AlfalfaGEDB | Msa1033250

M. sativa cultivar zhongmu-4 / Msa1033250

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033250	XP_003624904.1	95.506	267	4	1	1	267	1	259	0.0	512

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033250	sp\|Q9LXX5\|PPD6_ARATH	74.380	242	60	2	28	267	21	262	2.71e-128	367

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033250	A2Q6H0	95.506	267	4	1	1	267	1	259	0.0	512

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1033250	0.801535	8.602543e-49	-8.615850e-47
Msa0001420	Msa1033250	0.850242	1.926773e-60	-8.615850e-47
Msa0001510	Msa1033250	0.910870	1.153561e-82	-8.615850e-47
Msa0001540	Msa1033250	0.890654	8.105232e-74	-8.615850e-47
Msa0002690	Msa1033250	0.902825	6.521479e-79	-8.615850e-47
Msa0002700	Msa1033250	0.896560	3.281664e-76	-8.615850e-47
Msa0003340	Msa1033250	0.806937	6.454825e-50	-8.615850e-47
Msa0004180	Msa1033250	0.903905	2.137201e-79	-8.615850e-47
Msa0005910	Msa1033250	-0.807726	4.390405e-50	-8.615850e-47
Msa0006580	Msa1033250	0.805945	1.044789e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033250	MtrunA17_Chr7g0255661	95.506	267	4	1	1	267	1	259	0.0	512
Msa1033250	MtrunA17_Chr3g0125881	31.707	164	91	6	108	267	121	267	1.09e-19	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033250	AT3G56650.1	74.380	242	60	2	28	267	21	262	2.75e-129	367
Msa1033250	AT1G77090.1	31.098	164	92	6	108	267	113	259	4.56e-19	84.3

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Find 69 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGGTCTGATGAAGA+AGG	0.592068	7_1:-68284649	None:intergenic
AAAGTGTTTCCGGTGACAAA+TGG	0.467671	7_1:-68285043	None:intergenic
AAATGGTGAGAGCTTTGAAT+GGG	0.595936	7_1:-68284458	None:intergenic
AACAGAAAACTAAACTTTAA+AGG	0.234300	7_1:-68285979	None:intergenic
AACCAAAATGTGCAGAGCCA+TGG	0.527719	7_1:+68284885	Msa1033250:CDS
AACTTTAAAGGAATCAAGCA+TGG	0.601558	7_1:-68285967	None:intergenic
AAGGGTCTGATGAAGAAGGA+GGG	0.521617	7_1:-68284645	None:intergenic
AATCAATGTACCAGCACGAA+GGG	0.598231	7_1:-68284707	None:intergenic
AATGCAACAATTGAGGACAT+CGG	0.624867	7_1:+68284989	Msa1033250:CDS
AATGGGAAAAGGGAGGTGAA+TGG	0.499776	7_1:-68284415	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGTCTGATAGAAATCAAG+TGG	+	chr7_1:68285200-68285219	Msa1033250:intron	30.0%
AACTTGTAAATTAGGAGGAT+TGG	-	chr7_1:68285611-68285630	None:intergenic	30.0%
GATTCATATTCGCTAATAAG+TGG	-	chr7_1:68285684-68285703	None:intergenic	30.0%
CTACAAGGAAAAAAAACAGA+AGG	-	chr7_1:68286030-68286049	None:intergenic	30.0%
ATAGTCTGATAGAAATCAAG+TGG	+	chr7_1:68285200-68285219	Msa1033250:intron	30.0%
AACTTGTAAATTAGGAGGAT+TGG	-	chr7_1:68285611-68285630	None:intergenic	30.0%
GATTCATATTCGCTAATAAG+TGG	-	chr7_1:68285684-68285703	None:intergenic	30.0%
CTACAAGGAAAAAAAACAGA+AGG	-	chr7_1:68286030-68286049	None:intergenic	30.0%
TGAAGTTGTGAATGGGAAAA+GGG	-	chr7_1:68284428-68284447	None:intergenic	35.0%
ATGAAGTTGTGAATGGGAAA+AGG	-	chr7_1:68284429-68284448	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68284300	68286312	68284300	ID=Msa1033250;Name=Msa1033250
chr7_1	mRNA	68284300	68286312	68284300	ID=Msa1033250-mRNA-1;Parent=Msa1033250;Name=Msa1033250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103\|1\|1\|1\|1\|1\|3\|320\|267
chr7_1	exon	68284300	68284718	68284300	ID=Msa1033250-mRNA-1:exon:15896;Parent=Msa1033250-mRNA-1
chr7_1	exon	68284801	68285117	68284801	ID=Msa1033250-mRNA-1:exon:15897;Parent=Msa1033250-mRNA-1
chr7_1	exon	68285822	68286312	68285822	ID=Msa1033250-mRNA-1:exon:15898;Parent=Msa1033250-mRNA-1
chr7_1	five_prime_UTR	68284300	68284402	68284300	ID=Msa1033250-mRNA-1:five_prime_utr;Parent=Msa1033250-mRNA-1
chr7_1	CDS	68284403	68284718	68284403	ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1	CDS	68284801	68285117	68284801	ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1	CDS	68285822	68285992	68285822	ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1	three_prime_UTR	68285993	68286312	68285993	ID=Msa1033250-mRNA-1:three_prime_utr;Parent=Msa1033250-mRNA-1

Gene Sequence

>Msa1033250

ATGGCAACTTCTCCATTCACCTCCCTTTTCCCATTCACAACTTCATCAACTACATCCCATTCAAAGCTCTCACCATTTCGTGCATTCATAAAAGCCTCTGCTTCTGTCTCAGTTCCTGAAACTCACTTCCAAAGCACACCAAGAAGAGAATTCTTGAAGGGTATTGCTCTTTCACTACCACTTATTGCTCTCACAGAACCACCACAGTCACAAGCTAGAGAAGTTTCAGTTGGCTCTTTCCTCCCTCCTTCTTCATCAGACCCTTCTTTTGTTCTCTTCAAAGCTTCTCCTAAAGATACTCCTGCCCTTCGTGCTGGAAATGTGCAGCCATACCAGTTCATCCTTCCCCCAACATGGAAACAGCTTCGGATAGCTAACATACTATCAGGAAACTACTGTCAACCAAAATGTGCAGAGCCATGGGTCGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTTGTGGCTTCACCTTTGATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATCGGGAGCCCAGAAAAGCTTATCGCTTCTCTCGGTCCATTTGTCACCGGAAACACTTTAGATCCAGATGAGCTCCTCGAGGCTTCAGTTGAAAAGATTGATGATCAGACGTATTACAAATATGTGCTTGAAACTCCATATGCTCTTACTGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGATTCTAAAGACCATGCTTGATTCCTTTAAAGTTTAG

Protein sequence

>Msa1033250

MATSPFTSLFPFTTSSTTSHSKLSPFRAFIKASASVSVPETHFQSTPRREFLKGIALSLPLIALTEPPQSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTSEKILKTMLDSFKV*