AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538020 MtrunA17_Chr4g0000321 89.247 279 22 3 1 278 1 272 3.19e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538020 AT2G46910.1 70.356 253 68 3 32 277 30 282 3.36e-123 353

Find 80 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATCTGAGTTATT+TGG 0.204203 4_1:-17117793 Msa0538020:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 4_1:-17117775 Msa0538020:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 4_1:+17120346 None:intergenic
GGAATTACCTCAAACAAATT+AGG 0.299344 4_1:+17120071 None:intergenic
ATAATGTGTTCTTTAATTGC+TGG 0.306537 4_1:+17117393 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 4_1:+17118730 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 4_1:-17117634 Msa0538020:three_prime_UTR
GGAATTCTCATCATTGTATA+AGG 0.343085 4_1:-17117567 Msa0538020:three_prime_UTR
TCTACAGTTACAATGTTAAT+AGG 0.350096 4_1:-17120732 Msa0538020:CDS
AGAGTCCTCTTTGTGTGTCT+TGG 0.357425 4_1:+17120515 None:intergenic
AAAGATCGTGGTAGTATTGC+TGG 0.362518 4_1:+17118220 None:intergenic
CAATTTCCCGTGAGGGATCC+TGG 0.375960 4_1:-17117917 Msa0538020:CDS
CACCACTATGCATTAATAAT+AGG 0.383426 4_1:-17120768 Msa0538020:CDS
TAAGCTTCTCGTTCCTTCTC+TGG 0.384382 4_1:+17120846 None:intergenic
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 4_1:-17117753 Msa0538020:CDS
CTTAGCTGGAGAAATGGATT+TGG 0.391494 4_1:-17120827 Msa0538020:exon
GAGAATTCCTTGTGGACTAT+AGG 0.398323 4_1:+17117581 None:intergenic
CATTGTAACTGTAGAGTGTA+TGG 0.400357 4_1:+17120740 None:intergenic
GAGAAGCTTAGCTGGAGAAA+TGG 0.406417 4_1:-17120833 Msa0538020:exon
CCATCATATATATACCTTCC+AGG 0.410693 4_1:+17117899 None:intergenic
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 4_1:-17117756 Msa0538020:CDS
GAGCATTCCTAATTTGTTTG+AGG 0.430425 4_1:-17120078 Msa0538020:intron
TGGAAGAGAATGAGAACATC+AGG 0.437458 4_1:+17120292 None:intergenic
GAAGGAACGAGAAGCTTAGC+TGG 0.437786 4_1:-17120841 Msa0538020:five_prime_UTR
TCTTCAACGTTCTTCTATTG+AGG 0.448829 4_1:-17120482 Msa0538020:CDS
CCAACTTGTTAAAATCAATT+GGG 0.453481 4_1:+17120347 None:intergenic
TTAACAAGTTGGATGGAACT+TGG 0.462758 4_1:-17120336 Msa0538020:CDS
ATAAGGCAATAATATGCTAT+TGG 0.468591 4_1:-17117550 Msa0538020:three_prime_UTR
CTCCTATTATTAATGCATAG+TGG 0.475506 4_1:+17120766 None:intergenic
GACCGATACAAGAGTGAACT+TGG 0.486559 4_1:+17118752 None:intergenic
CACTCGATAAGCCGTGGTTG+AGG 0.492755 4_1:-17117640 Msa0538020:three_prime_UTR
GGATACAGTACTTGAAAGAA+AGG 0.499312 4_1:+17120253 None:intergenic
AGATTGCATAGCCATGGAAA+TGG 0.503286 4_1:+17120696 None:intergenic
TGGTTGAGGAATTGGACATA+TGG 0.507094 4_1:-17117626 Msa0538020:three_prime_UTR
CAAAGAACGCCGCGAGCGTA+AGG 0.511895 4_1:-17120875 Msa0538020:five_prime_UTR
TTATTCGCAATGTTGTCCGC+TGG 0.516151 4_1:-17120100 Msa0538020:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 4_1:-17117924 Msa0538020:CDS
AAATATTAGTGAACAACTGC+AGG 0.525549 4_1:-17118254 Msa0538020:CDS
TATGCAATCTGCTGTTACCC+AGG 0.526237 4_1:-17120683 Msa0538020:intron
ATTGCGAATAACACCTCCAT+TGG 0.531951 4_1:+17120112 None:intergenic
AAGGAAGATTAGCAGCAGCT+TGG 0.532811 4_1:+17120272 None:intergenic
CACCTCCATTGGAGCTATCA+CGG 0.533190 4_1:+17120123 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 4_1:-17118754 Msa0538020:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 4_1:-17117607 Msa0538020:three_prime_UTR
GGAACAAGAAGGTGCTACAT+TGG 0.551537 4_1:-17118784 Msa0538020:CDS
GAAATCAAAATCCATTTCCA+TGG 0.552738 4_1:-17120707 Msa0538020:CDS
AACAGCAGATTGCATAGCCA+TGG 0.553271 4_1:+17120690 None:intergenic
CGTAAGGAGTGTACCAGAGA+AGG 0.555677 4_1:-17120859 Msa0538020:five_prime_UTR
TCATCAATGTCAGGTGAATG+TGG 0.559421 4_1:-17120389 Msa0538020:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 4_1:+17117911 None:intergenic
TTGGATTGTAGGGAATCAGT+AGG 0.573551 4_1:-17117819 Msa0538020:intron
GATTGTAGGGAATCAGTAGG+AGG 0.575346 4_1:-17117816 Msa0538020:intron
CAATGTCAGGTGAATGTGGA+AGG 0.576041 4_1:-17120385 Msa0538020:intron
GAATGCCGTGATAGCTCCAA+TGG 0.576112 4_1:-17120128 Msa0538020:CDS
GTCAGGTGAATGTGGAAGGA+AGG 0.576429 4_1:-17120381 Msa0538020:intron
ACAGTTACAATGTTAATAGG+AGG 0.583678 4_1:-17120729 Msa0538020:CDS
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 4_1:+17117933 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 4_1:-17120374 Msa0538020:CDS
TCAATAGAAGAACGTTGAAG+AGG 0.588804 4_1:+17120484 None:intergenic
TGATTACCTCTTGAAACTGA+AGG 0.594547 4_1:+17118718 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 4_1:-17118724 Msa0538020:intron
ATTATTTGAGCTGTGAATTG+TGG 0.600446 4_1:-17117375 Msa0538020:three_prime_UTR
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 4_1:-17117913 Msa0538020:intron
ATACCTTCCAGGATCCCTCA+CGG 0.609419 4_1:+17117910 None:intergenic
TTATTAATGCATAGTGGTGG+TGG 0.610336 4_1:+17120772 None:intergenic
CTGGAGACCTATAGTCCACA+AGG 0.611368 4_1:-17117588 Msa0538020:three_prime_UTR
ACAAATTAGGAATGCTCCAG+CGG 0.613575 4_1:+17120084 None:intergenic
TCTCTCCAAGACACACAAAG+AGG 0.636026 4_1:-17120520 Msa0538020:CDS
TGCAAACTTATAAAAGATCG+TGG 0.636201 4_1:+17118208 None:intergenic
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 4_1:-17117925 Msa0538020:CDS
TGGTACACTCCTTACGCTCG+CGG 0.649440 4_1:+17120866 None:intergenic
GAGGAATTGGACATATGGAG+AGG 0.653797 4_1:-17117621 Msa0538020:three_prime_UTR
CTATTATTAATGCATAGTGG+TGG 0.657145 4_1:+17120769 None:intergenic
AATGTGGAAGGAAGGAACAT+GGG 0.663999 4_1:-17120373 Msa0538020:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 4_1:+17117751 None:intergenic
CAGTAACACTCGATAAGCCG+TGG 0.675508 4_1:-17117646 Msa0538020:three_prime_UTR
TATGTCCAATTCCTCAACCA+CGG 0.683624 4_1:+17117629 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 4_1:-17118795 Msa0538020:intron
ACAATGATGAGAATTCCTTG+TGG 0.696408 4_1:+17117573 None:intergenic
TGCCGTGATAGCTCCAATGG+AGG 0.729113 4_1:-17120125 Msa0538020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAACATGTAAAAAAA+TGG - chr4_1:17119219-17119238 Msa0538020:intron 10.0%
!! ATATAATAAAATATGGAAAT+GGG + chr4_1:17119711-17119730 None:intergenic 10.0%
!! AATTATATGTTGCAAAATAT+CGG + chr4_1:17119594-17119613 None:intergenic 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG - chr4_1:17119618-17119637 Msa0538020:intron 15.0%
!! TATAATAAAATATGGAAATG+GGG + chr4_1:17119710-17119729 None:intergenic 15.0%
!! CATATAATAAAATATGGAAA+TGG + chr4_1:17119712-17119731 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG - chr4_1:17119710-17119729 Msa0538020:intron 15.0%
!! GTAAACCATATAATAAAATA+TGG + chr4_1:17119718-17119737 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG - chr4_1:17120434-17120453 Msa0538020:intron 15.0%
!! GTATGTATGTATAATTAGAA+TGG + chr4_1:17117583-17117602 None:intergenic 20.0%
!! CTCAAAGTGAAAAATAAAAA+TGG + chr4_1:17118051-17118070 None:intergenic 20.0%
!!! TTTATTTTTCACTTTGAGAT+AGG - chr4_1:17118053-17118072 Msa0538020:intron 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG + chr4_1:17118180-17118199 None:intergenic 20.0%
!!! TGCTTTTATATAATTGAAAC+TGG - chr4_1:17118399-17118418 Msa0538020:intron 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG - chr4_1:17118613-17118632 Msa0538020:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG - chr4_1:17118614-17118633 Msa0538020:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG - chr4_1:17118661-17118680 Msa0538020:intron 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG - chr4_1:17119622-17119641 Msa0538020:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG + chr4_1:17119837-17119856 None:intergenic 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG + chr4_1:17119838-17119857 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG - chr4_1:17120362-17120381 Msa0538020:CDS 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG - chr4_1:17120900-17120919 Msa0538020:five_prime_UTR 20.0%
! TCTACAGTTACAATGTTAAT+AGG - chr4_1:17117495-17117514 Msa0538020:three_prime_UTR 25.0%
! ACATACATACATAGATAGAT+TGG - chr4_1:17117597-17117616 Msa0538020:three_prime_UTR 25.0%
! CATACATACATAGATAGATT+GGG - chr4_1:17117598-17117617 Msa0538020:three_prime_UTR 25.0%
!!! CATTCATCATTTGATTTTGA+AGG - chr4_1:17117640-17117659 Msa0538020:three_prime_UTR 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG + chr4_1:17117883-17117902 None:intergenic 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG + chr4_1:17117884-17117903 None:intergenic 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG - chr4_1:17117884-17117903 Msa0538020:intron 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG + chr4_1:17118034-17118053 None:intergenic 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG + chr4_1:17118035-17118054 None:intergenic 25.0%
! AAGAATGATCATAGTTATCT+GGG + chr4_1:17118241-17118260 None:intergenic 25.0%
! TAAGAATGATCATAGTTATC+TGG + chr4_1:17118242-17118261 None:intergenic 25.0%
! GAATAATCAAGTATCAATAG+AGG + chr4_1:17118325-17118344 None:intergenic 25.0%
! TATATAAGTATACTTCATCC+TGG - chr4_1:17118476-17118495 Msa0538020:intron 25.0%
! AATAATATTCCACTTCTCAA+AGG + chr4_1:17118822-17118841 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG - chr4_1:17118832-17118851 Msa0538020:intron 25.0%
! TCTTTGCTTGTAACTTATAT+TGG + chr4_1:17118874-17118893 None:intergenic 25.0%
! TAAGTTACAAGCAAAGAAAA+TGG - chr4_1:17118877-17118896 Msa0538020:intron 25.0%
! AAGTTACAAGCAAAGAAAAT+GGG - chr4_1:17118878-17118897 Msa0538020:intron 25.0%
! TTAGCTCATTAATATCTTCT+AGG - chr4_1:17118992-17119011 Msa0538020:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG - chr4_1:17119001-17119020 Msa0538020:intron 25.0%
! ATATCTAAATGTTCTCAAGA+TGG + chr4_1:17119168-17119187 None:intergenic 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG + chr4_1:17119368-17119387 None:intergenic 25.0%
! GAAACTGAAGGTAAATATTT+CGG + chr4_1:17119500-17119519 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG - chr4_1:17119541-17119560 Msa0538020:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG - chr4_1:17119791-17119810 Msa0538020:intron 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG + chr4_1:17119839-17119858 None:intergenic 25.0%
! CCATCATTAAGATTAAGAAA+AGG - chr4_1:17119836-17119855 Msa0538020:intron 25.0%
! ACAAATGAGCAATTTATAAC+TGG - chr4_1:17119930-17119949 Msa0538020:intron 25.0%
