AlfalfaGEDB | MS.gene92042

M. sativa cultivar XinJiangDaYe / MS.gene92042

KEGG: K00830
GO: GO:0003674 GO:0003824
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92042.t1	XP_003600159.1	98.5	401	6	0	1	401	1	401	1.90E-227	798.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92042.t1	Q56YA5	86.0	401	56	0	1	401	1	401	9.1e-207	720.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92042.t1	G7J013	98.5	401	6	0	1	401	1	401	1.3e-227	798.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene92042	0.808773	2.63E-50	-1.69E-46
MS.gene049171	MS.gene92042	0.919948	2.38E-87	-1.69E-46
MS.gene049173	MS.gene92042	0.859198	4.88E-63	-1.69E-46
MS.gene049217	MS.gene92042	0.88079	4.10E-70	-1.69E-46
MS.gene049222	MS.gene92042	0.927858	6.53E-92	-1.69E-46
MS.gene049232	MS.gene92042	0.941591	3.18E-101	-1.69E-46
MS.gene049285	MS.gene92042	0.952004	6.14E-110	-1.69E-46
MS.gene049320	MS.gene92042	0.954008	7.75E-112	-1.69E-46
MS.gene04939	MS.gene92042	0.849348	3.43E-60	-1.69E-46
MS.gene049396	MS.gene92042	0.808469	3.05E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene92042.t1	MTR_3g053890	98.504	401	6	0	1	401	1	401	813
MS.gene92042.t1	MTR_3g053890	98.056	360	7	0	1	360	1	360	733
MS.gene92042.t1	MTR_5g090070	81.047	401	76	0	1	401	1	401	688
MS.gene92042.t1	MTR_5g094410	67.413	402	78	6	1	401	1	350	521
MS.gene92042.t1	MTR_5g067370	65.337	401	81	5	1	401	1	343	508

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene92042.t1	AT2G13360	86.035	401	56	1	401	1	401	733
MS.gene92042.t1	AT2G13360	86.035	401	56	1	401	1	401	733
MS.gene92042.t1	AT2G13360	86.035	401	56	1	401	1	401	733

