Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195830 | XP_013462703.1 | 92.056 | 428 | 14 | 1 | 1 | 408 | 1 | 428 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195830 | sp|Q9XQ94|GLNA2_MEDSA | 89.720 | 428 | 24 | 1 | 1 | 408 | 1 | 428 | 0.0 | 789 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195830 | E1ANG4 | 92.056 | 428 | 14 | 1 | 1 | 408 | 1 | 428 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022960 | Msa0195830 | 0.811544 | 6.638998e-51 | -8.615850e-47 |
| Msa0024070 | Msa0195830 | 0.818162 | 2.263330e-52 | -8.615850e-47 |
| Msa0037300 | Msa0195830 | 0.801653 | 8.134166e-49 | -8.615850e-47 |
| Msa0045530 | Msa0195830 | 0.818825 | 1.601485e-52 | -8.615850e-47 |
| Msa0064490 | Msa0195830 | 0.800697 | 1.276267e-48 | -8.615850e-47 |
| Msa0067820 | Msa0195830 | 0.822481 | 2.314934e-53 | -8.615850e-47 |
| Msa0069230 | Msa0195830 | 0.802395 | 5.724472e-49 | -8.615850e-47 |
| Msa0085230 | Msa0195830 | 0.802925 | 4.451032e-49 | -8.615850e-47 |
| Msa0093830 | Msa0195830 | 0.810038 | 1.406230e-50 | -8.615850e-47 |
| Msa0097490 | Msa0195830 | 0.814376 | 1.590017e-51 | -8.615850e-47 |
| Msa0105500 | Msa0195830 | 0.805220 | 1.482889e-49 | -8.615850e-47 |
| Msa0145590 | Msa0195830 | 0.804696 | 1.908343e-49 | -8.615850e-47 |
| Msa0163170 | Msa0195830 | 0.805198 | 1.498731e-49 | -8.615850e-47 |
| Msa0178020 | Msa0195830 | 0.804931 | 1.704694e-49 | -8.615850e-47 |
| Msa0181380 | Msa0195830 | 0.809183 | 2.145791e-50 | -8.615850e-47 |
| Msa0185770 | Msa0195830 | 0.811484 | 6.842817e-51 | -8.615850e-47 |
| Msa0195830 | Msa0195850 | 0.800607 | 1.331011e-48 | -8.615850e-47 |
| Msa0195830 | Msa0196620 | 0.805651 | 1.204475e-49 | -8.615850e-47 |
| Msa0195830 | Msa0198280 | 0.816932 | 4.284932e-52 | -8.615850e-47 |
| Msa0195830 | Msa0224180 | 0.803978 | 2.692975e-49 | -8.615850e-47 |
| Msa0195830 | Msa0246510 | 0.815082 | 1.109083e-51 | -8.615850e-47 |
| Msa0195830 | Msa0247340 | 0.801385 | 9.233839e-49 | -8.615850e-47 |
| Msa0195830 | Msa0266100 | 0.820185 | 7.840119e-53 | -8.615850e-47 |
| Msa0195830 | Msa0266150 | 0.801680 | 8.031839e-49 | -8.615850e-47 |
| Msa0195830 | Msa0269790 | 0.808608 | 2.849242e-50 | -8.615850e-47 |
| Msa0195830 | Msa0271970 | 0.809636 | 1.715459e-50 | -8.615850e-47 |
| Msa0195830 | Msa0275260 | 0.811292 | 7.531720e-51 | -8.615850e-47 |
| Msa0195830 | Msa0280120 | 0.827897 | 1.213488e-54 | -8.615850e-47 |
| Msa0195830 | Msa0284980 | 0.814632 | 1.395686e-51 | -8.615850e-47 |
| Msa0195830 | Msa0288300 | 0.815853 | 7.471289e-52 | -8.615850e-47 |
| Msa0195830 | Msa0288360 | 0.821542 | 3.821224e-53 | -8.615850e-47 |
| Msa0195830 | Msa0313550 | 0.805481 | 1.307597e-49 | -8.615850e-47 |
| Msa0195830 | Msa0341710 | 0.803744 | 3.011992e-49 | -8.615850e-47 |
| Msa0195830 | Msa0369770 | 0.818457 | 1.940936e-52 | -8.615850e-47 |
| Msa0195830 | Msa0371010 | 0.805422 | 1.345507e-49 | -8.615850e-47 |
| Msa0195830 | Msa0371640 | 0.800411 | 1.459259e-48 | -8.615850e-47 |
| Msa0195830 | Msa0376760 | 0.804675 | 1.928058e-49 | -8.615850e-47 |
| Msa0195830 | Msa0378530 | 0.805090 | 1.578568e-49 | -8.615850e-47 |
| Msa0195830 | Msa0380470 | 0.816115 | 6.531674e-52 | -8.615850e-47 |
| Msa0195830 | Msa0390760 | 0.805396 | 1.362421e-49 | -8.615850e-47 |
| Msa0195830 | Msa0417140 | 0.808820 | 2.566717e-50 | -8.615850e-47 |
| Msa0195830 | Msa0429990 | 0.807541 | 4.805404e-50 | -8.615850e-47 |
| Msa0195830 | Msa0438990 | 0.805362 | 1.384924e-49 | -8.615850e-47 |
| Msa0195830 | Msa0463980 | 0.813482 | 2.502949e-51 | -8.615850e-47 |
| Msa0195830 | Msa0471700 | 0.801347 | 9.400977e-49 | -8.615850e-47 |
| Msa0195830 | Msa0474220 | 0.811284 | 7.562593e-51 | -8.615850e-47 |
| Msa0195830 | Msa0475080 | 0.825184 | 5.381817e-54 | -8.615850e-47 |
| Msa0195830 | Msa0485350 | 0.814121 | 1.810546e-51 | -8.615850e-47 |
| Msa0195830 | Msa0500580 | 0.818442 | 1.956345e-52 | -8.615850e-47 |
| Msa0195830 | Msa0509530 | 0.818285 | 2.123028e-52 | -8.615850e-47 |
| Msa0195830 | Msa0518720 | 0.801200 | 1.007367e-48 | -8.615850e-47 |
| Msa0195830 | Msa0522510 | 0.808191 | 3.495706e-50 | -8.615850e-47 |
| Msa0195830 | Msa0527420 | 0.820160 | 7.943895e-53 | -8.615850e-47 |
| Msa0195830 | Msa0538020 | 0.803226 | 3.857751e-49 | -8.615850e-47 |
| Msa0195830 | Msa0549700 | 0.812413 | 4.292915e-51 | -8.615850e-47 |
| Msa0195830 | Msa0555210 | 0.824915 | 6.229918e-54 | -8.615850e-47 |
| Msa0195830 | Msa0562740 | 0.809604 | 1.743365e-50 | -8.615850e-47 |
| Msa0195830 | Msa0578400 | 0.806796 | 6.912044e-50 | -8.615850e-47 |
| Msa0195830 | Msa0598980 | 0.801374 | 9.280139e-49 | -8.615850e-47 |
| Msa0195830 | Msa0605210 | 0.801595 | 8.360754e-49 | -8.615850e-47 |
| Msa0195830 | Msa0625820 | 0.807896 | 4.040300e-50 | -8.615850e-47 |
| Msa0195830 | Msa0644610 | 0.805484 | 1.305764e-49 | -8.615850e-47 |
| Msa0195830 | Msa0646310 | 0.817194 | 3.742362e-52 | -8.615850e-47 |
| Msa0195830 | Msa0649140 | 0.810007 | 1.427515e-50 | -8.615850e-47 |
| Msa0195830 | Msa0654560 | 0.801851 | 7.409398e-49 | -8.615850e-47 |
| Msa0195830 | Msa0677160 | 0.805185 | 1.507859e-49 | -8.615850e-47 |
| Msa0195830 | Msa0679880 | 0.815220 | 1.033520e-51 | -8.615850e-47 |
| Msa0195830 | Msa0687540 | 0.800341 | 1.508421e-48 | -8.615850e-47 |
| Msa0195830 | Msa0687620 | 0.805304 | 1.424333e-49 | -8.615850e-47 |
| Msa0195830 | Msa0694910 | 0.818375 | 2.025849e-52 | -8.615850e-47 |
| Msa0195830 | Msa0695470 | 0.806064 | 9.862139e-50 | -8.615850e-47 |
| Msa0195830 | Msa0703620 | 0.801048 | 1.082173e-48 | -8.615850e-47 |
| Msa0195830 | Msa0708450 | 0.817918 | 2.570666e-52 | -8.615850e-47 |
| Msa0195830 | Msa0712070 | 0.815477 | 9.060026e-52 | -8.615850e-47 |
| Msa0195830 | Msa0734430 | 0.807175 | 5.748196e-50 | -8.615850e-47 |
| Msa0195830 | Msa0753040 | 0.805084 | 1.583359e-49 | -8.615850e-47 |
| Msa0195830 | Msa0833980 | 0.818777 | 1.641686e-52 | -8.615850e-47 |
| Msa0195830 | Msa0868520 | 0.802071 | 6.675563e-49 | -8.615850e-47 |
| Msa0195830 | Msa0929440 | 0.815019 | 1.145595e-51 | -8.615850e-47 |
| Msa0195830 | Msa0933320 | 0.807211 | 5.647400e-50 | -8.615850e-47 |
| Msa0195830 | Msa0959970 | 0.808507 | 2.993852e-50 | -8.615850e-47 |
| Msa0195830 | Msa0967940 | 0.821270 | 4.415203e-53 | -8.615850e-47 |
| Msa0195830 | Msa0971100 | 0.806556 | 7.768316e-50 | -8.615850e-47 |
| Msa0195830 | Msa0978540 | 0.810241 | 1.270975e-50 | -8.615850e-47 |
| Msa0195830 | Msa0978550 | 0.801410 | 9.121638e-49 | -8.615850e-47 |
| Msa0195830 | Msa0978560 | 0.812344 | 4.445786e-51 | -8.615850e-47 |
| Msa0195830 | Msa0985570 | 0.824153 | 9.418447e-54 | -8.615850e-47 |
| Msa0195830 | Msa1031620 | 0.800555 | 1.364441e-48 | -8.615850e-47 |
| Msa0195830 | Msa1033250 | 0.822713 | 2.044113e-53 | -8.615850e-47 |
| Msa0195830 | Msa1070710 | 0.824377 | 8.341531e-54 | -8.615850e-47 |
| Msa0195830 | Msa1072850 | 0.830142 | 3.469650e-55 | -8.615850e-47 |
| Msa0195830 | Msa1095880 | 0.824807 | 6.607729e-54 | -8.615850e-47 |
| Msa0195830 | Msa1113460 | 0.802491 | 5.470219e-49 | -8.615850e-47 |
| Msa0195830 | Msa1121290 | 0.811018 | 8.632920e-51 | -8.615850e-47 |
| Msa0195830 | Msa1126980 | 0.803174 | 3.952679e-49 | -8.615850e-47 |
| Msa0195830 | Msa1158540 | 0.805018 | 1.634694e-49 | -8.615850e-47 |
| Msa0195830 | Msa1190670 | 0.809820 | 1.566004e-50 | -8.615850e-47 |
| Msa0195830 | Msa1196910 | 0.810028 | 1.413161e-50 | -8.615850e-47 |
| Msa0195830 | Msa1199700 | 0.802040 | 6.775824e-49 | -8.615850e-47 |
| Msa0195830 | Msa1206500 | 0.805269 | 1.448176e-49 | -8.615850e-47 |
| Msa0195830 | Msa1207770 | 0.806618 | 7.536464e-50 | -8.615850e-47 |
| Msa0195830 | Msa1208630 | 0.809061 | 2.279508e-50 | -8.615850e-47 |
| Msa0195830 | Msa1212070 | 0.822125 | 2.799545e-53 | -8.615850e-47 |
| Msa0195830 | Msa1222900 | 0.808994 | 2.355950e-50 | -8.615850e-47 |
| Msa0195830 | Msa1223050 | 0.805092 | 1.577498e-49 | -8.615850e-47 |
| Msa0195830 | Msa1225280 | 0.802581 | 5.241107e-49 | -8.615850e-47 |
| Msa0195830 | Msa1235880 | 0.807286 | 5.444757e-50 | -8.615850e-47 |
| Msa0195830 | Msa1236090 | 0.814960 | 1.180662e-51 | -8.615850e-47 |
| Msa0195830 | Msa1244380 | 0.807210 | 5.650871e-50 | -8.615850e-47 |
| Msa0195830 | Msa1244940 | 0.806137 | 9.517900e-50 | -8.615850e-47 |
| Msa0195830 | Msa1250490 | 0.802927 | 4.447033e-49 | -8.615850e-47 |
| Msa0195830 | Msa1263460 | 0.805935 | 1.049529e-49 | -8.615850e-47 |
| Msa0195830 | Msa1297550 | 0.800812 | 1.209344e-48 | -8.615850e-47 |
| Msa0195830 | Msa1302750 | 0.802674 | 5.015866e-49 | -8.615850e-47 |
| Msa0195830 | Msa1315990 | 0.801056 | 1.078063e-48 | -8.615850e-47 |
| Msa0195830 | Msa1350130 | 0.800124 | 1.669335e-48 | -8.615850e-47 |
| Msa0195830 | Msa1371690 | 0.819774 | 9.732048e-53 | -8.615850e-47 |
| Msa0195830 | Msa1373570 | 0.803460 | 3.449265e-49 | -8.615850e-47 |
| Msa0195830 | Msa1376230 | 0.820690 | 6.003601e-53 | -8.615850e-47 |
| Msa0195830 | Msa1381830 | 0.807083 | 6.010632e-50 | -8.615850e-47 |
| Msa0195830 | Msa1387650 | 0.803470 | 3.432334e-49 | -8.615850e-47 |
| Msa0195830 | Msa1388010 | 0.817932 | 2.551849e-52 | -8.615850e-47 |
| Msa0195830 | Msa1405990 | 0.803027 | 4.240422e-49 | -8.615850e-47 |
| Msa0195830 | Msa1409530 | 0.817454 | 3.269916e-52 | -8.615850e-47 |
| Msa0195830 | Msa1411390 | 0.805691 | 1.181034e-49 | -8.615850e-47 |
| Msa0195830 | Msa1412810 | 0.810008 | 1.426766e-50 | -8.615850e-47 |
| Msa0195830 | Msa1428050 | 0.808221 | 3.445308e-50 | -8.615850e-47 |
| Msa0195830 | Msa1439880 | 0.804098 | 2.542542e-49 | -8.615850e-47 |
| Msa0195830 | Msa1444750 | 0.816861 | 4.445002e-52 | -8.615850e-47 |
| Msa0195830 | Msa1449320 | 0.804452 | 2.145353e-49 | -8.615850e-47 |
| Msa0195830 | Msa1455000 | 0.802405 | 5.699046e-49 | -8.615850e-47 |
| Msa0195830 | Msa1455560 | 0.800084 | 1.701135e-48 | -8.615850e-47 |
| Msa0195830 | Msa1462700 | 0.809161 | 2.169930e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195830 | MtrunA17_Chr2g0287181 | 92.056 | 428 | 14 | 1 | 1 | 408 | 1 | 428 | 0.0 | 805 |
| Msa0195830 | MtrunA17_Chr2g0287211 | 89.019 | 428 | 27 | 1 | 1 | 408 | 1 | 428 | 0.0 | 786 |
| Msa0195830 | MtrunA17_Chr6g0479141 | 70.225 | 356 | 86 | 1 | 57 | 392 | 1 | 356 | 0.0 | 541 |
| Msa0195830 | MtrunA17_Chr3g0110261 | 70.506 | 356 | 85 | 1 | 57 | 392 | 1 | 356 | 0.0 | 538 |
| Msa0195830 | MtrunA17_Chr5g0434471 | 67.422 | 353 | 95 | 1 | 60 | 392 | 5 | 357 | 0.0 | 516 |
| Msa0195830 | MtrunA17_Chr8g0364341 | 73.846 | 65 | 17 | 0 | 288 | 352 | 9 | 73 | 7.05e-26 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195830 | AT5G35630.3 | 74.942 | 431 | 84 | 4 | 1 | 408 | 1 | 430 | 0.0 | 665 |
| Msa0195830 | AT5G35630.2 | 74.942 | 431 | 84 | 4 | 1 | 408 | 1 | 430 | 0.0 | 665 |
| Msa0195830 | AT5G35630.1 | 74.942 | 431 | 84 | 4 | 1 | 408 | 1 | 430 | 0.0 | 665 |
| Msa0195830 | AT5G16570.1 | 71.629 | 356 | 81 | 1 | 57 | 392 | 1 | 356 | 0.0 | 546 |
| Msa0195830 | AT5G37600.1 | 70.787 | 356 | 84 | 1 | 57 | 392 | 1 | 356 | 0.0 | 544 |
| Msa0195830 | AT1G66200.1 | 71.910 | 356 | 80 | 1 | 57 | 392 | 1 | 356 | 0.0 | 541 |
| Msa0195830 | AT1G66200.3 | 70.137 | 365 | 80 | 1 | 57 | 392 | 1 | 365 | 0.0 | 538 |
| Msa0195830 | AT3G17820.1 | 67.705 | 353 | 94 | 1 | 57 | 389 | 1 | 353 | 0.0 | 514 |
| Msa0195830 | AT1G48470.1 | 66.272 | 338 | 94 | 1 | 72 | 389 | 16 | 353 | 1.50e-175 | 494 |
| Msa0195830 | AT1G66200.2 | 69.841 | 252 | 56 | 1 | 57 | 288 | 1 | 252 | 4.23e-128 | 370 |
| Msa0195830 | AT5G16570.2 | 68.201 | 239 | 56 | 1 | 57 | 275 | 1 | 239 | 9.43e-120 | 348 |
Find 122 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAACATGGCACAGATTT+TGG | 0.188436 | 2_1:-12788242 | Msa0195830:exon |
| GGTTGAGGATCTACTTAATT+TGG | 0.214484 | 2_1:-12788059 | Msa0195830:CDS |
| TTGAAGCTGCTGACCATATC+TGG | 0.217821 | 2_1:-12786292 | Msa0195830:CDS |
| AACAATACCTCAATTGGTTT+TGG | 0.237863 | 2_1:+12785991 | None:intergenic |
| ATAAATATAAATAATCTAAA+AGG | 0.299519 | 2_1:+12785071 | None:intergenic |
| ATATGTGGTAACAGCATTAT+TGG | 0.304333 | 2_1:-12785247 | Msa0195830:CDS |
| GGTCTAAATCTATTGATTAA+TGG | 0.315795 | 2_1:-12785154 | Msa0195830:exon |
| AGCTCAGAAGCTTGCATTGA+AGG | 0.328927 | 2_1:-12785175 | Msa0195830:CDS |
| TTCTTATATATGCAGGGAAT+TGG | 0.339641 | 2_1:-12785474 | Msa0195830:intron |
| GGAATTTCAGCCTCAACCTT+TGG | 0.339649 | 2_1:+12786999 | None:intergenic |
| AGCTCAGAGGGATGCTCAAC+AGG | 0.340393 | 2_1:+12787401 | None:intergenic |
| CAGGATGTCATACCAATTAC+AGG | 0.346174 | 2_1:-12785845 | Msa0195830:intron |
| AATAATGCTGTTACCACATA+TGG | 0.356454 | 2_1:+12785249 | None:intergenic |
| GCCCCGGCACCACAGTAATA+AGG | 0.359395 | 2_1:+12786634 | None:intergenic |
| TTAGTGTCGTGTCTGGTGTC+TGG | 0.361232 | 2_1:-12788321 | Msa0195830:five_prime_UTR |
| AGTATTAATATCTTGTTGTC+TGG | 0.361664 | 2_1:-12785048 | Msa0195830:three_prime_UTR |
| TGGCCTGTTGGTGGCTATCC+TGG | 0.366008 | 2_1:-12786765 | Msa0195830:CDS |
| AAGCATAACAATACCTCAAT+TGG | 0.369129 | 2_1:+12785985 | None:intergenic |
| TCGTTGTCTGTGTTAACATA+TGG | 0.369289 | 2_1:-12784959 | Msa0195830:three_prime_UTR |
| GAATTTCAGCCTCAACCTTT+GGG | 0.369895 | 2_1:+12787000 | None:intergenic |
| TTTCACATCTGTTTGAAGTA+AGG | 0.375190 | 2_1:+12786800 | None:intergenic |
| TCAACTCTGGCACCATCAAC+AGG | 0.381942 | 2_1:-12788081 | Msa0195830:CDS |
| CTGACACAGGTGGTTAGGTT+TGG | 0.385231 | 2_1:-12788400 | None:intergenic |
| CTAAACAGGATTGGTGGAAC+TGG | 0.386899 | 2_1:-12787863 | Msa0195830:intron |
| GGTGTCTGACACAGGTGGTT+AGG | 0.386957 | 2_1:-12788405 | None:intergenic |
| ACTAGTAATAATTAAGATAA+TGG | 0.387761 | 2_1:+12788371 | None:intergenic |
| TTGATTAATGGCGTTCTAGA+TGG | 0.391098 | 2_1:-12785142 | Msa0195830:three_prime_UTR |
| TACAAGGCTTGTTTATATGC+TGG | 0.409312 | 2_1:-12786574 | Msa0195830:CDS |
| TAGATCCTCAACCCTGTTGA+TGG | 0.410630 | 2_1:+12788069 | None:intergenic |
| GGTCCTTATTACTGTGGTGC+CGG | 0.411618 | 2_1:-12786637 | Msa0195830:CDS |
| GGAAATGAGAGAAGGTTGAC+AGG | 0.416285 | 2_1:-12785623 | Msa0195830:CDS |
| TTTAACCTTGACAGGGTGAC+TGG | 0.422533 | 2_1:-12785875 | Msa0195830:intron |
| GCCGGGGCAGATAAGTCATT+TGG | 0.423725 | 2_1:-12786619 | Msa0195830:CDS |
| CTGACCATATCTGGGCTTCA+AGG | 0.425233 | 2_1:-12786283 | Msa0195830:CDS |
| GTCCTTATTACTGTGGTGCC+GGG | 0.426651 | 2_1:-12786636 | Msa0195830:CDS |
| ACAGATGTGAAATGGCCATT+AGG | 0.428436 | 2_1:-12786789 | Msa0195830:CDS |
| ATGCTCAACAGGCTTTGATA+TGG | 0.434596 | 2_1:+12787412 | None:intergenic |
| GCATAATTGCTGAGTACATC+TGG | 0.436205 | 2_1:-12788015 | Msa0195830:intron |
| TACTTCAAACAGATGTGAAA+TGG | 0.440857 | 2_1:-12786797 | Msa0195830:CDS |
| TGCTGCAGTCTGTGAGGAGC+TGG | 0.442125 | 2_1:-12785110 | Msa0195830:three_prime_UTR |
| ACAAAGAGCATGAGGGAAGA+TGG | 0.452148 | 2_1:-12785722 | Msa0195830:CDS |
| TGTACCTTGAAGCCCAGATA+TGG | 0.456041 | 2_1:+12786279 | None:intergenic |
| CTTGTCTGACATTGTGTAGA+AGG | 0.457305 | 2_1:+12788217 | None:intergenic |
| CCATGTGGACCTTGTGGCGA+AGG | 0.460628 | 2_1:+12785660 | None:intergenic |
| CTCCACATCTTTGATGAGGT+TGG | 0.462942 | 2_1:+12788166 | None:intergenic |
| GAGACTGAGAAGAATGGAAA+AGG | 0.472602 | 2_1:-12785420 | Msa0195830:intron |
| GGCAGAGAGTACATTATTGT+GGG | 0.479550 | 2_1:-12785226 | Msa0195830:CDS |
| GAGGGAAGATGGAGGATTTG+AGG | 0.482374 | 2_1:-12785711 | Msa0195830:CDS |
| CCACCAACAGGCCAACCTAA+TGG | 0.483275 | 2_1:+12786774 | None:intergenic |
| CTTCCTAAGTGGAACTATGA+TGG | 0.483826 | 2_1:-12787380 | Msa0195830:CDS |
| AGAAGGAGATTTACCTGGCC+AGG | 0.485726 | 2_1:+12786517 | None:intergenic |
| GCAATTATGCTGTTAGTGAA+TGG | 0.489752 | 2_1:+12788028 | None:intergenic |
| TGGTGGCTATCCTGGTCCTC+AGG | 0.500616 | 2_1:-12786757 | Msa0195830:intron |
| CCATTAGGTTGGCCTGTTGG+TGG | 0.503990 | 2_1:-12786774 | Msa0195830:CDS |
| GGACCAGGATAGCCACCAAC+AGG | 0.504091 | 2_1:+12786762 | None:intergenic |
| TTCTGATAAATTCAGAGTAA+TGG | 0.507890 | 2_1:-12788107 | Msa0195830:CDS |
| TGGCAGAGAGTACATTATTG+TGG | 0.507952 | 2_1:-12785227 | Msa0195830:CDS |
| ACATGTGTTAGTGTCGTGTC+TGG | 0.508859 | 2_1:-12788328 | Msa0195830:five_prime_UTR |
| GGAAGAGAGACTGAGAAGAA+TGG | 0.511936 | 2_1:-12785426 | Msa0195830:CDS |
| AGAGTAATGGCAATCAACTC+TGG | 0.512452 | 2_1:-12788094 | Msa0195830:CDS |
| TAGTGTCGTGTCTGGTGTCT+GGG | 0.514839 | 2_1:-12788320 | Msa0195830:five_prime_UTR |
| ACTAATGCAGAGGTTATGCC+TGG | 0.517765 | 2_1:-12786535 | Msa0195830:CDS |
| TGCAGAGGTTATGCCTGGCC+AGG | 0.520775 | 2_1:-12786530 | Msa0195830:intron |
| AAGGTCCACATGGAAGCATA+TGG | 0.524565 | 2_1:-12785650 | Msa0195830:CDS |
| TATGGATCCATGTTTGAAGC+TGG | 0.531181 | 2_1:+12785267 | None:intergenic |
| CTTCAGAAACCCAAAGGTTG+AGG | 0.531193 | 2_1:-12787009 | Msa0195830:CDS |
| TATCTCTTATTTGTAGCGAT+AGG | 0.538893 | 2_1:+12787047 | None:intergenic |
| GAATTTATCCCTTCGCCACA+AGG | 0.546223 | 2_1:-12785669 | Msa0195830:CDS |
| CCTTGATCCAAAACCAATTG+AGG | 0.548996 | 2_1:-12785998 | Msa0195830:intron |
| TGGCACCATCAACAGGGTTG+AGG | 0.550831 | 2_1:-12788074 | Msa0195830:CDS |
| TGAAGCTGCTGACCATATCT+GGG | 0.554602 | 2_1:-12786291 | Msa0195830:CDS |
| GTCTGTGTTAACATATGGTA+TGG | 0.558902 | 2_1:-12784954 | Msa0195830:three_prime_UTR |
| AACTATGATGGATCTAGCAC+TGG | 0.560911 | 2_1:-12787368 | Msa0195830:CDS |
| CAGACGTCCAGCTTCAAACA+TGG | 0.561716 | 2_1:-12785274 | Msa0195830:CDS |
| GATCCATCATAGTTCCACTT+AGG | 0.563451 | 2_1:+12787377 | None:intergenic |
| TGATGGATCTAGCACTGGAC+AGG | 0.564127 | 2_1:-12787363 | Msa0195830:CDS |
| AGGATTTGAGGTCATAAAGA+AGG | 0.566148 | 2_1:-12785699 | Msa0195830:CDS |
| TATATCTGATGCTCATTACA+AGG | 0.567381 | 2_1:-12786590 | Msa0195830:CDS |
| AGAGCTTCAGCCTCTAGAGT+TGG | 0.568683 | 2_1:+12785201 | None:intergenic |
| TTCAAACATGGATCCATATG+TGG | 0.571364 | 2_1:-12785262 | Msa0195830:CDS |
| TGGCCATTAGGTTGGCCTGT+TGG | 0.578206 | 2_1:-12786777 | Msa0195830:CDS |
| TCCAAATGACTTATCTGCCC+CGG | 0.580834 | 2_1:+12786618 | None:intergenic |
| CAGGGTGACTGGAATGGTGC+AGG | 0.581852 | 2_1:-12785864 | Msa0195830:CDS |
| ATGGAGAAGGAAATGAGAGA+AGG | 0.582440 | 2_1:-12785631 | Msa0195830:CDS |
| CCTTCGCCACAAGGTCCACA+TGG | 0.585660 | 2_1:-12785660 | Msa0195830:CDS |
| CCAAGAAAATGTGTTGATGC+TGG | 0.585913 | 2_1:+12785586 | None:intergenic |
| ATGTGAAATGGCCATTAGGT+TGG | 0.587256 | 2_1:-12786785 | Msa0195830:CDS |
| GGTTGGAGTTGCAATTGAAG+AGG | 0.591123 | 2_1:+12788183 | None:intergenic |
| CTCCAACCTCATCAAAGATG+TGG | 0.593992 | 2_1:-12788168 | Msa0195830:CDS |
| GTATTAGTTACCTGAGGACC+AGG | 0.594950 | 2_1:+12786747 | None:intergenic |
| CATGTGGACCTTGTGGCGAA+GGG | 0.595534 | 2_1:+12785661 | None:intergenic |
| ACGTGGATGCTCAATTCGTG+TGG | 0.598946 | 2_1:-12785448 | Msa0195830:CDS |
| CACATGGAAGCATATGGAGA+AGG | 0.600933 | 2_1:-12785644 | Msa0195830:CDS |
| TATCAAGTTGGTCCTAGTGT+AGG | 0.601050 | 2_1:-12786317 | Msa0195830:CDS |
| ATCCCTCTGAGCTTCCTAAG+TGG | 0.601311 | 2_1:-12787391 | Msa0195830:CDS |
| TCCTTATTACTGTGGTGCCG+GGG | 0.602095 | 2_1:-12786635 | Msa0195830:CDS |
| TTGCAGTGGGAGTATCAAGT+TGG | 0.608671 | 2_1:-12786329 | Msa0195830:intron |
| CAGAGAATTACTGAACAAGC+TGG | 0.610576 | 2_1:-12786033 | Msa0195830:CDS |
| AGGTTGAGGCTGAAATTCCA+TGG | 0.614181 | 2_1:-12786995 | Msa0195830:intron |
| CTTCTCCATATGCTTCCATG+TGG | 0.614984 | 2_1:+12785645 | None:intergenic |
| TGCGATGCTTATACAACACA+AGG | 0.616318 | 2_1:-12787074 | Msa0195830:CDS |
| TTCCACTTAGGAAGCTCAGA+GGG | 0.616333 | 2_1:+12787389 | None:intergenic |
| AGAACTCCACATCTTTGATG+AGG | 0.618211 | 2_1:+12788162 | None:intergenic |
| TATGCTGGAATTAACATCAG+TGG | 0.620743 | 2_1:-12786559 | Msa0195830:CDS |
| GCAGCTTCAATACCTACACT+AGG | 0.626988 | 2_1:+12786305 | None:intergenic |
| CGTGGATGCTCAATTCGTGT+GGG | 0.628426 | 2_1:-12785447 | Msa0195830:CDS |
| ATGCTTCCATGTGGACCTTG+TGG | 0.630433 | 2_1:+12785654 | None:intergenic |
| CCTTGACAGGGTGACTGGAA+TGG | 0.632303 | 2_1:-12785870 | Msa0195830:intron |
| CGGCACTGCTGCAGTCTGTG+AGG | 0.634575 | 2_1:-12785116 | Msa0195830:three_prime_UTR |
| TATCAGGGTCCTTATTACTG+TGG | 0.636323 | 2_1:-12786643 | Msa0195830:intron |
| AATGGCGTTCTAGATGGAGT+CGG | 0.642104 | 2_1:-12785136 | Msa0195830:three_prime_UTR |
| ATGCAGGGAATTGGTAAACG+TGG | 0.644180 | 2_1:-12785465 | Msa0195830:intron |
| GGCTTCAAGGTACATCCTTG+AGG | 0.647096 | 2_1:-12786270 | Msa0195830:intron |
| TGAAATCTTCAGAAACCCAA+AGG | 0.650810 | 2_1:-12787015 | Msa0195830:CDS |
| CATCAGTGGCACTAATGCAG+AGG | 0.657463 | 2_1:-12786545 | Msa0195830:CDS |
| AAGAGCATGAGGGAAGATGG+AGG | 0.657505 | 2_1:-12785719 | Msa0195830:CDS |
| CAACTCTGGCACCATCAACA+GGG | 0.659254 | 2_1:-12788080 | Msa0195830:CDS |
| ATTGTGGGAACCAACTCTAG+AGG | 0.660710 | 2_1:-12785211 | Msa0195830:CDS |
| CACTTCAGTATCTTCACGAG+GGG | 0.662399 | 2_1:+12787340 | None:intergenic |
| ATCACTTCAGTATCTTCACG+AGG | 0.668751 | 2_1:+12787338 | None:intergenic |
| TCACTTCAGTATCTTCACGA+GGG | 0.689367 | 2_1:+12787339 | None:intergenic |
| GTTCCACTTAGGAAGCTCAG+AGG | 0.715738 | 2_1:+12787388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTTTTTTGG+TGG | + | chr2_1:12787374-12787393 | None:intergenic | 10.0% |
| !!! | AAAAAATTTACTAATTGTTT+TGG | - | chr2_1:12787386-12787405 | Msa0195830:CDS | 10.0% |
| !! | ACTAGTAATAATTAAGATAA+TGG | + | chr2_1:12784917-12784936 | None:intergenic | 15.0% |
| !! | TATATACTCATAATTTGATT+AGG | + | chr2_1:12785337-12785356 | None:intergenic | 15.0% |
| !! | AAAAAAGATCAAATTAAATC+TGG | + | chr2_1:12786036-12786055 | None:intergenic | 15.0% |
| !!! | GTTGGTAATATTAAAAAATA+AGG | + | chr2_1:12786329-12786348 | None:intergenic | 15.0% |
| !!! | TGTTTTATTTCAAATTTCAT+AGG | - | chr2_1:12786572-12786591 | Msa0195830:CDS | 15.0% |
| !! | AAACAATTCAAATAATTACA+AGG | + | chr2_1:12786913-12786932 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTAAGCAGAACA+TGG | - | chr2_1:12785031-12785050 | Msa0195830:intron | 20.0% |
| !! | AGAATACAAAACATATATAC+AGG | + | chr2_1:12785849-12785868 | None:intergenic | 20.0% |
| !! | AATTTGCAAACTTCAAAATA+TGG | - | chr2_1:12786595-12786614 | Msa0195830:CDS | 20.0% |
| !!! | AATTTCATTTAACCTACTTT+TGG | - | chr2_1:12787039-12787058 | Msa0195830:CDS | 20.0% |
| !!! | ATTTCATTTAACCTACTTTT+GGG | - | chr2_1:12787040-12787059 | Msa0195830:CDS | 20.0% |
| !! | TGAAATATTCTTATATATGC+AGG | - | chr2_1:12787804-12787823 | Msa0195830:intron | 20.0% |
| !! | GAAATATTCTTATATATGCA+GGG | - | chr2_1:12787805-12787824 | Msa0195830:intron | 20.0% |
| ! | TTCTGATAAATTCAGAGTAA+TGG | - | chr2_1:12785178-12785197 | Msa0195830:CDS | 25.0% |
| !!! | ATACTTTTTCTAAACAGGAT+TGG | - | chr2_1:12785413-12785432 | Msa0195830:intron | 25.0% |
| !! | TTAGGTTGTTTATCAAAACA+TGG | + | chr2_1:12785487-12785506 | None:intergenic | 25.0% |
| ! | ATGACAAGAATTTATGCTAT+AGG | + | chr2_1:12785517-12785536 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGTTCA+TGG | - | chr2_1:12785652-12785671 | Msa0195830:CDS | 25.0% |
| ! | ATCAGACAATAACATTAGTA+GGG | + | chr2_1:12785802-12785821 | None:intergenic | 25.0% |
| ! | AATCAGACAATAACATTAGT+AGG | + | chr2_1:12785803-12785822 | None:intergenic | 25.0% |
| ! | CAGAAACAAATTCTTACTAT+AGG | + | chr2_1:12785973-12785992 | None:intergenic | 25.0% |
| ! | AGATCAAATTAAATCTGGAA+TGG | + | chr2_1:12786031-12786050 | None:intergenic | 25.0% |
| !!! | TATCTTCTATTTTAGATGCT+CGG | + | chr2_1:12786372-12786391 | None:intergenic | 25.0% |
| !! | ATAGAAGATAACTGAACTTT+TGG | - | chr2_1:12786382-12786401 | Msa0195830:intron | 25.0% |
| ! | GAAATAAAACACAAAAGAAC+TGG | + | chr2_1:12786563-12786582 | None:intergenic | 25.0% |
| ! | AAAAGATTTCTTGATGTATC+AGG | - | chr2_1:12786626-12786645 | Msa0195830:CDS | 25.0% |
| ! | AAAGATTTCTTGATGTATCA+GGG | - | chr2_1:12786627-12786646 | Msa0195830:CDS | 25.0% |
| ! | ATCATAACACATGATACAAA+AGG | + | chr2_1:12786797-12786816 | None:intergenic | 25.0% |
| ! | ACTTCATAATAAAGTATGTC+AGG | + | chr2_1:12786876-12786895 | None:intergenic | 25.0% |
| ! | CATACTTTATTATGAAGTGT+CGG | - | chr2_1:12786878-12786897 | Msa0195830:intron | 25.0% |
| !!! | TTGTTTTATGAATATTGCAG+TGG | - | chr2_1:12786942-12786961 | Msa0195830:intron | 25.0% |
| !! | TGTTTTATGAATATTGCAGT+GGG | - | chr2_1:12786943-12786962 | Msa0195830:intron | 25.0% |
| !!! | TTTCATTTAACCTACTTTTG+GGG | - | chr2_1:12787041-12787060 | Msa0195830:CDS | 25.0% |
| !!! | TGTTTTGATTGTAGGTTATT+TGG | - | chr2_1:12787984-12788003 | Msa0195830:intron | 25.0% |
| !! | GGTCTAAATCTATTGATTAA+TGG | - | chr2_1:12788131-12788150 | Msa0195830:CDS | 25.0% |
| !! | AGTATTAATATCTTGTTGTC+TGG | - | chr2_1:12788237-12788256 | Msa0195830:CDS | 25.0% |
| TTCTTCTGTATGAACTATGA+AGG | - | chr2_1:12785369-12785388 | Msa0195830:intron | 30.0% | |
| !!! | CTCTGATACTTTTTCTAAAC+AGG | - | chr2_1:12785408-12785427 | Msa0195830:intron | 30.0% |
| TATGCTATAGGCAGTTAATT+AGG | + | chr2_1:12785505-12785524 | None:intergenic | 30.0% | |
| !! | GTTATTTTCATAAGCTGTTG+TGG | - | chr2_1:12785617-12785636 | Msa0195830:CDS | 30.0% |
| ACCCATACAATGTTGTAAAT+AGG | - | chr2_1:12785762-12785781 | Msa0195830:intron | 30.0% | |
| GCCTATTTACAACATTGTAT+GGG | + | chr2_1:12785766-12785785 | None:intergenic | 30.0% | |
| AGCCTATTTACAACATTGTA+TGG | + | chr2_1:12785767-12785786 | None:intergenic | 30.0% | |
| ! | TTCATGACATGTTGATTGAA+AGG | - | chr2_1:12786141-12786160 | Msa0195830:intron | 30.0% |
| !! | CGAATTATTTTGTTTCACGA+AGG | - | chr2_1:12786183-12786202 | Msa0195830:intron | 30.0% |
| ! | TATCTCTTATTTGTAGCGAT+AGG | + | chr2_1:12786241-12786260 | None:intergenic | 30.0% |
| ! | GTTGTATGTTGATTGTTCAA+AGG | - | chr2_1:12786440-12786459 | Msa0195830:intron | 30.0% |
| ! | ATGTTGATTGTTCAAAGGTT+CGG | - | chr2_1:12786445-12786464 | Msa0195830:intron | 30.0% |
| ! | TTTCACATCTGTTTGAAGTA+AGG | + | chr2_1:12786488-12786507 | None:intergenic | 30.0% |
| TACTTCAAACAGATGTGAAA+TGG | - | chr2_1:12786488-12786507 | Msa0195830:intron | 30.0% | |
| TATATCTGATGCTCATTACA+AGG | - | chr2_1:12786695-12786714 | Msa0195830:intron | 30.0% | |
| GGTTAAATGAAATTACCTCA+AGG | + | chr2_1:12787033-12787052 | None:intergenic | 30.0% | |
| TAGAACTATACGATACAGAA+AGG | - | chr2_1:12787095-12787114 | Msa0195830:intron | 30.0% | |
| !!! | GGCTTTTGGTTCATTAATAA+TGG | - | chr2_1:12787173-12787192 | Msa0195830:intron | 30.0% |
| !! | AACAATACCTCAATTGGTTT+TGG | + | chr2_1:12787297-12787316 | None:intergenic | 30.0% |
| AAGCATAACAATACCTCAAT+TGG | + | chr2_1:12787303-12787322 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTTAACCTTGACA+GGG | - | chr2_1:12787403-12787422 | Msa0195830:CDS | 30.0% |
| CATGTCAAAAAACCTGTAAT+TGG | + | chr2_1:12787455-12787474 | None:intergenic | 30.0% | |
| !! | TTTTTAGTACAAAGAGCATG+AGG | - | chr2_1:12787555-12787574 | Msa0195830:intron | 30.0% |
| !! | TTTTAGTACAAAGAGCATGA+GGG | - | chr2_1:12787556-12787575 | Msa0195830:intron | 30.0% |
| TTCTTATATATGCAGGGAAT+TGG | - | chr2_1:12787811-12787830 | Msa0195830:intron | 30.0% | |
| AATAATGCTGTTACCACATA+TGG | + | chr2_1:12788039-12788058 | None:intergenic | 30.0% | |
| ATATGTGGTAACAGCATTAT+TGG | - | chr2_1:12788038-12788057 | Msa0195830:CDS | 30.0% | |
| TCATCTCATAACCAATAACT+AGG | + | chr2_1:12788281-12788300 | None:intergenic | 30.0% | |
| GGTTGAGGATCTACTTAATT+TGG | - | chr2_1:12785226-12785245 | Msa0195830:CDS | 35.0% | |
| GCAATTATGCTGTTAGTGAA+TGG | + | chr2_1:12785260-12785279 | None:intergenic | 35.0% | |
| ! | CTTTTTCTAAACAGGATTGG+TGG | - | chr2_1:12785416-12785435 | Msa0195830:intron | 35.0% |
| ! | ATTAAATCTGGAATGGCATG+TGG | + | chr2_1:12786024-12786043 | None:intergenic | 35.0% |
| ! | GGATCTTTGAAAATTGCTTG+AGG | + | chr2_1:12786069-12786088 | None:intergenic | 35.0% |
| ! | ATTTTCAAAGATCCTTTCCG+CGG | - | chr2_1:12786075-12786094 | Msa0195830:intron | 35.0% |
| !! | GGTAACAACATTTTGGTAAG+CGG | - | chr2_1:12786099-12786118 | Msa0195830:intron | 35.0% |
| TGAAATCTTCAGAAACCCAA+AGG | - | chr2_1:12786270-12786289 | Msa0195830:intron | 35.0% | |
| AAGGAGTAACATACATACCA+TGG | + | chr2_1:12786310-12786329 | None:intergenic | 35.0% | |
| GCATTGCATCTAACAATAGT+TGG | + | chr2_1:12786347-12786366 | None:intergenic | 35.0% | |
| ! | TACAAGGCTTGTTTATATGC+TGG | - | chr2_1:12786711-12786730 | Msa0195830:intron | 35.0% |
| TATGCTGGAATTAACATCAG+TGG | - | chr2_1:12786726-12786745 | Msa0195830:intron | 35.0% | |
| CATGATACAAAAGGAACAGA+AGG | + | chr2_1:12786788-12786807 | None:intergenic | 35.0% | |
| ATTGACACAGACACATACAT+CGG | - | chr2_1:12786826-12786845 | Msa0195830:CDS | 35.0% | |
| GATACAGAAAGGTTAAGCTT+CGG | - | chr2_1:12787106-12787125 | Msa0195830:intron | 35.0% | |
| TCAGTGTCTAAATTCTGTAG+AGG | - | chr2_1:12787152-12787171 | Msa0195830:intron | 35.0% | |
| ! | CTAAATTCTGTAGAGGCTTT+TGG | - | chr2_1:12787159-12787178 | Msa0195830:intron | 35.0% |
| !!! | GTTTTGGTTTTAACCTTGAC+AGG | - | chr2_1:12787402-12787421 | Msa0195830:CDS | 35.0% |
| ! | AGGATTTGAGGTCATAAAGA+AGG | - | chr2_1:12787586-12787605 | Msa0195830:intron | 35.0% |
| ! | CAGCATCAACACATTTTCTT+GGG | - | chr2_1:12787700-12787719 | Msa0195830:intron | 35.0% |
| TACAATCAAAACATCAGCGA+AGG | + | chr2_1:12787977-12787996 | None:intergenic | 35.0% | |
| !!! | TTCGCTGATGTTTTGATTGT+AGG | - | chr2_1:12787976-12787995 | Msa0195830:intron | 35.0% |
| TTCAAACATGGATCCATATG+TGG | - | chr2_1:12788023-12788042 | Msa0195830:CDS | 35.0% | |
| ! | TTGATTAATGGCGTTCTAGA+TGG | - | chr2_1:12788143-12788162 | Msa0195830:CDS | 35.0% |
| TCATAACCAATAACTAGGCA+TGG | + | chr2_1:12788276-12788295 | None:intergenic | 35.0% | |
| TCGTTGTCTGTGTTAACATA+TGG | - | chr2_1:12788326-12788345 | Msa0195830:five_prime_UTR | 35.0% | |
| GTCTGTGTTAACATATGGTA+TGG | - | chr2_1:12788331-12788350 | Msa0195830:five_prime_UTR | 35.0% | |
| CTTGTCTGACATTGTGTAGA+AGG | + | chr2_1:12785071-12785090 | None:intergenic | 40.0% | |
| AGAACTCCACATCTTTGATG+AGG | + | chr2_1:12785126-12785145 | None:intergenic | 40.0% | |
| AGAGTAATGGCAATCAACTC+TGG | - | chr2_1:12785191-12785210 | Msa0195830:CDS | 40.0% | |
| GCATAATTGCTGAGTACATC+TGG | - | chr2_1:12785270-12785289 | Msa0195830:CDS | 40.0% | |
| AAGCTGTTGTGGAGAACTTA+TGG | - | chr2_1:12785628-12785647 | Msa0195830:CDS | 40.0% | |
| CAACATTGTATGGGTCTGTT+TGG | + | chr2_1:12785757-12785776 | None:intergenic | 40.0% | |
| ! | ATGCTCAACAGGCTTTGATA+TGG | + | chr2_1:12785876-12785895 | None:intergenic | 40.0% |
| CTTCCTAAGTGGAACTATGA+TGG | - | chr2_1:12785905-12785924 | Msa0195830:intron | 40.0% | |
| GATCCATCATAGTTCCACTT+AGG | + | chr2_1:12785911-12785930 | None:intergenic | 40.0% | |
| !! | AACTATGATGGATCTAGCAC+TGG | - | chr2_1:12785917-12785936 | Msa0195830:intron | 40.0% |
| TCACTTCAGTATCTTCACGA+GGG | + | chr2_1:12785949-12785968 | None:intergenic | 40.0% | |
| ATCACTTCAGTATCTTCACG+AGG | + | chr2_1:12785950-12785969 | None:intergenic | 40.0% | |
| TGAAAATTGCTTGAGGACTG+AGG | + | chr2_1:12786062-12786081 | None:intergenic | 40.0% | |
| TGCGATGCTTATACAACACA+AGG | - | chr2_1:12786211-12786230 | Msa0195830:intron | 40.0% | |
| GAATTTCAGCCTCAACCTTT+GGG | + | chr2_1:12786288-12786307 | None:intergenic | 40.0% | |
| ACAGATGTGAAATGGCCATT+AGG | - | chr2_1:12786496-12786515 | Msa0195830:intron | 40.0% | |
| ATGTGAAATGGCCATTAGGT+TGG | - | chr2_1:12786500-12786519 | Msa0195830:intron | 40.0% | |
| GAACTGGTATTAGTTACCTG+AGG | + | chr2_1:12786547-12786566 | None:intergenic | 40.0% | |
| TATCAGGGTCCTTATTACTG+TGG | - | chr2_1:12786642-12786661 | Msa0195830:intron | 40.0% | |
| !! | TATCAAGTTGGTCCTAGTGT+AGG | - | chr2_1:12786968-12786987 | Msa0195830:intron | 40.0% |
| TGTGTGTAAACCCCAAAAGT+AGG | + | chr2_1:12787054-12787073 | None:intergenic | 40.0% | |
| CAGAGAATTACTGAACAAGC+TGG | - | chr2_1:12787252-12787271 | Msa0195830:intron | 40.0% | |
| !!! | CCTCAATTGGTTTTGGATCA+AGG | + | chr2_1:12787290-12787309 | None:intergenic | 40.0% |
| CCTTGATCCAAAACCAATTG+AGG | - | chr2_1:12787287-12787306 | Msa0195830:intron | 40.0% | |
| CAGGATGTCATACCAATTAC+AGG | - | chr2_1:12787440-12787459 | Msa0195830:intron | 40.0% | |
| ATGGAGAAGGAAATGAGAGA+AGG | - | chr2_1:12787654-12787673 | Msa0195830:intron | 40.0% | |
| ! | CCAAGAAAATGTGTTGATGC+TGG | + | chr2_1:12787702-12787721 | None:intergenic | 40.0% |
| ! | CCAGCATCAACACATTTTCT+TGG | - | chr2_1:12787699-12787718 | Msa0195830:intron | 40.0% |
| GAGACTGAGAAGAATGGAAA+AGG | - | chr2_1:12787865-12787884 | Msa0195830:intron | 40.0% | |
| ! | TATGGATCCATGTTTGAAGC+TGG | + | chr2_1:12788021-12788040 | None:intergenic | 40.0% |
| ! | TGGCAGAGAGTACATTATTG+TGG | - | chr2_1:12788058-12788077 | Msa0195830:CDS | 40.0% |
| ! | GGCAGAGAGTACATTATTGT+GGG | - | chr2_1:12788059-12788078 | Msa0195830:CDS | 40.0% |
| ! | TCTTGTTGTCTGGACAAATG+AGG | - | chr2_1:12788247-12788266 | Msa0195830:exon | 40.0% |
| ACATGTGTTAGTGTCGTGTC+TGG | - | chr2_1:12784957-12784976 | Msa0195830:three_prime_UTR | 45.0% | |
| ! | GCAGAACATGGCACAGATTT+TGG | - | chr2_1:12785043-12785062 | Msa0195830:intron | 45.0% |
| GGTTGGAGTTGCAATTGAAG+AGG | + | chr2_1:12785105-12785124 | None:intergenic | 45.0% | |
| CTCCAACCTCATCAAAGATG+TGG | - | chr2_1:12785117-12785136 | Msa0195830:three_prime_UTR | 45.0% | |
| CTCCACATCTTTGATGAGGT+TGG | + | chr2_1:12785122-12785141 | None:intergenic | 45.0% | |
| TAGATCCTCAACCCTGTTGA+TGG | + | chr2_1:12785219-12785238 | None:intergenic | 45.0% | |
| ! | CTAAACAGGATTGGTGGAAC+TGG | - | chr2_1:12785422-12785441 | Msa0195830:CDS | 45.0% |
| TTCCACTTAGGAAGCTCAGA+GGG | + | chr2_1:12785899-12785918 | None:intergenic | 45.0% | |
| CACTTCAGTATCTTCACGAG+GGG | + | chr2_1:12785948-12785967 | None:intergenic | 45.0% | |
| AAATTGCTTGAGGACTGAGG+AGG | + | chr2_1:12786059-12786078 | None:intergenic | 45.0% | |
| CCAAAATGTTGTTACCACCG+CGG | + | chr2_1:12786095-12786114 | None:intergenic | 45.0% | |
| CTTCAGAAACCCAAAGGTTG+AGG | - | chr2_1:12786276-12786295 | Msa0195830:CDS | 45.0% | |
| GGAATTTCAGCCTCAACCTT+TGG | + | chr2_1:12786289-12786308 | None:intergenic | 45.0% | |
| AGGTTGAGGCTGAAATTCCA+TGG | - | chr2_1:12786290-12786309 | Msa0195830:CDS | 45.0% | |
| GTATTAGTTACCTGAGGACC+AGG | + | chr2_1:12786541-12786560 | None:intergenic | 45.0% | |
| TCCAAATGACTTATCTGCCC+CGG | + | chr2_1:12786670-12786689 | None:intergenic | 45.0% | |
| ACTAATGCAGAGGTTATGCC+TGG | - | chr2_1:12786750-12786769 | Msa0195830:intron | 45.0% | |
| GGAACAGAAGGAGATTTACC+TGG | + | chr2_1:12786776-12786795 | None:intergenic | 45.0% | |
| !! | TTGCAGTGGGAGTATCAAGT+TGG | - | chr2_1:12786956-12786975 | Msa0195830:intron | 45.0% |
| GCAGCTTCAATACCTACACT+AGG | + | chr2_1:12786983-12787002 | None:intergenic | 45.0% | |
| TTGAAGCTGCTGACCATATC+TGG | - | chr2_1:12786993-12787012 | Msa0195830:intron | 45.0% | |
| TGAAGCTGCTGACCATATCT+GGG | - | chr2_1:12786994-12787013 | Msa0195830:intron | 45.0% | |
| TGTACCTTGAAGCCCAGATA+TGG | + | chr2_1:12787009-12787028 | None:intergenic | 45.0% | |
| TTTAACCTTGACAGGGTGAC+TGG | - | chr2_1:12787410-12787429 | Msa0195830:CDS | 45.0% | |
| ! | ACAAAGAGCATGAGGGAAGA+TGG | - | chr2_1:12787563-12787582 | Msa0195830:intron | 45.0% |
| GAATTTATCCCTTCGCCACA+AGG | - | chr2_1:12787616-12787635 | Msa0195830:intron | 45.0% | |
| ! | AAGGTCCACATGGAAGCATA+TGG | - | chr2_1:12787635-12787654 | Msa0195830:intron | 45.0% |
| CTTCTCCATATGCTTCCATG+TGG | + | chr2_1:12787643-12787662 | None:intergenic | 45.0% | |
| ! | CACATGGAAGCATATGGAGA+AGG | - | chr2_1:12787641-12787660 | Msa0195830:intron | 45.0% |
| GGAAATGAGAGAAGGTTGAC+AGG | - | chr2_1:12787662-12787681 | Msa0195830:intron | 45.0% | |
| ATGCAGGGAATTGGTAAACG+TGG | - | chr2_1:12787820-12787839 | Msa0195830:intron | 45.0% | |
| GGAAGAGAGACTGAGAAGAA+TGG | - | chr2_1:12787859-12787878 | Msa0195830:intron | 45.0% | |
| ATTGTGGGAACCAACTCTAG+AGG | - | chr2_1:12788074-12788093 | Msa0195830:CDS | 45.0% | |
| AGCTCAGAAGCTTGCATTGA+AGG | - | chr2_1:12788110-12788129 | Msa0195830:CDS | 45.0% | |
| ! | AATGGCGTTCTAGATGGAGT+CGG | - | chr2_1:12788149-12788168 | Msa0195830:CDS | 45.0% |
| !!! | GTAAATTTTTTTTTTTTTTT+TGG | + | chr2_1:12787377-12787396 | None:intergenic | 5.0% |
| !! | ATAAATATAAATAATCTAAA+AGG | + | chr2_1:12788217-12788236 | None:intergenic | 5.0% |
| TTAGTGTCGTGTCTGGTGTC+TGG | - | chr2_1:12784964-12784983 | Msa0195830:three_prime_UTR | 50.0% | |
| TAGTGTCGTGTCTGGTGTCT+GGG | - | chr2_1:12784965-12784984 | Msa0195830:three_prime_UTR | 50.0% | |
| TCAACTCTGGCACCATCAAC+AGG | - | chr2_1:12785204-12785223 | Msa0195830:CDS | 50.0% | |
| CAACTCTGGCACCATCAACA+GGG | - | chr2_1:12785205-12785224 | Msa0195830:CDS | 50.0% | |
| ATCCCTCTGAGCTTCCTAAG+TGG | - | chr2_1:12785894-12785913 | Msa0195830:intron | 50.0% | |
| GTTCCACTTAGGAAGCTCAG+AGG | + | chr2_1:12785900-12785919 | None:intergenic | 50.0% | |
| ! | TGATGGATCTAGCACTGGAC+AGG | - | chr2_1:12785922-12785941 | Msa0195830:intron | 50.0% |
| TTCAAAGATCCTTTCCGCGG+TGG | - | chr2_1:12786078-12786097 | Msa0195830:intron | 50.0% | |
| ATGTTGTTACCACCGCGGAA+AGG | + | chr2_1:12786090-12786109 | None:intergenic | 50.0% | |
| ! | CCGCGGTGGTAACAACATTT+TGG | - | chr2_1:12786092-12786111 | Msa0195830:intron | 50.0% |
| GGTCCTTATTACTGTGGTGC+CGG | - | chr2_1:12786648-12786667 | Msa0195830:intron | 50.0% | |
| GTCCTTATTACTGTGGTGCC+GGG | - | chr2_1:12786649-12786668 | Msa0195830:intron | 50.0% | |
| ! | TCCTTATTACTGTGGTGCCG+GGG | - | chr2_1:12786650-12786669 | Msa0195830:intron | 50.0% |
| CATCAGTGGCACTAATGCAG+AGG | - | chr2_1:12786740-12786759 | Msa0195830:intron | 50.0% | |
| AGAAGGAGATTTACCTGGCC+AGG | + | chr2_1:12786771-12786790 | None:intergenic | 50.0% | |
| GTCCAACACGTTTGGTTACC+TGG | + | chr2_1:12786852-12786871 | None:intergenic | 50.0% | |
| TGTCAGGTGTCCAACACGTT+TGG | + | chr2_1:12786860-12786879 | None:intergenic | 50.0% | |
| CTGACCATATCTGGGCTTCA+AGG | - | chr2_1:12787002-12787021 | Msa0195830:CDS | 50.0% | |
| GGCTTCAAGGTACATCCTTG+AGG | - | chr2_1:12787015-12787034 | Msa0195830:CDS | 50.0% | |
| ! | AAGAGCATGAGGGAAGATGG+AGG | - | chr2_1:12787566-12787585 | Msa0195830:intron | 50.0% |
| GAGGGAAGATGGAGGATTTG+AGG | - | chr2_1:12787574-12787593 | Msa0195830:intron | 50.0% | |
| ATGCTTCCATGTGGACCTTG+TGG | + | chr2_1:12787634-12787653 | None:intergenic | 50.0% | |
| ACGTGGATGCTCAATTCGTG+TGG | - | chr2_1:12787837-12787856 | Msa0195830:intron | 50.0% | |
| CGTGGATGCTCAATTCGTGT+GGG | - | chr2_1:12787838-12787857 | Msa0195830:CDS | 50.0% | |
| CAGACGTCCAGCTTCAAACA+TGG | - | chr2_1:12788011-12788030 | Msa0195830:intron | 50.0% | |
| !! | AGAGCTTCAGCCTCTAGAGT+TGG | + | chr2_1:12788087-12788106 | None:intergenic | 50.0% |
| AGGCTGCCATGCCTAGTTAT+TGG | - | chr2_1:12788267-12788286 | Msa0195830:five_prime_UTR | 50.0% | |
| TGGCACCATCAACAGGGTTG+AGG | - | chr2_1:12785211-12785230 | Msa0195830:CDS | 55.0% | |
| AGCTCAGAGGGATGCTCAAC+AGG | + | chr2_1:12785887-12785906 | None:intergenic | 55.0% | |
| !! | TGGCCATTAGGTTGGCCTGT+TGG | - | chr2_1:12786508-12786527 | Msa0195830:intron | 55.0% |
| CCACCAACAGGCCAACCTAA+TGG | + | chr2_1:12786514-12786533 | None:intergenic | 55.0% | |
| !! | CCATTAGGTTGGCCTGTTGG+TGG | - | chr2_1:12786511-12786530 | Msa0195830:intron | 55.0% |
| GCCGGGGCAGATAAGTCATT+TGG | - | chr2_1:12786666-12786685 | Msa0195830:intron | 55.0% | |
| CACAGACACATACATCGGCC+AGG | - | chr2_1:12786831-12786850 | Msa0195830:intron | 55.0% | |
| GGCCAGGTAACCAAACGTGT+TGG | - | chr2_1:12786847-12786866 | Msa0195830:intron | 55.0% | |
| CCATTCCAGTCACCCTGTCA+AGG | + | chr2_1:12787418-12787437 | None:intergenic | 55.0% | |
| CCTTGACAGGGTGACTGGAA+TGG | - | chr2_1:12787415-12787434 | Msa0195830:CDS | 55.0% | |
| CATGTGGACCTTGTGGCGAA+GGG | + | chr2_1:12787627-12787646 | None:intergenic | 55.0% | |
| !! | TGGCCTGTTGGTGGCTATCC+TGG | - | chr2_1:12786520-12786539 | Msa0195830:intron | 60.0% |
| GGACCAGGATAGCCACCAAC+AGG | + | chr2_1:12786526-12786545 | None:intergenic | 60.0% | |
| TGGTGGCTATCCTGGTCCTC+AGG | - | chr2_1:12786528-12786547 | Msa0195830:intron | 60.0% | |
| GCCCCGGCACCACAGTAATA+AGG | + | chr2_1:12786654-12786673 | None:intergenic | 60.0% | |
| TGCAGAGGTTATGCCTGGCC+AGG | - | chr2_1:12786755-12786774 | Msa0195830:intron | 60.0% | |
| CAGGGTGACTGGAATGGTGC+AGG | - | chr2_1:12787421-12787440 | Msa0195830:intron | 60.0% | |
| CCATGTGGACCTTGTGGCGA+AGG | + | chr2_1:12787628-12787647 | None:intergenic | 60.0% | |
| CCTTCGCCACAAGGTCCACA+TGG | - | chr2_1:12787625-12787644 | Msa0195830:intron | 60.0% | |
| TGCTGCAGTCTGTGAGGAGC+TGG | - | chr2_1:12788175-12788194 | Msa0195830:CDS | 60.0% | |
| CGGCACTGCTGCAGTCTGTG+AGG | - | chr2_1:12788169-12788188 | Msa0195830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 12784895 | 12788412 | 12784895 | ID=Msa0195830;Name=Msa0195830 |
| chr2_1 | mRNA | 12784895 | 12788412 | 12784895 | ID=Msa0195830-mRNA-1;Parent=Msa0195830;Name=Msa0195830-mRNA-1;_AED=0.39;_eAED=0.39;_QI=155|0.91|0.92|1|0.91|0.84|13|242|408 |
| chr2_1 | exon | 12784895 | 12785010 | 12784895 | ID=Msa0195830-mRNA-1:exon:5638;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12785044 | 12785309 | 12785044 | ID=Msa0195830-mRNA-1:exon:5637;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12785421 | 12785481 | 12785421 | ID=Msa0195830-mRNA-1:exon:5636;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12785586 | 12785745 | 12785586 | ID=Msa0195830-mRNA-1:exon:5635;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12785846 | 12785883 | 12785846 | ID=Msa0195830-mRNA-1:exon:5634;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12785999 | 12786052 | 12785999 | ID=Msa0195830-mRNA-1:exon:5633;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12786271 | 12786345 | 12786271 | ID=Msa0195830-mRNA-1:exon:5632;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12786531 | 12786659 | 12786531 | ID=Msa0195830-mRNA-1:exon:5631;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12786758 | 12786845 | 12786758 | ID=Msa0195830-mRNA-1:exon:5630;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12786996 | 12787102 | 12786996 | ID=Msa0195830-mRNA-1:exon:5629;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12787343 | 12787435 | 12787343 | ID=Msa0195830-mRNA-1:exon:5628;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12787838 | 12787877 | 12787838 | ID=Msa0195830-mRNA-1:exon:5627;Parent=Msa0195830-mRNA-1 |
| chr2_1 | exon | 12788016 | 12788412 | 12788016 | ID=Msa0195830-mRNA-1:exon:5626;Parent=Msa0195830-mRNA-1 |
| chr2_1 | five_prime_UTR | 12788258 | 12788412 | 12788258 | ID=Msa0195830-mRNA-1:five_prime_utr;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12788016 | 12788257 | 12788016 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12787838 | 12787877 | 12787838 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12787343 | 12787435 | 12787343 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12786996 | 12787102 | 12786996 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12786758 | 12786845 | 12786758 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12786531 | 12786659 | 12786531 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12786271 | 12786345 | 12786271 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12785999 | 12786052 | 12785999 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12785846 | 12785883 | 12785846 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12785586 | 12785745 | 12785586 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12785421 | 12785481 | 12785421 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | CDS | 12785170 | 12785309 | 12785170 | ID=Msa0195830-mRNA-1:cds;Parent=Msa0195830-mRNA-1 |
| chr2_1 | three_prime_UTR | 12785044 | 12785169 | 12785044 | ID=Msa0195830-mRNA-1:three_prime_utr;Parent=Msa0195830-mRNA-1 |
| chr2_1 | three_prime_UTR | 12784895 | 12785010 | 12784895 | ID=Msa0195830-mRNA-1:three_prime_utr;Parent=Msa0195830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