! AAATGCAACAGATTAAACTA+CGG + chr4_1:17120055-17120074 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG + chr4_1:17120120-17120139 None:intergenic 25.0%
!! TTTGGTGATATATTTGTGAA+CGG - chr4_1:17120165-17120184 Msa0538020:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG - chr4_1:17120452-17120471 Msa0538020:intron 25.0%
!! TTGGATGATAATATGCTTTT+GGG - chr4_1:17120453-17120472 Msa0538020:intron 25.0%
! ATAAGGCAATAATATGCTAT+TGG - chr4_1:17120677-17120696 Msa0538020:intron 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG - chr4_1:17120708-17120727 Msa0538020:CDS 25.0%
! ATAATGTGTTCTTTAATTGC+TGG + chr4_1:17120837-17120856 None:intergenic 25.0%
CTATTATTAATGCATAGTGG+TGG + chr4_1:17117461-17117480 None:intergenic 30.0%
CACCACTATGCATTAATAAT+AGG - chr4_1:17117459-17117478 Msa0538020:three_prime_UTR 30.0%
CTCCTATTATTAATGCATAG+TGG + chr4_1:17117464-17117483 None:intergenic 30.0%
ACAGTTACAATGTTAATAGG+AGG - chr4_1:17117498-17117517 Msa0538020:three_prime_UTR 30.0%
GAAATCAAAATCCATTTCCA+TGG - chr4_1:17117520-17117539 Msa0538020:three_prime_UTR 30.0%
ATCAATCAATCATCAATGTC+AGG - chr4_1:17117829-17117848 Msa0538020:intron 30.0%
!! CCCAATTGATTTTAACAAGT+TGG - chr4_1:17117880-17117899 Msa0538020:intron 30.0%
AAAGAAAAGAGGGAAAATGA+TGG + chr4_1:17118024-17118043 None:intergenic 30.0%
!!! TTTTTCACTTTGAGATAGGT+CGG - chr4_1:17118057-17118076 Msa0538020:intron 30.0%
GGAATTACCTCAAACAAATT+AGG + chr4_1:17118159-17118178 None:intergenic 30.0%
AGAATGATCATAGTTATCTG+GGG + chr4_1:17118240-17118259 None:intergenic 30.0%
ATAATATTGCGGAAATTGAG+GGG + chr4_1:17118286-17118305 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG + chr4_1:17118287-17118306 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG + chr4_1:17118297-17118316 None:intergenic 30.0%
TATTCTTTCTTAGTTCAAGC+TGG - chr4_1:17118340-17118359 Msa0538020:intron 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG - chr4_1:17118435-17118454 Msa0538020:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG - chr4_1:17118568-17118587 Msa0538020:intron 30.0%
! AATCTAGTTCCTTTGATTCT+AGG - chr4_1:17118696-17118715 Msa0538020:intron 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG + chr4_1:17118760-17118779 None:intergenic 30.0%
GATGGTTGGAAAAACTAAAT+TGG - chr4_1:17118762-17118781 Msa0538020:CDS 30.0%
GGATGAAATACTTATTCTTG+AGG - chr4_1:17118783-17118802 Msa0538020:CDS 30.0%
GGAATATTATTAAGCACTAG+AGG - chr4_1:17118831-17118850 Msa0538020:intron 30.0%
AGTTACAAGCAAAGAAAATG+GGG - chr4_1:17118879-17118898 Msa0538020:intron 30.0%
TGACCATATAGAAAACAACT+AGG - chr4_1:17119054-17119073 Msa0538020:intron 30.0%
GACCATATAGAAAACAACTA+GGG - chr4_1:17119055-17119074 Msa0538020:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG + chr4_1:17119098-17119117 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG + chr4_1:17119290-17119309 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG + chr4_1:17119291-17119310 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG + chr4_1:17119367-17119386 None:intergenic 30.0%
CACTTAAGCTTAATTAGTTC+AGG + chr4_1:17119369-17119388 None:intergenic 30.0%
TACTTTGGTTGAGATAACAT+TGG - chr4_1:17119416-17119435 Msa0538020:intron 30.0%
TATTTACCTTCAGTTTCAAG+AGG - chr4_1:17119503-17119522 Msa0538020:intron 30.0%
TATCAAAAGCAAATTGAACG+TGG + chr4_1:17119657-17119676 None:intergenic 30.0%
TATTACTCCTCAAGAAATGT+TGG - chr4_1:17119738-17119757 Msa0538020:intron 30.0%
GAGCATAAAACATATATGCT+AGG - chr4_1:17119760-17119779 Msa0538020:intron 30.0%
AAATATTAGTGAACAACTGC+AGG - chr4_1:17119973-17119992 Msa0538020:intron 30.0%
TGCAAACTTATAAAAGATCG+TGG + chr4_1:17120022-17120041 None:intergenic 30.0%
! ACGATCTTTTATAAGTTTGC+AGG - chr4_1:17120021-17120040 Msa0538020:intron 30.0%
TCTGCATCAAATCAAAACTT+TGG - chr4_1:17120147-17120166 Msa0538020:CDS 30.0%
CATGCAGATATATTACCATT+AGG + chr4_1:17120191-17120210 None:intergenic 30.0%
AATGGTAATATATCTGCATG+AGG - chr4_1:17120191-17120210 Msa0538020:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG - chr4_1:17120329-17120348 Msa0538020:CDS 30.0%
! TTACGAGTATAATGCTCTTT+TGG - chr4_1:17120389-17120408 Msa0538020:intron 30.0%
! ATAATGCTCTTTTGGATTGT+AGG - chr4_1:17120397-17120416 Msa0538020:intron 30.0%
! TAATGCTCTTTTGGATTGTA+GGG - chr4_1:17120398-17120417 Msa0538020:intron 30.0%
GGAATTCTCATCATTGTATA+AGG - chr4_1:17120660-17120679 Msa0538020:intron 30.0%
ATTATTTGAGCTGTGAATTG+TGG - chr4_1:17120852-17120871 Msa0538020:five_prime_UTR 30.0%
TTATTAATGCATAGTGGTGG+TGG + chr4_1:17117458-17117477 None:intergenic 35.0%
CATTGTAACTGTAGAGTGTA+TGG + chr4_1:17117490-17117509 None:intergenic 35.0%
TCAATAGAAGAACGTTGAAG+AGG + chr4_1:17117746-17117765 None:intergenic 35.0%
TCTTCAACGTTCTTCTATTG+AGG - chr4_1:17117745-17117764 Msa0538020:CDS 35.0%
! TTAACAAGTTGGATGGAACT+TGG - chr4_1:17117891-17117910 Msa0538020:intron 35.0%
GGATACAGTACTTGAAAGAA+AGG + chr4_1:17117977-17117996 None:intergenic 35.0%
AAAATGATGGTAAGGAAGGA+AGG + chr4_1:17118011-17118030 None:intergenic 35.0%
AAAGAGGGAAAATGATGGTA+AGG + chr4_1:17118019-17118038 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTG+AGG - chr4_1:17118149-17118168 Msa0538020:intron 35.0%
TATCTGGGGAAATCAAAAGT+AGG + chr4_1:17118226-17118245 None:intergenic 35.0%
TAATATTGCGGAAATTGAGG+GGG + chr4_1:17118285-17118304 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG + chr4_1:17118288-17118307 None:intergenic 35.0%
GTTGTGTAAATTAAAGACCC+GGG - chr4_1:17118569-17118588 Msa0538020:intron 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG + chr4_1:17118755-17118774 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG - chr4_1:17118836-17118855 Msa0538020:intron 35.0%
TCACGCTTATTTGATTCTCA+AGG - chr4_1:17118931-17118950 Msa0538020:intron 35.0%
TATTTGATTCTCAAGGAGCA+TGG - chr4_1:17118938-17118957 Msa0538020:intron 35.0%
AGCTAATGTACTTTCCAAAC+TGG + chr4_1:17118978-17118997 None:intergenic 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG + chr4_1:17119060-17119079 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG + chr4_1:17119162-17119181 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG - chr4_1:17119251-17119270 Msa0538020:intron 35.0%
GATTTAAAGATGAACCGTTG+AGG + chr4_1:17119268-17119287 None:intergenic 35.0%
CAGCTTGAACATGTTTACTT+TGG - chr4_1:17119401-17119420 Msa0538020:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG + chr4_1:17119512-17119531 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG + chr4_1:17119705-17119724 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG + chr4_1:17119748-17119767 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG - chr4_1:17120173-17120192 Msa0538020:intron 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG + chr4_1:17120297-17120316 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG + chr4_1:17120331-17120350 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG - chr4_1:17120328-17120347 Msa0538020:CDS 35.0%
