AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072850 MtrunA17_Chr7g0255661 95.506 267 4 1 1 267 1 259 0.0 512
Msa1072850 MtrunA17_Chr3g0125881 31.707 164 91 6 108 267 121 267 1.09e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072850 AT3G56650.1 74.380 242 60 2 28 267 21 262 2.75e-129 367
Msa1072850 AT1G77090.1 31.098 164 92 6 108 267 113 259 4.56e-19 84.3

Find 71 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCATGGCTCTGCACATTT+TGG 0.188022 7_2:-70079849 None:intergenic
CCCTTCAAGAATTCTCTTCT+TGG 0.220023 7_2:-70079503 None:intergenic
AACAGAAAACTAAACTTTAA+AGG 0.234300 7_2:-70080941 None:intergenic
GTGCTTTGGAAGTGAGTTTC+AGG 0.256242 7_2:-70079479 None:intergenic
TCCGAAGCTGTTTCCATGTT+GGG 0.295637 7_2:-70079794 None:intergenic
TCCACTGATCAATCAGAAAA+TGG 0.298697 7_2:+70079346 Msa1072850:exon
GAAACTCCATATGCTCTTAC+TGG 0.304540 7_2:+70080802 Msa1072850:CDS
ATCTGGATCTAAAGTGTTTC+CGG 0.321003 7_2:-70080015 None:intergenic
AATTGTTGCATTTGGTTTGT+TGG 0.333981 7_2:-70079940 None:intergenic
CGAAGGGCAGGAGTATCTTT+AGG 0.356398 7_2:-70079653 None:intergenic
GAAGCCTCGAGGAGCTCATC+TGG 0.366026 7_2:-70080032 None:intergenic
ATTCTCTTCTTGGTGTGCTT+TGG 0.366749 7_2:-70079493 None:intergenic
ATGTCCTCAATTGTTGCATT+TGG 0.371030 7_2:-70079948 None:intergenic
TTGCATTTGGTTTGTTGGTT+AGG 0.381877 7_2:-70079935 None:intergenic
CGGATAGCTAACATACTATC+AGG 0.410990 7_2:+70079813 Msa1072850:CDS
AGTTTGCCACTGCTTGTCAT+TGG 0.423778 7_2:-70080887 None:intergenic
TTATTAAGCAAGAGTTGTAT+TGG 0.431800 7_2:+70081029 Msa1072850:three_prime_UTR
TGTGAACCAGTAAGAGCATA+TGG 0.439225 7_2:-70080808 None:intergenic
ACAACTCTTGCTTAATAATC+CGG 0.452523 7_2:-70081024 None:intergenic
ATCCGAAGCTGTTTCCATGT+TGG 0.463719 7_2:-70079795 None:intergenic
AAAGTGTTTCCGGTGACAAA+TGG 0.467671 7_2:-70080005 None:intergenic
ATGCAACAATTGAGGACATC+GGG 0.486193 7_2:+70079952 Msa1072850:CDS
ATGAAGTTGTGAATGGGAAA+AGG 0.490618 7_2:-70079388 None:intergenic
AATGGGAAAAGGGAGGTGAA+TGG 0.499776 7_2:-70079377 None:intergenic
CCCCAACATGGAAACAGCTT+CGG 0.500004 7_2:+70079793 Msa1072850:CDS
GTAGTTGATGAAGTTGTGAA+TGG 0.502381 7_2:-70079395 None:intergenic
GAAGGGTCTGATGAAGAAGG+AGG 0.509528 7_2:-70079608 None:intergenic
CTTGCAAAAGCAACAGCAAA+GGG 0.514105 7_2:+70080835 Msa1072850:CDS
ACCAAAATGTGCAGAGCCAT+GGG 0.517062 7_2:+70079848 Msa1072850:CDS
AAGGGTCTGATGAAGAAGGA+GGG 0.521617 7_2:-70079607 None:intergenic
GCTTTGAAGAGAACAAAAGA+AGG 0.522695 7_2:-70079626 None:intergenic
AACCAAAATGTGCAGAGCCA+TGG 0.527719 7_2:+70079847 Msa1072850:CDS
CCGAAGCTGTTTCCATGTTG+GGG 0.529262 7_2:-70079793 None:intergenic
GATACTCCTGCCCTTCGTGC+TGG 0.532133 7_2:+70079659 Msa1072850:CDS
CAAACCAAATGCAACAATTG+AGG 0.532140 7_2:+70079944 Msa1072850:CDS
AATGTACCAGCACGAAGGGC+AGG 0.538174 7_2:-70079665 None:intergenic
TGGAATGTGTGAAGGAAGGA+AGG 0.543339 7_2:-70079327 None:intergenic
ATGTGCAGAGCCATGGGTCG+AGG 0.546349 7_2:+70079854 Msa1072850:CDS
GAAATGGTGAGAGCTTTGAA+TGG 0.552256 7_2:-70079421 None:intergenic
ACCAAGAAGAGAATTCTTGA+AGG 0.556299 7_2:+70079502 Msa1072850:CDS
TGAAGTTGTGAATGGGAAAA+GGG 0.559321 7_2:-70079387 None:intergenic
TCTCTCGGTCCATTTGTCAC+CGG 0.560247 7_2:+70079996 Msa1072850:CDS
TCAAATTTAACCTCGACCCA+TGG 0.563391 7_2:-70079864 None:intergenic
TCTTGCAAAAGCAACAGCAA+AGG 0.565478 7_2:+70080834 Msa1072850:CDS
TTGTTGGTTAGGCGTATCAA+AGG 0.567096 7_2:-70079924 None:intergenic
CAAGCTAGAGAAGTTTCAGT+TGG 0.578431 7_2:+70079575 Msa1072850:CDS
AAAGAAGGGTCTGATGAAGA+AGG 0.592068 7_2:-70079611 None:intergenic
ACTTCTCTAGCTTGTGACTG+TGG 0.595522 7_2:-70079566 None:intergenic
