AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753040 MtrunA17_Chr5g0397071 89.916 357 20 3 1 347 1 351 0.0 583
Msa0753040 MtrunA17_Chr1g0169451 37.006 354 144 13 42 345 40 364 4.33e-52 176
Msa0753040 MtrunA17_Chr7g0249231 36.406 217 117 5 137 343 74 279 6.15e-28 110
Msa0753040 MtrunA17_Chr1g0210221 34.842 221 118 5 135 338 8 219 1.21e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753040 AT1G64150.1 68.013 297 66 5 76 346 76 369 8.33e-113 333
Msa0753040 AT4G13590.2 44.091 220 107 5 135 345 146 358 1.09e-49 170
Msa0753040 AT4G13590.1 44.091 220 107 5 135 345 146 358 1.21e-49 170
Msa0753040 AT5G36290.1 35.377 212 121 3 138 343 88 289 2.18e-28 112
Msa0753040 AT5G36290.2 35.377 212 121 3 138 343 88 289 2.18e-28 112
Msa0753040 AT1G68650.1 34.579 214 127 3 135 338 8 218 2.15e-24 99.8
Msa0753040 AT1G25520.1 33.784 222 120 5 135 338 8 220 2.30e-22 94.4

Find 65 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGGCTCTTAAATGATTT+TGG 0.089567 5_2:+6729045 None:intergenic
TTGAATTCAATTCCTATATT+TGG 0.111357 5_2:-6728621 Msa0753040:CDS
TGCAGCAGCTTCTTCACCCT+TGG 0.304179 5_2:-6725791 Msa0753040:CDS
TTGACGAACTCTTGCCGTTC+AGG 0.307648 5_2:-6727321 Msa0753040:intron
ATTGACTTCAGGTGTACTTC+GGG 0.333621 5_2:-6726463 Msa0753040:intron
GTACTTGGTGGCTCTTTACT+AGG 0.355968 5_2:-6725268 Msa0753040:CDS
TATTGCTGCTGTTTGCCTAT+TGG 0.359627 5_2:-6726696 Msa0753040:intron
TCACCCTTGGGAGTCATAGC+TGG 0.372547 5_2:-6725778 Msa0753040:CDS
CTTACTGGACATAGTTTATG+AGG 0.386755 5_2:+6722974 None:intergenic
GCAGCAGCTTCTTCACCCTT+GGG 0.388248 5_2:-6725790 Msa0753040:CDS
CTATTGTACAATTTCAAATA+CGG 0.406878 5_2:+6723110 None:intergenic
GCGGGACTTATCCAAGAAAC+TGG 0.418484 5_2:-6729191 Msa0753040:five_prime_UTR
TCACCGACATCTCCAAATAT+AGG 0.430048 5_2:+6728609 None:intergenic
CGCTCTTCAAGATACTTATC+CGG 0.435532 5_2:-6728673 Msa0753040:CDS
AATTGACTTCAGGTGTACTT+CGG 0.438568 5_2:-6726464 Msa0753040:intron
CACCGATAGTGAATGTCAAT+TGG 0.440392 5_2:-6728775 Msa0753040:CDS
CTTCGGGGTCTCTACCCTGC+TGG 0.449149 5_2:-6726447 Msa0753040:CDS
ACAGCAGCAATATCATCAAT+AGG 0.453364 5_2:+6726707 None:intergenic
TGGTCATGGTGTTGCAACTT+TGG 0.476822 5_2:-6725746 Msa0753040:intron
CACTAGATGAGGCATCCAGC+AGG 0.488503 5_2:+6726432 None:intergenic
CAGCGAAGAGGAGGAGGAGG+AGG 0.494395 5_2:+6728973 None:intergenic
TATATGCAGATAGCCGTACT+TGG 0.497430 5_2:-6725283 Msa0753040:intron
TCTTCTGATGACACTGATGA+TGG 0.499766 5_2:-6728738 Msa0753040:CDS
TAGTAAAGAGCCACCAAGTA+CGG 0.507339 5_2:+6725270 None:intergenic
AGATTGCAGCGAAGAGGAGG+AGG 0.516776 5_2:+6728967 None:intergenic
GGGAGTCATAGCTGGATCAC+TGG 0.523241 5_2:-6725770 Msa0753040:CDS
GTCATAGCTGGATCACTGGC+TGG 0.529444 5_2:-6725766 Msa0753040:CDS
GCTGGATCACTGGCTGGTCA+TGG 0.529965 5_2:-6725760 Msa0753040:CDS
TTGAAGGTTATAGCCTACAT+TGG 0.530825 5_2:-6723165 Msa0753040:intron
TTGCAGCGAAGAGGAGGAGG+AGG 0.532593 5_2:+6728970 None:intergenic
ACTTCAGCACTCACCAATTG+TGG 0.537826 5_2:+6726129 None:intergenic
ACTGTCATATCTGTCGCTCT+AGG 0.541366 5_2:-6727361 Msa0753040:CDS
TACTTGGTGGCTCTTTACTA+GGG 0.542656 5_2:-6725267 Msa0753040:CDS
AAGGTTATAGCCTACATTGG+AGG 0.545855 5_2:-6723162 Msa0753040:CDS
AAATCAGAAGCAGCAACTGC+CGG 0.549140 5_2:+6728654 None:intergenic
AAAATCAGATGATGAACAGA+AGG 0.549624 5_2:-6726402 Msa0753040:CDS
TTGAGATTGCAGCGAAGAGG+AGG 0.555266 5_2:+6728964 None:intergenic
AAAGAGCACACCTCCAATGT+AGG 0.555813 5_2:+6723152 None:intergenic
GGGTGAAGAAGCTGCTGCAA+GGG 0.562488 5_2:+6725795 None:intergenic
TTTATGAGGATTACAATGAA+AGG 0.566528 5_2:+6722988 None:intergenic
AGGGTGAAGAAGCTGCTGCA+AGG 0.572131 5_2:+6725794 None:intergenic
ATGCAGATAGCCGTACTTGG+TGG 0.574843 5_2:-6725280 Msa0753040:intron
TTAGCAGCTAGAAATTCAGC+TGG 0.576869 5_2:-6727826 Msa0753040:CDS
TGATCCAGCTATGACTCCCA+AGG 0.589560 5_2:+6725774 None:intergenic
ACAAAGGCATCAAGAATGTA+CGG 0.590745 5_2:-6723057 Msa0753040:intron
AGAAGAGGATATTAGTGAGG+TGG 0.592968 5_2:+6729008 None:intergenic
TTCGGCAACAGAATCATGAT+CGG 0.593303 5_2:+6728800 None:intergenic
AACAAGCAAGATGAGGTGGT+TGG 0.599386 5_2:-6729225 Msa0753040:five_prime_UTR
TGCCAATTGACATTCACTAT+CGG 0.600023 5_2:+6728773 None:intergenic
AAAAGTGCTGACAATTGTGC+TGG 0.600725 5_2:+6726195 None:intergenic
AATAGAAGAGGATATTAGTG+AGG 0.602456 5_2:+6729005 None:intergenic
GCAATATAAGCTATGTACAA+AGG 0.605103 5_2:-6723073 Msa0753040:three_prime_UTR
TGGTGAAAGATGAAAAGTGC+TGG 0.612688 5_2:+6729028 None:intergenic
ATCAGATGATGAACAGAAGG+AGG 0.612938 5_2:-6726399 Msa0753040:intron
ACTAGATGAGGCATCCAGCA+GGG 0.613791 5_2:+6726433 None:intergenic
AGATAACAAGCAAGATGAGG+TGG 0.614385 5_2:-6729229 Msa0753040:five_prime_UTR
AATTTGAGATTGCAGCGAAG+AGG 0.631973 5_2:+6728961 None:intergenic
AAGAGATAACAAGCAAGATG+AGG 0.643759 5_2:-6729232 Msa0753040:five_prime_UTR
