Msa1283860 | Msa1420860 | 0.801774 | 7.682036e-49 | -8.615850e-47 |
| Msa1293770 | Msa1420860 | 0.809480 | 1.853132e-50 | -8.615850e-47 |
| Msa1297290 | Msa1420860 | 0.800289 | 1.545544e-48 | -8.615850e-47 |
| Msa1303250 | Msa1420860 | 0.800150 | 1.649441e-48 | -8.615850e-47 |
| Msa1306840 | Msa1420860 | 0.803723 | 3.042982e-49 | -8.615850e-47 |
| Msa1306850 | Msa1420860 | 0.801849 | 7.415090e-49 | -8.615850e-47 |
| Msa1318990 | Msa1420860 | 0.804452 | 2.145668e-49 | -8.615850e-47 |
| Msa1322860 | Msa1420860 | 0.804163 | 2.464998e-49 | -8.615850e-47 |
| Msa1327680 | Msa1420860 | 0.811392 | 7.162405e-51 | -8.615850e-47 |
| Msa1328710 | Msa1420860 | 0.807712 | 4.420278e-50 | -8.615850e-47 |
| Msa1331000 | Msa1420860 | 0.805870 | 1.083343e-49 | -8.615850e-47 |
| Msa1331910 | Msa1420860 | 0.800488 | 1.408123e-48 | -8.615850e-47 |
| Msa0376350 | Msa1420860 | 0.836093 | 1.144903e-56 | -8.615850e-47 |
| Msa0388960 | Msa1420860 | 0.802582 | 5.238522e-49 | -8.615850e-47 |
| Msa0389340 | Msa1420860 | 0.800943 | 1.137076e-48 | -8.615850e-47 |
| Msa0393080 | Msa1420860 | 0.800806 | 1.212699e-48 | -8.615850e-47 |
| Msa0410650 | Msa1420860 | 0.817429 | 3.313762e-52 | -8.615850e-47 |
| Msa0417270 | Msa1420860 | 0.803858 | 2.851914e-49 | -8.615850e-47 |
| Msa0417880 | Msa1420860 | 0.835975 | 1.227093e-56 | -8.615850e-47 |
| Msa0424790 | Msa1420860 | 0.834727 | 2.534978e-56 | -8.615850e-47 |
| Msa0440750 | Msa1420860 | 0.814053 | 1.873400e-51 | -8.615850e-47 |
| Msa0443260 | Msa1420860 | 0.811387 | 7.182846e-51 | -8.615850e-47 |
| Msa0467430 | Msa1420860 | 0.822087 | 2.857148e-53 | -8.615850e-47 |
| Msa0467490 | Msa1420860 | 0.808174 | 3.525057e-50 | -8.615850e-47 |
| Msa0990350 | Msa1420860 | 0.804254 | 2.359838e-49 | -8.615850e-47 |
| Msa1004840 | Msa1420860 | 0.807738 | 4.364384e-50 | -8.615850e-47 |
| Msa1041670 | Msa1420860 | 0.806006 | 1.014423e-49 | -8.615850e-47 |
| Msa1063950 | Msa1420860 | 0.806634 | 7.477038e-50 | -8.615850e-47 |
| Msa1081330 | Msa1420860 | 0.802615 | 5.158646e-49 | -8.615850e-47 |
| Msa1082500 | Msa1420860 | 0.827268 | 1.718738e-54 | -8.615850e-47 |
| Msa1085200 | Msa1420860 | 0.819567 | 1.085556e-52 | -8.615850e-47 |
| Msa0243100 | Msa1420860 | 0.844105 | 9.291683e-59 | -8.615850e-47 |
| Msa0244860 | Msa1420860 | 0.819748 | 9.866224e-53 | -8.615850e-47 |
| Msa0260610 | Msa1420860 | 0.800228 | 1.590482e-48 | -8.615850e-47 |
| Msa0261340 | Msa1420860 | 0.812060 | 5.127559e-51 | -8.615850e-47 |
| Msa0283450 | Msa1420860 | 0.820113 | 8.140581e-53 | -8.615850e-47 |
| Msa0283520 | Msa1420860 | 0.812971 | 3.241251e-51 | -8.615850e-47 |
| Msa0284420 | Msa1420860 | 0.921433 | 3.602026e-88 | -8.615850e-47 |
| Msa0287650 | Msa1420860 | 0.829685 | 4.482426e-55 | -8.615850e-47 |
| Msa0311860 | Msa1420860 | 0.815572 | 8.629888e-52 | -8.615850e-47 |
| Msa0317730 | Msa1420860 | 0.812009 | 5.258510e-51 | -8.615850e-47 |
| Msa0322690 | Msa1420860 | 0.818176 | 2.247303e-52 | -8.615850e-47 |
| Msa0330340 | Msa1420860 | 0.803891 | 2.807258e-49 | -8.615850e-47 |
| Msa0332000 | Msa1420860 | 0.822300 | 2.550874e-53 | -8.615850e-47 |
| Msa0333920 | Msa1420860 | 0.804799 | 1.816107e-49 | -8.615850e-47 |
| Msa0334040 | Msa1420860 | 0.800426 | 1.449122e-48 | -8.615850e-47 |
| Msa0341540 | Msa1420860 | 0.822644 | 2.121863e-53 | -8.615850e-47 |
| Msa0345970 | Msa1420860 | 0.809524 | 1.813751e-50 | -8.615850e-47 |
| Msa0363070 | Msa1420860 | 0.813920 | 2.004620e-51 | -8.615850e-47 |
| Msa0363200 | Msa1420860 | 0.803639 | 3.167675e-49 | -8.615850e-47 |
| Msa1108160 | Msa1420860 | 0.834586 | 2.751370e-56 | -8.615850e-47 |
| Msa1131220 | Msa1420860 | 0.817395 | 3.371762e-52 | -8.615850e-47 |
| Msa1137570 | Msa1420860 | 0.801853 | 7.400230e-49 | -8.615850e-47 |
| Msa1140210 | Msa1420860 | 0.811139 | 8.130329e-51 | -8.615850e-47 |
| Msa1151910 | Msa1420860 | 0.812913 | 3.337682e-51 | -8.615850e-47 |
| Msa1154710 | Msa1420860 | 0.813009 | 3.179646e-51 | -8.615850e-47 |
| Msa1166560 | Msa1420860 | 0.809045 | 2.297669e-50 | -8.615850e-47 |
| Msa1168160 | Msa1420860 | 0.804753 | 1.856906e-49 | -8.615850e-47 |
| Msa1170440 | Msa1420860 | 0.806353 | 8.570686e-50 | -8.615850e-47 |
| Msa1179940 | Msa1420860 | 0.824451 | 8.014815e-54 | -8.615850e-47 |
| Msa1179970 | Msa1420860 | 0.818340 | 2.062692e-52 | -8.615850e-47 |
| Msa1199570 | Msa1420860 | 0.805651 | 1.204314e-49 | -8.615850e-47 |
| Msa1212940 | Msa1420860 | 0.803827 | 2.894635e-49 | -8.615850e-47 |
| Msa1222970 | Msa1420860 | 0.803562 | 3.285002e-49 | -8.615850e-47 |
| Msa0484780 | Msa1420860 | 0.815725 | 7.978578e-52 | -8.615850e-47 |
| Msa0495320 | Msa1420860 | 0.804289 | 2.320535e-49 | -8.615850e-47 |
| Msa0503060 | Msa1420860 | 0.821950 | 3.073966e-53 | -8.615850e-47 |
| Msa0503580 | Msa1420860 | 0.811598 | 6.462072e-51 | -8.615850e-47 |
| Msa0507680 | Msa1420860 | 0.811001 | 8.710380e-51 | -8.615850e-47 |
| Msa0509610 | Msa1420860 | 0.809201 | 2.126756e-50 | -8.615850e-47 |
| Msa0512900 | Msa1420860 | 0.820866 | 5.468268e-53 | -8.615850e-47 |
| Msa0516170 | Msa1420860 | 0.832856 | 7.445282e-56 | -8.615850e-47 |
| Msa0523460 | Msa1420860 | 0.825445 | 4.668598e-54 | -8.615850e-47 |
| Msa0563840 | Msa1420860 | 0.804699 | 1.905575e-49 | -8.615850e-47 |
| Msa0574890 | Msa1420860 | 0.800661 | 1.298014e-48 | -8.615850e-47 |
| Msa0602460 | Msa1420860 | 0.802274 | 6.064794e-49 | -8.615850e-47 |
| Msa0843220 | Msa1420860 | 0.813136 | 2.981992e-51 | -8.615850e-47 |
| Msa0844240 | Msa1420860 | 0.815262 | 1.011482e-51 | -8.615850e-47 |
| Msa0861870 | Msa1420860 | 0.813375 | 2.642189e-51 | -8.615850e-47 |
| Msa0867890 | Msa1420860 | 0.832956 | 7.029143e-56 | -8.615850e-47 |
| Msa0870530 | Msa1420860 | 0.801953 | 7.059910e-49 | -8.615850e-47 |
| Msa0870550 | Msa1420860 | 0.803920 | 2.768489e-49 | -8.615850e-47 |
| Msa0880140 | Msa1420860 | 0.857131 | 2.011044e-62 | -8.615850e-47 |
| Msa0880950 | Msa1420860 | 0.801067 | 1.072547e-48 | -8.615850e-47 |
| Msa0903690 | Msa1420860 | 0.805706 | 1.172516e-49 | -8.615850e-47 |
| Msa0908050 | Msa1420860 | 0.805390 | 1.366200e-49 | -8.615850e-47 |
| Msa0909120 | Msa1420860 | 0.810868 | 9.303575e-51 | -8.615850e-47 |
| Msa0909140 | Msa1420860 | 0.823018 | 1.735821e-53 | -8.615850e-47 |
| Msa0924310 | Msa1420860 | 0.825599 | 4.292621e-54 | -8.615850e-47 |
| Msa0926890 | Msa1420860 | 0.807490 | 4.926662e-50 | -8.615850e-47 |
| Msa0935670 | Msa1420860 | 0.817833 | 2.686144e-52 | -8.615850e-47 |
| Msa0954130 | Msa1420860 | 0.809048 | 2.294140e-50 | -8.615850e-47 |
| Msa0954530 | Msa1420860 | 0.808125 | 3.611738e-50 | -8.615850e-47 |
| Msa0954550 | Msa1420860 | 0.804724 | 1.883081e-49 | -8.615850e-47 |
| Msa0961690 | Msa1420860 | 0.810086 | 1.372744e-50 | -8.615850e-47 |
| Msa0969520 | Msa1420860 | 0.812243 | 4.677320e-51 | -8.615850e-47 |
| Msa0972100 | Msa1420860 | 0.812125 | 4.962945e-51 | -8.615850e-47 |
| Msa0973160 | Msa1420860 | 0.806376 | 8.478727e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420860 | MtrunA17_Chr2g0300341 | 93.432 | 746 | 26 | 3 | 3 | 747 | 2 | 725 | 0.0 | 1405 |
| Msa1420860 | MtrunA17_Chr3g0136211 | 51.832 | 764 | 318 | 16 | 16 | 750 | 21 | 763 | 0.0 | 705 |
| Msa1420860 | MtrunA17_Chr3g0136161 | 52.518 | 695 | 290 | 11 | 81 | 750 | 85 | 764 | 0.0 | 695 |
| Msa1420860 | MtrunA17_Chr3g0136141 | 49.202 | 752 | 338 | 14 | 16 | 750 | 5 | 729 | 0.0 | 665 |
| Msa1420860 | MtrunA17_Chr8g0369461 | 46.014 | 715 | 352 | 10 | 39 | 747 | 2 | 688 | 0.0 | 578 |
| Msa1420860 | MtrunA17_Chr1g0211561 | 41.565 | 741 | 349 | 14 | 54 | 747 | 204 | 907 | 1.45e-178 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420860 | AT5G12080.1 | 50.069 | 721 | 313 | 11 | 40 | 747 | 44 | 730 | 0.0 | 712 |
| Msa1420860 | AT5G12080.2 | 50.069 | 721 | 313 | 11 | 40 | 747 | 44 | 730 | 0.0 | 712 |
| Msa1420860 | AT5G12080.3 | 50.069 | 721 | 313 | 11 | 40 | 747 | 44 | 730 | 0.0 | 712 |
| Msa1420860 | AT5G19520.1 | 45.225 | 754 | 368 | 14 | 18 | 749 | 11 | 741 | 0.0 | 610 |
| Msa1420860 | AT5G19520.2 | 45.225 | 754 | 368 | 14 | 18 | 749 | 11 | 741 | 0.0 | 610 |
| Msa1420860 | AT1G53470.1 | 43.165 | 695 | 333 | 10 | 93 | 747 | 185 | 857 | 6.78e-180 | 537 |
| Msa1420860 | AT3G14810.1 | 43.605 | 688 | 333 | 11 | 92 | 747 | 192 | 856 | 3.02e-172 | 518 |
| Msa1420860 | AT1G78610.1 | 43.286 | 633 | 316 | 6 | 144 | 747 | 211 | 829 | 3.42e-171 | 514 |
| Msa1420860 | AT2G17010.1 | 41.732 | 635 | 340 | 5 | 139 | 747 | 257 | 887 | 3.89e-171 | 516 |
| Msa1420860 | AT2G17000.2 | 39.501 | 681 | 358 | 8 | 92 | 747 | 169 | 820 | 1.72e-160 | 486 |
| Msa1420860 | AT2G17000.1 | 39.501 | 681 | 358 | 8 | 92 | 747 | 169 | 820 | 2.92e-160 | 486 |
| Msa1420860 | AT3G14810.2 | 40.988 | 688 | 316 | 12 | 92 | 747 | 192 | 821 | 4.72e-152 | 464 |
| Msa1420860 | AT2G17010.2 | 38.832 | 394 | 211 | 5 | 139 | 506 | 257 | 646 | 2.85e-77 | 262 |
Find 138 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATTCTTAGGACTCTTTC+TGG | 0.177622 | tig0024875:-35484 | Msa1420860:CDS |
| GGTATAATTCTGAAAGTTTA+TGG | 0.180611 | tig0024875:+33383 | None:intergenic |
| AATTAGTTTAATGTAGTTTA+AGG | 0.185955 | tig0024875:-33142 | Msa1420860:three_prime_UTR |
| AGAGAACAAGAAAAGTTATT+AGG | 0.203742 | tig0024875:-35654 | Msa1420860:CDS |
| ATGGCTTTGTTTGGTACTTT+TGG | 0.204575 | tig0024875:-35707 | Msa1420860:CDS |
| GGTTGCAACATAAGAAAATT+TGG | 0.208265 | tig0024875:-35900 | Msa1420860:CDS |
| TCAACAAAGGTTGCACCTTT+TGG | 0.237025 | tig0024875:+36201 | None:intergenic |
| GCTTCTGCATGTGACCCTTT+TGG | 0.248007 | tig0024875:+36342 | None:intergenic |
| AACGAAGAAAACAGTGATTT+TGG | 0.250511 | tig0024875:-36435 | Msa1420860:CDS |
| TTGCAACCTATGAACAATTA+AGG | 0.251983 | tig0024875:+35915 | None:intergenic |
| TTAGTTGCAAGAACTGAATT+TGG | 0.254803 | tig0024875:+33948 | None:intergenic |
| TCAACAGAATCACTCATTTC+AGG | 0.258495 | tig0024875:+33900 | None:intergenic |
| TCCTACAACAAGCACTTTCT+TGG | 0.263839 | tig0024875:-36274 | Msa1420860:CDS |
| TCTTTCTGGTCCTCCTTTGA+TGG | 0.279790 | tig0024875:-35470 | Msa1420860:CDS |
| TAGTTGGTTTATCAGTGTTC+TGG | 0.286856 | tig0024875:-35815 | Msa1420860:CDS |