ACAATGATGAGAATTCCTTG+TGG + chr4_1:17120657-17120676 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG - chr4_1:17120715-17120734 Msa0538020:CDS 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG - chr4_1:17120716-17120735 Msa0538020:CDS 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG - chr4_1:17120717-17120736 Msa0538020:CDS 35.0%
! CTTAGCTGGAGAAATGGATT+TGG - chr4_1:17117400-17117419 Msa0538020:three_prime_UTR 40.0%
AGATTGCATAGCCATGGAAA+TGG + chr4_1:17117534-17117553 None:intergenic 40.0%
ATGGAAACCTTACCTTACCT+GGG + chr4_1:17117564-17117583 None:intergenic 40.0%
AATGGAAACCTTACCTTACC+TGG + chr4_1:17117565-17117584 None:intergenic 40.0%
TCATCAATGTCAGGTGAATG+TGG - chr4_1:17117838-17117857 Msa0538020:intron 40.0%
AATGTGGAAGGAAGGAACAT+GGG - chr4_1:17117854-17117873 Msa0538020:intron 40.0%
TGGAAGAGAATGAGAACATC+AGG + chr4_1:17117938-17117957 None:intergenic 40.0%
GGAAGGAAGGAAGAAATAGA+TGG + chr4_1:17117998-17118017 None:intergenic 40.0%
AGGGAAAATGATGGTAAGGA+AGG + chr4_1:17118015-17118034 None:intergenic 40.0%
ATTGCGAATAACACCTCCAT+TGG + chr4_1:17118118-17118137 None:intergenic 40.0%
ACAAATTAGGAATGCTCCAG+CGG + chr4_1:17118146-17118165 None:intergenic 40.0%
!! GGAACAAGTTGATTGCAAGA+CGG + chr4_1:17118205-17118224 None:intergenic 40.0%
GGATATGCATATGCATTGCT+AGG - chr4_1:17118420-17118439 Msa0538020:intron 40.0%
GCATATGCATTGCTAGGATT+TGG - chr4_1:17118426-17118445 Msa0538020:intron 40.0%
AGTATACTTCATCCTGGACT+AGG - chr4_1:17118482-17118501 Msa0538020:intron 40.0%
ACGTTATTAGTTCCTAGTCC+AGG + chr4_1:17118497-17118516 None:intergenic 40.0%
CAGAGAATAACTGTCCAGTT+TGG - chr4_1:17118961-17118980 Msa0538020:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG - chr4_1:17119106-17119125 Msa0538020:intron 40.0%
TGGATGGATCTCATTCTACT+AGG + chr4_1:17119142-17119161 None:intergenic 40.0%
AAACATGTTCAAGCTGACGA+AGG + chr4_1:17119397-17119416 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG - chr4_1:17119473-17119492 Msa0538020:intron 40.0%
GATGGGGAAGTGAAATTTCA+GGG + chr4_1:17119821-17119840 None:intergenic 40.0%
TGATGGGGAAGTGAAATTTC+AGG + chr4_1:17119822-17119841 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG + chr4_1:17119904-17119923 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG + chr4_1:17120010-17120029 None:intergenic 40.0%
TTGGATTGTAGGGAATCAGT+AGG - chr4_1:17120408-17120427 Msa0538020:intron 40.0%
TATGTCCAATTCCTCAACCA+CGG + chr4_1:17120601-17120620 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG - chr4_1:17120601-17120620 Msa0538020:intron 40.0%
ATGGAGAGGAAGAAATAGAC+TGG - chr4_1:17120620-17120639 Msa0538020:intron 40.0%
! GAGAATTCCTTGTGGACTAT+AGG + chr4_1:17120649-17120668 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG - chr4_1:17120721-17120740 Msa0538020:CDS 40.0%
TAAGCTTCTCGTTCCTTCTC+TGG + chr4_1:17117384-17117403 None:intergenic 45.0%
GAGAAGCTTAGCTGGAGAAA+TGG - chr4_1:17117394-17117413 Msa0538020:three_prime_UTR 45.0%
AACAGCAGATTGCATAGCCA+TGG + chr4_1:17117540-17117559 None:intergenic 45.0%
TATGCAATCTGCTGTTACCC+AGG - chr4_1:17117544-17117563 Msa0538020:three_prime_UTR 45.0%
AATCTGCTGTTACCCAGGTA+AGG - chr4_1:17117549-17117568 Msa0538020:three_prime_UTR 45.0%
TCTCTCCAAGACACACAAAG+AGG - chr4_1:17117707-17117726 Msa0538020:exon 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG + chr4_1:17117715-17117734 None:intergenic 45.0%
CAATGTCAGGTGAATGTGGA+AGG - chr4_1:17117842-17117861 Msa0538020:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG - chr4_1:17117853-17117872 Msa0538020:intron 45.0%
AAGGAAGATTAGCAGCAGCT+TGG + chr4_1:17117958-17117977 None:intergenic 45.0%
TTATTCGCAATGTTGTCCGC+TGG - chr4_1:17118127-17118146 Msa0538020:intron 45.0%
CAACTTGACTACTGCGATGA+AGG + chr4_1:17118553-17118572 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG + chr4_1:17118590-17118609 None:intergenic 45.0%
ACACCTAGCCTAACCTTAGA+TGG - chr4_1:17118744-17118763 Msa0538020:CDS 45.0%
! CAACCATCTAAGGTTAGGCT+AGG + chr4_1:17118750-17118769 None:intergenic 45.0%
CTAGCCTAACCTTAGATGGT+TGG - chr4_1:17118748-17118767 Msa0538020:CDS 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG - chr4_1:17118810-17118829 Msa0538020:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG + chr4_1:17118912-17118931 None:intergenic 45.0%
GACCACTTCTTTGCTCAACT+CGG + chr4_1:17118913-17118932 None:intergenic 45.0%
CACAATGGCCACTTCATCAA+CGG + chr4_1:17119083-17119102 None:intergenic 45.0%
GTTCTCAAGATGGATGTGGA+TGG + chr4_1:17119158-17119177 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG + chr4_1:17119393-17119412 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG - chr4_1:17119422-17119441 Msa0538020:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG - chr4_1:17119432-17119451 Msa0538020:intron 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG - chr4_1:17119443-17119462 Msa0538020:intron 45.0%
GACCGATACAAGAGTGAACT+TGG + chr4_1:17119478-17119497 None:intergenic 45.0%
GAATGCGACATTGCCTTCTT+TGG - chr4_1:17119888-17119907 Msa0538020:intron 45.0%
ATTTGTGTGCACTGTCGTAC+TGG - chr4_1:17120078-17120097 Msa0538020:intron 45.0%
TCAAAGCTCAATTTCCCGTG+AGG - chr4_1:17120302-17120321 Msa0538020:CDS 45.0%
CAAAGCTCAATTTCCCGTGA+GGG - chr4_1:17120303-17120322 Msa0538020:CDS 45.0%
GATTGTAGGGAATCAGTAGG+AGG - chr4_1:17120411-17120430 Msa0538020:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG - chr4_1:17120593-17120612 Msa0538020:intron 45.0%
GAGGAATTGGACATATGGAG+AGG - chr4_1:17120606-17120625 Msa0538020:intron 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG - chr4_1:17120720-17120739 Msa0538020:CDS 45.0%
! CGTAAGGAGTGTACCAGAGA+AGG - chr4_1:17117368-17117387 Msa0538020:three_prime_UTR 50.0%
GAAGGAACGAGAAGCTTAGC+TGG - chr4_1:17117386-17117405 Msa0538020:three_prime_UTR 50.0%
GCTGTTACCCAGGTAAGGTA+AGG - chr4_1:17117554-17117573 Msa0538020:three_prime_UTR 50.0%
GTCAGGTGAATGTGGAAGGA+AGG - chr4_1:17117846-17117865 Msa0538020:intron 50.0%
GAATGCCGTGATAGCTCCAA+TGG - chr4_1:17118099-17118118 Msa0538020:intron 50.0%
CACCTCCATTGGAGCTATCA+CGG + chr4_1:17118107-17118126 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG + chr4_1:17118589-17118608 None:intergenic 50.0%
CGTGCGACTCCTAGAATCAA+AGG + chr4_1:17118708-17118727 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG - chr4_1:17119892-17119911 Msa0538020:intron 50.0%
ATACCTTCCAGGATCCCTCA+CGG + chr4_1:17120320-17120339 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG - chr4_1:17120581-17120600 Msa0538020:intron 50.0%
CTGGAGACCTATAGTCCACA+AGG - chr4_1:17120639-17120658 Msa0538020:intron 50.0%
TGGTACACTCCTTACGCTCG+CGG + chr4_1:17117364-17117383 None:intergenic 55.0%
TGCCGTGATAGCTCCAATGG+AGG - chr4_1:17118102-17118121 Msa0538020:intron 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG - chr4_1:17118908-17118927 Msa0538020:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG - chr4_1:17119072-17119091 Msa0538020:intron 55.0%
AGCGACACTTCCTCTTGTGG+AGG + chr4_1:17119119-17119138 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG + chr4_1:17119122-17119141 None:intergenic 55.0%
CAATTTCCCGTGAGGGATCC+TGG - chr4_1:17120310-17120329 Msa0538020:CDS 55.0%
TACCTTCCAGGATCCCTCAC+GGG + chr4_1:17120319-17120338 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG - chr4_1:17120465-17120484 Msa0538020:intron 55.0%
CACTCGATAAGCCGTGGTTG+AGG - chr4_1:17120587-17120606 Msa0538020:intron 55.0%
CAAAGAACGCCGCGAGCGTA+AGG - chr4_1:17117352-17117371 Msa0538020:three_prime_UTR 60.0%
TTCCCGTGAGGGATCCTGGA+AGG - chr4_1:17120314-17120333 Msa0538020:CDS 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG - chr4_1:17120468-17120487 Msa0538020:intron 60.0%
CTCCTCCTCCACCAACAGCA+CGG + chr4_1:17120479-17120498 None:intergenic 60.0%
! TTGGGCCGTGCTGTTGGTGG+AGG - chr4_1:17120471-17120490 Msa0538020:intron 65.0%
! GGCCGTGCTGTTGGTGGAGG+AGG - chr4_1:17120474-17120493 Msa0538020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17117320 17120929 17117320 ID=Msa0538020;Name=Msa0538020
chr4_1 mRNA 17117320 17120929 17117320 ID=Msa0538020-mRNA-1;Parent=Msa0538020;Name=Msa0538020-mRNA-1;_AED=0.33;_eAED=0.33;_QI=93|1|1|1|1|1|8|396|278
chr4_1 exon 17117320 17117830 17117320 ID=Msa0538020-mRNA-1:exon:5133;Parent=Msa0538020-mRNA-1
chr4_1 exon 17117914 17117969 17117914 ID=Msa0538020-mRNA-1:exon:5132;Parent=Msa0538020-mRNA-1
chr4_1 exon 17118207 17118293 17118207 ID=Msa0538020-mRNA-1:exon:5131;Parent=Msa0538020-mRNA-1
chr4_1 exon 17118725 17118805 17118725 ID=Msa0538020-mRNA-1:exon:5130;Parent=Msa0538020-mRNA-1
chr4_1 exon 17120079 17120174 17120079 ID=Msa0538020-mRNA-1:exon:5129;Parent=Msa0538020-mRNA-1
chr4_1 exon 17120264 17120398 17120264 ID=Msa0538020-mRNA-1:exon:5128;Parent=Msa0538020-mRNA-1
chr4_1 exon 17120474 17120587 17120474 ID=Msa0538020-mRNA-1:exon:5127;Parent=Msa0538020-mRNA-1
chr4_1 exon 17120684 17120929 17120684 ID=Msa0538020-mRNA-1:exon:5126;Parent=Msa0538020-mRNA-1
chr4_1 five_prime_UTR 17120837 17120929 17120837 ID=Msa0538020-mRNA-1:five_prime_utr;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17120684 17120836 17120684 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17120474 17120587 17120474 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17120264 17120398 17120264 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17120079 17120174 17120079 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17118725 17118805 17118725 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17118207 17118293 17118207 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17117914 17117969 17117914 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 CDS 17117716 17117830 17117716 ID=Msa0538020-mRNA-1:cds;Parent=Msa0538020-mRNA-1
chr4_1 three_prime_UTR 17117320 17117715 17117320 ID=Msa0538020-mRNA-1:three_prime_utr;Parent=Msa0538020-mRNA-1
Gene Sequence

>Msa0538020

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGGAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGCATATGATTCTGAGTTAGAAAACAAGAAGCATGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTAATCTTCCTTTCTTTCAAGTCGGACAAATATTTCAGAAATTTGAATGCCGTGATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>Msa0538020

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAANLPFFQVGQIFQKFECRDSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY*