AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033250 MtrunA17_Chr7g0255661 95.506 267 4 1 1 267 1 259 0.0 512
Msa1033250 MtrunA17_Chr3g0125881 31.707 164 91 6 108 267 121 267 1.09e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033250 AT3G56650.1 74.380 242 60 2 28 267 21 262 2.75e-129 367
Msa1033250 AT1G77090.1 31.098 164 92 6 108 267 113 259 4.56e-19 84.3

Find 69 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCATGGCTCTGCACATTT+TGG 0.188022 7_1:-68284887 None:intergenic
CCCTTCAAGAATTCTCTTCT+TGG 0.220023 7_1:-68284541 None:intergenic
AACAGAAAACTAAACTTTAA+AGG 0.234300 7_1:-68285979 None:intergenic
GTGCTTTGGAAGTGAGTTTC+AGG 0.256242 7_1:-68284517 None:intergenic
TCCGAAGCTGTTTCCATGTT+GGG 0.295637 7_1:-68284832 None:intergenic
TCCACTGATCAACCAGAAAA+TGG 0.302515 7_1:+68284384 Msa1033250:exon
GAAACTCCATATGCTCTTAC+TGG 0.304540 7_1:+68285840 Msa1033250:CDS
ATCTGGATCTAAAGTGTTTC+CGG 0.321003 7_1:-68285053 None:intergenic
AATTGTTGCATTTGGTTTGT+TGG 0.333981 7_1:-68284978 None:intergenic
CGAAGGGCAGGAGTATCTTT+AGG 0.356398 7_1:-68284691 None:intergenic
GAAGCCTCGAGGAGCTCATC+TGG 0.366026 7_1:-68285070 None:intergenic
ATTCTCTTCTTGGTGTGCTT+TGG 0.366749 7_1:-68284531 None:intergenic
ATGTCCTCAATTGTTGCATT+TGG 0.371030 7_1:-68284986 None:intergenic
TTGCATTTGGTTTGTTGGTT+AGG 0.381877 7_1:-68284973 None:intergenic
CGGATAGCTAACATACTATC+AGG 0.410990 7_1:+68284851 Msa1033250:CDS
TTATTAAGCAAGAGTTGTAT+TGG 0.420021 7_1:+68286068 Msa1033250:three_prime_UTR
AGTTTGCCACTGCTTGTCAT+TGG 0.423778 7_1:-68285925 None:intergenic
TGTGAACCAGTAAGAGCATA+TGG 0.439225 7_1:-68285846 None:intergenic
ATCCGAAGCTGTTTCCATGT+TGG 0.463719 7_1:-68284833 None:intergenic
AAAGTGTTTCCGGTGACAAA+TGG 0.467671 7_1:-68285043 None:intergenic
ATGCAACAATTGAGGACATC+GGG 0.486193 7_1:+68284990 Msa1033250:CDS
ATGAAGTTGTGAATGGGAAA+AGG 0.490618 7_1:-68284426 None:intergenic
AATGGGAAAAGGGAGGTGAA+TGG 0.499776 7_1:-68284415 None:intergenic
CCCCAACATGGAAACAGCTT+CGG 0.500004 7_1:+68284831 Msa1033250:CDS
GTAGTTGATGAAGTTGTGAA+TGG 0.502381 7_1:-68284433 None:intergenic
GAAGGGTCTGATGAAGAAGG+AGG 0.509528 7_1:-68284646 None:intergenic
CTTGCAAAAGCAACAGCAAA+GGG 0.514105 7_1:+68285873 Msa1033250:CDS
ACCAAAATGTGCAGAGCCAT+GGG 0.517062 7_1:+68284886 Msa1033250:CDS
AAGGGTCTGATGAAGAAGGA+GGG 0.521617 7_1:-68284645 None:intergenic
GCTTTGAAGAGAACAAAAGA+AGG 0.522695 7_1:-68284664 None:intergenic
AACCAAAATGTGCAGAGCCA+TGG 0.527719 7_1:+68284885 Msa1033250:CDS
CCGAAGCTGTTTCCATGTTG+GGG 0.529262 7_1:-68284831 None:intergenic
GATACTCCTGCCCTTCGTGC+TGG 0.532133 7_1:+68284697 Msa1033250:CDS
CAAACCAAATGCAACAATTG+AGG 0.532140 7_1:+68284982 Msa1033250:CDS
AATGTACCAGCACGAAGGGC+AGG 0.538174 7_1:-68284703 None:intergenic
TGGAATGTGTGAAGGAAGGA+AGG 0.543339 7_1:-68284365 None:intergenic
ATGTGCAGAGCCATGGGTCG+AGG 0.546349 7_1:+68284892 Msa1033250:CDS
GAAATGGTGAGAGCTTTGAA+TGG 0.552256 7_1:-68284459 None:intergenic
ACCAAGAAGAGAATTCTTGA+AGG 0.556299 7_1:+68284540 Msa1033250:CDS
TGAAGTTGTGAATGGGAAAA+GGG 0.559321 7_1:-68284425 None:intergenic
TCTCTCGGTCCATTTGTCAC+CGG 0.560247 7_1:+68285034 Msa1033250:CDS
TCAAATTTAACCTCGACCCA+TGG 0.563391 7_1:-68284902 None:intergenic
TCTTGCAAAAGCAACAGCAA+AGG 0.565478 7_1:+68285872 Msa1033250:CDS
TTGTTGGTTAGGCGTATCAA+AGG 0.567096 7_1:-68284962 None:intergenic
CAAGCTAGAGAAGTTTCAGT+TGG 0.578431 7_1:+68284613 Msa1033250:CDS
AAAGAAGGGTCTGATGAAGA+AGG 0.592068 7_1:-68284649 None:intergenic
ACTTCTCTAGCTTGTGACTG+TGG 0.595522 7_1:-68284604 None:intergenic
AAATGGTGAGAGCTTTGAAT+GGG 0.595936 7_1:-68284458 None:intergenic
AATCAATGTACCAGCACGAA+GGG 0.598231 7_1:-68284707 None:intergenic
AACTTTAAAGGAATCAAGCA+TGG 0.601558 7_1:-68285967 None:intergenic
CGAAGCTGTTTCCATGTTGG+GGG 0.605438 7_1:-68284830 None:intergenic
GGTCTGATGAAGAAGGAGGG+AGG 0.608012 7_1:-68284642 None:intergenic
TAGTTGATGAAGTTGTGAAT+GGG 0.614272 7_1:-68284432 None:intergenic
AGGAACTGAGACAGAAGCAG+AGG 0.618479 7_1:-68284497 None:intergenic
GAAAAGCTTATCGCTTCTCT+CGG 0.619390 7_1:+68285019 Msa1033250:CDS
TCTCTAGCTTGTGACTGTGG+TGG 0.623327 7_1:-68284601 None:intergenic
TCAGTGGAATGTGTGAAGGA+AGG 0.624428 7_1:-68284369 None:intergenic
AATGCAACAATTGAGGACAT+CGG 0.624867 7_1:+68284989 Msa1033250:CDS
TGAAAAGATTGATGATCAGA+CGG 0.625680 7_1:+68285096 Msa1033250:CDS
CCAAGAAGAGAATTCTTGAA+GGG 0.629087 7_1:+68284541 Msa1033250:CDS
GGAATGTGTGAAGGAAGGAA+GGG 0.630465 7_1:-68284364 None:intergenic
CTTTGAAGAGAACAAAAGAA+GGG 0.632727 7_1:-68284663 None:intergenic
CTAGTGCCAATGACAAGCAG+TGG 0.640793 7_1:+68285919 Msa1033250:CDS
CAATCAATGTACCAGCACGA+AGG 0.662156 7_1:-68284708 None:intergenic
TGTGAAGGAAGGAAGGGACA+AGG 0.686340 7_1:-68284358 None:intergenic
GGTTCTGTGAGAGCAATAAG+TGG 0.687982 7_1:-68284580 None:intergenic
AGATCCAGATGAGCTCCTCG+AGG 0.689017 7_1:+68285066 Msa1033250:CDS
TTGATCAGTGGAATGTGTGA+AGG 0.689933 7_1:-68284373 None:intergenic
AGTTGTGAATGGGAAAAGGG+AGG 0.723640 7_1:-68284422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAGTTCAAATATAA+CGG + chr7_1:68285582-68285601 Msa1033250:intron 15.0%
!! AGATAAAAAAAATTCAAATG+GGG - chr7_1:68286095-68286114 None:intergenic 15.0%
!! CAGATAAAAAAAATTCAAAT+GGG - chr7_1:68286096-68286115 None:intergenic 15.0%
!! TCAGATAAAAAAAATTCAAA+TGG - chr7_1:68286097-68286116 None:intergenic 15.0%
!! AAAACTTAGTTCAAATATAA+CGG + chr7_1:68285582-68285601 Msa1033250:intron 15.0%
!! AGATAAAAAAAATTCAAATG+GGG - chr7_1:68286095-68286114 None:intergenic 15.0%
!! CAGATAAAAAAAATTCAAAT+GGG - chr7_1:68286096-68286115 None:intergenic 15.0%
!! TCAGATAAAAAAAATTCAAA+TGG - chr7_1:68286097-68286116 None:intergenic 15.0%
!! AAATTTGAAGATGAAAAACA+AGG + chr7_1:68284917-68284936 Msa1033250:CDS 20.0%
!! AGTGGTATTATTATAGAAAA+TGG + chr7_1:68285218-68285237 Msa1033250:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG + chr7_1:68285219-68285238 Msa1033250:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG - chr7_1:68285259-68285278 None:intergenic 20.0%
!! AACAGAAAACTAAACTTTAA+AGG - chr7_1:68285982-68286001 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG + chr7_1:68285987-68286006 Msa1033250:exon 20.0%
!! TGTATAAACAAAAAACTACA+AGG - chr7_1:68286045-68286064 None:intergenic 20.0%
!!! TTGTAGTTTTTTGTTTATAC+AGG + chr7_1:68286044-68286063 Msa1033250:three_prime_UTR 20.0%
!!! TCTACTTTTTTTTGTGATAT+TGG - chr7_1:68286225-68286244 None:intergenic 20.0%
!! AAATTTGAAGATGAAAAACA+AGG + chr7_1:68284917-68284936 Msa1033250:CDS 20.0%
!! AGTGGTATTATTATAGAAAA+TGG + chr7_1:68285218-68285237 Msa1033250:intron 20.0%
!! GTGGTATTATTATAGAAAAT+GGG + chr7_1:68285219-68285238 Msa1033250:intron 20.0%
!!! TATATATCTGAAACTATGAT+AGG - chr7_1:68285259-68285278 None:intergenic 20.0%
!! AACAGAAAACTAAACTTTAA+AGG - chr7_1:68285982-68286001 None:intergenic 20.0%
!!! GTTTAGTTTTCTGTTATTAA+AGG + chr7_1:68285987-68286006 Msa1033250:exon 20.0%
!! TGTATAAACAAAAAACTACA+AGG - chr7_1:68286045-68286064 None:intergenic 20.0%
!!! TTGTAGTTTTTTGTTTATAC+AGG + chr7_1:68286044-68286063 Msa1033250:three_prime_UTR 20.0%
!!! TCTACTTTTTTTTGTGATAT+TGG - chr7_1:68286225-68286244 None:intergenic 20.0%
!! ATCACATCATATTTTCACAA+TGG + chr7_1:68284302-68284321 Msa1033250:five_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG + chr7_1:68284308-68284327 Msa1033250:five_prime_UTR 25.0%
!!! GGTTCAATGTTGATTTTTTT+TGG - chr7_1:68284340-68284359 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG + chr7_1:68284928-68284947 Msa1033250:CDS 25.0%
! ATGTAAATGTTATCTGTTGT+TGG + chr7_1:68285757-68285776 Msa1033250:intron 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG + chr7_1:68286068-68286087 Msa1033250:three_prime_UTR 25.0%
!! ATCACATCATATTTTCACAA+TGG + chr7_1:68284302-68284321 Msa1033250:five_prime_UTR 25.0%
!! TCATATTTTCACAATGGATA+AGG + chr7_1:68284308-68284327 Msa1033250:five_prime_UTR 25.0%
!!! GGTTCAATGTTGATTTTTTT+TGG - chr7_1:68284340-68284359 None:intergenic 25.0%
! TGAAAAACAAGGAAAAATTC+AGG + chr7_1:68284928-68284947 Msa1033250:CDS 25.0%
! ATGTAAATGTTATCTGTTGT+TGG + chr7_1:68285757-68285776 Msa1033250:intron 25.0%
! TTATTAAGCAAGAGTTGTAT+TGG + chr7_1:68286068-68286087 Msa1033250:three_prime_UTR 25.0%
!! TAGTTGATGAAGTTGTGAAT+GGG - chr7_1:68284435-68284454 None:intergenic 30.0%
! CTTTGAAGAGAACAAAAGAA+GGG - chr7_1:68284666-68284685 None:intergenic 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG - chr7_1:68284981-68285000 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG + chr7_1:68285096-68285115 Msa1033250:CDS 30.0%
ATAGTCTGATAGAAATCAAG+TGG + chr7_1:68285200-68285219 Msa1033250:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG + chr7_1:68285399-68285418 Msa1033250:intron 30.0%
AACTTGTAAATTAGGAGGAT+TGG - chr7_1:68285611-68285630 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG - chr7_1:68285684-68285703 None:intergenic 30.0%
!!! ATACTGCAGACATCATTTTT+TGG - chr7_1:68285805-68285824 None:intergenic 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG + chr7_1:68285896-68285915 Msa1033250:CDS 30.0%
! AACTTTAAAGGAATCAAGCA+TGG - chr7_1:68285970-68285989 None:intergenic 30.0%
CTACAAGGAAAAAAAACAGA+AGG - chr7_1:68286030-68286049 None:intergenic 30.0%
!! TAGTTGATGAAGTTGTGAAT+GGG - chr7_1:68284435-68284454 None:intergenic 30.0%
! CTTTGAAGAGAACAAAAGAA+GGG - chr7_1:68284666-68284685 None:intergenic 30.0%
!! AATTGTTGCATTTGGTTTGT+TGG - chr7_1:68284981-68285000 None:intergenic 30.0%
! TGAAAAGATTGATGATCAGA+CGG + chr7_1:68285096-68285115 Msa1033250:CDS 30.0%
ATAGTCTGATAGAAATCAAG+TGG + chr7_1:68285200-68285219 Msa1033250:intron 30.0%
! TCGTTGAATATGATTAGCTA+TGG + chr7_1:68285399-68285418 Msa1033250:intron 30.0%
AACTTGTAAATTAGGAGGAT+TGG - chr7_1:68285611-68285630 None:intergenic 30.0%
GATTCATATTCGCTAATAAG+TGG - chr7_1:68285684-68285703 None:intergenic 30.0%
!!! ATACTGCAGACATCATTTTT+TGG - chr7_1:68285805-68285824 None:intergenic 30.0%
!!! AAACACTGTTGTTTTGTTTG+TGG + chr7_1:68285896-68285915 Msa1033250:CDS 30.0%
! AACTTTAAAGGAATCAAGCA+TGG - chr7_1:68285970-68285989 None:intergenic 30.0%
CTACAAGGAAAAAAAACAGA+AGG - chr7_1:68286030-68286049 None:intergenic 30.0%
TGAAGTTGTGAATGGGAAAA+GGG - chr7_1:68284428-68284447 None:intergenic 35.0%
ATGAAGTTGTGAATGGGAAA+AGG - chr7_1:68284429-68284448 None:intergenic 35.0%
!! GTAGTTGATGAAGTTGTGAA+TGG - chr7_1:68284436-68284455 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG - chr7_1:68284461-68284480 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG - chr7_1:68284478-68284497 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG + chr7_1:68284540-68284559 Msa1033250:CDS 35.0%
CCAAGAAGAGAATTCTTGAA+GGG + chr7_1:68284541-68284560 Msa1033250:CDS 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG - chr7_1:68284667-68284686 None:intergenic 35.0%
!! GTCTAGATTTAGTTCTTTGC+AGG + chr7_1:68284779-68284798 Msa1033250:intron 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG + chr7_1:68284934-68284953 Msa1033250:CDS 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG - chr7_1:68284976-68284995 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG + chr7_1:68284982-68285001 Msa1033250:CDS 35.0%
ATGTCCTCAATTGTTGCATT+TGG - chr7_1:68284989-68285008 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG + chr7_1:68284989-68285008 Msa1033250:CDS 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG - chr7_1:68285056-68285075 None:intergenic 35.0%
CAACGGTTAATCACGAAATT+CGG + chr7_1:68285482-68285501 Msa1033250:intron 35.0%
GGGTAAACTTGTAAATTAGG+AGG - chr7_1:68285616-68285635 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG - chr7_1:68285619-68285638 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG - chr7_1:68285718-68285737 None:intergenic 35.0%
!!! CCTGCTCTCATCATTTTTTT+GGG + chr7_1:68285716-68285735 Msa1033250:intron 35.0%
TTACATTTCAAGCAGCAGTT+TGG - chr7_1:68285743-68285762 None:intergenic 35.0%
TGAAGTTGTGAATGGGAAAA+GGG - chr7_1:68284428-68284447 None:intergenic 35.0%
ATGAAGTTGTGAATGGGAAA+AGG - chr7_1:68284429-68284448 None:intergenic 35.0%
!! GTAGTTGATGAAGTTGTGAA+TGG - chr7_1:68284436-68284455 None:intergenic 35.0%
!! AAATGGTGAGAGCTTTGAAT+GGG - chr7_1:68284461-68284480 None:intergenic 35.0%
! GCTTTTATGAATGCACGAAA+TGG - chr7_1:68284478-68284497 None:intergenic 35.0%
ACCAAGAAGAGAATTCTTGA+AGG + chr7_1:68284540-68284559 Msa1033250:CDS 35.0%
CCAAGAAGAGAATTCTTGAA+GGG + chr7_1:68284541-68284560 Msa1033250:CDS 35.0%
!! GCTTTGAAGAGAACAAAAGA+AGG - chr7_1:68284667-68284686 None:intergenic 35.0%
!! GTCTAGATTTAGTTCTTTGC+AGG + chr7_1:68284779-68284798 Msa1033250:intron 35.0%
!! ACAAGGAAAAATTCAGGTTG+TGG + chr7_1:68284934-68284953 Msa1033250:CDS 35.0%
!! TTGCATTTGGTTTGTTGGTT+AGG - chr7_1:68284976-68284995 None:intergenic 35.0%
CAAACCAAATGCAACAATTG+AGG + chr7_1:68284982-68285001 Msa1033250:CDS 35.0%
ATGTCCTCAATTGTTGCATT+TGG - chr7_1:68284989-68285008 None:intergenic 35.0%
AATGCAACAATTGAGGACAT+CGG + chr7_1:68284989-68285008 Msa1033250:CDS 35.0%
! ATCTGGATCTAAAGTGTTTC+CGG - chr7_1:68285056-68285075 None:intergenic 35.0%
CAACGGTTAATCACGAAATT+CGG + chr7_1:68285482-68285501 Msa1033250:intron 35.0%
GGGTAAACTTGTAAATTAGG+AGG - chr7_1:68285616-68285635 None:intergenic 35.0%
CAGGGGTAAACTTGTAAATT+AGG - chr7_1:68285619-68285638 None:intergenic 35.0%
CCAAAAAAATGATGAGAGCA+GGG - chr7_1:68285718-68285737 None:intergenic 35.0%
!!! CCTGCTCTCATCATTTTTTT+GGG + chr7_1:68285716-68285735 Msa1033250:intron 35.0%
TTACATTTCAAGCAGCAGTT+TGG - chr7_1:68285743-68285762 None:intergenic 35.0%
TTGATCAGTGGAATGTGTGA+AGG - chr7_1:68284376-68284395 None:intergenic 40.0%
TCCACTGATCAACCAGAAAA+TGG + chr7_1:68284384-68284403 Msa1033250:exon 40.0%
!!! ATGGAGAAGTTGCCATTTTC+TGG - chr7_1:68284399-68284418 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG - chr7_1:68284462-68284481 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGCTT+TGG - chr7_1:68284534-68284553 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG - chr7_1:68284544-68284563 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG + chr7_1:68284613-68284632 Msa1033250:CDS 40.0%