AAATGGTGAGAGCTTTGAAT+GGG 0.595936 7_2:-70079420 None:intergenic
AATCAATGTACCAGCACGAA+GGG 0.598231 7_2:-70079669 None:intergenic
AACTTTAAAGGAATCAAGCA+TGG 0.601558 7_2:-70080929 None:intergenic
CGAAGCTGTTTCCATGTTGG+GGG 0.605438 7_2:-70079792 None:intergenic
GGTCTGATGAAGAAGGAGGG+AGG 0.608012 7_2:-70079604 None:intergenic
TAGTTGATGAAGTTGTGAAT+GGG 0.614272 7_2:-70079394 None:intergenic
AGGAACTGAGACAGAAGCAG+AGG 0.618479 7_2:-70079459 None:intergenic
GAAAAGCTTATCGCTTCTCT+CGG 0.619390 7_2:+70079981 Msa1072850:CDS
TCTCTAGCTTGTGACTGTGG+TGG 0.623327 7_2:-70079563 None:intergenic
TCAGTGGAATGTGTGAAGGA+AGG 0.624428 7_2:-70079331 None:intergenic
AATGCAACAATTGAGGACAT+CGG 0.624867 7_2:+70079951 Msa1072850:CDS
TGAAAAGATTGATGATCAGA+CGG 0.625680 7_2:+70080058 Msa1072850:CDS
CCAAGAAGAGAATTCTTGAA+GGG 0.629087 7_2:+70079503 Msa1072850:CDS
GGAATGTGTGAAGGAAGGAA+GGG 0.630465 7_2:-70079326 None:intergenic
CTTTGAAGAGAACAAAAGAA+GGG 0.632727 7_2:-70079625 None:intergenic
CTAGTGCCAATGACAAGCAG+TGG 0.640793 7_2:+70080881 Msa1072850:CDS
ACTTCAAGGACATAAGCAGA+AGG 0.642950 7_2:-70080989 None:intergenic
CAATCAATGTACCAGCACGA+AGG 0.662156 7_2:-70079670 None:intergenic
TTGATCAGTGGAATGTGTGA+AGG 0.681598 7_2:-70079335 None:intergenic
TGTGAAGGAAGGAAGGGACA+AGG 0.686340 7_2:-70079320 None:intergenic
GGTTCTGTGAGAGCAATAAG+TGG 0.687982 7_2:-70079542 None:intergenic
AGATCCAGATGAGCTCCTCG+AGG 0.689017 7_2:+70080028 Msa1072850:CDS
AGTTGTGAATGGGAAAAGGG+AGG 0.723640 7_2:-70079384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAGTTCAAATATAA+CGG + chr7_2:70080544-70080563 Msa1072850:intron 15.0%
!! AAAACTTAGTTCAAATATAA+CGG + chr7_2:70080544-70080563 Msa1072850:intron 15.0%
!! AAATTTGAAGATGAAAAACA+AGG + chr7_2:70079879-70079898 Msa1072850:CDS 20.0%
!! AGTGGTATTATTATAGAAAA+TGG + chr7_2:70080180-70080199 Msa1072850:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG + chr7_2:70080181-70080200 Msa1072850:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG - chr7_2:70080221-70080240 None:intergenic 20.0%
!! TAACTAACATGACTAAAAAA+TGG + chr7_2:70080752-70080771 Msa1072850:intron 20.0%
!! AACAGAAAACTAAACTTTAA+AGG - chr7_2:70080944-70080963 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG + chr7_2:70080949-70080968 Msa1072850:exon 20.0%
!!! TTGAAGTTTTTTGTTTATAC+CGG + chr7_2:70081005-70081024 Msa1072850:three_prime_UTR 20.0%
!! AGATCAAAAAAATTCAAATG+GGG - chr7_2:70081056-70081075 None:intergenic 20.0%
!! CAGATCAAAAAAATTCAAAT+GGG - chr7_2:70081057-70081076 None:intergenic 20.0%
!! TCAGATCAAAAAAATTCAAA+TGG - chr7_2:70081058-70081077 None:intergenic 20.0%
!! AAATTTGAAGATGAAAAACA+AGG + chr7_2:70079879-70079898 Msa1072850:CDS 20.0%
!! AGTGGTATTATTATAGAAAA+TGG + chr7_2:70080180-70080199 Msa1072850:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG + chr7_2:70080181-70080200 Msa1072850:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG - chr7_2:70080221-70080240 None:intergenic 20.0%
!! TAACTAACATGACTAAAAAA+TGG + chr7_2:70080752-70080771 Msa1072850:intron 20.0%
!! AACAGAAAACTAAACTTTAA+AGG - chr7_2:70080944-70080963 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG + chr7_2:70080949-70080968 Msa1072850:exon 20.0%
!!! TTGAAGTTTTTTGTTTATAC+CGG + chr7_2:70081005-70081024 Msa1072850:three_prime_UTR 20.0%
!! AGATCAAAAAAATTCAAATG+GGG - chr7_2:70081056-70081075 None:intergenic 20.0%
!! CAGATCAAAAAAATTCAAAT+GGG - chr7_2:70081057-70081076 None:intergenic 20.0%
!! TCAGATCAAAAAAATTCAAA+TGG - chr7_2:70081058-70081077 None:intergenic 20.0%
!! ATCACATCATATTTTCACAA+TGG + chr7_2:70079264-70079283 Msa1072850:five_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG + chr7_2:70079270-70079289 Msa1072850:five_prime_UTR 25.0%
!!! GGTTCAATGTTGATTTTTTT+TGG - chr7_2:70079302-70079321 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG + chr7_2:70079890-70079909 Msa1072850:CDS 25.0%
! ATGTAAATGTTATCTGTTGT+TGG + chr7_2:70080719-70080738 Msa1072850:intron 25.0%
! GGTATAAACAAAAAACTTCA+AGG - chr7_2:70081006-70081025 None:intergenic 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG + chr7_2:70081029-70081048 Msa1072850:three_prime_UTR 25.0%
!! ATCACATCATATTTTCACAA+TGG + chr7_2:70079264-70079283 Msa1072850:five_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG + chr7_2:70079270-70079289 Msa1072850:five_prime_UTR 25.0%
!!! GGTTCAATGTTGATTTTTTT+TGG - chr7_2:70079302-70079321 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG + chr7_2:70079890-70079909 Msa1072850:CDS 25.0%
! ATGTAAATGTTATCTGTTGT+TGG + chr7_2:70080719-70080738 Msa1072850:intron 25.0%
! GGTATAAACAAAAAACTTCA+AGG - chr7_2:70081006-70081025 None:intergenic 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG + chr7_2:70081029-70081048 Msa1072850:three_prime_UTR 25.0%
!! TAGTTGATGAAGTTGTGAAT+GGG - chr7_2:70079397-70079416 None:intergenic 30.0%
! CTTTGAAGAGAACAAAAGAA+GGG - chr7_2:70079628-70079647 None:intergenic 30.0%
!! GTCTATATTTAGTTCTTTGC+AGG + chr7_2:70079741-70079760 Msa1072850:intron 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG - chr7_2:70079943-70079962 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG + chr7_2:70080058-70080077 Msa1072850:CDS 30.0%
ATAGTCTGATAGAAATCAAG+TGG + chr7_2:70080162-70080181 Msa1072850:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG + chr7_2:70080361-70080380 Msa1072850:intron 30.0%
AACTTGTAAATTAGGAGGAT+TGG - chr7_2:70080573-70080592 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG - chr7_2:70080646-70080665 None:intergenic 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG + chr7_2:70080858-70080877 Msa1072850:CDS 30.0%
! AACTTTAAAGGAATCAAGCA+TGG - chr7_2:70080932-70080951 None:intergenic 30.0%
ACAACTCTTGCTTAATAATC+CGG - chr7_2:70081027-70081046 None:intergenic 30.0%
!! TAGTTGATGAAGTTGTGAAT+GGG - chr7_2:70079397-70079416 None:intergenic 30.0%
! CTTTGAAGAGAACAAAAGAA+GGG - chr7_2:70079628-70079647 None:intergenic 30.0%
!! GTCTATATTTAGTTCTTTGC+AGG + chr7_2:70079741-70079760 Msa1072850:intron 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG - chr7_2:70079943-70079962 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG + chr7_2:70080058-70080077 Msa1072850:CDS 30.0%
ATAGTCTGATAGAAATCAAG+TGG + chr7_2:70080162-70080181 Msa1072850:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG + chr7_2:70080361-70080380 Msa1072850:intron 30.0%
AACTTGTAAATTAGGAGGAT+TGG - chr7_2:70080573-70080592 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG - chr7_2:70080646-70080665 None:intergenic 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG + chr7_2:70080858-70080877 Msa1072850:CDS 30.0%
! AACTTTAAAGGAATCAAGCA+TGG - chr7_2:70080932-70080951 None:intergenic 30.0%
ACAACTCTTGCTTAATAATC+CGG - chr7_2:70081027-70081046 None:intergenic 30.0%
TCCACTGATCAATCAGAAAA+TGG + chr7_2:70079346-70079365 Msa1072850:exon 35.0%
TGAAGTTGTGAATGGGAAAA+GGG - chr7_2:70079390-70079409 None:intergenic 35.0%
ATGAAGTTGTGAATGGGAAA+AGG - chr7_2:70079391-70079410 None:intergenic 35.0%