| TATTGTGTGGCTGCTTGTTA+TGG | 0.288544 | tig0024875:-34405 | Msa1420860:CDS |
| ACATAAGAAAATTTGGAGTT+TGG | 0.291383 | tig0024875:-35893 | Msa1420860:CDS |
| GAGAACAAGAAAAGTTATTA+GGG | 0.300503 | tig0024875:-35653 | Msa1420860:CDS |
| ATTAATGTTATCCGGAGTTC+TGG | 0.308605 | tig0024875:-35277 | Msa1420860:CDS |
| TTCCTCCGTGGTTTCATGTA+TGG | 0.316689 | tig0024875:+33241 | None:intergenic |
| ATTGTGTGGCTGCTTGTTAT+GGG | 0.325380 | tig0024875:-34404 | Msa1420860:CDS |
| TTACTTGTGGTGTTTGTGTT+TGG | 0.332699 | tig0024875:-34338 | Msa1420860:CDS |
| TCTTCTTCTTCCTTCCCTCT+TGG | 0.336355 | tig0024875:+36078 | None:intergenic |
| GGTTATATTAGTTATAGTTT+AGG | 0.342330 | tig0024875:-33090 | Msa1420860:three_prime_UTR |
| ACAAAATCTTACTTGCTTCC+TGG | 0.345813 | tig0024875:+35127 | None:intergenic |
| TGTACTTTGTTTATGGTGTT+AGG | 0.351594 | tig0024875:-35750 | Msa1420860:CDS |
| GAATGTAAACAAGATGAAAA+TGG | 0.355952 | tig0024875:-33424 | Msa1420860:CDS |
| TTGCAACCTTAATTGTTCAT+AGG | 0.357935 | tig0024875:-35921 | Msa1420860:CDS |
| GTGTTATTGCATCAGCTATA+TGG | 0.361705 | tig0024875:-35597 | Msa1420860:CDS |
| AGATCTTCTGCTGCTCTTAT+CGG | 0.365041 | tig0024875:+33362 | None:intergenic |
| AAATTTGGAGTTTGGAACTT+TGG | 0.368355 | tig0024875:-35885 | Msa1420860:CDS |
| TTGACTATTACATTGTGGTT+TGG | 0.373137 | tig0024875:+33456 | None:intergenic |
| GCGATGAGAAAGAGAAATAA+AGG | 0.377081 | tig0024875:-33199 | Msa1420860:three_prime_UTR |
| GTTGAAGTGAGTAAGATATC+TGG | 0.380920 | tig0024875:-36012 | Msa1420860:CDS |
| CCTCAGTTCATTTCCAAGAT+GGG | 0.383520 | tig0024875:-36378 | Msa1420860:CDS |
| AAGGAGTTGTTAGATATAGT+TGG | 0.384642 | tig0024875:-33176 | Msa1420860:three_prime_UTR |
| CTGGTAGATTAGTCACTAGT+TGG | 0.386260 | tig0024875:-35831 | Msa1420860:CDS |
| GGTTCCACCATTCTTGACTT+TGG | 0.402306 | tig0024875:+36231 | None:intergenic |
| GTTACATTGGTAATTATCTC+TGG | 0.407669 | tig0024875:-35850 | Msa1420860:CDS |
| TGGTCCTCCTTTGATGGAGA+TGG | 0.413985 | tig0024875:-35464 | Msa1420860:CDS |
| TCCTCAGTTCATTTCCAAGA+TGG | 0.417013 | tig0024875:-36379 | Msa1420860:CDS |
| TTAGAGATAATGAGAAGAAA+GGG | 0.418341 | tig0024875:-35387 | Msa1420860:CDS |
| ACTCCAAGGACCCCTTTGAT+TGG | 0.419468 | tig0024875:-36105 | Msa1420860:CDS |
| TCTACTTCAATAGAAAGTAT+TGG | 0.419528 | tig0024875:-33861 | Msa1420860:CDS |
| AACAAGCAGCCACACAATAA+TGG | 0.421577 | tig0024875:+34409 | None:intergenic |
| TTGTGTCATTGATGGTGTTC+AGG | 0.422351 | tig0024875:-34243 | Msa1420860:intron |
| ACTCAAATGAAGAAGGTTGC+AGG | 0.428430 | tig0024875:-36171 | Msa1420860:CDS |
| ATTAGAGATAATGAGAAGAA+AGG | 0.431576 | tig0024875:-35388 | Msa1420860:CDS |
| AAGTTCATCTCGGTCATGTT+AGG | 0.436409 | tig0024875:-33272 | Msa1420860:CDS |
| AAGGATTGATTAATGTTATC+CGG | 0.442671 | tig0024875:-35285 | Msa1420860:CDS |
| AGTTAGTTATGATTAGTTGT+TGG | 0.446926 | tig0024875:-33111 | Msa1420860:three_prime_UTR |
| TTCAGGAATGTTGCTAAGCC+AGG | 0.450366 | tig0024875:-35145 | Msa1420860:CDS |
| GCCAAGAAAGTGCTTGTTGT+AGG | 0.450792 | tig0024875:+36273 | None:intergenic |
| GTAAACAAAAGAGGAAACTT+TGG | 0.455502 | tig0024875:-35990 | Msa1420860:CDS |
| GGTGATCGTTGTGTCATTGA+TGG | 0.459818 | tig0024875:-34251 | Msa1420860:CDS |
| TTCAAAGCCAAAGTCAAGAA+TGG | 0.466751 | tig0024875:-36238 | Msa1420860:CDS |
| CTCTTGGAGTACCAATCAAA+GGG | 0.470256 | tig0024875:+36094 | None:intergenic |
| AGAGGAAGTCTCTTAAGAAC+TGG | 0.476384 | tig0024875:-34916 | Msa1420860:CDS |
| TTTGAAGGAGCAGTTGAGAC+TGG | 0.480645 | tig0024875:-34947 | Msa1420860:CDS |
| GTACCAATCAAAGGGGTCCT+TGG | 0.481788 | tig0024875:+36102 | None:intergenic |
| AATGAAACAAGAGAAAGTTT+CGG | 0.484314 | tig0024875:-35320 | Msa1420860:CDS |
| AGCCAATCAGTAACTTCTAC+AGG | 0.486932 | tig0024875:-33926 | Msa1420860:CDS |
| AACAAGAGAAAGTTTCGGCT+TGG | 0.490058 | tig0024875:-35315 | Msa1420860:CDS |
| GGAGTTTGGAACTTTGGAAA+TGG | 0.491935 | tig0024875:-35879 | Msa1420860:CDS |
| CTCCTGTAGAAGTTACTGAT+TGG | 0.494395 | tig0024875:+33924 | None:intergenic |
| TCTCATCGCTGAAATTTCCT+CGG | 0.497238 | tig0024875:+33213 | None:intergenic |
| GGTTCATCTCCATCTCCAAA+AGG | 0.497270 | tig0024875:-36357 | Msa1420860:CDS |
| AGAAAGTCATTAACTTGTGA+TGG | 0.498825 | tig0024875:-36529 | Msa1420860:exon |
| GTTTCGGCTTGGACTATGAA+AGG | 0.499304 | tig0024875:-35304 | Msa1420860:CDS |
| TTCATCACAGCTCTTACTTG+TGG | 0.500942 | tig0024875:-34351 | Msa1420860:CDS |
| CAACAAGCACTTTCTTGGCT+AGG | 0.502903 | tig0024875:-36269 | Msa1420860:CDS |
| GAACTTCTTGCGGCAGAAGA+TGG | 0.503750 | tig0024875:+33289 | None:intergenic |
| AAATATAATAGCTTCAAATA+CGG | 0.509285 | tig0024875:+34301 | None:intergenic |
| ACATCTTCATAGATGCTCTC+TGG | 0.512638 | tig0024875:+35232 | None:intergenic |
| TACTAGTGAGTGGGAAGCGA+AGG | 0.513438 | tig0024875:-35185 | Msa1420860:CDS |
| TTGAGACTGGAAGAATTAAG+AGG | 0.513982 | tig0024875:-34934 | Msa1420860:CDS |
| CTTCCATCATGAACATCCCT+TGG | 0.519629 | tig0024875:+36141 | None:intergenic |
| GATTACATCACAAGGGCACT+TGG | 0.521911 | tig0024875:-35625 | Msa1420860:CDS |
| TGAGAAAGAGAAATAAAGGA+AGG | 0.523963 | tig0024875:-33195 | Msa1420860:three_prime_UTR |
| AGATGGAGATGAACCCATCT+TGG | 0.524950 | tig0024875:+36365 | None:intergenic |
| AGGGATGTTCATGATGGAAG+TGG | 0.533447 | tig0024875:-36138 | Msa1420860:CDS |
| CAACGATCACCGACATCGAA+CGG | 0.535380 | tig0024875:+34263 | None:intergenic |
| CAGAAGATCTGAATTAGTCC+TGG | 0.539822 | tig0024875:-33349 | Msa1420860:CDS |
| GGAAATGAACTGAGGAGAGT+AGG | 0.540395 | tig0024875:+36386 | None:intergenic |
| AGGAACTGGTTTCAGCAACA+TGG | 0.541457 | tig0024875:+36406 | None:intergenic |
| CCTCTTGGAGTACCAATCAA+AGG | 0.544324 | tig0024875:+36093 | None:intergenic |
| TAGTTTAATGTAGTTTAAGG+TGG | 0.544517 | tig0024875:-33139 | Msa1420860:three_prime_UTR |
| TTGTTCTCTTAACTCCATTG+TGG | 0.550795 | tig0024875:+35668 | None:intergenic |
| GAACTGAGGAGAGTAGGAAC+TGG | 0.550950 | tig0024875:+36392 | None:intergenic |
| AGATATCTGGTAAACAAAAG+AGG | 0.552232 | tig0024875:-35999 | Msa1420860:CDS |
| AGAAAAGACTCAAATGAAGA+AGG | 0.555011 | tig0024875:-36178 | Msa1420860:CDS |
| GTGGAACCACCATTTCCAAA+AGG | 0.555076 | tig0024875:-36216 | Msa1420860:CDS |
| TTTGATGGAGATGGCGGAGA+CGG | 0.555408 | tig0024875:-35455 | Msa1420860:CDS |
| GTTCATCTCCATCTCCAAAA+GGG | 0.561886 | tig0024875:-36356 | Msa1420860:CDS |
| GTGATGCATCCGTTCGATGT+CGG | 0.566606 | tig0024875:-34272 | Msa1420860:CDS |
| CATCGCTGAAATTTCCTCGG+TGG | 0.573660 | tig0024875:+33216 | None:intergenic |
| GAAATGGTGTGTGGTTACAT+TGG | 0.574703 | tig0024875:-35863 | Msa1420860:CDS |
| AGGTTGCAGGTGCTTCTCCA+AGG | 0.577926 | tig0024875:-36158 | Msa1420860:CDS |
| TAATGAAATTACTAGTGAGT+GGG | 0.578329 | tig0024875:-35194 | Msa1420860:CDS |
| GAAGTCTCTTAAGAACTGGC+TGG | 0.578390 | tig0024875:-34912 | Msa1420860:intron |
| GTACAAGTGATCGACGCTCT+AGG | 0.579348 | tig0024875:+34504 | None:intergenic |
| AATCATCAGGTGCATTGAGA+AGG | 0.580726 | tig0024875:-35023 | Msa1420860:intron |
| TCTCCAAGGGATGTTCATGA+TGG | 0.585708 | tig0024875:-36144 | Msa1420860:CDS |
| AAACCACAATGTAATAGTCA+AGG | 0.594135 | tig0024875:-33454 | Msa1420860:CDS |
| TGGTTTGGACGCCAGTGTTG+AGG | 0.594670 | tig0024875:+33471 | None:intergenic |
| TATCCTTGACTATTACATTG+TGG | 0.595108 | tig0024875:+33451 | None:intergenic |
| CTGCCGCAAGAAGTTCATCT+CGG | 0.595253 | tig0024875:-33282 | Msa1420860:CDS |
| ATGGAGATGGCGGAGACGGT+AGG | 0.595526 | tig0024875:-35451 | Msa1420860:CDS |
| GTCTCCGCCATCTCCATCAA+AGG | 0.596234 | tig0024875:+35457 | None:intergenic |
| CAAGGACAATTGCAGAAGCA+AGG | 0.596874 | tig0024875:+34438 | None:intergenic |
| GATTGGTACTCCAAGAGGGA+AGG | 0.602048 | tig0024875:-36088 | Msa1420860:CDS |
| GGTTGCAGGTGCTTCTCCAA+GGG | 0.604226 | tig0024875:-36157 | Msa1420860:CDS |
| ATAATGAAATTACTAGTGAG+TGG | 0.604878 | tig0024875:-35195 | Msa1420860:CDS |
| TCCTCCTTTGATGGAGATGG+CGG | 0.607211 | tig0024875:-35461 | Msa1420860:CDS |
| CTTTGATTGGTACTCCAAGA+GGG | 0.607672 | tig0024875:-36092 | Msa1420860:CDS |
| GGGTTCTTGATTACATCACA+AGG | 0.608300 | tig0024875:-35633 | Msa1420860:CDS |
| TATTGCATCAGCTATATGGT+TGG | 0.610508 | tig0024875:-35593 | Msa1420860:CDS |
| TCAACGTCTTGAAACTAAGT+CGG | 0.611336 | tig0024875:+35410 | None:intergenic |
| GTGGAACTGTTGTTACTCCA+AGG | 0.621056 | tig0024875:-36119 | Msa1420860:CDS |
| GTAGGTAAGAGTTCGAGTAG+AGG | 0.624001 | tig0024875:-35433 | Msa1420860:CDS |
| CCTTTGATTGGTACTCCAAG+AGG | 0.625879 | tig0024875:-36093 | Msa1420860:CDS |
| GGAACTTTGGAAATGGTGTG+TGG | 0.627006 | tig0024875:-35872 | Msa1420860:CDS |
| TGACCGAGATGAACTTCTTG+CGG | 0.628978 | tig0024875:+33279 | None:intergenic |
| AAAGCCAAAGTCAAGAATGG+TGG | 0.630980 | tig0024875:-36235 | Msa1420860:CDS |
| ACAAGAACAAGTCATTGATG+TGG | 0.631286 | tig0024875:-35356 | Msa1420860:CDS |
| GGAACTGGTTTCAGCAACAT+GGG | 0.638974 | tig0024875:+36407 | None:intergenic |
| TGGTAGACAATCCAGAACTC+CGG | 0.648538 | tig0024875:+35266 | None:intergenic |
| TGGAGAGTAGGCCTCAACAC+TGG | 0.648812 | tig0024875:-33482 | Msa1420860:CDS |
| TCCGCCATCTCCATCAAAGG+AGG | 0.655637 | tig0024875:+35460 | None:intergenic |
| ACACAATAATGGACAAAACA+AGG | 0.658392 | tig0024875:+34420 | None:intergenic |
| GCTCTCTGGTGTATAGCTGA+TGG | 0.661232 | tig0024875:+35246 | None:intergenic |
| GGTTCTTGATTACATCACAA+GGG | 0.683870 | tig0024875:-35632 | Msa1420860:CDS |
| CCCATCTTGGAAATGAACTG+AGG | 0.684400 | tig0024875:+36378 | None:intergenic |
| CAAGACCATACATGAAACCA+CGG | 0.696755 | tig0024875:-33246 | Msa1420860:exon |
| GCATTGAGAAGGATGATCTG+TGG | 0.710479 | tig0024875:-35012 | Msa1420860:CDS |
| TCTTGGAGTACCAATCAAAG+GGG | 0.738915 | tig0024875:+36095 | None:intergenic |
| ACCACGGAGGAAAACCACCG+AGG | 0.766259 | tig0024875:-33230 | Msa1420860:three_prime_UTR |
| GACCATACATGAAACCACGG+AGG | 0.773060 | tig0024875:-33243 | Msa1420860:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATATAATAAATGTATT+AGG | + | tig0024875:35597-35616 | None:intergenic | 10.0% |
| !!! | CTATTTTCTTTATCTATTTT+CGG | - | tig0024875:34888-34907 | Msa1420860:intron | 15.0% |
| !! | AAATATAATAGCTTCAAATA+CGG | + | tig0024875:35343-35362 | None:intergenic | 15.0% |
| !!! | AATTAGTTTAATGTAGTTTA+AGG | - | tig0024875:36499-36518 | Msa1420860:CDS | 15.0% |
| !!! | AAAGTTTTGTACTTTGTTTA+TGG | - | tig0024875:33884-33903 | Msa1420860:CDS | 20.0% |
| !! | CTGCTATATTAATGATATAA+GGG | + | tig0024875:35563-35582 | None:intergenic | 20.0% |
| !! | TCTGCTATATTAATGATATA+AGG | + | tig0024875:35564-35583 | None:intergenic | 20.0% |
| !!! | AAATTGATATATATCGACTT+AGG | - | tig0024875:35907-35926 | Msa1420860:CDS | 20.0% |
| !! | AATCTCAAATTGGTATAATA+AGG | + | tig0024875:35977-35996 | None:intergenic | 20.0% |
| !! | TTTCTAAATCAATCTCAAAT+TGG | + | tig0024875:35987-36006 | None:intergenic | 20.0% |
| !!! | ATTTGAGATTGATTTAGAAA+CGG | - | tig0024875:35987-36006 | Msa1420860:CDS | 20.0% |
| !! | ATAAACATTTATTCATTCGA+TGG | + | tig0024875:36080-36099 | None:intergenic | 20.0% |
| !! | GGTTATATTAGTTATAGTTT+AGG | - | tig0024875:36551-36570 | Msa1420860:five_prime_UTR | 20.0% |
| !!! | TTTGCTTTTGTTTGCATTTT+AGG | - | tig0024875:33689-33708 | Msa1420860:intron | 25.0% |
| !!! | TTGCTTTTGTTTGCATTTTA+GGG | - | tig0024875:33690-33709 | Msa1420860:intron | 25.0% |
| !! | ACATAAGAAAATTTGGAGTT+TGG | - | tig0024875:33748-33767 | Msa1420860:intron | 25.0% |
| ! | AGAGAACAAGAAAAGTTATT+AGG | - | tig0024875:33987-34006 | Msa1420860:CDS | 25.0% |
| ! | GAGAACAAGAAAAGTTATTA+GGG | - | tig0024875:33988-34007 | Msa1420860:CDS | 25.0% |
| !! | TTTTTCATCAGTACATTCTT+AGG | - | tig0024875:34146-34165 | Msa1420860:intron | 25.0% |
| ! | ATTAGAGATAATGAGAAGAA+AGG | - | tig0024875:34253-34272 | Msa1420860:CDS | 25.0% |
| ! | TTAGAGATAATGAGAAGAAA+GGG | - | tig0024875:34254-34273 | Msa1420860:CDS | 25.0% |
| ! | AATGAAACAAGAGAAAGTTT+CGG | - | tig0024875:34321-34340 | Msa1420860:CDS | 25.0% |
| ! | AAGGATTGATTAATGTTATC+CGG | - | tig0024875:34356-34375 | Msa1420860:CDS | 25.0% |
| ! | ATAATGAAATTACTAGTGAG+TGG | - | tig0024875:34446-34465 | Msa1420860:CDS | 25.0% |
| ! | TAATGAAATTACTAGTGAGT+GGG | - | tig0024875:34447-34466 | Msa1420860:CDS | 25.0% |
| !! | TGATTTAGATTCATTTTCTC+TGG | - | tig0024875:34562-34581 | Msa1420860:intron | 25.0% |
| ! | CAAAAAATATACATGCTGAA+AGG | + | tig0024875:35029-35048 | None:intergenic | 25.0% |
| ! | ATAACTTGATTGTTGGAATT+TGG | + | tig0024875:35054-35073 | None:intergenic | 25.0% |
| ! | CATATATTACTAATGTTTGC+AGG | - | tig0024875:35104-35123 | Msa1420860:intron | 25.0% |
| ! | ACTACAATCATTTATATTGC+AGG | - | tig0024875:35447-35466 | Msa1420860:CDS | 25.0% |
| !! | TCTACTTCAATAGAAAGTAT+TGG | - | tig0024875:35780-35799 | Msa1420860:CDS | 25.0% |
| ! | AAACAACGCGATTAAATTAA+TGG | - | tig0024875:35931-35950 | Msa1420860:CDS | 25.0% |
| !! | ATAACATGTTTTCAGATACT+TGG | - | tig0024875:36139-36158 | Msa1420860:CDS | 25.0% |
| ! | GAATGTAAACAAGATGAAAA+TGG | - | tig0024875:36217-36236 | Msa1420860:CDS | 25.0% |
| !! | GGTATAATTCTGAAAGTTTA+TGG | + | tig0024875:36261-36280 | None:intergenic | 25.0% |
| ! | TAGTTTAATGTAGTTTAAGG+TGG | - | tig0024875:36502-36521 | Msa1420860:CDS | 25.0% |
| !! | AGTTAGTTATGATTAGTTGT+TGG | - | tig0024875:36530-36549 | Msa1420860:exon | 25.0% |
| !! | AGAAAGTCATTAACTTGTGA+TGG | - | tig0024875:33112-33131 | Msa1420860:three_prime_UTR | 30.0% |
| ! | AACGAAGAAAACAGTGATTT+TGG | - | tig0024875:33206-33225 | Msa1420860:three_prime_UTR | 30.0% |
| ! | TTGAGTCTTTTCTTCAACAA+AGG | + | tig0024875:33456-33475 | None:intergenic | 30.0% |
| AGAAAAGACTCAAATGAAGA+AGG | - | tig0024875:33463-33482 | Msa1420860:CDS | 30.0% | |
| AGATATCTGGTAAACAAAAG+AGG | - | tig0024875:33642-33661 | Msa1420860:intron | 30.0% | |
| GTAAACAAAAGAGGAAACTT+TGG | - | tig0024875:33651-33670 | Msa1420860:intron | 30.0% | |
| TTGCAACCTTAATTGTTCAT+AGG | - | tig0024875:33720-33739 | Msa1420860:intron | 30.0% | |
| TTGCAACCTATGAACAATTA+AGG | + | tig0024875:33729-33748 | None:intergenic | 30.0% | |
| GGTTGCAACATAAGAAAATT+TGG | - | tig0024875:33741-33760 | Msa1420860:intron | 30.0% | |
| ! | AAATTTGGAGTTTGGAACTT+TGG | - | tig0024875:33756-33775 | Msa1420860:intron | 30.0% |
| ! | GTTACATTGGTAATTATCTC+TGG | - | tig0024875:33791-33810 | Msa1420860:intron | 30.0% |
| ! | TGTACTTTGTTTATGGTGTT+AGG | - | tig0024875:33891-33910 | Msa1420860:CDS | 30.0% |
| !! | AGAGTGTTCAAGCTTTTATA+TGG | - | tig0024875:33915-33934 | Msa1420860:CDS | 30.0% |
| !!! | AGCTTTTATATGGCTTTGTT+TGG | - | tig0024875:33925-33944 | Msa1420860:CDS | 30.0% |
| ! | TGGAGATTAATTTTCCACAA+TGG | - | tig0024875:33959-33978 | Msa1420860:CDS | 30.0% |
| !! | AATCGTCTAGATTTTTCGAT+CGG | - | tig0024875:34110-34129 | Msa1420860:intron | 30.0% |
| TGAATCTAAATCACATTGCA+GGG | + | tig0024875:34555-34574 | None:intergenic | 30.0% | |
| ATGAATCTAAATCACATTGC+AGG | + | tig0024875:34556-34575 | None:intergenic | 30.0% | |
| !!! | AGATTCATTTTCTCTGGAAT+TGG | - | tig0024875:34568-34587 | Msa1420860:intron | 30.0% |
| TGATGATTTCAACGGTTAAA+CGG | + | tig0024875:34606-34625 | None:intergenic | 30.0% | |
| !!! | AATTTGCTTCCACTTTTTGA+AGG | - | tig0024875:34679-34698 | Msa1420860:intron | 30.0% |
| ! | TTCAGATTAAAGGCATGTAT+CGG | - | tig0024875:34809-34828 | Msa1420860:intron | 30.0% |
| ! | CATTTTCTCCTACTTACTTA+TGG | + | tig0024875:34994-35013 | None:intergenic | 30.0% |
| !! | ACACAATAATGGACAAAACA+AGG | + | tig0024875:35224-35243 | None:intergenic | 30.0% |
| !! | TTGTTTTGTCCATTATTGTG+TGG | - | tig0024875:35223-35242 | Msa1420860:CDS | 30.0% |
| ! | CTGCAATATAAAGGATTTTG+AGG | + | tig0024875:35507-35526 | None:intergenic | 30.0% |
| TTAGTTGCAAGAACTGAATT+TGG | + | tig0024875:35696-35715 | None:intergenic | 30.0% | |
| !!! | CGCTTTTAATCTAGTTTTCA+AGG | + | tig0024875:35808-35827 | None:intergenic | 30.0% |
| TGGTATAATAAGGTGACTAA+AGG | + | tig0024875:35967-35986 | None:intergenic | 30.0% | |
| ! | TTGAAGCTTAAATGCAGTTT+TGG | + | tig0024875:36049-36068 | None:intergenic | 30.0% |
| TTGACTATTACATTGTGGTT+TGG | + | tig0024875:36188-36207 | None:intergenic | 30.0% | |
| AAACCACAATGTAATAGTCA+AGG | - | tig0024875:36187-36206 | Msa1420860:CDS | 30.0% | |
| TATCCTTGACTATTACATTG+TGG | + | tig0024875:36193-36212 | None:intergenic | 30.0% | |
| TGAGAAAGAGAAATAAAGGA+AGG | - | tig0024875:36446-36465 | Msa1420860:CDS | 30.0% | |
| AAGGAGTTGTTAGATATAGT+TGG | - | tig0024875:36465-36484 | Msa1420860:CDS | 30.0% | |
| CAACAAAACGACAAAAAACG+AGG | - | tig0024875:33163-33182 | Msa1420860:three_prime_UTR | 35.0% | |
| ! | GAAGAAAACAGTGATTTTGG+TGG | - | tig0024875:33209-33228 | Msa1420860:three_prime_UTR | 35.0% |
| TTCAAAGCCAAAGTCAAGAA+TGG | - | tig0024875:33403-33422 | Msa1420860:CDS | 35.0% | |
| GTTGAAGTGAGTAAGATATC+TGG | - | tig0024875:33629-33648 | Msa1420860:intron | 35.0% | |
| ! | TAGTTGGTTTATCAGTGTTC+TGG | - | tig0024875:33826-33845 | Msa1420860:intron | 35.0% |
| !!! | ATGGCTTTGTTTGGTACTTT+TGG | - | tig0024875:33934-33953 | Msa1420860:CDS | 35.0% |
| ! | TTTGTTTGGTACTTTTGGCA+TGG | - | tig0024875:33939-33958 | Msa1420860:CDS | 35.0% |
| TTGTTCTCTTAACTCCATTG+TGG | + | tig0024875:33976-33995 | None:intergenic | 35.0% | |
| GGTTCTTGATTACATCACAA+GGG | - | tig0024875:34009-34028 | Msa1420860:CDS | 35.0% | |
| ! | GTGTTATTGCATCAGCTATA+TGG | - | tig0024875:34044-34063 | Msa1420860:intron | 35.0% |
| TATTGCATCAGCTATATGGT+TGG | - | tig0024875:34048-34067 | Msa1420860:intron | 35.0% | |
| !! | ATCGTCTAGATTTTTCGATC+GGG | - | tig0024875:34111-34130 | Msa1420860:intron | 35.0% |
| TACATTCTTAGGACTCTTTC+TGG | - | tig0024875:34157-34176 | Msa1420860:intron | 35.0% | |
| TCAACGTCTTGAAACTAAGT+CGG | + | tig0024875:34234-34253 | None:intergenic | 35.0% | |
| ACAAGAACAAGTCATTGATG+TGG | - | tig0024875:34285-34304 | Msa1420860:CDS | 35.0% | |
| ATTAATGTTATCCGGAGTTC+TGG | - | tig0024875:34364-34383 | Msa1420860:CDS | 35.0% | |
| ACAAAATCTTACTTGCTTCC+TGG | + | tig0024875:34517-34536 | None:intergenic | 35.0% | |
| ! | CATTGCAGGGAGATTTTAAA+GGG | + | tig0024875:34542-34561 | None:intergenic | 35.0% |
| ! | ACATTGCAGGGAGATTTTAA+AGG | + | tig0024875:34543-34562 | None:intergenic | 35.0% |
| GTTTAACCGTTGAAATCATC+AGG | - | tig0024875:34605-34624 | Msa1420860:intron | 35.0% | |
| AATGCACCTGATGATTTCAA+CGG | + | tig0024875:34614-34633 | None:intergenic | 35.0% | |
| TTGAGACTGGAAGAATTAAG+AGG | - | tig0024875:34707-34726 | Msa1420860:intron | 35.0% | |
| ! | ATGCCTTTAATCTGAAGTGT+CGG | + | tig0024875:34805-34824 | None:intergenic | 35.0% |
| ATAGACGTGATTGAATGTGT+TGG | + | tig0024875:34872-34891 | None:intergenic | 35.0% | |
| CGGTTTCTACATATCAGTTT+CGG | - | tig0024875:34908-34927 | Msa1420860:intron | 35.0% | |
| TCTTGTAGCCATAAGTAAGT+AGG | - | tig0024875:34983-35002 | Msa1420860:CDS | 35.0% | |
| GTAAGTAGGAGAAAATGTGT+TGG | - | tig0024875:34997-35016 | Msa1420860:CDS | 35.0% | |
| CTGAGCAATAACTTGATTGT+TGG | + | tig0024875:35061-35080 | None:intergenic | 35.0% | |
| TTACTTGTGGTGTTTGTGTT+TGG | - | tig0024875:35303-35322 | Msa1420860:CDS | 35.0% | |
| ! | GTTCAGGTAGTTTTCAATTG+TGG | - | tig0024875:35414-35433 | Msa1420860:CDS | 35.0% |
| AATGGCAGTCTGCAATATAA+AGG | + | tig0024875:35516-35535 | None:intergenic | 35.0% | |
| !!! | CGATTAACCGTGGTTTTAAA+TGG | + | tig0024875:35534-35553 | None:intergenic | 35.0% |
| TCAACAGAATCACTCATTTC+AGG | + | tig0024875:35744-35763 | None:intergenic | 35.0% | |
| ! | TGAGATTGATTTAGAAACGG+AGG | - | tig0024875:35990-36009 | Msa1420860:CDS | 35.0% |
| ! | GAGATTGATTTAGAAACGGA+GGG | - | tig0024875:35991-36010 | Msa1420860:CDS | 35.0% |
| ! | TCCTCATGTTTTATCCAATC+CGG | + | tig0024875:36026-36045 | None:intergenic | 35.0% |
| ! | TTTTCAGATACTTGGAGAGT+AGG | - | tig0024875:36147-36166 | Msa1420860:CDS | 35.0% |
| ! | CAAAGATTTTCTTCATCTCC+AGG | + | tig0024875:36313-36332 | None:intergenic | 35.0% |
| GCGATGAGAAAGAGAAATAA+AGG | - | tig0024875:36442-36461 | Msa1420860:CDS | 35.0% | |
| TCCTCAGTTCATTTCCAAGA+TGG | - | tig0024875:33262-33281 | Msa1420860:CDS | 40.0% | |
| CCTCAGTTCATTTCCAAGAT+GGG | - | tig0024875:33263-33282 | Msa1420860:CDS | 40.0% | |
| GTTCATCTCCATCTCCAAAA+GGG | - | tig0024875:33285-33304 | Msa1420860:CDS | 40.0% | |
| TCCTACAACAAGCACTTTCT+TGG | - | tig0024875:33367-33386 | Msa1420860:CDS | 40.0% | |
| AAAGCCAAAGTCAAGAATGG+TGG | - | tig0024875:33406-33425 | Msa1420860:CDS | 40.0% | |
| !! | AAGGTTGCACCTTTTGGAAA+TGG | + | tig0024875:33437-33456 | None:intergenic | 40.0% |
| ! | TCAACAAAGGTTGCACCTTT+TGG | + | tig0024875:33443-33462 | None:intergenic | 40.0% |
| ACTCAAATGAAGAAGGTTGC+AGG | - | tig0024875:33470-33489 | Msa1420860:CDS | 40.0% | |
| ! | TCTTGGAGTACCAATCAAAG+GGG | + | tig0024875:33549-33568 | None:intergenic | 40.0% |
| ! | CTCTTGGAGTACCAATCAAA+GGG | + | tig0024875:33550-33569 | None:intergenic | 40.0% |
| CTTTGATTGGTACTCCAAGA+GGG | - | tig0024875:33549-33568 | Msa1420860:intron | 40.0% | |
| ! | GGAGTTTGGAACTTTGGAAA+TGG | - | tig0024875:33762-33781 | Msa1420860:intron | 40.0% |
| GAAATGGTGTGTGGTTACAT+TGG | - | tig0024875:33778-33797 | Msa1420860:intron | 40.0% | |
| ! | CTGGTAGATTAGTCACTAGT+TGG | - | tig0024875:33810-33829 | Msa1420860:intron | 40.0% |
| GGGTTCTTGATTACATCACA+AGG | - | tig0024875:34008-34027 | Msa1420860:CDS | 40.0% | |
| AACAAGAGAAAGTTTCGGCT+TGG | - | tig0024875:34326-34345 | Msa1420860:CDS | 40.0% | |
| ACATCTTCATAGATGCTCTC+TGG | + | tig0024875:34412-34431 | None:intergenic | 40.0% | |
| AATCATCAGGTGCATTGAGA+AGG | - | tig0024875:34618-34637 | Msa1420860:intron | 40.0% | |
| TCAACTGCTCCTTCAAAAAG+TGG | + | tig0024875:34691-34710 | None:intergenic | 40.0% | |
| AGAGGAAGTCTCTTAAGAAC+TGG | - | tig0024875:34725-34744 | Msa1420860:intron | 40.0% | |
| TGTCAGACACATACATGTGT+TGG | + | tig0024875:34838-34857 | None:intergenic | 40.0% | |
| AACAAGCAGCCACACAATAA+TGG | + | tig0024875:35235-35254 | None:intergenic | 40.0% | |
| ! | TATTGTGTGGCTGCTTGTTA+TGG | - | tig0024875:35236-35255 | Msa1420860:CDS | 40.0% |
| !! | ATTGTGTGGCTGCTTGTTAT+GGG | - | tig0024875:35237-35256 | Msa1420860:CDS | 40.0% |
| TTCATCACAGCTCTTACTTG+TGG | - | tig0024875:35290-35309 | Msa1420860:CDS | 40.0% | |
| !! | TTGTGTCATTGATGGTGTTC+AGG | - | tig0024875:35398-35417 | Msa1420860:CDS | 40.0% |
| ! | CAGACTGCCATTTAAAACCA+CGG | - | tig0024875:35524-35543 | Msa1420860:CDS | 40.0% |
| ! | AGGGTTATATCGATTAACCG+TGG | + | tig0024875:35544-35563 | None:intergenic | 40.0% |
| AGCCAATCAGTAACTTCTAC+AGG | - | tig0024875:35715-35734 | Msa1420860:CDS | 40.0% | |
| CTCCTGTAGAAGTTACTGAT+TGG | + | tig0024875:35720-35739 | None:intergenic | 40.0% | |
| ! | CTCATGTTTTATCCAATCCG+GGG | + | tig0024875:36024-36043 | None:intergenic | 40.0% |
| ! | CCTCATGTTTTATCCAATCC+GGG | + | tig0024875:36025-36044 | None:intergenic | 40.0% |
| AGATCTTCTGCTGCTCTTAT+CGG | + | tig0024875:36282-36301 | None:intergenic | 40.0% | |
| CAGAAGATCTGAATTAGTCC+TGG | - | tig0024875:36292-36311 | Msa1420860:CDS | 40.0% | |
| AAGTTCATCTCGGTCATGTT+AGG | - | tig0024875:36369-36388 | Msa1420860:CDS | 40.0% | |
| CAAGACCATACATGAAACCA+CGG | - | tig0024875:36395-36414 | Msa1420860:CDS | 40.0% | |
| TCTCATCGCTGAAATTTCCT+CGG | + | tig0024875:36431-36450 | None:intergenic | 40.0% | |
| ! | GGAACTGGTTTCAGCAACAT+GGG | + | tig0024875:33237-33256 | None:intergenic | 45.0% |
| ! | AGGAACTGGTTTCAGCAACA+TGG | + | tig0024875:33238-33257 | None:intergenic | 45.0% |
| GGAAATGAACTGAGGAGAGT+AGG | + | tig0024875:33258-33277 | None:intergenic | 45.0% | |
| CCCATCTTGGAAATGAACTG+AGG | + | tig0024875:33266-33285 | None:intergenic | 45.0% | |
| AGATGGAGATGAACCCATCT+TGG | + | tig0024875:33279-33298 | None:intergenic | 45.0% | |
| GGTTCATCTCCATCTCCAAA+AGG | - | tig0024875:33284-33303 | Msa1420860:CDS | 45.0% | |
| !! | GCCAAGAAAGTGCTTGTTGT+AGG | + | tig0024875:33371-33390 | None:intergenic | 45.0% |
| CAACAAGCACTTTCTTGGCT+AGG | - | tig0024875:33372-33391 | Msa1420860:CDS | 45.0% | |
| GGTTCCACCATTCTTGACTT+TGG | + | tig0024875:33413-33432 | None:intergenic | 45.0% | |
| GTGGAACCACCATTTCCAAA+AGG | - | tig0024875:33425-33444 | Msa1420860:CDS | 45.0% | |
| !! | GTTGCACCTTTTGGAAATGG+TGG | + | tig0024875:33434-33453 | None:intergenic | 45.0% |
| TCTCCAAGGGATGTTCATGA+TGG | - | tig0024875:33497-33516 | Msa1420860:intron | 45.0% | |
| CTTCCATCATGAACATCCCT+TGG | + | tig0024875:33503-33522 | None:intergenic | 45.0% | |
| ! | AGGGATGTTCATGATGGAAG+TGG | - | tig0024875:33503-33522 | Msa1420860:intron | 45.0% |
| GTGGAACTGTTGTTACTCCA+AGG | - | tig0024875:33522-33541 | Msa1420860:intron | 45.0% | |
| ! | CCTCTTGGAGTACCAATCAA+AGG | + | tig0024875:33551-33570 | None:intergenic | 45.0% |
| CCTTTGATTGGTACTCCAAG+AGG | - | tig0024875:33548-33567 | Msa1420860:intron | 45.0% | |
| TCTTCTTCTTCCTTCCCTCT+TGG | + | tig0024875:33566-33585 | None:intergenic | 45.0% | |
| ! | GGAACTTTGGAAATGGTGTG+TGG | - | tig0024875:33769-33788 | Msa1420860:intron | 45.0% |
| !! | GATTACATCACAAGGGCACT+TGG | - | tig0024875:34016-34035 | Msa1420860:CDS | 45.0% |
| ! | TCTTTCTGGTCCTCCTTTGA+TGG | - | tig0024875:34171-34190 | Msa1420860:intron | 45.0% |
| GTAGGTAAGAGTTCGAGTAG+AGG | - | tig0024875:34208-34227 | Msa1420860:intron | 45.0% | |
| !! | GTTTCGGCTTGGACTATGAA+AGG | - | tig0024875:34337-34356 | Msa1420860:CDS | 45.0% |
| TGGTAGACAATCCAGAACTC+CGG | + | tig0024875:34378-34397 | None:intergenic | 45.0% | |
| ! | CAGCTGCGTATCGAATTTTC+AGG | - | tig0024875:34479-34498 | Msa1420860:CDS | 45.0% |
| TTCAGGAATGTTGCTAAGCC+AGG | - | tig0024875:34496-34515 | Msa1420860:CDS | 45.0% | |
| GCATTGAGAAGGATGATCTG+TGG | - | tig0024875:34629-34648 | Msa1420860:intron | 45.0% | |
| TTTGAAGGAGCAGTTGAGAC+TGG | - | tig0024875:34694-34713 | Msa1420860:intron | 45.0% | |
| GAAGTCTCTTAAGAACTGGC+TGG | - | tig0024875:34729-34748 | Msa1420860:intron | 45.0% | |
| ! | GCACCGACACTTCAGATTAA+AGG | - | tig0024875:34799-34818 | Msa1420860:intron | 45.0% |
| TGTATGTGTCTGACACTCGT+AGG | - | tig0024875:34843-34862 | Msa1420860:intron | 45.0% | |
| CAAGGACAATTGCAGAAGCA+AGG | + | tig0024875:35206-35225 | None:intergenic | 45.0% | |
| ! | GGTGATCGTTGTGTCATTGA+TGG | - | tig0024875:35390-35409 | Msa1420860:CDS | 45.0% |
| ! | CCCGGATTGGATAAAACATG+AGG | - | tig0024875:36022-36041 | Msa1420860:CDS | 45.0% |
| TGACCGAGATGAACTTCTTG+CGG | + | tig0024875:36365-36384 | None:intergenic | 45.0% | |
| TTCCTCCGTGGTTTCATGTA+TGG | + | tig0024875:36403-36422 | None:intergenic | 45.0% | |
| GAACTGAGGAGAGTAGGAAC+TGG | + | tig0024875:33252-33271 | None:intergenic | 50.0% | |
| !! | GCATGTGACCCTTTTGGAGA+TGG | + | tig0024875:33296-33315 | None:intergenic | 50.0% |
| ! | GCTTCTGCATGTGACCCTTT+TGG | + | tig0024875:33302-33321 | None:intergenic | 50.0% |
| ACTCCAAGGACCCCTTTGAT+TGG | - | tig0024875:33536-33555 | Msa1420860:intron | 50.0% | |
| GTACCAATCAAAGGGGTCCT+TGG | + | tig0024875:33542-33561 | None:intergenic | 50.0% | |
| GATTGGTACTCCAAGAGGGA+AGG | - | tig0024875:33553-33572 | Msa1420860:intron | 50.0% | |
| TGGTCCTCCTTTGATGGAGA+TGG | - | tig0024875:34177-34196 | Msa1420860:intron | 50.0% | |
| TCCTCCTTTGATGGAGATGG+CGG | - | tig0024875:34180-34199 | Msa1420860:intron | 50.0% | |
| !! | TTTGATGGAGATGGCGGAGA+CGG | - | tig0024875:34186-34205 | Msa1420860:intron | 50.0% |
| GCTCTCTGGTGTATAGCTGA+TGG | + | tig0024875:34398-34417 | None:intergenic | 50.0% | |
| TACTAGTGAGTGGGAAGCGA+AGG | - | tig0024875:34456-34475 | Msa1420860:CDS | 50.0% | |
| GTACAAGTGATCGACGCTCT+AGG | + | tig0024875:35140-35159 | None:intergenic | 50.0% | |
| GTGATGCATCCGTTCGATGT+CGG | - | tig0024875:35369-35388 | Msa1420860:CDS | 50.0% | |
| CAACGATCACCGACATCGAA+CGG | + | tig0024875:35381-35400 | None:intergenic | 50.0% | |
| AAACGGAGGGATCAAATCCC+CGG | - | tig0024875:36004-36023 | Msa1420860:CDS | 50.0% | |
| GAACTTCTTGCGGCAGAAGA+TGG | + | tig0024875:36355-36374 | None:intergenic | 50.0% | |
| CTGCCGCAAGAAGTTCATCT+CGG | - | tig0024875:36359-36378 | Msa1420860:CDS | 50.0% | |
| GACCATACATGAAACCACGG+AGG | - | tig0024875:36398-36417 | Msa1420860:CDS | 50.0% | |
| CATCGCTGAAATTTCCTCGG+TGG | + | tig0024875:36428-36447 | None:intergenic | 50.0% | |
| AGGTTGCAGGTGCTTCTCCA+AGG | - | tig0024875:33483-33502 | Msa1420860:CDS | 55.0% | |
| GGTTGCAGGTGCTTCTCCAA+GGG | - | tig0024875:33484-33503 | Msa1420860:CDS | 55.0% | |
| TCCGCCATCTCCATCAAAGG+AGG | + | tig0024875:34184-34203 | None:intergenic | 55.0% | |
| GTCTCCGCCATCTCCATCAA+AGG | + | tig0024875:34187-34206 | None:intergenic | 55.0% | |
| GAGGGATCAAATCCCCGGAT+TGG | - | tig0024875:36009-36028 | Msa1420860:CDS | 55.0% | |
| TGGAGAGTAGGCCTCAACAC+TGG | - | tig0024875:36159-36178 | Msa1420860:CDS | 55.0% | |
| ! | TGGTTTGGACGCCAGTGTTG+AGG | + | tig0024875:36173-36192 | None:intergenic | 55.0% |
| !! | ATGGAGATGGCGGAGACGGT+AGG | - | tig0024875:34190-34209 | Msa1420860:intron | 60.0% |
| ACCACGGAGGAAAACCACCG+AGG | - | tig0024875:36411-36430 | Msa1420860:CDS | 60.0% | |
| ! | TCCTCGGTGGTTTTCCTCCG+TGG | + | tig0024875:36415-36434 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024875 | gene | 33054 | 36609 | 33054 | ID=Msa1420860;Name=Msa1420860 |
| tig0024875 | mRNA | 33054 | 36609 | 33054 | ID=Msa1420860-mRNA-1;Parent=Msa1420860;Name=Msa1420860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|5|200|756 |
| tig0024875 | exon | 33054 | 33509 | 33054 | ID=Msa1420860-mRNA-1:exon:1759;Parent=Msa1420860-mRNA-1 |
| tig0024875 | exon | 33837 | 34039 | 33837 | ID=Msa1420860-mRNA-1:exon:1758;Parent=Msa1420860-mRNA-1 |
| tig0024875 | exon | 34244 | 34537 | 34244 | ID=Msa1420860-mRNA-1:exon:1757;Parent=Msa1420860-mRNA-1 |
| tig0024875 | exon | 34913 | 35036 | 34913 | ID=Msa1420860-mRNA-1:exon:1756;Parent=Msa1420860-mRNA-1 |
| tig0024875 | exon | 35139 | 36609 | 35139 | ID=Msa1420860-mRNA-1:exon:1755;Parent=Msa1420860-mRNA-1 |
| tig0024875 | five_prime_UTR | 36533 | 36609 | 36533 | ID=Msa1420860-mRNA-1:five_prime_utr;Parent=Msa1420860-mRNA-1 |
| tig0024875 | CDS | 35139 | 36532 | 35139 | ID=Msa1420860-mRNA-1:cds;Parent=Msa1420860-mRNA-1 |
| tig0024875 | CDS | 34913 | 35036 | 34913 | ID=Msa1420860-mRNA-1:cds;Parent=Msa1420860-mRNA-1 |
| tig0024875 | CDS | 34244 | 34537 | 34244 | ID=Msa1420860-mRNA-1:cds;Parent=Msa1420860-mRNA-1 |
| tig0024875 | CDS | 33837 | 34039 | 33837 | ID=Msa1420860-mRNA-1:cds;Parent=Msa1420860-mRNA-1 |
| tig0024875 | CDS | 33254 | 33509 | 33254 | ID=Msa1420860-mRNA-1:cds;Parent=Msa1420860-mRNA-1 |
| tig0024875 | three_prime_UTR | 33054 | 33253 | 33054 | ID=Msa1420860-mRNA-1:three_prime_utr;Parent=Msa1420860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