AAAGAAGGGTCTGATGAAGA+AGG - chr7_1:68284652-68284671 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG - chr7_1:68284710-68284729 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG + chr7_1:68284851-68284870 Msa1033250:CDS 40.0%
TCAAATTTAACCTCGACCCA+TGG - chr7_1:68284905-68284924 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG - chr7_1:68284965-68284984 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG + chr7_1:68284990-68285009 Msa1033250:CDS 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG - chr7_1:68285018-68285037 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG - chr7_1:68285019-68285038 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG + chr7_1:68285019-68285038 Msa1033250:CDS 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG - chr7_1:68285046-68285065 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG - chr7_1:68285303-68285322 None:intergenic 40.0%
! ATAAACGCACAAGAGCACAA+CGG + chr7_1:68285465-68285484 Msa1033250:intron 40.0%
TACAACAGTCACTCTGTTGT+CGG - chr7_1:68285525-68285544 None:intergenic 40.0%
GACAAACACTCGAACATAGT+GGG - chr7_1:68285662-68285681 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG + chr7_1:68285715-68285734 Msa1033250:intron 40.0%
CCCAAAAAAATGATGAGAGC+AGG - chr7_1:68285719-68285738 None:intergenic 40.0%
GAAACTCCATATGCTCTTAC+TGG + chr7_1:68285840-68285859 Msa1033250:CDS 40.0%
! TGTGAACCAGTAAGAGCATA+TGG - chr7_1:68285849-68285868 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG + chr7_1:68285872-68285891 Msa1033250:CDS 40.0%
CTTGCAAAAGCAACAGCAAA+GGG + chr7_1:68285873-68285892 Msa1033250:CDS 40.0%
TTGATCAGTGGAATGTGTGA+AGG - chr7_1:68284376-68284395 None:intergenic 40.0%
TCCACTGATCAACCAGAAAA+TGG + chr7_1:68284384-68284403 Msa1033250:exon 40.0%
!!! ATGGAGAAGTTGCCATTTTC+TGG - chr7_1:68284399-68284418 None:intergenic 40.0%
!! GAAATGGTGAGAGCTTTGAA+TGG - chr7_1:68284462-68284481 None:intergenic 40.0%
! ATTCTCTTCTTGGTGTGCTT+TGG - chr7_1:68284534-68284553 None:intergenic 40.0%
CCCTTCAAGAATTCTCTTCT+TGG - chr7_1:68284544-68284563 None:intergenic 40.0%
CAAGCTAGAGAAGTTTCAGT+TGG + chr7_1:68284613-68284632 Msa1033250:CDS 40.0%
AAAGAAGGGTCTGATGAAGA+AGG - chr7_1:68284652-68284671 None:intergenic 40.0%
AATCAATGTACCAGCACGAA+GGG - chr7_1:68284710-68284729 None:intergenic 40.0%
CGGATAGCTAACATACTATC+AGG + chr7_1:68284851-68284870 Msa1033250:CDS 40.0%
TCAAATTTAACCTCGACCCA+TGG - chr7_1:68284905-68284924 None:intergenic 40.0%
! TTGTTGGTTAGGCGTATCAA+AGG - chr7_1:68284965-68284984 None:intergenic 40.0%
ATGCAACAATTGAGGACATC+GGG + chr7_1:68284990-68285009 Msa1033250:CDS 40.0%
! GAGAAGCGATAAGCTTTTCT+GGG - chr7_1:68285018-68285037 None:intergenic 40.0%
! AGAGAAGCGATAAGCTTTTC+TGG - chr7_1:68285019-68285038 None:intergenic 40.0%
GAAAAGCTTATCGCTTCTCT+CGG + chr7_1:68285019-68285038 Msa1033250:CDS 40.0%
! AAAGTGTTTCCGGTGACAAA+TGG - chr7_1:68285046-68285065 None:intergenic 40.0%
AATTCCCTCAGCATAACCTA+TGG - chr7_1:68285303-68285322 None:intergenic 40.0%
! ATAAACGCACAAGAGCACAA+CGG + chr7_1:68285465-68285484 Msa1033250:intron 40.0%
TACAACAGTCACTCTGTTGT+CGG - chr7_1:68285525-68285544 None:intergenic 40.0%
GACAAACACTCGAACATAGT+GGG - chr7_1:68285662-68285681 None:intergenic 40.0%
!!! CCCTGCTCTCATCATTTTTT+TGG + chr7_1:68285715-68285734 Msa1033250:intron 40.0%
CCCAAAAAAATGATGAGAGC+AGG - chr7_1:68285719-68285738 None:intergenic 40.0%
GAAACTCCATATGCTCTTAC+TGG + chr7_1:68285840-68285859 Msa1033250:CDS 40.0%
! TGTGAACCAGTAAGAGCATA+TGG - chr7_1:68285849-68285868 None:intergenic 40.0%
TCTTGCAAAAGCAACAGCAA+AGG + chr7_1:68285872-68285891 Msa1033250:CDS 40.0%
CTTGCAAAAGCAACAGCAAA+GGG + chr7_1:68285873-68285892 Msa1033250:CDS 40.0%
GGAATGTGTGAAGGAAGGAA+GGG - chr7_1:68284367-68284386 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG - chr7_1:68284368-68284387 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG - chr7_1:68284372-68284391 None:intergenic 45.0%
!!! GCCATTTTCTGGTTGATCAG+TGG - chr7_1:68284388-68284407 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG - chr7_1:68284418-68284437 None:intergenic 45.0%
AGTTGTGAATGGGAAAAGGG+AGG - chr7_1:68284425-68284444 None:intergenic 45.0%
!! GTGCTTTGGAAGTGAGTTTC+AGG - chr7_1:68284520-68284539 None:intergenic 45.0%
GGTTCTGTGAGAGCAATAAG+TGG - chr7_1:68284583-68284602 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG - chr7_1:68284607-68284626 None:intergenic 45.0%
AAGGGTCTGATGAAGAAGGA+GGG - chr7_1:68284648-68284667 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG - chr7_1:68284711-68284730 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG - chr7_1:68284835-68284854 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG - chr7_1:68284836-68284855 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG + chr7_1:68284885-68284904 Msa1033250:CDS 45.0%
ACCAAAATGTGCAGAGCCAT+GGG + chr7_1:68284886-68284905 Msa1033250:CDS 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG - chr7_1:68285084-68285103 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG + chr7_1:68285284-68285303 Msa1033250:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG - chr7_1:68285296-68285315 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG + chr7_1:68285295-68285314 Msa1033250:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG + chr7_1:68285296-68285315 Msa1033250:intron 45.0%
GGACAAACACTCGAACATAG+TGG - chr7_1:68285663-68285682 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG - chr7_1:68285928-68285947 None:intergenic 45.0%
GGAATGTGTGAAGGAAGGAA+GGG - chr7_1:68284367-68284386 None:intergenic 45.0%
TGGAATGTGTGAAGGAAGGA+AGG - chr7_1:68284368-68284387 None:intergenic 45.0%
TCAGTGGAATGTGTGAAGGA+AGG - chr7_1:68284372-68284391 None:intergenic 45.0%
!!! GCCATTTTCTGGTTGATCAG+TGG - chr7_1:68284388-68284407 None:intergenic 45.0%
AATGGGAAAAGGGAGGTGAA+TGG - chr7_1:68284418-68284437 None:intergenic 45.0%
AGTTGTGAATGGGAAAAGGG+AGG - chr7_1:68284425-68284444 None:intergenic 45.0%
!! GTGCTTTGGAAGTGAGTTTC+AGG - chr7_1:68284520-68284539 None:intergenic 45.0%
GGTTCTGTGAGAGCAATAAG+TGG - chr7_1:68284583-68284602 None:intergenic 45.0%
! ACTTCTCTAGCTTGTGACTG+TGG - chr7_1:68284607-68284626 None:intergenic 45.0%
AAGGGTCTGATGAAGAAGGA+GGG - chr7_1:68284648-68284667 None:intergenic 45.0%
CAATCAATGTACCAGCACGA+AGG - chr7_1:68284711-68284730 None:intergenic 45.0%
! TCCGAAGCTGTTTCCATGTT+GGG - chr7_1:68284835-68284854 None:intergenic 45.0%
! ATCCGAAGCTGTTTCCATGT+TGG - chr7_1:68284836-68284855 None:intergenic 45.0%
AACCAAAATGTGCAGAGCCA+TGG + chr7_1:68284885-68284904 Msa1033250:CDS 45.0%
ACCAAAATGTGCAGAGCCAT+GGG + chr7_1:68284886-68284905 Msa1033250:CDS 45.0%
! TCTTTTCAACTGAAGCCTCG+AGG - chr7_1:68285084-68285103 None:intergenic 45.0%