TTGACTTCAGGTGTACTTCG+GGG 0.651651 5_2:-6726462 Msa0753040:intron
GATCCAGCTATGACTCCCAA+GGG 0.660586 5_2:+6725775 None:intergenic
TGGTTGGTTAATCTCGACGC+GGG 0.698210 5_2:-6729209 Msa0753040:five_prime_UTR
ATCTTGAAGAGCGAAGAACG+CGG 0.705375 5_2:+6728683 None:intergenic
ATGTTGGTGAATTGAAAGCG+TGG 0.711543 5_2:+6728934 None:intergenic
GTGGTTGGTTAATCTCGACG+CGG 0.711848 5_2:-6729210 Msa0753040:five_prime_UTR
TTGGTGAATTGAAAGCGTGG+TGG 0.759701 5_2:+6728937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTATATTATTTA+AGG - chr5_2:6727938-6727957 Msa0753040:intron 0.0%
!!! ATTTTCATTTGTAATAATAT+TGG + chr5_2:6723705-6723724 None:intergenic 10.0%
!! CTTGAATAATAAAAATAAAT+AGG + chr5_2:6724790-6724809 None:intergenic 10.0%
!! AGTGAATAAAATTAAAAAAA+CGG + chr5_2:6725895-6725914 None:intergenic 10.0%
!!! TATATTTTTTTTGTATAGTA+TGG + chr5_2:6727818-6727837 None:intergenic 10.0%
!!! TAAATTTTGAGTAATATTTA+AGG + chr5_2:6727849-6727868 None:intergenic 10.0%
!! TTGTTTAAGTATATTATTTA+AGG + chr5_2:6727999-6728018 None:intergenic 10.0%
!!! TATATTTTAATTTCTTTTGA+AGG - chr5_2:6729033-6729052 Msa0753040:CDS 10.0%
!!! TTTCTAATTCTTCTTTTTTT+GGG + chr5_2:6723111-6723130 None:intergenic 15.0%
!!! ATTTCTAATTCTTCTTTTTT+TGG + chr5_2:6723112-6723131 None:intergenic 15.0%
!! TTGTAATTATTAAAGTAACA+GGG + chr5_2:6723666-6723685 None:intergenic 15.0%
!! ATTGTAATTATTAAAGTAAC+AGG + chr5_2:6723667-6723686 None:intergenic 15.0%
!!! GAAAGATAATTATTTTTTAG+AGG - chr5_2:6724742-6724761 Msa0753040:intron 15.0%
!! TTGTAAAAATTAACATGAAA+AGG - chr5_2:6724959-6724978 Msa0753040:intron 15.0%
!! TGTAAAAATTAACATGAAAA+GGG - chr5_2:6724960-6724979 Msa0753040:intron 15.0%
!!! ATAATATTTTCTAGAAAACA+TGG + chr5_2:6725300-6725319 None:intergenic 15.0%
!! ACAATAAAATATAAATCCAA+AGG + chr5_2:6725342-6725361 None:intergenic 15.0%
!!! TTTTAAAACAGAAAATGTAA+AGG + chr5_2:6725708-6725727 None:intergenic 15.0%
!! GTGAATAAAATTAAAAAAAC+GGG + chr5_2:6725894-6725913 None:intergenic 15.0%
!!! AAAAAACTATTTTCTTCAAA+AGG - chr5_2:6727193-6727212 Msa0753040:intron 15.0%
!! GAATTTCATTAAAATAAGTA+TGG - chr5_2:6727271-6727290 Msa0753040:intron 15.0%
!!! ATAGCATTAAAATTTTCATA+TGG + chr5_2:6727429-6727448 None:intergenic 15.0%
!! AATCATTAAAAAAGATTTAG+AGG - chr5_2:6727544-6727563 Msa0753040:intron 15.0%
!! ATGAATAATATTAATACTTG+TGG + chr5_2:6727899-6727918 None:intergenic 15.0%
!!! TAGTATTTTTTTTAGCATTA+TGG + chr5_2:6728034-6728053 None:intergenic 15.0%
!! TTTCTTAAATACATTGTTTA+AGG + chr5_2:6728062-6728081 None:intergenic 15.0%
!!! AGTACATTGTTTTTAAATTA+TGG + chr5_2:6728195-6728214 None:intergenic 15.0%
!! TAAATCAATACAATACAAAA+CGG - chr5_2:6728610-6728629 Msa0753040:intron 15.0%
!!! TTCTAATTCTTCTTTTTTTG+GGG + chr5_2:6723110-6723129 None:intergenic 20.0%
!! TGAAAATGAAAATACATTTG+AGG + chr5_2:6723373-6723392 None:intergenic 20.0%
!!! ATGTATTTTCATTTTCACAT+AGG - chr5_2:6723376-6723395 Msa0753040:intron 20.0%
!!! TGTATTTTCATTTTCACATA+GGG - chr5_2:6723377-6723396 Msa0753040:intron 20.0%
!! TTGAATTCAATTCCTATATT+TGG - chr5_2:6723593-6723612 Msa0753040:intron 20.0%
!! TAAGATTTATTCGAAGAATT+TGG - chr5_2:6724286-6724305 Msa0753040:intron 20.0%
!! TATTGATGAGATAAAAATGA+AGG - chr5_2:6724310-6724329 Msa0753040:intron 20.0%
!! ATTGATGAGATAAAAATGAA+GGG - chr5_2:6724311-6724330 Msa0753040:intron 20.0%
!! ACAACTTAGAATAATGAAAT+TGG - chr5_2:6724573-6724592 Msa0753040:intron 20.0%
!!! TCAATTAATTTGCTTGTTTT+TGG - chr5_2:6724820-6724839 Msa0753040:intron 20.0%
!! AAATAAAAACACAGAGATAA+AGG + chr5_2:6724924-6724943 None:intergenic 20.0%
!! ATTATGACAAAACTGTTATA+AGG + chr5_2:6725179-6725198 None:intergenic 20.0%
!!! AATACAACTTCAAATTCTTT+TGG - chr5_2:6725196-6725215 Msa0753040:intron 20.0%
!!! ATACAACTTCAAATTCTTTT+GGG - chr5_2:6725197-6725216 Msa0753040:intron 20.0%
!! TAAAATATAAATCCAAAGGA+AGG + chr5_2:6725338-6725357 None:intergenic 20.0%
!! GTATTACAAGTTATAAAGAA+TGG - chr5_2:6725428-6725447 Msa0753040:intron 20.0%
!!! AACACAAATGCAATTTTTTT+GGG + chr5_2:6725664-6725683 None:intergenic 20.0%
!!! AAACACAAATGCAATTTTTT+TGG + chr5_2:6725665-6725684 None:intergenic 20.0%
!!! TAAAAAAGTACTTGTATATC+TGG + chr5_2:6725869-6725888 None:intergenic 20.0%
!!! TTTTGTTTTTTGATCTTGTT+GGG + chr5_2:6726764-6726783 None:intergenic 20.0%
!!! ATTTTGTTTTTTGATCTTGT+TGG + chr5_2:6726765-6726784 None:intergenic 20.0%
!! TAAACTTTCCATAATAGTTA+AGG + chr5_2:6726818-6726837 None:intergenic 20.0%
!! TGTATATCTCTAAATAACTT+TGG - chr5_2:6726886-6726905 Msa0753040:intron 20.0%
!! GTATATCTCTAAATAACTTT+GGG - chr5_2:6726887-6726906 Msa0753040:intron 20.0%
!! CTATTGTACAATTTCAAATA+CGG + chr5_2:6729107-6729126 None:intergenic 20.0%
! AATGAAATGAAGTTGAAGAT+AGG + chr5_2:6723335-6723354 None:intergenic 25.0%
! TAGCTTATGAAAAGAACTTA+TGG + chr5_2:6723857-6723876 None:intergenic 25.0%
! CTTATTTCCATAAACTATTC+AGG + chr5_2:6723881-6723900 None:intergenic 25.0%
!!! GAACTTTTGGAAACAATTTA+TGG + chr5_2:6723926-6723945 None:intergenic 25.0%
!!! ATTGTTTTATGCTTTATCAC+AGG - chr5_2:6724089-6724108 Msa0753040:intron 25.0%
!!! TTTCATCATTGTTTTGCATT+TGG + chr5_2:6724227-6724246 None:intergenic 25.0%
! AAATGCAAAACAATGATGAA+AGG - chr5_2:6724226-6724245 Msa0753040:intron 25.0%
! TCGAATAAATCTTAACAGAA+AGG + chr5_2:6724280-6724299 None:intergenic 25.0%
! TTGATGAGATAAAAATGAAG+GGG - chr5_2:6724312-6724331 Msa0753040:intron 25.0%
! AAACAAAGAACAAAACACAA+GGG + chr5_2:6724478-6724497 None:intergenic 25.0%
! AAAACAAAGAACAAAACACA+AGG + chr5_2:6724479-6724498 None:intergenic 25.0%
!!! TGTTTTGTTCTTTGTTTTGA+AGG - chr5_2:6724481-6724500 Msa0753040:intron 25.0%
!!! CTCTGTGTTTTTATTTTGAA+TGG - chr5_2:6724928-6724947 Msa0753040:intron 25.0%
! ACCAAAGATAAATAACACAA+GGG + chr5_2:6725051-6725070 None:intergenic 25.0%
! TACCAAAGATAAATAACACA+AGG + chr5_2:6725052-6725071 None:intergenic 25.0%
! AGCAATATAATGAACACTAT+TGG - chr5_2:6725101-6725120 Msa0753040:intron 25.0%
! TTAATCATCTGCAAAAAGAA+TGG - chr5_2:6725229-6725248 Msa0753040:intron 25.0%
!! TTTCTAGAAAACATGGAATT+TGG + chr5_2:6725293-6725312 None:intergenic 25.0%
!! TTAAGATTTCAATTGACTTC+AGG - chr5_2:6725740-6725759 Msa0753040:intron 25.0%
!!! AAATCATTTTTCTCCACAAT+TGG - chr5_2:6726072-6726091 Msa0753040:intron 25.0%
!!! CATGTATTAGTTTGTTTGAT+AGG + chr5_2:6726207-6726226 None:intergenic 25.0%
! ATCAAACAAACTAATACATG+AGG - chr5_2:6726207-6726226 Msa0753040:CDS 25.0%
! TCAAACAAACTAATACATGA+GGG - chr5_2:6726208-6726227 Msa0753040:CDS 25.0%
!! AGTAGTATTTTATTACGCTT+CGG - chr5_2:6726581-6726600 Msa0753040:intron 25.0%
!! GATTTTTATTGCACTTTAGT+TGG + chr5_2:6726642-6726661 None:intergenic 25.0%
!! TAGAATGTTTATAAAGCACT+TGG + chr5_2:6726667-6726686 None:intergenic 25.0%
!!! TTTGTTTTTTGATCTTGTTG+GGG + chr5_2:6726763-6726782 None:intergenic 25.0%
! GATGAAAATAAATCTACATG+AGG - chr5_2:6726788-6726807 Msa0753040:intron 25.0%
!!! TTTTTGAAATGGAAAAAACC+AGG + chr5_2:6727052-6727071 None:intergenic 25.0%
!!! GGTTTTTTCCATTTCAAAAA+TGG - chr5_2:6727052-6727071 Msa0753040:intron 25.0%
! AGATTCGTTAAACAATGTAA+AGG - chr5_2:6727126-6727145 Msa0753040:intron 25.0%
!! ATTTCTCTAATAGTTTTCCT+AGG + chr5_2:6727527-6727546 None:intergenic 25.0%
! GTTCTATCATAAACCAAATT+TGG + chr5_2:6727584-6727603 None:intergenic 25.0%
! GCAAAATGACAAATAATAGT+AGG - chr5_2:6728450-6728469 Msa0753040:intron 25.0%
!!! ATGTAGTATTACCGTTTTTT+AGG + chr5_2:6728489-6728508 None:intergenic 25.0%
! TTTATGAGGATTACAATGAA+AGG + chr5_2:6729229-6729248 None:intergenic 25.0%
AATAGAAGAGGATATTAGTG+AGG + chr5_2:6723212-6723231 None:intergenic 30.0%
! TCAATTCACCAACATTTTTC+AGG - chr5_2:6723288-6723307 Msa0753040:intron 30.0%
ATTCCTATATTTGGAGATGT+CGG - chr5_2:6723602-6723621 Msa0753040:intron 30.0%
!! AGTTATTTCTGTTGTAGTTG+CGG - chr5_2:6723741-6723760 Msa0753040:intron 30.0%
!! TCATTTATTTAGGCCTTGTT+TGG - chr5_2:6723764-6723783 Msa0753040:intron 30.0%
AAGCTATCCTGAATAGTTTA+TGG - chr5_2:6723871-6723890 Msa0753040:intron 30.0%
ATACAACAGTTTCCACATTA+GGG + chr5_2:6723999-6724018 None:intergenic 30.0%
TATACAACAGTTTCCACATT+AGG + chr5_2:6724000-6724019 None:intergenic 30.0%
! CTGATATTTTTCTCTGAACT+GGG - chr5_2:6724120-6724139 Msa0753040:intron 30.0%
TGATGAGATAAAAATGAAGG+GGG - chr5_2:6724313-6724332 Msa0753040:intron 30.0%
TTGCATCAACTTATCAACAA+TGG + chr5_2:6724525-6724544 None:intergenic 30.0%
TTGAAGTCTAGTGATATTGT+TGG + chr5_2:6724629-6724648 None:intergenic 30.0%
ACAATATCACTAGACTTCAA+TGG - chr5_2:6724629-6724648 Msa0753040:intron 30.0%
!!! TTAATTTGCTTGTTTTTGGC+AGG - chr5_2:6724824-6724843 Msa0753040:intron 30.0%
!!! TAATTTGCTTGTTTTTGGCA+GGG - chr5_2:6724825-6724844 Msa0753040:intron 30.0%
AGATAAAGGAAAAACCTGAA+CGG + chr5_2:6724910-6724929 None:intergenic 30.0%
!! ACCCTTGTGTTATTTATCTT+TGG - chr5_2:6725047-6725066 Msa0753040:intron 30.0%
AGACATATGAAAAGTGAACA+TGG - chr5_2:6725078-6725097 Msa0753040:intron 30.0%
TGACAAAACTGTTATAAGGT+TGG + chr5_2:6725175-6725194 None:intergenic 30.0%
CTGATCTGACTAATATTCTT+AGG - chr5_2:6725400-6725419 Msa0753040:intron 30.0%
TTCTTTCGAACTCATCTAAT+AGG - chr5_2:6725452-6725471 Msa0753040:intron 30.0%
!! TCTAATAGGTTAATTTGCAC+AGG - chr5_2:6725466-6725485 Msa0753040:intron 30.0%
GGACTAAGATAGTTTATGTA+AGG - chr5_2:6725607-6725626 Msa0753040:intron 30.0%
! AATTGCATTTGTGTTTGCTA+TGG - chr5_2:6725669-6725688 Msa0753040:intron 30.0%
!!! CTGTTTTAAAATTGAACACG+TGG - chr5_2:6725717-6725736 Msa0753040:intron 30.0%
! TCTGTTCATCATCTGATTTT+TGG + chr5_2:6725812-6725831 None:intergenic 30.0%
AAAATCAGATGATGAACAGA+AGG - chr5_2:6725812-6725831 Msa0753040:intron 30.0%
AGGAGGTAATATTTGGTATT+TGG - chr5_2:6725832-6725851 Msa0753040:intron 30.0%
! TGACGATATTTTCTATGCAA+TGG - chr5_2:6725925-6725944 Msa0753040:intron 30.0%
! TTAGCAGTTTCTGATTTTTC+TGG - chr5_2:6725970-6725989 Msa0753040:intron 30.0%
!! TTTGGAGCAAGATGTTTTTA+TGG + chr5_2:6726181-6726200 None:intergenic 30.0%
!! AGTTTGTTTGATAGGTCTTT+TGG + chr5_2:6726199-6726218 None:intergenic 30.0%
ATTGACGCATCTTCTAAATA+TGG - chr5_2:6726508-6726527 Msa0753040:intron 30.0%
TTGACGCATCTTCTAAATAT+GGG - chr5_2:6726509-6726528 Msa0753040:intron 30.0%
! GTAGTATTTTATTACGCTTC+GGG - chr5_2:6726582-6726601 Msa0753040:intron 30.0%
CAAATTTGGATTTGCCAAAA+TGG - chr5_2:6726616-6726635 Msa0753040:intron 30.0%
!!! TTGTTTTTTGATCTTGTTGG+GGG + chr5_2:6726762-6726781 None:intergenic 30.0%
GAGGAAAACCTTAACTATTA+TGG - chr5_2:6726807-6726826 Msa0753040:intron 30.0%
GCTATCTGCATATAAAAGAA+AGG + chr5_2:6726925-6726944 None:intergenic 30.0%
!! ATTCTGGTCCATTTTTGAAA+TGG + chr5_2:6727063-6727082 None:intergenic 30.0%
AATACCCAATTTACGAATTC+TGG + chr5_2:6727079-6727098 None:intergenic 30.0%
! GTAAAGGAAAGTGAGATTTT+AGG - chr5_2:6727142-6727161 Msa0753040:intron 30.0%
TACCTATAGAATATAGGTCA+TGG - chr5_2:6727219-6727238 Msa0753040:intron 30.0%
TTCCATGACCTATATTCTAT+AGG + chr5_2:6727224-6727243 None:intergenic 30.0%
! TTTTCCTAGGTCTTCAAAAA+CGG + chr5_2:6727514-6727533 None:intergenic 30.0%
TGGTTTATGATAGAACACTA+TGG - chr5_2:6727588-6727607 Msa0753040:intron 30.0%
GCAATATAAGCTATGTACAA+AGG - chr5_2:6729141-6729160 Msa0753040:five_prime_UTR 30.0%
AAGAGATAACAAGCAAGATG+AGG - chr5_2:6722982-6723001 Msa0753040:three_prime_UTR 35.0%
!! TCTCTGTTTTTCCAGTTTCT+TGG + chr5_2:6723037-6723056 None:intergenic 35.0%
!!! ATTCTTCTTTTTTTGGGGAG+AGG + chr5_2:6723105-6723124 None:intergenic 35.0%
!!! TGCTGGCTCTTAAATGATTT+TGG + chr5_2:6723172-6723191 None:intergenic 35.0%
!!! CAACATTTTTCAGGCTACAA+CGG - chr5_2:6723297-6723316 Msa0753040:intron 35.0%
GAAATGAAGTTGAAGATAGG+TGG + chr5_2:6723332-6723351 None:intergenic 35.0%
!! ACATTCACTATCGGTGTTTT+CGG + chr5_2:6723435-6723454 None:intergenic 35.0%
TGCCAATTGACATTCACTAT+CGG + chr5_2:6723444-6723463 None:intergenic 35.0%
GTAGTTGCGGTCATTTATTT+AGG - chr5_2:6723754-6723773 Msa0753040:intron 35.0%
CTAAGGTGTATATCCAAACA+AGG + chr5_2:6723780-6723799 None:intergenic 35.0%
ATGCTATAAGCGCTTAACTA+AGG + chr5_2:6723797-6723816 None:intergenic 35.0%
!!! AGACTGTTTTGGAGAACTTT+TGG + chr5_2:6723939-6723958 None:intergenic 35.0%
! GCTGATATTTTTCTCTGAAC+TGG - chr5_2:6724119-6724138 Msa0753040:intron 35.0%
GATGAGATAAAAATGAAGGG+GGG - chr5_2:6724314-6724333 Msa0753040:intron 35.0%
TGAGTGTTTGATGTTTATGC+AGG - chr5_2:6724360-6724379 Msa0753040:intron 35.0%
GCATTTGTACAAAACTCTTC+AGG - chr5_2:6724690-6724709 Msa0753040:intron 35.0%
! CTGTTATAAGGTTGGTCAAA+AGG + chr5_2:6725167-6725186 None:intergenic 35.0%
TTTACTTCTACTCCTTCCTT+TGG - chr5_2:6725323-6725342 Msa0753040:intron 35.0%
TCAGATCAGATAGTCAGATT+AGG + chr5_2:6725389-6725408 None:intergenic 35.0%
!! TAGGTTAATTTGCACAGGTT+TGG - chr5_2:6725471-6725490 Msa0753040:intron 35.0%
ACAGCAGCAATATCATCAAT+AGG + chr5_2:6725510-6725529 None:intergenic 35.0%
ATGGAGGTGAATTTACCAAT+AGG + chr5_2:6725536-6725555 None:intergenic 35.0%
TATGTAAACGCGGTAGTATT+AGG - chr5_2:6725559-6725578 Msa0753040:intron 35.0%
! AATTGACTTCAGGTGTACTT+CGG - chr5_2:6725750-6725769 Msa0753040:CDS 35.0%
!!! TTTTTGGCTATCACTAGATG+AGG + chr5_2:6725796-6725815 None:intergenic 35.0%
GAACAGAAGGAGGTAATATT+TGG - chr5_2:6725825-6725844 Msa0753040:intron 35.0%
!! GTTTCTGATTTTTCTGGAGA+CGG - chr5_2:6725976-6725995 Msa0753040:intron 35.0%
!! TCTTAGTTTTTGTTGCTGAG+TGG - chr5_2:6726043-6726062 Msa0753040:intron 35.0%
!! CTTAGTTTTTGTTGCTGAGT+GGG - chr5_2:6726044-6726063 Msa0753040:intron 35.0%
!! TTAGTTTTTGTTGCTGAGTG+GGG - chr5_2:6726045-6726064 Msa0753040:intron 35.0%
! CTGACTTGAACCAGTTAATT+TGG - chr5_2:6726257-6726276 Msa0753040:intron 35.0%
! TTGCACTGATCCAAATTAAC+TGG + chr5_2:6726270-6726289 None:intergenic 35.0%
TGACGCATCTTCTAAATATG+GGG - chr5_2:6726510-6726529 Msa0753040:intron 35.0%
TGAAACTGCTTAAAGAGTTC+CGG - chr5_2:6726701-6726720 Msa0753040:CDS 35.0%
GTACCAAATCTAGGTCATTA+GGG + chr5_2:6726740-6726759 None:intergenic 35.0%
AAACCACAGTATATCAGGAA+CGG + chr5_2:6727015-6727034 None:intergenic 35.0%
CTAACAAACCACAGTATATC+AGG + chr5_2:6727020-6727039 None:intergenic 35.0%
! GTTTGTTAGTTTCAACTTCC+TGG - chr5_2:6727031-6727050 Msa0753040:intron 35.0%
ATGGACCAGAATTCGTAAAT+TGG - chr5_2:6727071-6727090 Msa0753040:intron 35.0%
TGGACCAGAATTCGTAAATT+GGG - chr5_2:6727072-6727091 Msa0753040:intron 35.0%
! AGGTGCTACCTATAGAATAT+AGG - chr5_2:6727213-6727232 Msa0753040:intron 35.0%
! TCTGTGGATAATTTTCTGCA+CGG - chr5_2:6727248-6727267 Msa0753040:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr5_2:6727556-6727575 Msa0753040:intron 35.0%
! CAATGAGTTGGATCCAAATT+TGG - chr5_2:6727568-6727587 Msa0753040:intron 35.0%
TGATAGCATAGTTGTCAAAG+CGG - chr5_2:6727685-6727704 Msa0753040:intron 35.0%
!!! AACGACTGTGTTTTGGTTTT+TGG + chr5_2:6728721-6728740 None:intergenic 35.0%
! AAACCAAAACACAGTCGTTT+TGG - chr5_2:6728722-6728741 Msa0753040:CDS 35.0%
CCAAACAGATACACAAATGT+AGG + chr5_2:6728979-6728998 None:intergenic 35.0%
CCTACATTTGTGTATCTGTT+TGG - chr5_2:6728976-6728995 Msa0753040:CDS 35.0%
! TTTTAGTCTGTTGCTGTATG+AGG + chr5_2:6729009-6729028 None:intergenic 35.0%
TTGAAGGTTATAGCCTACAT+TGG - chr5_2:6729049-6729068 Msa0753040:CDS 35.0%
!! ACAAAGGCATCAAGAATGTA+CGG - chr5_2:6729157-6729176 Msa0753040:five_prime_UTR 35.0%
AGATAACAAGCAAGATGAGG+TGG - chr5_2:6722985-6723004 Msa0753040:three_prime_UTR 40.0%
! TGGTGAAAGATGAAAAGTGC+TGG + chr5_2:6723189-6723208 None:intergenic 40.0%
AGAAGAGGATATTAGTGAGG+TGG + chr5_2:6723209-6723228 None:intergenic 40.0%
AGGAGGAGGAAAAATAGAAG+AGG + chr5_2:6723224-6723243 None:intergenic 40.0%
! AATTTGAGATTGCAGCGAAG+AGG + chr5_2:6723256-6723275 None:intergenic 40.0%
! ATGTTGGTGAATTGAAAGCG+TGG + chr5_2:6723283-6723302 None:intergenic 40.0%
CGTTGTAGCCTGAAAAATGT+TGG + chr5_2:6723299-6723318 None:intergenic 40.0%
ATGAAGTTGAAGATAGGTGG+AGG + chr5_2:6723329-6723348 None:intergenic 40.0%
TTCGGCAACAGAATCATGAT+CGG + chr5_2:6723417-6723436 None:intergenic 40.0%
CACCGATAGTGAATGTCAAT+TGG - chr5_2:6723439-6723458 Msa0753040:intron 40.0%
TCTTCTGATGACACTGATGA+TGG - chr5_2:6723476-6723495 Msa0753040:intron 40.0%
CGCTCTTCAAGATACTTATC+CGG - chr5_2:6723541-6723560 Msa0753040:intron 40.0%
TCACCGACATCTCCAAATAT+AGG + chr5_2:6723608-6723627 None:intergenic 40.0%
! CAACACTAGTGAGACTGTTT+TGG + chr5_2:6723950-6723969 None:intergenic 40.0%
AACAGATACAGACCCTAATG+TGG - chr5_2:6723984-6724003 Msa0753040:intron 40.0%
TTAGCAGCTAGAAATTCAGC+TGG - chr5_2:6724388-6724407 Msa0753040:intron 40.0%
!! GTTGTTTTCGTTGGGACATT+TGG - chr5_2:6724412-6724431 Msa0753040:intron 40.0%
TGATGCAATGCAAGCAATTG+TGG - chr5_2:6724537-6724556 Msa0753040:intron 40.0%
CAGGCTTATATTGTGTCTAG+AGG - chr5_2:6724709-6724728 Msa0753040:intron 40.0%
! TATTGCTGCTGTTTGCCTAT+TGG - chr5_2:6725518-6725537 Msa0753040:intron 40.0%
CCTCCATGTTTATGTAAACG+CGG - chr5_2:6725549-6725568 Msa0753040:intron 40.0%
CTACCGCGTTTACATAAACA+TGG + chr5_2:6725555-6725574 None:intergenic 40.0%
! ATTGACTTCAGGTGTACTTC+GGG - chr5_2:6725751-6725770 Msa0753040:CDS 40.0%
ATCAGATGATGAACAGAAGG+AGG - chr5_2:6725815-6725834 Msa0753040:intron 40.0%
CAATGGTTCCTACATTAACC+AGG - chr5_2:6725942-6725961 Msa0753040:intron 40.0%
TAACTCTGCCTGGTTAATGT+AGG + chr5_2:6725953-6725972 None:intergenic 40.0%
!! AAAAGTGCTGACAATTGTGC+TGG + chr5_2:6726022-6726041 None:intergenic 40.0%
GGGAACAGCAAGTACAAATT+TGG - chr5_2:6726602-6726621 Msa0753040:intron 40.0%
! TGCACTTTAGTTGGCCATTT+TGG + chr5_2:6726633-6726652 None:intergenic 40.0%
CTTCCCTAATGACCTAGATT+TGG - chr5_2:6726734-6726753 Msa0753040:intron 40.0%
GGTACCAAATCTAGGTCATT+AGG + chr5_2:6726741-6726760 None:intergenic 40.0%
TATATGCAGATAGCCGTACT+TGG - chr5_2:6726931-6726950 Msa0753040:intron 40.0%
TAGTAAAGAGCCACCAAGTA+CGG + chr5_2:6726947-6726966 None:intergenic 40.0%
! TACTTGGTGGCTCTTTACTA+GGG - chr5_2:6726947-6726966 Msa0753040:intron 40.0%
TAGGTCATGGAAATCTTCTG+TGG - chr5_2:6727232-6727251 Msa0753040:intron 40.0%
! CTGTGGATAATTTTCTGCAC+GGG - chr5_2:6727249-6727268 Msa0753040:intron 40.0%
TGTTCTTTCGCAGAAAACTC+CGG + chr5_2:6727329-6727348 None:intergenic 40.0%
CTTAATAACCCCAACCAACA+GGG + chr5_2:6727391-6727410 None:intergenic 40.0%
TCTTAATAACCCCAACCAAC+AGG + chr5_2:6727392-6727411 None:intergenic 40.0%
!! TTGACCGTTTTTGAAGACCT+AGG - chr5_2:6727507-6727526 Msa0753040:intron 40.0%
ACAGCTGTGTGCCTAAAAAA+CGG - chr5_2:6728475-6728494 Msa0753040:intron 40.0%
!!! GTGTTTTGGTTTTTGGAGGT+GGG + chr5_2:6728714-6728733 None:intergenic 40.0%
!!! TGTGTTTTGGTTTTTGGAGG+TGG + chr5_2:6728715-6728734 None:intergenic 40.0%
!!! GACTGTGTTTTGGTTTTTGG+AGG + chr5_2:6728718-6728737 None:intergenic 40.0%
AAGGTTATAGCCTACATTGG+AGG - chr5_2:6729052-6729071 Msa0753040:CDS 40.0%
AACAAGCAAGATGAGGTGGT+TGG - chr5_2:6722989-6723008 Msa0753040:three_prime_UTR 45.0%
! TTGGTGAATTGAAAGCGTGG+TGG + chr5_2:6723280-6723299 None:intergenic 45.0%
ATCTTGAAGAGCGAAGAACG+CGG + chr5_2:6723534-6723553 None:intergenic 45.0%
AAATCAGAAGCAGCAACTGC+CGG + chr5_2:6723563-6723582 None:intergenic 45.0%
! GCTGCTTCTGATTTTGCTAC+TGG - chr5_2:6723569-6723588 Msa0753040:intron 45.0%
! GCACAGGTTTTGCTTCAGTT+AGG - chr5_2:6723633-6723652 Msa0753040:intron 45.0%
AAAATGAAGGGGGGAAGTTC+TGG - chr5_2:6724323-6724342 Msa0753040:intron 45.0%
!!! TCAGCTGGTGTTGTTTTCGT+TGG - chr5_2:6724403-6724422 Msa0753040:intron 45.0%
!!! CAGCTGGTGTTGTTTTCGTT+GGG - chr5_2:6724404-6724423 Msa0753040:intron 45.0%
ACTGTCATATCTGTCGCTCT+AGG - chr5_2:6724853-6724872 Msa0753040:intron 45.0%
TAACATGAAAAGGGCCCAAC+CGG - chr5_2:6724969-6724988 Msa0753040:intron 45.0%
GCATTTGACTGCAGATCAAG+AGG + chr5_2:6725009-6725028 None:intergenic 45.0%
AATGCTCTACCACTGAGCTA+TGG - chr5_2:6725024-6725043 Msa0753040:intron 45.0%
CCGCGTTTACATAAACATGG+AGG + chr5_2:6725552-6725571 None:intergenic 45.0%
TAGGATTGAGCTAGTGGTGA+AGG - chr5_2:6725586-6725605 Msa0753040:intron 45.0%
TTGACTTCAGGTGTACTTCG+GGG - chr5_2:6725752-6725771 Msa0753040:CDS 45.0%
!! ATTTTTCTGGAGACGGTGCT+GGG - chr5_2:6725983-6726002 Msa0753040:intron 45.0%
ACTTCAGCACTCACCAATTG+TGG + chr5_2:6726088-6726107 None:intergenic 45.0%
!! CAATTGGTGAGTGCTGAAGT+TGG - chr5_2:6726088-6726107 Msa0753040:intron 45.0%
TGCAAGGGCTAAATAGTAGG+AGG + chr5_2:6726407-6726426 None:intergenic 45.0%
TGCTGCAAGGGCTAAATAGT+AGG + chr5_2:6726410-6726429 None:intergenic 45.0%
!! TGGTCATGGTGTTGCAACTT+TGG - chr5_2:6726468-6726487 Msa0753040:intron 45.0%
TTAGGGAAGAGATAGCTCAC+CGG + chr5_2:6726723-6726742 None:intergenic 45.0%
!! TTGTTGGGGGTACCAAATCT+AGG + chr5_2:6726749-6726768 None:intergenic 45.0%
! GTACTTGGTGGCTCTTTACT+AGG - chr5_2:6726946-6726965 Msa0753040:intron 45.0%
CATCCGTTCCTGATATACTG+TGG - chr5_2:6727009-6727028 Msa0753040:intron 45.0%
ATGATGTGAAGTCTCCCTGT+TGG - chr5_2:6727374-6727393 Msa0753040:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_2:6727637-6727656 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_2:6727638-6727657 None:intergenic 45.0%
TAGTTGTCAAAGCGGAAACG+CGG - chr5_2:6727693-6727712 Msa0753040:intron 45.0%
CTCTCTCCTTCAGATCTAAC+AGG - chr5_2:6728686-6728705 Msa0753040:CDS 45.0%
TGGGTTCCTGTTAGATCTGA+AGG + chr5_2:6728695-6728714 None:intergenic 45.0%
! GAGCCAAAACGACTGTGTTT+TGG + chr5_2:6728728-6728747 None:intergenic 45.0%
! TTTGTGAAAAGCGGGTTTCG+CGG + chr5_2:6728835-6728854 None:intergenic 45.0%
TCAAGCTCTGTTGTCAAACG+CGG + chr5_2:6728931-6728950 None:intergenic 45.0%
! AGTGCCTTGCATTTGAAGCA+TGG - chr5_2:6728952-6728971 Msa0753040:CDS 45.0%
AGGTCCATGCTTCAAATGCA+AGG + chr5_2:6728959-6728978 None:intergenic 45.0%
! AAAGAGCACACCTCCAATGT+AGG + chr5_2:6729065-6729084 None:intergenic 45.0%
!! AATAAAATAAAAAATTGATA+AGG - chr5_2:6728418-6728437 Msa0753040:intron 5.0%
!! ATAAAATAAAAAATTGATAA+GGG - chr5_2:6728419-6728438 Msa0753040:intron 5.0%
! GTGGTTGGTTAATCTCGACG+CGG - chr5_2:6723004-6723023 Msa0753040:three_prime_UTR 50.0%
! TGGTTGGTTAATCTCGACGC+GGG - chr5_2:6723005-6723024 Msa0753040:three_prime_UTR 50.0%
GCGGGACTTATCCAAGAAAC+TGG - chr5_2:6723023-6723042 Msa0753040:intron 50.0%
TTGAGATTGCAGCGAAGAGG+AGG + chr5_2:6723253-6723272 None:intergenic 50.0%
GATGTCGGTGACTTAAGCAC+AGG - chr5_2:6723617-6723636 Msa0753040:intron 50.0%
TTGACGAACTCTTGCCGTTC+AGG - chr5_2:6724893-6724912 Msa0753040:intron 50.0%
AACATGAAAAGGGCCCAACC+GGG - chr5_2:6724970-6724989 Msa0753040:intron 50.0%
ACTGCAGATCAAGAGGTCAC+CGG + chr5_2:6725002-6725021 None:intergenic 50.0%
CGCGGTAGTATTAGGTCACT+AGG - chr5_2:6725567-6725586 Msa0753040:intron 50.0%
GGTCACTAGGATTGAGCTAG+TGG - chr5_2:6725580-6725599 Msa0753040:intron 50.0%
! ACTAGATGAGGCATCCAGCA+GGG + chr5_2:6725784-6725803 None:intergenic 50.0%
CAGAAACTGCTAACTCTGCC+TGG + chr5_2:6725963-6725982 None:intergenic 50.0%
!! GATTTTTCTGGAGACGGTGC+TGG - chr5_2:6725982-6726001 Msa0753040:intron 50.0%
GATCCAGCTATGACTCCCAA+GGG + chr5_2:6726442-6726461 None:intergenic 50.0%
TGATCCAGCTATGACTCCCA+AGG + chr5_2:6726443-6726462 None:intergenic 50.0%
ATGCAGATAGCCGTACTTGG+TGG - chr5_2:6726934-6726953 Msa0753040:intron 50.0%
GCGCAACATGTTAGATGCTC+CGG - chr5_2:6727307-6727326 Msa0753040:intron 50.0%
TGTGAAGTCTCCCTGTTGGT+TGG - chr5_2:6727378-6727397 Msa0753040:intron 50.0%
! GTGAAGTCTCCCTGTTGGTT+GGG - chr5_2:6727379-6727398 Msa0753040:intron 50.0%
! TGAAGTCTCCCTGTTGGTTG+GGG - chr5_2:6727380-6727399 Msa0753040:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_2:6727633-6727652 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_2:6727639-6727658 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_2:6727636-6727655 Msa0753040:intron 50.0%
AGGAAGGAGAAGGAAGAGGA+AGG + chr5_2:6728652-6728671 None:intergenic 50.0%
GAAGAGGAAGGAGAAGGAAG+AGG + chr5_2:6728656-6728675 None:intergenic 50.0%
ATCTGAAGGAGAGAGACGAC+AGG + chr5_2:6728681-6728700 None:intergenic 50.0%
GGTCGGATCACAAAACGAGT+GGG + chr5_2:6728756-6728775 None:intergenic 50.0%
TGGTCGGATCACAAAACGAG+TGG + chr5_2:6728757-6728776 None:intergenic 50.0%
! ACTCGTTTTGTGATCCGACC+AGG - chr5_2:6728756-6728775 Msa0753040:CDS 50.0%
TGTGATCCGACCAGGAATAG+CGG - chr5_2:6728764-6728783 Msa0753040:CDS 50.0%
GTAGCGCGTTTGTGAAAAGC+GGG + chr5_2:6728843-6728862 None:intergenic 50.0%
CGTAGCGCGTTTGTGAAAAG+CGG + chr5_2:6728844-6728863 None:intergenic 50.0%
! CTTTTCACAAACGCGCTACG+CGG - chr5_2:6728844-6728863 Msa0753040:intron 50.0%
AGATTGCAGCGAAGAGGAGG+AGG + chr5_2:6723250-6723269 None:intergenic 55.0%
CACAAGGGTCCATAGCTCAG+TGG + chr5_2:6725036-6725055 None:intergenic 55.0%
! CACTAGATGAGGCATCCAGC+AGG + chr5_2:6725785-6725804 None:intergenic 55.0%
GGGTGAAGAAGCTGCTGCAA+GGG + chr5_2:6726422-6726441 None:intergenic 55.0%
AGGGTGAAGAAGCTGCTGCA+AGG + chr5_2:6726423-6726442 None:intergenic 55.0%
TGCAGCAGCTTCTTCACCCT+TGG - chr5_2:6726423-6726442 Msa0753040:CDS 55.0%
GCAGCAGCTTCTTCACCCTT+GGG - chr5_2:6726424-6726443 Msa0753040:CDS 55.0%
TCACCCTTGGGAGTCATAGC+TGG - chr5_2:6726436-6726455 Msa0753040:CDS 55.0%
GGGAGTCATAGCTGGATCAC+TGG - chr5_2:6726444-6726463 Msa0753040:CDS 55.0%
GTCATAGCTGGATCACTGGC+TGG - chr5_2:6726448-6726467 Msa0753040:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_2:6727625-6727644 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_2:6727624-6727643 Msa0753040:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_2:6727625-6727644 Msa0753040:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_2:6727631-6727650 Msa0753040:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - chr5_2:6727724-6727743 Msa0753040:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG + chr5_2:6727733-6727752 None:intergenic 55.0%
! TACCGCGCCGCGTCAATTTT+TGG + chr5_2:6727734-6727753 None:intergenic 55.0%
CAGGAGGAAGAGGAAGGAGA+AGG + chr5_2:6728662-6728681 None:intergenic 55.0%
AGACGACAGGAGGAAGAGGA+AGG + chr5_2:6728668-6728687 None:intergenic 55.0%
AGAGAGACGACAGGAGGAAG+AGG + chr5_2:6728672-6728691 None:intergenic 55.0%
TGAAGGAGAGAGACGACAGG+AGG + chr5_2:6728678-6728697 None:intergenic 55.0%
!! CTGACGCGGCAAGCTGATTT+TGG - chr5_2:6728874-6728893 Msa0753040:intron 55.0%
TTGCAGCGAAGAGGAGGAGG+AGG + chr5_2:6723247-6723266 None:intergenic 60.0%
!! TCACCGGTTCGAACCCGGTT+GGG + chr5_2:6724986-6725005 None:intergenic 60.0%
!! AGAGGTCACCGGTTCGAACC+CGG + chr5_2:6724991-6725010 None:intergenic 60.0%
! GCTGGATCACTGGCTGGTCA+TGG - chr5_2:6726454-6726473 Msa0753040:CDS 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + chr5_2:6727729-6727748 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + chr5_2:6727732-6727751 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - chr5_2:6727729-6727748 Msa0753040:intron 60.0%
AATTGACGCGGCGCGGTATG+CGG - chr5_2:6727736-6727755 Msa0753040:intron 60.0%
GCGGGGGCTATTACATGACG+CGG - chr5_2:6727766-6727785 Msa0753040:intron 60.0%
AAGCGGCCGCTATTCCTGGT+CGG + chr5_2:6728773-6728792 None:intergenic 60.0%
GTCAAAGCGGCCGCTATTCC+TGG + chr5_2:6728777-6728796 None:intergenic 60.0%
!! GGGTCGATAGCGGGTCAAAG+CGG + chr5_2:6728790-6728809 None:intergenic 60.0%
! GCTTTTACGTGGAGCGGAGC+GGG + chr5_2:6728810-6728829 None:intergenic 60.0%
! CGCTTTTACGTGGAGCGGAG+CGG + chr5_2:6728811-6728830 None:intergenic 60.0%
CGCTCCGCTCCACGTAAAAG+CGG - chr5_2:6728809-6728828 Msa0753040:CDS 60.0%
!!! GTTTCGCGGCCGCTTTTACG+TGG + chr5_2:6728821-6728840 None:intergenic 60.0%
TTCACAAACGCGCTACGCGG+TGG - chr5_2:6728847-6728866 Msa0753040:intron 60.0%
AGAGGAGGAGGAGGAGGAGG+AGG + chr5_2:6723238-6723257 None:intergenic 65.0%
CGAAGAGGAGGAGGAGGAGG+AGG + chr5_2:6723241-6723260 None:intergenic 65.0%
CAGCGAAGAGGAGGAGGAGG+AGG + chr5_2:6723244-6723263 None:intergenic 65.0%
!! GTCACCGGTTCGAACCCGGT+TGG + chr5_2:6724987-6725006 None:intergenic 65.0%
CTTCGGGGTCTCTACCCTGC+TGG - chr5_2:6725767-6725786 Msa0753040:CDS 65.0%
GTCAAAGCGGAAACGCGGCG+CGG - chr5_2:6727698-6727717 Msa0753040:intron 65.0%
ATTGACGCGGCGCGGTATGC+GGG - chr5_2:6727737-6727756 Msa0753040:intron 65.0%
!!! GCGGCCGCTTTTACGTGGAG+CGG + chr5_2:6728816-6728835 None:intergenic 65.0%
TACGCGGTGGCGTTCTGACG+CGG - chr5_2:6728860-6728879 Msa0753040:intron 65.0%
TTGTCAAACGCGGCCGCTCC+CGG + chr5_2:6728921-6728940 None:intergenic 65.0%
GGGCCCAACCGGGTTCGAAC+CGG - chr5_2:6724980-6724999 Msa0753040:intron 70.0%
GAGCGGAGCGGGTCGATAGC+GGG + chr5_2:6728799-6728818 None:intergenic 70.0%
GGAGCGGAGCGGGTCGATAG+CGG + chr5_2:6728800-6728819 None:intergenic 70.0%
! AGCGGAAACGCGGCGCGGCG+CGG - chr5_2:6727703-6727722 Msa0753040:intron 80.0%
! CGCGGTATGCGGGCGCGACG+CGG - chr5_2:6727747-6727766 Msa0753040:intron 80.0%
! GCGGTATGCGGGCGCGACGC+GGG - chr5_2:6727748-6727767 Msa0753040:intron 80.0%
! CGGTATGCGGGCGCGACGCG+GGG - chr5_2:6727749-6727768 Msa0753040:intron 80.0%
! GGTATGCGGGCGCGACGCGG+GGG - chr5_2:6727750-6727769 Msa0753040:intron 80.0%
! GGCGCTATCGCGGCGCGGAG+CGG + chr5_2:6728900-6728919 None:intergenic 80.0%
! GCTCCGCGCCGCGATAGCGC+CGG - chr5_2:6728899-6728918 Msa0753040:intron 80.0%
! CTCCGCGCCGCGATAGCGCC+GGG - chr5_2:6728900-6728919 Msa0753040:intron 80.0%
! CTCCCGGCGCTATCGCGGCG+CGG + chr5_2:6728905-6728924 None:intergenic 80.0%
!! CGCCGCGATAGCGCCGGGAG+CGG - chr5_2:6728905-6728924 Msa0753040:intron 80.0%
! GGCCGCTCCCGGCGCTATCG+CGG + chr5_2:6728910-6728929 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6722980 6729256 6722980 ID=Msa0753040;Name=Msa0753040
chr5_2 mRNA 6722980 6729256 6722980 ID=Msa0753040-mRNA-1;Parent=Msa0753040;Name=Msa0753040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=150|0.90|0.91|1|0.72|0.75|12|103|347
chr5_2 exon 6722980 6723030 6722980 ID=Msa0753040-mRNA-1:exon:2930;Parent=Msa0753040-mRNA-1
chr5_2 exon 6723058 6723181 6723058 ID=Msa0753040-mRNA-1:exon:2929;Parent=Msa0753040-mRNA-1
chr5_2 exon 6725249 6725296 6725249 ID=Msa0753040-mRNA-1:exon:2928;Parent=Msa0753040-mRNA-1
chr5_2 exon 6725747 6725817 6725747 ID=Msa0753040-mRNA-1:exon:2927;Parent=Msa0753040-mRNA-1
chr5_2 exon 6726143 6726272 6726143 ID=Msa0753040-mRNA-1:exon:2926;Parent=Msa0753040-mRNA-1
chr5_2 exon 6726400 6726474 6726400 ID=Msa0753040-mRNA-1:exon:2925;Parent=Msa0753040-mRNA-1
chr5_2 exon 6726697 6726748 6726697 ID=Msa0753040-mRNA-1:exon:2924;Parent=Msa0753040-mRNA-1
chr5_2 exon 6727322 6727390 6727322 ID=Msa0753040-mRNA-1:exon:2923;Parent=Msa0753040-mRNA-1
chr5_2 exon 6727793 6727854 6727793 ID=Msa0753040-mRNA-1:exon:2922;Parent=Msa0753040-mRNA-1
chr5_2 exon 6728072 6728125 6728072 ID=Msa0753040-mRNA-1:exon:2921;Parent=Msa0753040-mRNA-1
chr5_2 exon 6728617 6728838 6728617 ID=Msa0753040-mRNA-1:exon:2920;Parent=Msa0753040-mRNA-1
chr5_2 exon 6728918 6729256 6728918 ID=Msa0753040-mRNA-1:exon:2919;Parent=Msa0753040-mRNA-1
chr5_2 five_prime_UTR 6729107 6729256 6729107 ID=Msa0753040-mRNA-1:five_prime_utr;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6728918 6729106 6728918 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6728617 6728838 6728617 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6728072 6728125 6728072 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6727793 6727854 6727793 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6727322 6727390 6727322 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6726697 6726748 6726697 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6726400 6726474 6726400 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6726143 6726272 6726143 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6725747 6725817 6725747 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6725249 6725296 6725249 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 CDS 6723110 6723181 6723110 ID=Msa0753040-mRNA-1:cds;Parent=Msa0753040-mRNA-1
chr5_2 three_prime_UTR 6723058 6723109 6723058 ID=Msa0753040-mRNA-1:three_prime_utr;Parent=Msa0753040-mRNA-1
chr5_2 three_prime_UTR 6722980 6723030 6722980 ID=Msa0753040-mRNA-1:three_prime_utr;Parent=Msa0753040-mRNA-1
Gene Sequence

>Msa0753040

ATGCAATCACACTTACGCTCACATTCACTCTCTTCGTTTCCAAAATCATTTAAGAGCCAGCACTTTTCATCTTTCACCACCTCACTAATATCCTCTTCTATTTTTCCTCCTCCTCCTCCTCCTCCTCTTCGCTGCAATCTCAAATTACCACCACGCTTTCAATTCACCAACATTTTTCAGGCTACAACGGGATTCGCTCATGCTTCCGATCATGATTCTGTTGCCGAAAACACCGATAGTGAATGTCAATTGGCAACACAGAATGTGTCTTCTGATGACACTGATGATGGATCAATGACACTTGTGAAGTTTATGCTGTTCTCCGCGTTCTTCGCTCTTCAAGATACTTATCCGGCAGTTGCTGCTTCTGATTTTGCTACTGGTTTGAATTCAATTCCTATATTTGGAGATGCATTTTTGCTGATATTTTTCTCTGAACTGGGAGACAAGACTTTTTTCATTGCAGCATTGTTAGCAGCTAGAAATTCAGCTGGTGTTGTTTTCGTTGGGACATTTGGCGCACTTGCGGCAATGACTGTCATATCTGTCGCTCTAGGTCGAACTTTTCATTATGTTGACGAACTCTTGCCGTTCAGGTTTGGAGAAACTGATCTACCTATTGATGATATTGCTGCTGTTTGCCTATTGGTGTACTTCGGGGTCTCTACCCTGCTGGATGCCTCATCTAGTGATAGCCAAAAATCAGATGATGAACAGAAGGAGGCAGAGTTAGCAGTTTCTGATTTTTCTGGAGACGGTGCTGGGATACTAGCTGCTGCCAGCACAATTGTCAGCACTTTTCTCTTAGTTTTTGTTGCTGAGTGGGGTGATAAATCATTTTTCTCCACAATTGCCCTTGCAGCAGCTTCTTCACCCTTGGGAGTCATAGCTGGATCACTGGCTGGTCATGGTGTTGCAACTTTGATAGCCGTACTTGGTGGCTCTTTACTAGGGACATTTTTGTCGGAGAAGGTTATAGCCTACATTGGAGGTGTGCTCTTTCTCGTCTTTGCTGCAGTAACCGTATTTGAAATTGTACAATAG

Protein sequence

>Msa0753040

MQSHLRSHSLSSFPKSFKSQHFSSFTTSLISSSIFPPPPPPPLRCNLKLPPRFQFTNIFQATTGFAHASDHDSVAENTDSECQLATQNVSSDDTDDGSMTLVKFMLFSAFFALQDTYPAVAASDFATGLNSIPIFGDAFLLIFFSELGDKTFFIAALLAARNSAGVVFVGTFGALAAMTVISVALGRTFHYVDELLPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDSQKSDDEQKEAELAVSDFSGDGAGILAAASTIVSTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGSLAGHGVATLIAVLGGSLLGTFLSEKVIAYIGGVLFLVFAAVTVFEIVQ*