!! GTAGTTGATGAAGTTGTGAA+TGG - chr7_2:70079398-70079417 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG - chr7_2:70079423-70079442 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG - chr7_2:70079440-70079459 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG + chr7_2:70079502-70079521 Msa1072850:CDS 35.0%
CCAAGAAGAGAATTCTTGAA+GGG + chr7_2:70079503-70079522 Msa1072850:CDS 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG - chr7_2:70079629-70079648 None:intergenic 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG + chr7_2:70079896-70079915 Msa1072850:CDS 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG - chr7_2:70079938-70079957 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG + chr7_2:70079944-70079963 Msa1072850:CDS 35.0%
ATGTCCTCAATTGTTGCATT+TGG - chr7_2:70079951-70079970 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG + chr7_2:70079951-70079970 Msa1072850:CDS 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG - chr7_2:70080018-70080037 None:intergenic 35.0%
CAACGGTTAATCACGAAATT+CGG + chr7_2:70080444-70080463 Msa1072850:intron 35.0%
GGGTAAACTTGTAAATTAGG+AGG - chr7_2:70080578-70080597 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG - chr7_2:70080581-70080600 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG - chr7_2:70080680-70080699 None:intergenic 35.0%
!!! CCTGCTCTCATCATTTTTTT+GGG + chr7_2:70080678-70080697 Msa1072850:intron 35.0%
TTACATTTCAAGCAGCAGTT+TGG - chr7_2:70080705-70080724 None:intergenic 35.0%
TCCACTGATCAATCAGAAAA+TGG + chr7_2:70079346-70079365 Msa1072850:exon 35.0%
TGAAGTTGTGAATGGGAAAA+GGG - chr7_2:70079390-70079409 None:intergenic 35.0%
ATGAAGTTGTGAATGGGAAA+AGG - chr7_2:70079391-70079410 None:intergenic 35.0%
!! GTAGTTGATGAAGTTGTGAA+TGG - chr7_2:70079398-70079417 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG - chr7_2:70079423-70079442 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG - chr7_2:70079440-70079459 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG + chr7_2:70079502-70079521 Msa1072850:CDS 35.0%
CCAAGAAGAGAATTCTTGAA+GGG + chr7_2:70079503-70079522 Msa1072850:CDS 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG - chr7_2:70079629-70079648 None:intergenic 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG + chr7_2:70079896-70079915 Msa1072850:CDS 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG - chr7_2:70079938-70079957 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG + chr7_2:70079944-70079963 Msa1072850:CDS 35.0%
ATGTCCTCAATTGTTGCATT+TGG - chr7_2:70079951-70079970 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG + chr7_2:70079951-70079970 Msa1072850:CDS 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG - chr7_2:70080018-70080037 None:intergenic 35.0%
CAACGGTTAATCACGAAATT+CGG + chr7_2:70080444-70080463 Msa1072850:intron 35.0%
GGGTAAACTTGTAAATTAGG+AGG - chr7_2:70080578-70080597 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG - chr7_2:70080581-70080600 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG - chr7_2:70080680-70080699 None:intergenic 35.0%
!!! CCTGCTCTCATCATTTTTTT+GGG + chr7_2:70080678-70080697 Msa1072850:intron 35.0%
TTACATTTCAAGCAGCAGTT+TGG - chr7_2:70080705-70080724 None:intergenic 35.0%
TTGATCAGTGGAATGTGTGA+AGG - chr7_2:70079338-70079357 None:intergenic 40.0%
!! GCCATTTTCTGATTGATCAG+TGG - chr7_2:70079350-70079369 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG - chr7_2:70079424-70079443 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGCTT+TGG - chr7_2:70079496-70079515 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG - chr7_2:70079506-70079525 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG + chr7_2:70079575-70079594 Msa1072850:CDS 40.0%