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Find 109 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAATTTGAGCTT+AGG	0.398290	3.2:-36946525	MS.gene92042:CDS
AAAGAAAACTCGAAGTGATT+TGG	0.339222	3.2:+36947130	None:intergenic
AAAGATACAATACGATCTCC+GGG	0.597636	3.2:+36948105	None:intergenic
AAAGCCCTTTCCCTTCCTAC+TGG	0.518469	3.2:-36947203	MS.gene92042:CDS
AAATCCAATACCAGTAGGAA+GGG	0.577438	3.2:+36947193	None:intergenic
AACGATAGTCCTCGTTGTTT+CGG	0.283890	3.2:+36949192	None:intergenic
AACTGGTGTCACCAATAACT+TGG	0.495827	3.2:-36947905	MS.gene92042:CDS
AAGACCATAAAGAAGCTGAA+TGG	0.527183	3.2:+36947049	None:intergenic
AATACCAGTAGGAAGGGAAA+GGG	0.578211	3.2:+36947199	None:intergenic
ACAAAGAGATGGTTTCTTCC+TGG	0.409728	3.2:+36949260	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAAGGTTCATGTCAA+TGG	-	chr3.2:36948722-36948741	MS.gene92042:intron	30.0%
AAAGAAAACTCGAAGTGATT+TGG	+	chr3.2:36947760-36947779	None:intergenic	30.0%
AAGTTGTTTATCGAAAGACA+GGG	-	chr3.2:36946113-36946132	MS.gene92042:intron	30.0%
AATAAACTGAAAACAGCTGT+TGG	+	chr3.2:36946233-36946252	None:intergenic	30.0%
AGAATTAGCAATTTCAATGG+TGG	+	chr3.2:36949127-36949146	None:intergenic	30.0%
ATACAATTTGAGCTTAGGTT+TGG	-	chr3.2:36948367-36948386	MS.gene92042:intron	30.0%
ATGTTAACTATATGTATCGG+TGG	+	chr3.2:36948526-36948545	None:intergenic	30.0%
CATCCAAACATTGAACAATT+TGG	+	chr3.2:36945840-36945859	None:intergenic	30.0%
GAAATATTACTTAGGTGGTA+AGG	-	chr3.2:36947189-36947208	MS.gene92042:CDS	30.0%
GACTTGAAAATATCATTGCA+AGG	-	chr3.2:36947892-36947911	MS.gene92042:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	36945609	36949300	36945609	ID=MS.gene92042
chr3.2	mRNA	36945609	36949300	36945609	ID=MS.gene92042.t1;Parent=MS.gene92042
chr3.2	exon	36949096	36949300	36949096	ID=MS.gene92042.t1.exon1;Parent=MS.gene92042.t1
chr3.2	CDS	36949096	36949300	36949096	ID=cds.MS.gene92042.t1;Parent=MS.gene92042.t1
chr3.2	exon	36947884	36948168	36947884	ID=MS.gene92042.t1.exon2;Parent=MS.gene92042.t1
chr3.2	CDS	36947884	36948168	36947884	ID=cds.MS.gene92042.t1;Parent=MS.gene92042.t1
chr3.2	exon	36946969	36947335	36946969	ID=MS.gene92042.t1.exon3;Parent=MS.gene92042.t1
chr3.2	CDS	36946969	36947335	36946969	ID=cds.MS.gene92042.t1;Parent=MS.gene92042.t1
chr3.2	exon	36946461	36946671	36946461	ID=MS.gene92042.t1.exon4;Parent=MS.gene92042.t1
chr3.2	CDS	36946461	36946671	36946461	ID=cds.MS.gene92042.t1;Parent=MS.gene92042.t1
chr3.2	exon	36945609	36945746	36945609	ID=MS.gene92042.t1.exon5;Parent=MS.gene92042.t1
chr3.2	CDS	36945609	36945746	36945609	ID=cds.MS.gene92042.t1;Parent=MS.gene92042.t1

Gene Sequence

>MS.gene92042

ATGGATTATGTTAATGGACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCCGCAATTCCAGCTCTGACAAAAACTCTACTTGAGGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTATTGTTGCACGCCTTGATAAACCAAATTGTTCAATGTTTGGATGCGTATAATGATTTATTTGAGCTTATCTACTAACATAAGCACTTGTTGGACTGTTTGACAGAGCTTATGGAAACAGCTTATGACATATCCATAAGTTGTTTTCAGCTTAATTCCATAATCTCTCCAGGATAGCTTATGAAAAGAATTTATAACTTATATGAAAACAATTTAACTTTATTTTATCTTTTGTTACAAAAATAACCTATAGATAAGCACTTATATGATAAACGCTTATGCTATAACTGCTCTTAATTAAGTTGTTTATCGAAAGACAGGGGTCCTATTTGAATTGTATTATTTGAGCTTATCTATTGACATAAGCACTTTTGAGACTGTTTAGGAGAGCTTATATGAAAATAGTTTATGACAGTCCAACAGCTGTTTTCAGTTTATTTTCATAAGCTATCCAAGATAGCTTATGAAAATAATTTGATTTGATTTTATCTGTTTTTATAAAAATAGCTTATACATAAGCACTTATATGAAAAGCACTGTCGTTTTAAGACTTAATTAAACTGTTTATCCAAACAGAGAATCAATTAGACCACTGGATTGCCTTAGTAATCAGGATGATGCTCACTTGAATAAAATAGTTACCTTATTTACATTCATGACTTAGATACATCTAACTATATGCTTAATCCACTCTCTTAATCGTCTATGCTAGCTAAGTTGTTTACTCCATATATTTCATTCACTTTTGGTTAATGAATGTATTAAATTGTGTGTGTTTTGGTATCTTTCTTGTTTTATTTTGCATGTCTTTGGAGGTTACAAATAATGGCCTGAGATTGGTTCAGCAAGAGCAAATAATTTACGTTTTATCTTTATTAGGATATGGTTACGATGTTATTTCTAATAACGTTTTTGCATTTGGTTCAGGTACCGGTGCTTGGGAGAGTGCTCTGACAAACACGTTGTCGCCCGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCCGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGGTGAGTATGAAAACTTCTTACTTACATAGCCACAAAATCTGATTCTCTATCCAAGCTGTCATTGTACACACATGCTCCTAGTTTCACTGTTCAATGGTCAATCTTATAAAAATTTACCTTCGCAAATTATACTTTTGTTCTTTAGTTTCTGTTATTAGTTTCAGAAATATTACTTAGGTGGTAAGGTTCTGTTGGTTAAATCATTTACCTTCGCATGTTGATTTCTTGATATATGTTCACATGATATTTGAATTTCATTACTCAGTATATCCTTTTTATAATTATTGGCATTTCAATCTGACTCATATGACATAAGTATGCATCTGAAGACTGAAACTTGGACAGGATGACAAGTTATTCACTTGCAACGTCATAATTGGACTCTATGACCATAAACAAAATTTTGTTTTGAGTTGCCAATGATTATCGAGATATGTAAATTTGCATAAATTTTGTTATTCTTTGATGAAAATGCATTTTCGTACTGTCTTTTCTTTATTTTTATTGTCTTTATGAAATGGCACTCACATTGTAGTTTGGACACTCAGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATACACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATATCATTGCAAGGCACAATCGTTTAGGCACAGCAACCAGGTAAGACATAATTTGCGTGTTTTAAATTATTGTCAGGTCTTTAGATTCAAATCGCCTAAAAAAATTTCTAGCAAAAAAAAGATTATTGTCTGGACTTCAACAAGAAAATGCTAATTTTTGACAAGTGAGCAAAAGTCGTGCTGTCAAATAGCTTCTATCGCATAACGTAGAAAAATTTGAACAAACCTCTATTTTCCAGCAATTGAAGACACTGAGTTAAAAATTATTTATAATAGTTGAAACTTTTTTTTTGGTTAAGTCAATGAATCTGATAGGTGGTCAATATGGTAAATACAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGCGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGGTTTTCAGAATTGGACATCTTGGCAACTTGAACGAGGTAACATCAATTTCCTAAACTCTTGATAGCTATGTGGCCCTGATAGATGAAATTGGAGCCGTATCCGGTGTCCGCCACCGATACATATAGTTAACATCAATCACTTCTTTTTTATCAAACTACGTCACAGCGTTGTGTCAGGGTTTCATAGCTTATTAGTATATTAATCAATAACTAATATTGTGACAAAACACATTGTTTTGGCTTAACTTTTAGGGTCTTCATAATATGTTCAAGTTATACTTGTGGTAGTGTAATGAAATTTGAAGTTTAAAAATCAAGGTTCATGTCAATGGAAAAGTGACTATTACACGACCAATACACGTAAATATTTATAATATTTGACAAATGCAAAAGAAACTGTCGTTAATAGATGAATCGTTCTTTCTCTCTATGGTAAGGGCACACTATAAAAATTCATAAACTTGTTCTTAATTCTTCTTGGTAATTATGATCCTTTAAAAGTACTTTTTGTCCTACTTCAAAAGTACAATGTTACAGATCAATGATGTGTCCAGTATCTTACTCGACAATGACTCATGTGAATACATTCTCGATCCCTTTTTTTTTCTTTCTCTCTTTTTGAAATACTTATTGGTATTAACGTGTTAATGTCGTGTCTGGTGTCAGTGTCTGTACTTCAAAGGCATTATGAGAATAACATCAAGGTGACTTCCACCATTGAAATTGCTAATTCTTTAAATGTTTTTTCAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>MS.gene92042.t1

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI