AlfalfaGEDB | MS.gene97937

M. sativa cultivar XinJiangDaYe / MS.gene97937

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01985.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97937.t1	XP_013446181.1	90.5	578	11	3	1	538	1	574	2.10E-274	954.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97937.t1	Q9LDA9	65.7	496	145	6	65	537	71	564	5.1e-189	662.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97937.t1	A0A072TTL7	90.5	578	11	3	1	538	1	574	1.5e-274	954.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene97937	0.825388	4.82E-54	-1.69E-46
MS.gene049171	MS.gene97937	0.891053	5.64E-74	-1.69E-46
MS.gene049173	MS.gene97937	0.839	2.06E-57	-1.69E-46
MS.gene049217	MS.gene97937	0.888143	7.67E-73	-1.69E-46
MS.gene049222	MS.gene97937	0.913485	5.82E-84	-1.69E-46
MS.gene049232	MS.gene97937	0.862129	6.31E-64	-1.69E-46
MS.gene049285	MS.gene97937	0.91076	1.31E-82	-1.69E-46
MS.gene049320	MS.gene97937	0.89202	2.33E-74	-1.69E-46
MS.gene04939	MS.gene97937	0.843485	1.36E-58	-1.69E-46
MS.gene049427	MS.gene97937	0.8136	2.36E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97937.t1	MTR_8g069825	90.830	578	9	3	1	538	1	574	0.0	1042
MS.gene97937.t1	MTR_8g102850	49.402	502	218	10	30	511	12	497	1.32e-153	454
MS.gene97937.t1	MTR_8g102850	49.393	494	215	9	30	503	12	490	1.57e-152	453
MS.gene97937.t1	MTR_7g075885	42.818	362	171	6	48	405	40	369	1.37e-88	278
MS.gene97937.t1	MTR_0194s0020	43.854	301	133	6	106	401	54	323	6.80e-81	256
MS.gene97937.t1	MTR_0194s0020	42.349	281	126	6	106	381	54	303	3.50e-69	225
MS.gene97937.t1	MTR_0194s0020	42.500	240	102	6	106	340	54	262	2.13e-55	187
MS.gene97937.t1	MTR_7g039560	58.730	63	19	1	337	399	52	107	2.82e-15	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97937.t1	AT1G23400	62.791	559	166	8	16	537	11	564	0.0	680
MS.gene97937.t1	AT2G20020	58.808	369	137	4	69	426	102	466	5.45e-151	449
MS.gene97937.t1	AT4G31010	45.687	313	146	5	97	405	75	367	3.67e-87	275
MS.gene97937.t1	AT4G31010	44.688	320	146	6	97	405	75	374	3.67e-84	267
MS.gene97937.t1	AT5G54890	41.503	306	145	6	101	402	73	348	2.68e-78	250

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Find 186 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATTCATCGAGCTGG+CGG	0.598507	8.4:+33663371	MS.gene97937:CDS
AAATCAACTGGTAGCGATCC+AGG	0.435156	8.4:-33666388	None:intergenic
AACGGTGCTTTCCCTGTCCA+CGG	0.517992	8.4:-33660532	None:intergenic
AAGCTGAAGCAGATGAATTA+AGG	0.343513	8.4:+33663522	MS.gene97937:CDS
AATGCTTGTTAAGCCTATGA+TGG	0.616220	8.4:+33660729	MS.gene97937:CDS
AATGGGGATAGGCGGACGTG+GGG	0.497008	8.4:-33660224	None:intergenic
AATTTCAAACCTCAATATGG+CGG	0.689711	8.4:-33661536	None:intergenic
ACAAGGGATTTAGAAAATAA+AGG	0.326497	8.4:+33665199	MS.gene97937:CDS
ACAATGCCGAGGCCGTGGAC+AGG	0.457243	8.4:+33660520	MS.gene97937:CDS
ACACCTTTCATCCCTTCCGG+AGG	0.653893	8.4:-33660601	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTTTATACTGTCATGAC+AGG	+	chr8.4:33663334-33663353	MS.gene97937:intron	30.0%
AATTTCAAACCTCAATATGG+CGG	-	chr8.4:33661539-33661558	None:intergenic	30.0%
ACATACAATGACAATTGTTC+GGG	+	chr8.4:33665669-33665688	MS.gene97937:intron	30.0%
ACCAATTTCAAACCTCAATA+TGG	-	chr8.4:33661542-33661561	None:intergenic	30.0%
ACCCAGATAGAAAGAATTAA+AGG	-	chr8.4:33663174-33663193	None:intergenic	30.0%
AGTATACACAACACTTGTAA+AGG	+	chr8.4:33664171-33664190	MS.gene97937:CDS	30.0%
AGTCCAATAAACCATCTATT+AGG	-	chr8.4:33662564-33662583	None:intergenic	30.0%
ATGTTTATATGAAGGATGGT+TGG	-	chr8.4:33661949-33661968	None:intergenic	30.0%
CAACGAAATCTATATCTGTT+AGG	-	chr8.4:33663218-33663237	None:intergenic	30.0%
CACTTGCATAATATCATTCT+TGG	+	chr8.4:33661608-33661627	MS.gene97937:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	33660115	33666447	33660115	ID=MS.gene97937
chr8.4	mRNA	33660115	33666447	33660115	ID=MS.gene97937.t1;Parent=MS.gene97937
chr8.4	exon	33660115	33660775	33660115	ID=MS.gene97937.t1.exon1;Parent=MS.gene97937.t1
chr8.4	CDS	33660115	33660775	33660115	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33661421	33661548	33661421	ID=MS.gene97937.t1.exon2;Parent=MS.gene97937.t1
chr8.4	CDS	33661421	33661548	33661421	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33663356	33663581	33663356	ID=MS.gene97937.t1.exon3;Parent=MS.gene97937.t1
chr8.4	CDS	33663356	33663581	33663356	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33664161	33664288	33664161	ID=MS.gene97937.t1.exon4;Parent=MS.gene97937.t1
chr8.4	CDS	33664161	33664288	33664161	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33665079	33665220	33665079	ID=MS.gene97937.t1.exon5;Parent=MS.gene97937.t1
chr8.4	CDS	33665079	33665220	33665079	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33665996	33666250	33665996	ID=MS.gene97937.t1.exon6;Parent=MS.gene97937.t1
chr8.4	CDS	33665996	33666250	33665996	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1
chr8.4	exon	33666371	33666447	33666371	ID=MS.gene97937.t1.exon7;Parent=MS.gene97937.t1
chr8.4	CDS	33666371	33666447	33666371	ID=cds.MS.gene97937.t1;Parent=MS.gene97937.t1

Gene Sequence

>MS.gene97937

ATGGTGCTAGTTGCATTATCCTCTCCCCTCCCAGCTGGTAGGGGGAACCTCTTCTCCTCCTTACCACCCAACAACCCCTCATCTTCCTCCTCCTCATCCTCATCCGCCACCCCACGTCCGCCTATCCCCATTCCAAAATACCCCCCACCTCGCAAATCACACCCCCCACCACCACCAAACCCAAACCCCGCCCTCAAACACCACCGCAACTCCAAATATTACAAACCCATCACCCACCCCACTACCATCCCTTCCTCCGACAACCGCTCCGTCATCATCGGCGAATCCGGCGTCTCCTACCTTCTCCCTGGAGCTCCCTTCGAGTTTCAGTTCAGTTACTCCGAAACTCCAAAAGTGAAACCAATTGCTATCCGTGAACCGGCTTTTTTACCGTTTGAACCTCCCACAATGCCGAGGCCGTGGACAGGGAAAGCACCGTTGAAGAAGTCGAAGAAGAATATTCCACTGTTTGATTCGTTTAATCCTCCTCCGGAAGGGATGAAAGGTGTTAAGAAAGTTGAAATGCCGGGGCCGTTTCCGGTTGGGAAGTTTCCTGAAGAAGGGGTGAGTAGAGAGGAGATACTTGGTGAGCCGCTTAAGAAGTGGGAGGTGCAAATGCTTGTTAAGCCTATGATGGCCGATAATCGCCAAGTTAATCTCGGTGAGTTGGAATTTAAGGGTAGTTTTGTTTGCGATATTTGATATTGTTGAAAATTGTTGTCAAATGTAGCTGCCTATTATGCACGGACATTTCTGATTGATGGCATTAGAGGTAGGAAGCACTGACACAGACACAAACACGGGACTTGACACGGACACCTTGACACTAGGACTAACTTGAGAACATGACTGAATTGACTGTTATCACATTTTTCAGTGTTAGACACAGACAAATGTTGGATACCAGACGCACCTTCGATCAGAAGTCTCAATTGTTCAAAGCATTAGACACGCGTGATTACATTATGTTAATTCCATTTCTCAAATTATTATTGGTGTCTATGTGTCAATGTCGTGTTTCATGGATGTTAGTGTGGACTGTGGTTGCTTTATTGGTCAAAGCAGCTTAAATTGCAGCCGTGTGTTCTGTTTTTACAACATAAAAATCGCTATATAATGGCTCAGGTTGTGGTTGTAGAACTTTATTCAAAACCTTGGAACTAGTAAAGATCTCGTGCAAGTGCAAGTGCAAGATTGCACATGTCATTCTAGAATACCATTTTAGAATAGATAGATATATTGTGAATTGTGGAAGGTGAAGGGTTGGACTGTGTTAATGGTGTTTGGTTTTGATTTGATGGTGTAGGAAGGGATGGATTAACGCATAACATGTTGGAGTTGATACATTCACATTGGAAGCGACGTCGCGTCTGCAAAATTCGTTGTAAAGGTGTTCCTACCGTTGATATGGATAATGTTTGCCGCCATATTGAGGTTTGAAATTGGTTCATAATCTTGTTCACCTTGTTGTCATTTTGATACCAACATAACAACACTTGCATAATATCATTCTTGGCTGATTATAGATTGTGCACAACGGGTTATGATCTTAAAATGAAAATAATATTATGTCAACTAGTAGTTTGTGCTAAGACTGTTTTTAATGGATTCCTTCTGATGATCCTGTACAGAAAATCCTATTCATGCAAATGCATCAGGTTCCATCTTCGTAAGGCTTGGTAACAATATACCAACCCTTCACAAATGGATAATTGACCTTATTTCTTGAAGACAATGTAACCCCCTCTCATTCTGGATCTCTGCTTGAGAAAGACATTATTACTTCACTCAAAATCCTATAGTCTCAAACAACCAAAGCTCGAACTAGACACCAACCATCCTTCATATAAACATGCCTAACACTCCATATCATAACACAATGACTAACATCTATAAAATTACTGTCATCAACCATTATTTGATGGCACCGGAAAGTCCAATAATTTTAGTCATAAAAATGACTAAAATTACTGCCATCGACTACTTTGTAAAACTATGTAGGATAGTTGTGTATTTCGTCATGCAGGACAGAAATGTAATAGTTATGTATATAATCATGTCGAACAGTTTATAGCAATTTATCCGTAGTATATGACATAAGTAGGGGGCTAAGAGGTTCTTACGATGTGTATTCGGTAGTTCTGGACAGAGTATATTCTCTTTAGGATAGTTTCGGACAAAGTATATTCTCTGTAGGATTCATCAACTCTGGGACAGCATCTTTTCTGTAGTTTTTGTAATTTATATGTATAACTATAAATTATAATCAACATCCAATTTGGAAGGTATACTCCAGAAGGATGTACAGCATAGGATGTACAACTTTGTCAAACACCCACCATAACTACTTCCTAACCTCCTACTTACATCATAACTACATTACTGTCCAATGTCACTACCTCATAGCAGAGTTATACTTCCTACACGCCCGTCTGAAATATTTATTCCTAATAGATGGTTTATTGGACTTTCAAGTCTCGTCAGAGTACATGTCAGCCTTTACCAATCTTTCACTTTGACCATTCTTCCTAAAATCCGAATTCAGAGTCCAAGTCGGATTTGTAACATTGCACAACATTCACAAACCTTGACAGCATATGAAGTCATTTATTTAGATTTGAAAATGACAACCATTTTGTCCCAAGCACAAATACCCATTGCCTAAAAAAAGTATGCAAATTGTGGTCTTGGCAAAAAATGAACAAGAAACGGAGAGATTATCAAAATCCAAAGGGAAGAGGAATGGTTGGGAGATGATCAACAGGAAGTCTCTCAAAATGGGAATCCCCAAATTCCACTTTGAGGGCAAGGTGGAGCTTCAAGTTGAATGTATTGTTAGGGTATCTCATTTAAAGTCAAGCAAAGACATCTGGTTGTCTGTCAGTTCATTAGTTAGGTAAATAGTGGAAATCAGATTGGGGAGGGATCAACCCGTATAATTTATAGCTTGTGAGTGAAAGGAAAGATCCATTGTGAAGGAAAAAACCCTTGGGGGATTTTATTCCCCATTTTCTGTTTAGACTTTATAGTTCATTGTTCAATAGTACTACTCCCATCCTTTAATTCTTTCTATCTGGGTTTCAATCTCATTTTGTGAGTTCCTAACAGATATAGATTTCGTTGATGCTTTTACTTTTCTTTTTCTTCTCTTGAATCAATCACTGAGCCGTGCATGAAAGTTGATTGTTGCATATGATCACTTTTTTTGCTTTGAAGTTAAATGTTTATACTGTCATGACAGGAGAAAGCAGGGGGGAAAATAATTCATCGAGCTGGCGGTGTAGTTTATCTTTTCCGTGGCAGAAATTACAACTACCGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTATCCAAAACTTATACAAGATGCTCCAGAAGGATTAACGAAAGCTGAAGCAGATGAATTAAGGATGAAAGGGAAAAGCTTGTTGCCAATATGTAAATTAGGTAACCATCTATTAACTTTTAGATCTCTCTTTCTAATTTCGAGACTACACACTGCATGAAAAAATTTGAAAATTTGCCTAGAGTAATTGCAGTCGCAAGGTGAGGCTAGAGTTTCCTTAGATTCAAATATTAGGTTTAGTATTTAAAAGGGTTGGATGAATTACAATTTGATGCAATTAATAGCTGTCATTCTGGTAATATACATGTCATTAGACTTAAGTATCAAGCACCATTGCCCAAATAAAAAAATTTGACCATATGAGATGCTTTTGACTTCTTAAGGGGATTGTCAAGAAGGAACATCTCTTGGTTAGTAGAGTAAGATATTGAAAATAGAATATTCAATGCAAGTAAACCTGCAAAGATTTGAGTGCAGAATCTTAGTTGGAAGAAAGATAATCAAAATCATGTAAAATGGGCTTGTCATTATGTTTTTCATTTTTTTATTGATCTGCATATTTATTCCGTAAAGTACTCTTATAATGTTGATATTGCATTCTACTTTAGGGGTAATCACTTTTTTTTTTGTTGCTTTTATTTCTTAATTTGAACATCTCATTTATTTGTGTGGTGTTGCAGCCAAAAATGGAGTATACACAACACTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAGCCATTTGGTGAAGATTGACTGCAAGGGATTGGATCCCAGTGATTATAAGAAATTAGGTGCCAAGCTTAAGGTACTAGATAACTAGCTTTCTTCGTCTTCTTTTACATTGCTTCTTTTATCTTTACTCTTTTTGCCTGAACTAAATAATTTTGATATCTGTACTCTGTATTAAGTTAATAGAATTAATTCAAAGTGTAGAGGGAACCTACATTATGCTCAAAGGATGCAGAATAAATGTACATGCTTAGGCTTGGCAGCTGAAAACATTATGTTTAATCCAAGCGTTTGTTCTCTATCCAATATAAACATTAAATTTATTACATAAAGGGGGTTCTGTAGTTGATTAGTTTGGTACAAGCTAGCAAAGTTCATGTGAAGGGTATGATTGAGGATTCATCAGTTTGATTTTTTTCATGTTTTCATCTCTCTGGTTATGCTAAAAGTGATCATTAGCTCTATCTTTAAATTTCAAGGTACCCTTACCAAGGAATGATTATTTCACTATAAATTCTTCTGGTTTTCACTACCAAGATATATCATTTTCTATATGAGTGTTGAGACAACATTGTGTTACAGTGTTGTACACTGGCACGATAATTAGTCTGGTATCAGCCTACTTTTTGTTGTCAGGCTTTTCTATATTACAGCTCTAGGGAGGAGGGACTTGTTACAATTTATTACTACAACAAAATATGCTTTGGATTTTGTAATTGATATGTCTATATTGTTTCATAGAACATAATAAAACAGGTCATGTGCAGTGTATAGTAGCATGCATCGTGTTTGTATCCTTAAGTATTGCTGCAATTATTATCTAGTAGTATTATACGGCATGCAATTTGATCATTTTGCTTTGGCAGGATTTGGTTCCTTGTGTGCTATTGTCTTTCGATGATGAACAAGTACTGATTTGGAGGGGCAAAGATTGGAAATCAATGTACCCTCAAGCTCCAGTTTTTCCTCCTGCTGAAGCTACCATTACAAGGGATTTAGAAAATAAAGGTATGTGTTGGAGTAAGGAAAAAAAAATTGGTTGCATTGCATCATTTTTGTATTGAAAGTCTTGTCCGAATGGAATTCTTCTACAGTATACATACATATTAGTGTCTATATTGTGAAATATTCTTGGTGTAGATATAAATAAGTTATATTTTGTGTTTACAATAAGGTGATTATAAGCAATCTCGTATCTAGGTAAGAAATGGTTTGTGCTTAAAACAGAATAGGGGTTTAGAACATATTTGACGCATTTCTCAAGCTGATAATACAAAGTAAATTTTTATATATTTCTTTGTATGGATTTCTTCTATGGTGACCATGAATAGAAAGATTTATTCTAGAAATGCATTTGTGCATTGAGGTTTTGGTGAATTTTCTCGAGCTAGTTGAAAGTATAGATGGCTGAATTAGATTATAAGTGGCTGAATTAGATTATGAAGAGGCTGGTTATACATACAATGACAATTGTTCGGGAACCTTTATAATGTGATGATGGGGGGAAATGAGGAATAGAAGTTTCCCAGACAGGGAGTTGCAGTGAATGAAGTTTCCTCGAAATCTCTTCGACATAGGGAAGCTCTCTGGGAATTGATATATTCCCTCCAATGTCATAGATGATCATATATGATAGCCTATCTTTTTTTTTTTTGAAGGAATATATGATAGCCTATTTGTTTGTGTTATAATTGGTTTCTAATTCATATCATATCTGGTAAATATATAATTGGTTGATAACATTGGTTATGCAACATCATCATGATTTTACATTGTTAATCAGGTGAGGTGGATGATAATCAATCTAAGCACATCAGCGAAATGGTCAGCACAAGCCCAAAAATGTTATCTCTGTGGAAGAGTGCAATTGAGTCAAACAAAGCCTTATTGCTAGAAGAATTTAATATTGGTCCTGATGCTCTCTTGGAGAAGGTAGAAGAATTTGAGGGTATTTCACATGCCACAGAGCACTCCTATCCAGCATTTACTTCTTCAAGTCAAACTGCTTTTGAAGGTTCAAATTTATACCTTCAAGATGGTACACAAGACAACTATTCAAGTGATGGCCTAGATGATGCTGATGATTATGATAATAACAGTGACGACGAAGATGATTATGATTACTACAATGACGAAGATGGTGAGTTTAATGATATAGTGGATACATCAGCTGAACCTGGATCGCTACCAGTTGATTTGCTTGTTGATAAGCTCAAACTAAGACAAAAGGAGTAA

Protein sequence

>MS.gene97937.t1

MVLVALSSPLPAGRGNLFSSLPPNNPSSSSSSSSSATPRPPIPIPKYPPPRKSHPPPPPNPNPALKHHRNSKYYKPITHPTTIPSSDNRSVIIGESGVSYLLPGAPFEFQFSYSETPKVKPIAIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPEGMKGVKKVEMPGPFPVGKFPEEGVSREEILGEPLKKWEVQMLVKPMMADNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIEEKAGGKIIHRAGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRMKGKSLLPICKLAKNGVYTTLVKDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQVLIWRGKDWKSMYPQAPVFPPAEATITRDLENKGEVDDNQSKHISEMVSTSPKMLSLWKSAIESNKALLLEEFNIGPDALLEKVEEFEGISHATEHSYPAFTSSSQTAFEGSNLYLQDVDTSAEPGSLPVDLLVDKLKLRQKE