AAAGAAGGGTCTGATGAAGA+AGG - chr7_2:70079614-70079633 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG - chr7_2:70079672-70079691 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG + chr7_2:70079813-70079832 Msa1072850:CDS 40.0%
TCAAATTTAACCTCGACCCA+TGG - chr7_2:70079867-70079886 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG - chr7_2:70079927-70079946 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG + chr7_2:70079952-70079971 Msa1072850:CDS 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG - chr7_2:70079980-70079999 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG - chr7_2:70079981-70080000 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG + chr7_2:70079981-70080000 Msa1072850:CDS 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG - chr7_2:70080008-70080027 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG - chr7_2:70080265-70080284 None:intergenic 40.0%
! ATAAACGCACAAGAGCACAA+CGG + chr7_2:70080427-70080446 Msa1072850:intron 40.0%
TACAACAGTCACTCTGTTGT+CGG - chr7_2:70080487-70080506 None:intergenic 40.0%
GACAAACACTCGAACATAGT+GGG - chr7_2:70080624-70080643 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG + chr7_2:70080677-70080696 Msa1072850:intron 40.0%
CCCAAAAAAATGATGAGAGC+AGG - chr7_2:70080681-70080700 None:intergenic 40.0%
GAAACTCCATATGCTCTTAC+TGG + chr7_2:70080802-70080821 Msa1072850:CDS 40.0%
! TGTGAACCAGTAAGAGCATA+TGG - chr7_2:70080811-70080830 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG + chr7_2:70080834-70080853 Msa1072850:CDS 40.0%
CTTGCAAAAGCAACAGCAAA+GGG + chr7_2:70080835-70080854 Msa1072850:CDS 40.0%
ACTTCAAGGACATAAGCAGA+AGG - chr7_2:70080992-70081011 None:intergenic 40.0%
TTGATCAGTGGAATGTGTGA+AGG - chr7_2:70079338-70079357 None:intergenic 40.0%
!! GCCATTTTCTGATTGATCAG+TGG - chr7_2:70079350-70079369 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG - chr7_2:70079424-70079443 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGCTT+TGG - chr7_2:70079496-70079515 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG - chr7_2:70079506-70079525 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG + chr7_2:70079575-70079594 Msa1072850:CDS 40.0%
AAAGAAGGGTCTGATGAAGA+AGG - chr7_2:70079614-70079633 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG - chr7_2:70079672-70079691 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG + chr7_2:70079813-70079832 Msa1072850:CDS 40.0%
TCAAATTTAACCTCGACCCA+TGG - chr7_2:70079867-70079886 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG - chr7_2:70079927-70079946 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG + chr7_2:70079952-70079971 Msa1072850:CDS 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG - chr7_2:70079980-70079999 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG - chr7_2:70079981-70080000 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG + chr7_2:70079981-70080000 Msa1072850:CDS 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG - chr7_2:70080008-70080027 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG - chr7_2:70080265-70080284 None:intergenic 40.0%
! ATAAACGCACAAGAGCACAA+CGG + chr7_2:70080427-70080446 Msa1072850:intron 40.0%
TACAACAGTCACTCTGTTGT+CGG - chr7_2:70080487-70080506 None:intergenic 40.0%
GACAAACACTCGAACATAGT+GGG - chr7_2:70080624-70080643 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG + chr7_2:70080677-70080696 Msa1072850:intron 40.0%
CCCAAAAAAATGATGAGAGC+AGG - chr7_2:70080681-70080700 None:intergenic 40.0%
GAAACTCCATATGCTCTTAC+TGG + chr7_2:70080802-70080821 Msa1072850:CDS 40.0%
! TGTGAACCAGTAAGAGCATA+TGG - chr7_2:70080811-70080830 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG + chr7_2:70080834-70080853 Msa1072850:CDS 40.0%
CTTGCAAAAGCAACAGCAAA+GGG + chr7_2:70080835-70080854 Msa1072850:CDS 40.0%
ACTTCAAGGACATAAGCAGA+AGG - chr7_2:70080992-70081011 None:intergenic 40.0%
GGAATGTGTGAAGGAAGGAA+GGG - chr7_2:70079329-70079348 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG - chr7_2:70079330-70079349 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG - chr7_2:70079334-70079353 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG - chr7_2:70079380-70079399 None:intergenic 45.0%
AGTTGTGAATGGGAAAAGGG+AGG - chr7_2:70079387-70079406 None:intergenic 45.0%
!! GTGCTTTGGAAGTGAGTTTC+AGG - chr7_2:70079482-70079501 None:intergenic 45.0%
GGTTCTGTGAGAGCAATAAG+TGG - chr7_2:70079545-70079564 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG - chr7_2:70079569-70079588 None:intergenic 45.0%
AAGGGTCTGATGAAGAAGGA+GGG - chr7_2:70079610-70079629 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG - chr7_2:70079673-70079692 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG - chr7_2:70079797-70079816 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG - chr7_2:70079798-70079817 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG + chr7_2:70079847-70079866 Msa1072850:CDS 45.0%
ACCAAAATGTGCAGAGCCAT+GGG + chr7_2:70079848-70079867 Msa1072850:CDS 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG - chr7_2:70080046-70080065 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG + chr7_2:70080246-70080265 Msa1072850:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG - chr7_2:70080258-70080277 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG + chr7_2:70080257-70080276 Msa1072850:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG + chr7_2:70080258-70080277 Msa1072850:intron 45.0%
GGACAAACACTCGAACATAG+TGG - chr7_2:70080625-70080644 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG - chr7_2:70080890-70080909 None:intergenic 45.0%
GGAATGTGTGAAGGAAGGAA+GGG - chr7_2:70079329-70079348 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG - chr7_2:70079330-70079349 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG - chr7_2:70079334-70079353 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG - chr7_2:70079380-70079399 None:intergenic 45.0%
AGTTGTGAATGGGAAAAGGG+AGG - chr7_2:70079387-70079406 None:intergenic 45.0%
!! GTGCTTTGGAAGTGAGTTTC+AGG - chr7_2:70079482-70079501 None:intergenic 45.0%
GGTTCTGTGAGAGCAATAAG+TGG - chr7_2:70079545-70079564 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG - chr7_2:70079569-70079588 None:intergenic 45.0%
AAGGGTCTGATGAAGAAGGA+GGG - chr7_2:70079610-70079629 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG - chr7_2:70079673-70079692 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG - chr7_2:70079797-70079816 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG - chr7_2:70079798-70079817 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG + chr7_2:70079847-70079866 Msa1072850:CDS 45.0%
ACCAAAATGTGCAGAGCCAT+GGG + chr7_2:70079848-70079867 Msa1072850:CDS 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG - chr7_2:70080046-70080065 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG + chr7_2:70080246-70080265 Msa1072850:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG - chr7_2:70080258-70080277 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG + chr7_2:70080257-70080276 Msa1072850:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG + chr7_2:70080258-70080277 Msa1072850:intron 45.0%
GGACAAACACTCGAACATAG+TGG - chr7_2:70080625-70080644 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG - chr7_2:70080890-70080909 None:intergenic 45.0%
!!! TTTTTTTTTTTTTAAGTATT+TGG - chr7_2:70081193-70081212 None:intergenic 5.0%
!!! TTTTTTTTTTTTTAAGTATT+TGG - chr7_2:70081193-70081212 None:intergenic 5.0%
TGTGAAGGAAGGAAGGGACA+AGG - chr7_2:70079323-70079342 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG - chr7_2:70079462-70079481 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG - chr7_2:70079566-70079585 None:intergenic 50.0%
GAAGGGTCTGATGAAGAAGG+AGG - chr7_2:70079611-70079630 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG - chr7_2:70079656-70079675 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG - chr7_2:70079782-70079801 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG + chr7_2:70079781-70079800 Msa1072850:CDS 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG - chr7_2:70079795-70079814 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG - chr7_2:70079796-70079815 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG + chr7_2:70079793-70079812 Msa1072850:CDS 50.0%
!! ACCCATGGCTCTGCACATTT+TGG - chr7_2:70079852-70079871 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG + chr7_2:70079996-70080015 Msa1072850:CDS 50.0%
CCCTCAGCATAACCTATGGT+AGG - chr7_2:70080261-70080280 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG + chr7_2:70080592-70080611 Msa1072850:intron 50.0%
TACCCCTGAACTGTACGTCA+GGG + chr7_2:70080593-70080612 Msa1072850:intron 50.0%
AACCCCTGACGTACAGTTCA+GGG - chr7_2:70080599-70080618 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG + chr7_2:70080881-70080900 Msa1072850:CDS 50.0%
TGTGAAGGAAGGAAGGGACA+AGG - chr7_2:70079323-70079342 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG - chr7_2:70079462-70079481 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG - chr7_2:70079566-70079585 None:intergenic 50.0%
GAAGGGTCTGATGAAGAAGG+AGG - chr7_2:70079611-70079630 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG - chr7_2:70079656-70079675 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG - chr7_2:70079782-70079801 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG + chr7_2:70079781-70079800 Msa1072850:CDS 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG - chr7_2:70079795-70079814 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG - chr7_2:70079796-70079815 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG + chr7_2:70079793-70079812 Msa1072850:CDS 50.0%
!! ACCCATGGCTCTGCACATTT+TGG - chr7_2:70079852-70079871 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG + chr7_2:70079996-70080015 Msa1072850:CDS 50.0%
CCCTCAGCATAACCTATGGT+AGG - chr7_2:70080261-70080280 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG + chr7_2:70080592-70080611 Msa1072850:intron 50.0%
TACCCCTGAACTGTACGTCA+GGG + chr7_2:70080593-70080612 Msa1072850:intron 50.0%
AACCCCTGACGTACAGTTCA+GGG - chr7_2:70080599-70080618 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG + chr7_2:70080881-70080900 Msa1072850:CDS 50.0%
GGTCTGATGAAGAAGGAGGG+AGG - chr7_2:70079607-70079626 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG - chr7_2:70079668-70079687 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG - chr7_2:70079777-70079796 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG - chr7_2:70079791-70079810 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG + chr7_2:70080028-70080047 Msa1072850:CDS 55.0%
ACCCCTGAACTGTACGTCAG+GGG + chr7_2:70080594-70080613 Msa1072850:intron 55.0%
ACCCCTGACGTACAGTTCAG+GGG - chr7_2:70080598-70080617 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG - chr7_2:70080600-70080619 None:intergenic 55.0%
GGTCTGATGAAGAAGGAGGG+AGG - chr7_2:70079607-70079626 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG - chr7_2:70079668-70079687 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG - chr7_2:70079777-70079796 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG - chr7_2:70079791-70079810 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG + chr7_2:70080028-70080047 Msa1072850:CDS 55.0%
ACCCCTGAACTGTACGTCAG+GGG + chr7_2:70080594-70080613 Msa1072850:intron 55.0%
ACCCCTGACGTACAGTTCAG+GGG - chr7_2:70080598-70080617 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG - chr7_2:70080600-70080619 None:intergenic 55.0%
GATACTCCTGCCCTTCGTGC+TGG + chr7_2:70079659-70079678 Msa1072850:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG + chr7_2:70079854-70079873 Msa1072850:CDS 60.0%
GAAGCCTCGAGGAGCTCATC+TGG - chr7_2:70080035-70080054 None:intergenic 60.0%
GATACTCCTGCCCTTCGTGC+TGG + chr7_2:70079659-70079678 Msa1072850:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG + chr7_2:70079854-70079873 Msa1072850:CDS 60.0%
GAAGCCTCGAGGAGCTCATC+TGG - chr7_2:70080035-70080054 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70079262 70081269 70079262 ID=Msa1072850;Name=Msa1072850
chr7_2 mRNA 70079262 70081269 70079262 ID=Msa1072850-mRNA-1;Parent=Msa1072850;Name=Msa1072850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|3|315|267
chr7_2 exon 70079262 70079680 70079262 ID=Msa1072850-mRNA-1:exon:15651;Parent=Msa1072850-mRNA-1
chr7_2 exon 70079763 70080079 70079763 ID=Msa1072850-mRNA-1:exon:15652;Parent=Msa1072850-mRNA-1
chr7_2 exon 70080784 70081269 70080784 ID=Msa1072850-mRNA-1:exon:15653;Parent=Msa1072850-mRNA-1
chr7_2 five_prime_UTR 70079262 70079364 70079262 ID=Msa1072850-mRNA-1:five_prime_utr;Parent=Msa1072850-mRNA-1
chr7_2 CDS 70079365 70079680 70079365 ID=Msa1072850-mRNA-1:cds;Parent=Msa1072850-mRNA-1
chr7_2 CDS 70079763 70080079 70079763 ID=Msa1072850-mRNA-1:cds;Parent=Msa1072850-mRNA-1
chr7_2 CDS 70080784 70080954 70080784 ID=Msa1072850-mRNA-1:cds;Parent=Msa1072850-mRNA-1
chr7_2 three_prime_UTR 70080955 70081269 70080955 ID=Msa1072850-mRNA-1:three_prime_utr;Parent=Msa1072850-mRNA-1
Gene Sequence

>Msa1072850

ATGGCAACTTCTCCATTCACCTCCCTTTTCCCATTCACAACTTCATCAACTACATCCCATTCAAAGCTCTCACCATTTCGTGCATTCATAAAAGCCTCTGCTTCTGTCTCAGTTCCTGAAACTCACTTCCAAAGCACACCAAGAAGAGAATTCTTGAAGGGTATTGCTCTTTCACTACCACTTATTGCTCTCACAGAACCACCACAGTCACAAGCTAGAGAAGTTTCAGTTGGCTCTTTCCTCCCTCCTTCTTCATCAGACCCTTCTTTTGTTCTCTTCAAAGCTTCTCCTAAAGATACTCCTGCCCTTCGTGCTGGAAATGTGCAGCCATACCAGTTCATCCTTCCCCCAACATGGAAACAGCTTCGGATAGCTAACATACTATCAGGAAACTACTGTCAACCAAAATGTGCAGAGCCATGGGTCGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTTGTGGCTTCACCTTTGATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATCGGGAGCCCAGAAAAGCTTATCGCTTCTCTCGGTCCATTTGTCACCGGAAACACTTTAGATCCAGATGAGCTCCTCGAGGCTTCAGTTGAAAAGATTGATGATCAGACGTATTACAAATATGTGCTTGAAACTCCATATGCTCTTACTGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGATTCTAAAGACCATGCTTGATTCCTTTAAAGTTTAG

Protein sequence

>Msa1072850

MATSPFTSLFPFTTSSTTSHSKLSPFRAFIKASASVSVPETHFQSTPRREFLKGIALSLPLIALTEPPQSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTSEKILKTMLDSFKV*