Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09720.t1 | XP_003611376.1 | 77.8 | 126 | 20 | 3 | 1 | 123 | 1 | 121 | 6.20E-29 | 137.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09720.t1 | B7FKU8 | 77.8 | 126 | 20 | 3 | 1 | 123 | 1 | 121 | 4.5e-29 | 137.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene09720 | 0.805716 | 1.17E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene09720 | 0.899859 | 1.30E-77 | -1.69E-46 |
| MS.gene049173 | MS.gene09720 | 0.872723 | 2.55E-67 | -1.69E-46 |
| MS.gene049217 | MS.gene09720 | 0.90785 | 3.24E-81 | -1.69E-46 |
| MS.gene049222 | MS.gene09720 | 0.912708 | 1.43E-83 | -1.69E-46 |
| MS.gene049232 | MS.gene09720 | 0.860175 | 2.48E-63 | -1.69E-46 |
| MS.gene049285 | MS.gene09720 | 0.939506 | 1.13E-99 | -1.69E-46 |
| MS.gene049320 | MS.gene09720 | 0.937364 | 3.90E-98 | -1.69E-46 |
| MS.gene04938 | MS.gene09720 | 0.800952 | 1.13E-48 | -1.69E-46 |
| MS.gene04939 | MS.gene09720 | 0.858979 | 5.68E-63 | -1.69E-46 |
| MS.gene049427 | MS.gene09720 | 0.82958 | 4.75E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene09720 | 0.836369 | 9.75E-57 | -1.69E-46 |
| MS.gene049615 | MS.gene09720 | 0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene049627 | MS.gene09720 | 0.87603 | 1.93E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene09720 | 0.862004 | 6.89E-64 | -1.69E-46 |
| MS.gene049805 | MS.gene09720 | 0.827239 | 1.75E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene09720 | 0.867988 | 9.12E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene09720 | 0.98008 | 2.11E-149 | -1.69E-46 |
| MS.gene050165 | MS.gene09720 | 0.978155 | 3.09E-145 | -1.69E-46 |
| MS.gene050170 | MS.gene09720 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene09720 | 0.809661 | 1.69E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene09720 | 0.8408 | 6.99E-58 | -1.69E-46 |
| MS.gene050333 | MS.gene09720 | 0.919026 | 7.53E-87 | -1.69E-46 |
| MS.gene050353 | MS.gene09720 | -0.802358 | 5.83E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene09720 | 0.855031 | 8.28E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene09720 | 0.831997 | 1.21E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene09720 | 0.935428 | 8.62E-97 | -1.69E-46 |
| MS.gene050518 | MS.gene09720 | 0.941533 | 3.52E-101 | -1.69E-46 |
| MS.gene050538 | MS.gene09720 | 0.817634 | 2.98E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene09720 | 0.898339 | 5.84E-77 | -1.69E-46 |
| MS.gene050612 | MS.gene09720 | 0.935236 | 1.16E-96 | -1.69E-46 |
| MS.gene050675 | MS.gene09720 | 0.897494 | 1.33E-76 | -1.69E-46 |
| MS.gene050699 | MS.gene09720 | 0.911279 | 7.28E-83 | -1.69E-46 |
| MS.gene050747 | MS.gene09720 | 0.840127 | 1.05E-57 | -1.69E-46 |
| MS.gene050767 | MS.gene09720 | 0.816154 | 6.40E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene09720 | 0.81729 | 3.56E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene09720 | 0.876468 | 1.36E-68 | -1.69E-46 |
| MS.gene050781 | MS.gene09720 | 0.81976 | 9.80E-53 | -1.69E-46 |
| MS.gene05079 | MS.gene09720 | -0.80335 | 3.63E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene09720 | 0.848385 | 6.34E-60 | -1.69E-46 |
| MS.gene050832 | MS.gene09720 | -0.81497 | 1.17E-51 | -1.69E-46 |
| MS.gene050833 | MS.gene09720 | -0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene09720 | 0.839869 | 1.22E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene09720 | 0.837713 | 4.42E-57 | -1.69E-46 |
| MS.gene050876 | MS.gene09720 | 0.900648 | 5.94E-78 | -1.69E-46 |
| MS.gene05087 | MS.gene09720 | 0.864486 | 1.17E-64 | -1.69E-46 |
| MS.gene050904 | MS.gene09720 | 0.867901 | 9.73E-66 | -1.69E-46 |
| MS.gene050950 | MS.gene09720 | 0.840026 | 1.11E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene09720 | 0.919716 | 3.18E-87 | -1.69E-46 |
| MS.gene05100 | MS.gene09720 | 0.929493 | 6.42E-93 | -1.69E-46 |
| MS.gene051127 | MS.gene09720 | -0.803605 | 3.22E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene09720 | -0.805363 | 1.38E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene09720 | 0.84613 | 2.63E-59 | -1.69E-46 |
| MS.gene051268 | MS.gene09720 | 0.808205 | 3.47E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene09720 | 0.876918 | 9.52E-69 | -1.69E-46 |
| MS.gene051551 | MS.gene09720 | 0.882473 | 1.01E-70 | -1.69E-46 |
| MS.gene051564 | MS.gene09720 | 0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene09720 | 0.832952 | 7.05E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene09720 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene09720 | 0.918644 | 1.21E-86 | -1.69E-46 |
| MS.gene051858 | MS.gene09720 | 0.841408 | 4.84E-58 | -1.69E-46 |
| MS.gene051949 | MS.gene09720 | 0.893287 | 7.23E-75 | -1.69E-46 |
| MS.gene052164 | MS.gene09720 | 0.87332 | 1.61E-67 | -1.69E-46 |
| MS.gene052271 | MS.gene09720 | 0.882341 | 1.13E-70 | -1.69E-46 |
| MS.gene052379 | MS.gene09720 | 0.862997 | 3.41E-64 | -1.69E-46 |
| MS.gene052482 | MS.gene09720 | 0.86419 | 1.45E-64 | -1.69E-46 |
| MS.gene052486 | MS.gene09720 | 0.872115 | 4.07E-67 | -1.69E-46 |
| MS.gene052503 | MS.gene09720 | 0.815652 | 8.28E-52 | -1.69E-46 |
| MS.gene052605 | MS.gene09720 | 0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene09720 | 0.846637 | 1.92E-59 | -1.69E-46 |
| MS.gene052670 | MS.gene09720 | 0.846338 | 2.31E-59 | -1.69E-46 |
| MS.gene052822 | MS.gene09720 | 0.811992 | 5.30E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene09720 | 0.810582 | 1.07E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene09720 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene09720 | 0.800094 | 1.69E-48 | -1.69E-46 |
| MS.gene052872 | MS.gene09720 | 0.819818 | 9.51E-53 | -1.69E-46 |
| MS.gene052916 | MS.gene09720 | 0.856519 | 3.05E-62 | -1.69E-46 |
| MS.gene052966 | MS.gene09720 | 0.837215 | 5.93E-57 | -1.69E-46 |
| MS.gene053009 | MS.gene09720 | 0.843229 | 1.59E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene09720 | 0.854838 | 9.43E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene09720 | 0.834667 | 2.62E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene09720 | 0.901626 | 2.22E-78 | -1.69E-46 |
| MS.gene053284 | MS.gene09720 | 0.829024 | 6.49E-55 | -1.69E-46 |
| MS.gene053285 | MS.gene09720 | 0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene09720 | 0.903154 | 4.65E-79 | -1.69E-46 |
| MS.gene053322 | MS.gene09720 | 0.849686 | 2.76E-60 | -1.69E-46 |
| MS.gene053420 | MS.gene09720 | -0.818956 | 1.50E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene09720 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene09720 | 0.808048 | 3.75E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene09720 | 0.844918 | 5.61E-59 | -1.69E-46 |
| MS.gene053626 | MS.gene09720 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene09720 | 0.884049 | 2.67E-71 | -1.69E-46 |
| MS.gene053824 | MS.gene09720 | 0.826828 | 2.19E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene09720 | 0.831953 | 1.25E-55 | -1.69E-46 |
| MS.gene054374 | MS.gene09720 | 0.845162 | 4.82E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene09720 | 0.828573 | 8.34E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene09720 | 0.851371 | 9.27E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene09720 | 0.883245 | 5.28E-71 | -1.69E-46 |
| MS.gene054616 | MS.gene09720 | -0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene09720 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene09720 | 0.931593 | 3.00E-94 | -1.69E-46 |
| MS.gene05470 | MS.gene09720 | 0.899391 | 2.08E-77 | -1.69E-46 |
| MS.gene054954 | MS.gene09720 | 0.931868 | 2.00E-94 | -1.69E-46 |
| MS.gene05505 | MS.gene09720 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene09720 | -0.826203 | 3.09E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene09720 | 0.826478 | 2.65E-54 | -1.69E-46 |
| MS.gene055212 | MS.gene09720 | 0.821886 | 3.18E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene09720 | 0.925882 | 1.00E-90 | -1.69E-46 |
| MS.gene055397 | MS.gene09720 | 0.876614 | 1.21E-68 | -1.69E-46 |
| MS.gene055499 | MS.gene09720 | 0.873883 | 1.04E-67 | -1.69E-46 |
| MS.gene055502 | MS.gene09720 | 0.90434 | 1.36E-79 | -1.69E-46 |
| MS.gene055577 | MS.gene09720 | 0.888591 | 5.16E-73 | -1.69E-46 |
| MS.gene055634 | MS.gene09720 | 0.851864 | 6.72E-61 | -1.69E-46 |
| MS.gene055636 | MS.gene09720 | 0.826049 | 3.36E-54 | -1.69E-46 |
| MS.gene055638 | MS.gene09720 | 0.851521 | 8.41E-61 | -1.69E-46 |
| MS.gene055647 | MS.gene09720 | 0.839889 | 1.21E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene09720 | 0.841395 | 4.88E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene09720 | 0.897827 | 9.64E-77 | -1.69E-46 |
| MS.gene055750 | MS.gene09720 | 0.881355 | 2.57E-70 | -1.69E-46 |
| MS.gene055751 | MS.gene09720 | 0.90561 | 3.58E-80 | -1.69E-46 |
| MS.gene055776 | MS.gene09720 | 0.882394 | 1.08E-70 | -1.69E-46 |
| MS.gene055849 | MS.gene09720 | 0.852976 | 3.24E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene09720 | 0.853093 | 3.00E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene09720 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene09720 | 0.855845 | 4.80E-62 | -1.69E-46 |
| MS.gene055956 | MS.gene09720 | -0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene056083 | MS.gene09720 | 0.868807 | 4.96E-66 | -1.69E-46 |
| MS.gene056374 | MS.gene09720 | 0.888484 | 5.67E-73 | -1.69E-46 |
| MS.gene056409 | MS.gene09720 | 0.839176 | 1.85E-57 | -1.69E-46 |
| MS.gene056449 | MS.gene09720 | 0.839616 | 1.42E-57 | -1.69E-46 |
| MS.gene056450 | MS.gene09720 | 0.833091 | 6.51E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene09720 | 0.883452 | 4.43E-71 | -1.69E-46 |
| MS.gene056510 | MS.gene09720 | 0.89526 | 1.13E-75 | -1.69E-46 |
| MS.gene056549 | MS.gene09720 | 0.870862 | 1.06E-66 | -1.69E-46 |
| MS.gene056550 | MS.gene09720 | -0.834879 | 2.32E-56 | -1.69E-46 |
| MS.gene056610 | MS.gene09720 | 0.835366 | 1.75E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene09720 | 0.933599 | 1.47E-95 | -1.69E-46 |
| MS.gene056692 | MS.gene09720 | 0.904063 | 1.81E-79 | -1.69E-46 |
| MS.gene056856 | MS.gene09720 | -0.800206 | 1.61E-48 | -1.69E-46 |
| MS.gene056898 | MS.gene09720 | 0.83771 | 4.43E-57 | -1.69E-46 |
| MS.gene057076 | MS.gene09720 | 0.80432 | 2.29E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene09720 | 0.880552 | 5.00E-70 | -1.69E-46 |
| MS.gene057246 | MS.gene09720 | 0.859612 | 3.67E-63 | -1.69E-46 |
| MS.gene057331 | MS.gene09720 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene09720 | 0.868482 | 6.32E-66 | -1.69E-46 |
| MS.gene05753 | MS.gene09720 | 0.809848 | 1.54E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene09720 | 0.836134 | 1.12E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene09720 | 0.896425 | 3.74E-76 | -1.69E-46 |
| MS.gene057926 | MS.gene09720 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene09720 | 0.836181 | 1.09E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene09720 | 0.828447 | 8.94E-55 | -1.69E-46 |
| MS.gene058269 | MS.gene09720 | -0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene058323 | MS.gene09720 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene09720 | -0.839952 | 1.16E-57 | -1.69E-46 |
| MS.gene058335 | MS.gene09720 | 0.821449 | 4.01E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene09720 | 0.807672 | 4.51E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene09720 | 0.824383 | 8.32E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene09720 | 0.92904 | 1.23E-92 | -1.69E-46 |
| MS.gene058544 | MS.gene09720 | 0.875145 | 3.88E-68 | -1.69E-46 |
| MS.gene058719 | MS.gene09720 | 0.867019 | 1.86E-65 | -1.69E-46 |
| MS.gene058723 | MS.gene09720 | 0.880619 | 4.73E-70 | -1.69E-46 |
| MS.gene058773 | MS.gene09720 | 0.898683 | 4.17E-77 | -1.69E-46 |
| MS.gene058838 | MS.gene09720 | 0.833446 | 5.31E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene09720 | 0.814342 | 1.62E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene09720 | 0.92952 | 6.18E-93 | -1.69E-46 |
| MS.gene059023 | MS.gene09720 | 0.872551 | 2.92E-67 | -1.69E-46 |
| MS.gene059029 | MS.gene09720 | 0.881282 | 2.73E-70 | -1.69E-46 |
| MS.gene059079 | MS.gene09720 | 0.863635 | 2.16E-64 | -1.69E-46 |
| MS.gene059102 | MS.gene09720 | -0.835902 | 1.28E-56 | -1.69E-46 |
| MS.gene05912 | MS.gene09720 | 0.866156 | 3.50E-65 | -1.69E-46 |
| MS.gene05913 | MS.gene09720 | 0.844961 | 5.46E-59 | -1.69E-46 |
| MS.gene05914 | MS.gene09720 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene09720 | 0.84694 | 1.58E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene09720 | 0.800835 | 1.20E-48 | -1.69E-46 |
| MS.gene059479 | MS.gene09720 | -0.812728 | 3.66E-51 | -1.69E-46 |
| MS.gene059526 | MS.gene09720 | -0.802033 | 6.80E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene09720 | 0.834358 | 3.14E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene09720 | 0.952622 | 1.63E-110 | -1.69E-46 |
| MS.gene059718 | MS.gene09720 | 0.907232 | 6.33E-81 | -1.69E-46 |
| MS.gene059756 | MS.gene09720 | 0.874386 | 7.04E-68 | -1.69E-46 |
| MS.gene059801 | MS.gene09720 | 0.840641 | 7.69E-58 | -1.69E-46 |
| MS.gene059837 | MS.gene09720 | 0.806297 | 8.81E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene09720 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene09720 | 0.900978 | 4.26E-78 | -1.69E-46 |
| MS.gene059902 | MS.gene09720 | 0.837942 | 3.86E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene09720 | 0.858447 | 8.19E-63 | -1.69E-46 |
| MS.gene06000 | MS.gene09720 | 0.812887 | 3.38E-51 | -1.69E-46 |
| MS.gene060193 | MS.gene09720 | 0.804773 | 1.84E-49 | -1.69E-46 |
| MS.gene060337 | MS.gene09720 | -0.836512 | 8.96E-57 | -1.69E-46 |
| MS.gene060341 | MS.gene09720 | 0.816508 | 5.33E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene09720 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene060526 | MS.gene09720 | 0.810269 | 1.25E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene09720 | 0.90906 | 8.65E-82 | -1.69E-46 |
| MS.gene060728 | MS.gene09720 | 0.836662 | 8.21E-57 | -1.69E-46 |
| MS.gene060762 | MS.gene09720 | 0.910755 | 1.31E-82 | -1.69E-46 |
| MS.gene060778 | MS.gene09720 | 0.835371 | 1.74E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene09720 | 0.902713 | 7.31E-79 | -1.69E-46 |
| MS.gene060823 | MS.gene09720 | -0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene09720 | 0.845396 | 4.17E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene09720 | 0.880082 | 7.36E-70 | -1.69E-46 |
| MS.gene06105 | MS.gene09720 | 0.844258 | 8.45E-59 | -1.69E-46 |
| MS.gene061134 | MS.gene09720 | 0.8403 | 9.45E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene09720 | 0.911169 | 8.24E-83 | -1.69E-46 |
| MS.gene061171 | MS.gene09720 | 0.852539 | 4.32E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene09720 | 0.871993 | 4.47E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09720.t1 | MTR_5g013300 | 75.781 | 128 | 23 | 3 | 1 | 125 | 1 | 123 | 9.25e-62 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCGACCTCAATTTCA+TGG | 0.303030 | 5.3:+6371141 | MS.gene09720:CDS |
| AACTGAAGGAGAACAGGTTT+TGG | 0.311686 | 5.3:+6371286 | MS.gene09720:CDS |
| GGCTTCCCAAGTATTTCTTC+AGG | 0.325939 | 5.3:+6370899 | MS.gene09720:CDS |
| GTAACTTACCCTTCATTTCC+AGG | 0.329154 | 5.3:+6371117 | MS.gene09720:CDS |
| TGTTAAGCTTGGTGATGTTA+TGG | 0.331706 | 5.3:+6371355 | MS.gene09720:CDS |
| ATTTGAAACAGCCTCGGAAT+TGG | 0.345574 | 5.3:-6371216 | None:intergenic |
| GAAGAGAAACCTAGCTTTGT+TGG | 0.359069 | 5.3:-6371065 | None:intergenic |
| GTTAAGCTTGGTGATGTTAT+GGG | 0.359187 | 5.3:+6371356 | MS.gene09720:CDS |
| TCAGCATTATCCGAAGCTTC+AGG | 0.367212 | 5.3:-6371251 | None:intergenic |
| TTTGTTGGAGGACATTGATT+AGG | 0.374475 | 5.3:-6371050 | None:intergenic |
| GGATAATGCTGATGAAGTTT+CGG | 0.394551 | 5.3:+6371262 | MS.gene09720:CDS |
| TTCGGAAACTGAAGGAGAAC+AGG | 0.400877 | 5.3:+6371280 | MS.gene09720:CDS |
| CGAAGAAGCCCTGGAAATGA+AGG | 0.478400 | 5.3:-6371126 | None:intergenic |
| TGATGAAAATCCTGAAGCTT+CGG | 0.493188 | 5.3:+6371241 | MS.gene09720:CDS |
| ACGAGTTTGTCTAGGCGGCT+TGG | 0.497233 | 5.3:-6371333 | None:intergenic |
| CAATGTCCTCCAACAAAGCT+AGG | 0.507926 | 5.3:+6371056 | MS.gene09720:CDS |
| TTTGGATTCTGCATCTGAGG+TGG | 0.512535 | 5.3:+6371304 | MS.gene09720:CDS |
| ATCAACATTTGAAACAGCCT+CGG | 0.532181 | 5.3:-6371222 | None:intergenic |
| GGATTCTGCATCTGAGGTGG+AGG | 0.532596 | 5.3:+6371307 | MS.gene09720:CDS |
| ACGAGAAGCGATGGTGGAAG+CGG | 0.542669 | 5.3:-6371096 | None:intergenic |
| TAACTTACCCTTCATTTCCA+GGG | 0.543085 | 5.3:+6371118 | MS.gene09720:CDS |
| TTAAGCTTGGTGATGTTATG+GGG | 0.548890 | 5.3:+6371357 | MS.gene09720:CDS |
| AATTGAGGTCGAAGAAGCCC+TGG | 0.553413 | 5.3:-6371135 | None:intergenic |
| ATTACAGCGCCATGAAATTG+AGG | 0.558367 | 5.3:-6371150 | None:intergenic |
| GAGAAACCTAGCTTTGTTGG+AGG | 0.558664 | 5.3:-6371062 | None:intergenic |
| TCAGCTCTCACAATAAAACT+AGG | 0.565579 | 5.3:-6371191 | None:intergenic |
| AGACAAACTCGTGTTAAGCT+TGG | 0.574922 | 5.3:+6371344 | MS.gene09720:CDS |
| AGCTTAACACGAGTTTGTCT+AGG | 0.586483 | 5.3:-6371341 | None:intergenic |
| TTAATAACAGTATAGAGTCA+TGG | 0.599601 | 5.3:-6371394 | None:intergenic |
| GGGTAAGTTACGAGAAGCGA+TGG | 0.599796 | 5.3:-6371105 | None:intergenic |
| AAACTAGGTTTAGCAATGAG+AGG | 0.610020 | 5.3:-6371176 | None:intergenic |
| GATGAAGTTTCGGAAACTGA+AGG | 0.614399 | 5.3:+6371272 | MS.gene09720:CDS |
| GAGAGCTGATTCCAATTCCG+AGG | 0.627170 | 5.3:+6371205 | MS.gene09720:CDS |
| TAAGTTACGAGAAGCGATGG+TGG | 0.627813 | 5.3:-6371102 | None:intergenic |
| CTAGGTTTAGCAATGAGAGG+AGG | 0.642127 | 5.3:-6371173 | None:intergenic |
| TTAACACGAGTTTGTCTAGG+CGG | 0.648787 | 5.3:-6371338 | None:intergenic |
| TAAGCTTGGTGATGTTATGG+GGG | 0.663709 | 5.3:+6371358 | MS.gene09720:CDS |
| GAAGAAGCCCTGGAAATGAA+GGG | 0.680632 | 5.3:-6371125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATTTGTTACAATGAAT+TGG | - | chr5.3:6370961-6370980 | None:intergenic | 20.0% |
| ! | AAAAAACCTGAAGAAATACT+TGG | - | chr5.3:6370908-6370927 | None:intergenic | 25.0% |
| ! | AAAAACCTGAAGAAATACTT+GGG | - | chr5.3:6370907-6370926 | None:intergenic | 25.0% |
| ! | TTAATAACAGTATAGAGTCA+TGG | - | chr5.3:6371397-6371416 | None:intergenic | 25.0% |
| TGGATAATAATGAGATGAGA+GGG | - | chr5.3:6370941-6370960 | None:intergenic | 30.0% | |
| TTGGATAATAATGAGATGAG+AGG | - | chr5.3:6370942-6370961 | None:intergenic | 30.0% | |
| AAACTAGGTTTAGCAATGAG+AGG | - | chr5.3:6371179-6371198 | None:intergenic | 35.0% | |
| GGATAATGCTGATGAAGTTT+CGG | + | chr5.3:6371262-6371281 | MS.gene09720:CDS | 35.0% | |
| TAACTTACCCTTCATTTCCA+GGG | + | chr5.3:6371118-6371137 | MS.gene09720:CDS | 35.0% | |
| TCAGCTCTCACAATAAAACT+AGG | - | chr5.3:6371194-6371213 | None:intergenic | 35.0% | |
| TGATGAAAATCCTGAAGCTT+CGG | + | chr5.3:6371241-6371260 | MS.gene09720:CDS | 35.0% | |
| ! | ATCAACATTTGAAACAGCCT+CGG | - | chr5.3:6371225-6371244 | None:intergenic | 35.0% |
| ! | TTTGTTGGAGGACATTGATT+AGG | - | chr5.3:6371053-6371072 | None:intergenic | 35.0% |
| !! | GTTAAGCTTGGTGATGTTAT+GGG | + | chr5.3:6371356-6371375 | MS.gene09720:CDS | 35.0% |
| !! | TGTTAAGCTTGGTGATGTTA+TGG | + | chr5.3:6371355-6371374 | MS.gene09720:CDS | 35.0% |
| !! | TTAAGCTTGGTGATGTTATG+GGG | + | chr5.3:6371357-6371376 | MS.gene09720:CDS | 35.0% |
| AGACAAACTCGTGTTAAGCT+TGG | + | chr5.3:6371344-6371363 | MS.gene09720:CDS | 40.0% | |
| AGCTTAACACGAGTTTGTCT+AGG | - | chr5.3:6371344-6371363 | None:intergenic | 40.0% | |
| ATTACAGCGCCATGAAATTG+AGG | - | chr5.3:6371153-6371172 | None:intergenic | 40.0% | |
| CTTCTTCGACCTCAATTTCA+TGG | + | chr5.3:6371141-6371160 | MS.gene09720:CDS | 40.0% | |
| GATGAAGTTTCGGAAACTGA+AGG | + | chr5.3:6371272-6371291 | MS.gene09720:CDS | 40.0% | |
| GTAACTTACCCTTCATTTCC+AGG | + | chr5.3:6371117-6371136 | MS.gene09720:CDS | 40.0% | |
| TTAACACGAGTTTGTCTAGG+CGG | - | chr5.3:6371341-6371360 | None:intergenic | 40.0% | |
| ! | AACTGAAGGAGAACAGGTTT+TGG | + | chr5.3:6371286-6371305 | MS.gene09720:CDS | 40.0% |
| ! | ATTTGAAACAGCCTCGGAAT+TGG | - | chr5.3:6371219-6371238 | None:intergenic | 40.0% |
| !! | GAAGAGAAACCTAGCTTTGT+TGG | - | chr5.3:6371068-6371087 | None:intergenic | 40.0% |
| !! | TAAGCTTGGTGATGTTATGG+GGG | + | chr5.3:6371358-6371377 | MS.gene09720:CDS | 40.0% |
| CAATGTCCTCCAACAAAGCT+AGG | + | chr5.3:6371056-6371075 | MS.gene09720:CDS | 45.0% | |
| CTAGGTTTAGCAATGAGAGG+AGG | - | chr5.3:6371176-6371195 | None:intergenic | 45.0% | |
| GAAGAAGCCCTGGAAATGAA+GGG | - | chr5.3:6371128-6371147 | None:intergenic | 45.0% | |
| GGCTTCCCAAGTATTTCTTC+AGG | + | chr5.3:6370899-6370918 | MS.gene09720:CDS | 45.0% | |
| TAAGTTACGAGAAGCGATGG+TGG | - | chr5.3:6371105-6371124 | None:intergenic | 45.0% | |
| TCAGCATTATCCGAAGCTTC+AGG | - | chr5.3:6371254-6371273 | None:intergenic | 45.0% | |
| TTCGGAAACTGAAGGAGAAC+AGG | + | chr5.3:6371280-6371299 | MS.gene09720:CDS | 45.0% | |
| TTTGGATTCTGCATCTGAGG+TGG | + | chr5.3:6371304-6371323 | MS.gene09720:CDS | 45.0% | |
| !! | GAGAAACCTAGCTTTGTTGG+AGG | - | chr5.3:6371065-6371084 | None:intergenic | 45.0% |
| !!! | GGTTTTGGATTCTGCATCTG+AGG | + | chr5.3:6371301-6371320 | MS.gene09720:CDS | 45.0% |
| AATTGAGGTCGAAGAAGCCC+TGG | - | chr5.3:6371138-6371157 | None:intergenic | 50.0% | |
| CGAAGAAGCCCTGGAAATGA+AGG | - | chr5.3:6371129-6371148 | None:intergenic | 50.0% | |
| GGGTAAGTTACGAGAAGCGA+TGG | - | chr5.3:6371108-6371127 | None:intergenic | 50.0% | |
| ! | GAGAGCTGATTCCAATTCCG+AGG | + | chr5.3:6371205-6371224 | MS.gene09720:CDS | 50.0% |
| ACGAGTTTGTCTAGGCGGCT+TGG | - | chr5.3:6371336-6371355 | None:intergenic | 55.0% | |
| ! | GGATTCTGCATCTGAGGTGG+AGG | + | chr5.3:6371307-6371326 | MS.gene09720:CDS | 55.0% |
| !! | ACGAGAAGCGATGGTGGAAG+CGG | - | chr5.3:6371099-6371118 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6370897 | 6371439 | 6370897 | ID=MS.gene09720 |
| chr5.3 | mRNA | 6370897 | 6371439 | 6370897 | ID=MS.gene09720.t1;Parent=MS.gene09720 |
| chr5.3 | exon | 6370897 | 6370920 | 6370897 | ID=MS.gene09720.t1.exon1;Parent=MS.gene09720.t1 |
| chr5.3 | CDS | 6370897 | 6370920 | 6370897 | ID=cds.MS.gene09720.t1;Parent=MS.gene09720.t1 |
| chr5.3 | exon | 6371038 | 6371439 | 6371038 | ID=MS.gene09720.t1.exon2;Parent=MS.gene09720.t1 |
| chr5.3 | CDS | 6371038 | 6371439 | 6371038 | ID=cds.MS.gene09720.t1;Parent=MS.gene09720.t1 |
| Gene Sequence |
| Protein sequence |