GAGTTTCATCCTCCTACCAT+AGG + chr7_1:68285284-68285303 Msa1033250:intron 45.0%
TCAGCATAACCTATGGTAGG+AGG - chr7_1:68285296-68285315 None:intergenic 45.0%
TCCTACCATAGGTTATGCTG+AGG + chr7_1:68285295-68285314 Msa1033250:intron 45.0%
CCTACCATAGGTTATGCTGA+GGG + chr7_1:68285296-68285315 Msa1033250:intron 45.0%
GGACAAACACTCGAACATAG+TGG - chr7_1:68285663-68285682 None:intergenic 45.0%
AGTTTGCCACTGCTTGTCAT+TGG - chr7_1:68285928-68285947 None:intergenic 45.0%
TGTGAAGGAAGGAAGGGACA+AGG - chr7_1:68284361-68284380 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG - chr7_1:68284500-68284519 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG - chr7_1:68284604-68284623 None:intergenic 50.0%
GAAGGGTCTGATGAAGAAGG+AGG - chr7_1:68284649-68284668 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG - chr7_1:68284694-68284713 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG - chr7_1:68284820-68284839 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG + chr7_1:68284819-68284838 Msa1033250:CDS 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG - chr7_1:68284833-68284852 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG - chr7_1:68284834-68284853 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG + chr7_1:68284831-68284850 Msa1033250:CDS 50.0%
!! ACCCATGGCTCTGCACATTT+TGG - chr7_1:68284890-68284909 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG + chr7_1:68285034-68285053 Msa1033250:CDS 50.0%
CCCTCAGCATAACCTATGGT+AGG - chr7_1:68285299-68285318 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG + chr7_1:68285630-68285649 Msa1033250:intron 50.0%
TACCCCTGAACTGTACGTCA+GGG + chr7_1:68285631-68285650 Msa1033250:intron 50.0%
AACCCCTGACGTACAGTTCA+GGG - chr7_1:68285637-68285656 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG + chr7_1:68285919-68285938 Msa1033250:CDS 50.0%
TGTGAAGGAAGGAAGGGACA+AGG - chr7_1:68284361-68284380 None:intergenic 50.0%
AGGAACTGAGACAGAAGCAG+AGG - chr7_1:68284500-68284519 None:intergenic 50.0%
! TCTCTAGCTTGTGACTGTGG+TGG - chr7_1:68284604-68284623 None:intergenic 50.0%
GAAGGGTCTGATGAAGAAGG+AGG - chr7_1:68284649-68284668 None:intergenic 50.0%
!! CGAAGGGCAGGAGTATCTTT+AGG - chr7_1:68284694-68284713 None:intergenic 50.0%
ATGTTGGGGGAAGGATGAAC+TGG - chr7_1:68284820-68284839 None:intergenic 50.0%
AGTTCATCCTTCCCCCAACA+TGG + chr7_1:68284819-68284838 Msa1033250:CDS 50.0%
! CGAAGCTGTTTCCATGTTGG+GGG - chr7_1:68284833-68284852 None:intergenic 50.0%
! CCGAAGCTGTTTCCATGTTG+GGG - chr7_1:68284834-68284853 None:intergenic 50.0%
CCCCAACATGGAAACAGCTT+CGG + chr7_1:68284831-68284850 Msa1033250:CDS 50.0%
!! ACCCATGGCTCTGCACATTT+TGG - chr7_1:68284890-68284909 None:intergenic 50.0%
TCTCTCGGTCCATTTGTCAC+CGG + chr7_1:68285034-68285053 Msa1033250:CDS 50.0%
CCCTCAGCATAACCTATGGT+AGG - chr7_1:68285299-68285318 None:intergenic 50.0%
TTACCCCTGAACTGTACGTC+AGG + chr7_1:68285630-68285649 Msa1033250:intron 50.0%
TACCCCTGAACTGTACGTCA+GGG + chr7_1:68285631-68285650 Msa1033250:intron 50.0%
AACCCCTGACGTACAGTTCA+GGG - chr7_1:68285637-68285656 None:intergenic 50.0%
CTAGTGCCAATGACAAGCAG+TGG + chr7_1:68285919-68285938 Msa1033250:CDS 50.0%
GGTCTGATGAAGAAGGAGGG+AGG - chr7_1:68284645-68284664 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG - chr7_1:68284706-68284725 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG - chr7_1:68284815-68284834 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG - chr7_1:68284829-68284848 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG + chr7_1:68285066-68285085 Msa1033250:CDS 55.0%
ACCCCTGAACTGTACGTCAG+GGG + chr7_1:68285632-68285651 Msa1033250:intron 55.0%
ACCCCTGACGTACAGTTCAG+GGG - chr7_1:68285636-68285655 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG - chr7_1:68285638-68285657 None:intergenic 55.0%
GGTCTGATGAAGAAGGAGGG+AGG - chr7_1:68284645-68284664 None:intergenic 55.0%
AATGTACCAGCACGAAGGGC+AGG - chr7_1:68284706-68284725 None:intergenic 55.0%
GGGGGAAGGATGAACTGGTA+TGG - chr7_1:68284815-68284834 None:intergenic 55.0%
! GCTGTTTCCATGTTGGGGGA+AGG - chr7_1:68284829-68284848 None:intergenic 55.0%
AGATCCAGATGAGCTCCTCG+AGG + chr7_1:68285066-68285085 Msa1033250:CDS 55.0%
ACCCCTGAACTGTACGTCAG+GGG + chr7_1:68285632-68285651 Msa1033250:intron 55.0%
ACCCCTGACGTACAGTTCAG+GGG - chr7_1:68285636-68285655 None:intergenic 55.0%
GAACCCCTGACGTACAGTTC+AGG - chr7_1:68285638-68285657 None:intergenic 55.0%
GATACTCCTGCCCTTCGTGC+TGG + chr7_1:68284697-68284716 Msa1033250:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG + chr7_1:68284892-68284911 Msa1033250:CDS 60.0%
GAAGCCTCGAGGAGCTCATC+TGG - chr7_1:68285073-68285092 None:intergenic 60.0%
GATACTCCTGCCCTTCGTGC+TGG + chr7_1:68284697-68284716 Msa1033250:CDS 60.0%
ATGTGCAGAGCCATGGGTCG+AGG + chr7_1:68284892-68284911 Msa1033250:CDS 60.0%
GAAGCCTCGAGGAGCTCATC+TGG - chr7_1:68285073-68285092 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68284300 68286312 68284300 ID=Msa1033250;Name=Msa1033250
chr7_1 mRNA 68284300 68286312 68284300 ID=Msa1033250-mRNA-1;Parent=Msa1033250;Name=Msa1033250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|1|3|320|267
chr7_1 exon 68284300 68284718 68284300 ID=Msa1033250-mRNA-1:exon:15896;Parent=Msa1033250-mRNA-1
chr7_1 exon 68284801 68285117 68284801 ID=Msa1033250-mRNA-1:exon:15897;Parent=Msa1033250-mRNA-1
chr7_1 exon 68285822 68286312 68285822 ID=Msa1033250-mRNA-1:exon:15898;Parent=Msa1033250-mRNA-1
chr7_1 five_prime_UTR 68284300 68284402 68284300 ID=Msa1033250-mRNA-1:five_prime_utr;Parent=Msa1033250-mRNA-1
chr7_1 CDS 68284403 68284718 68284403 ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1 CDS 68284801 68285117 68284801 ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1 CDS 68285822 68285992 68285822 ID=Msa1033250-mRNA-1:cds;Parent=Msa1033250-mRNA-1
chr7_1 three_prime_UTR 68285993 68286312 68285993 ID=Msa1033250-mRNA-1:three_prime_utr;Parent=Msa1033250-mRNA-1
Gene Sequence

>Msa1033250

ATGGCAACTTCTCCATTCACCTCCCTTTTCCCATTCACAACTTCATCAACTACATCCCATTCAAAGCTCTCACCATTTCGTGCATTCATAAAAGCCTCTGCTTCTGTCTCAGTTCCTGAAACTCACTTCCAAAGCACACCAAGAAGAGAATTCTTGAAGGGTATTGCTCTTTCACTACCACTTATTGCTCTCACAGAACCACCACAGTCACAAGCTAGAGAAGTTTCAGTTGGCTCTTTCCTCCCTCCTTCTTCATCAGACCCTTCTTTTGTTCTCTTCAAAGCTTCTCCTAAAGATACTCCTGCCCTTCGTGCTGGAAATGTGCAGCCATACCAGTTCATCCTTCCCCCAACATGGAAACAGCTTCGGATAGCTAACATACTATCAGGAAACTACTGTCAACCAAAATGTGCAGAGCCATGGGTCGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTTGTGGCTTCACCTTTGATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATCGGGAGCCCAGAAAAGCTTATCGCTTCTCTCGGTCCATTTGTCACCGGAAACACTTTAGATCCAGATGAGCTCCTCGAGGCTTCAGTTGAAAAGATTGATGATCAGACGTATTACAAATATGTGCTTGAAACTCCATATGCTCTTACTGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGATTCTAAAGACCATGCTTGATTCCTTTAAAGTTTAG

Protein sequence

>Msa1033250

MATSPFTSLFPFTTSSTTSHSKLSPFRAFIKASASVSVPETHFQSTPRREFLKGIALSLPLIALTEPPQSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTSEKILKTMLDSFKV*