AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646310 MtrunA17_Chr4g0034391 92.672 655 24 4 1 645 1 641 0.0 1135
Msa0646310 MtrunA17_Chr4g0064601 34.824 313 162 11 22 322 7 289 6.33e-34 131
Msa0646310 MtrunA17_Chr4g0032081 26.812 276 171 9 62 323 87 345 1.24e-17 86.7
Msa0646310 MtrunA17_Chr8g0338051 34.911 169 83 8 97 258 93 241 2.07e-15 77.8
Msa0646310 MtrunA17_Chr4g0009941 47.297 74 38 1 179 252 107 179 8.51e-14 72.0
Msa0646310 MtrunA17_Chr7g0238901 37.500 96 56 2 179 274 181 272 1.66e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646310 AT3G18890.1 50.515 679 235 22 9 641 13 636 0.0 540
Msa0646310 AT2G34460.1 36.264 273 140 10 63 325 32 280 2.05e-32 127
Msa0646310 AT3G46780.1 29.520 271 151 10 75 323 89 341 5.90e-14 75.5
Msa0646310 AT4G31530.1 30.088 226 121 11 97 304 93 299 1.97e-13 72.4
Msa0646310 AT4G31530.2 30.088 226 121 11 97 304 93 299 2.13e-13 72.4
Msa0646310 AT2G37660.1 40.860 93 50 3 172 261 168 258 6.96e-13 70.5
Msa0646310 AT5G02240.1 41.975 81 32 2 179 252 105 177 4.93e-12 67.0

Find 221 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCATTGGTATGGCTTAA+AGG 0.193367 4_3:-52045763 None:intergenic
TGAAGAGTTCATGTGATTAA+TGG 0.197105 4_3:+52050709 Msa0646310:three_prime_UTR
GCTTGATACTGCATCAATAT+TGG 0.200433 4_3:-52049891 None:intergenic
GTTCATGAAATGTGAGTATT+TGG 0.202709 4_3:-52045873 None:intergenic
TCACTGGGAACAAACAAATT+TGG 0.210597 4_3:+52047185 Msa0646310:CDS
ATCATAAGAGCTCAAGTTTC+AGG 0.231625 4_3:+52045941 Msa0646310:CDS
GGCACTTCTGCCACTGGTTC+TGG 0.235947 4_3:-52048007 None:intergenic
AATGCTGATTTAATCTGTTC+TGG 0.248713 4_3:-52046915 None:intergenic
TGAGAAATGACATCTATTTC+TGG 0.252631 4_3:-52048307 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_3:-52049765 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_3:-52049849 None:intergenic
ACAAAGTATCTTCAGTTGAT+AGG 0.258571 4_3:-52047531 None:intergenic
TGAAAGTACTATAACATAAA+TGG 0.264411 4_3:-52050606 None:intergenic
TCACATGAACTCTTCAAAAT+AGG 0.279781 4_3:-52050702 None:intergenic
GAACAGATTAAATCAGCATT+AGG 0.306427 4_3:+52046918 Msa0646310:CDS
TCAACTGAAGATACTTTGTT+TGG 0.310359 4_3:+52047535 Msa0646310:CDS
CTTGATACTGCATCAATATT+GGG 0.311245 4_3:-52049890 None:intergenic
ATTGATGTAGTTGGTGCATT+AGG 0.312719 4_3:-52048614 None:intergenic
AAAAGTCATCAAGAAATAAA+TGG 0.316117 4_3:-52050516 None:intergenic
AAATAGGTTGGAGAAATCTT+TGG 0.320961 4_3:-52050781 None:intergenic
TGAAATTGTGGAATGTGATT+TGG 0.325323 4_3:+52046887 Msa0646310:CDS
CAAAGTAAATCACTTCATAT+TGG 0.327885 4_3:+52047157 Msa0646310:CDS
CAACTGAAGATACTTTGTTT+GGG 0.335926 4_3:+52047536 Msa0646310:CDS
GAAGATGTCTTTGGTGCATT+AGG 0.343205 4_3:-52049728 None:intergenic
GTATTTGTTGCTGGTGCTAC+TGG 0.357027 4_3:+52046105 Msa0646310:CDS
ACTTGATACTTCCTCAATCT+TGG 0.357838 4_3:-52048663 None:intergenic
GTTAAACAATTGAAGCTTGA+TGG 0.358751 4_3:+52046755 Msa0646310:CDS
GCTGCAGCTGTTAAACCTTC+TGG 0.360943 4_3:+52045836 Msa0646310:CDS
GTGGTCTTGACTTTGGTTCA+TGG 0.366970 4_3:-52049970 None:intergenic
CTTTCACCACAACACCTTCC+AGG 0.367198 4_3:+52045900 Msa0646310:CDS
CACCTCACTCACAGAAGATA+TGG 0.369750 4_3:-52049825 None:intergenic
TTACTGACAGCTGCAGTATC+TGG 0.378629 4_3:-52047932 None:intergenic
AATCTGGCTTACGCAGTATA+AGG 0.381547 4_3:-52048091 None:intergenic
GAGAGCTGGTGCATTGGTTC+AGG 0.386003 4_3:+52046298 Msa0646310:CDS
CTTCATATTGGTTACTTCAC+TGG 0.386091 4_3:+52047169 Msa0646310:CDS
GTTGATACTGCATCAATATT+GGG 0.387116 4_3:-52049764 None:intergenic
GTTGATACTGCATCAATATT+GGG 0.387116 4_3:-52049848 None:intergenic
AGATCCTGTTCATCCTCCTT+TGG 0.396399 4_3:-52049947 None:intergenic
GTTGTTCTGTTTCTTTCTGA+GGG 0.398813 4_3:-52047985 None:intergenic
CCTTTGCTATGTGTGGATAT+TGG 0.399710 4_3:-52045606 None:intergenic
TCTATTTCTGGAATGTTACT+TGG 0.402869 4_3:-52048295 None:intergenic
CAATATGAAGTGATTTACTT+TGG 0.403428 4_3:-52047156 None:intergenic
TCTTCCACTGAAAGTTGAGC+TGG 0.403497 4_3:-52048692 None:intergenic
ATGGATACTGCATCAGTATT+GGG 0.405249 4_3:-52049806 None:intergenic
TTGGAATCTTTCTTCTCAGC+AGG 0.406079 4_3:-52046069 None:intergenic
GGATGGAAGTATGAACTCTT+TGG 0.410458 4_3:-52045742 None:intergenic
TTCTTGTCACTAGGCTTGAC+TGG 0.411639 4_3:-52048223 None:intergenic
CAGACAACAACTTCCTCAAA+AGG 0.412884 4_3:+52048328 Msa0646310:CDS
TTCAGGGAGCTTATAAAGCT+TGG 0.416341 4_3:+52046242 Msa0646310:intron
TGTATCTTCCACTGAGAGTT+GGG 0.420266 4_3:-52049924 None:intergenic
AACAGATTAAATCAGCATTA+GGG 0.420765 4_3:+52046919 Msa0646310:CDS
TAGGAACTGCCTCCTTCATA+TGG 0.421595 4_3:+52050282 Msa0646310:exon
TACACCAAAGGAGGATGAAC+AGG 0.421763 4_3:+52049943 Msa0646310:CDS
ACCTTGGGCGAAGGAATGTA+AGG 0.425014 4_3:-52047799 None:intergenic
AAATCAACTTACATTGCATA+AGG 0.428183 4_3:-52048770 None:intergenic
TCACAATGACTTACTGTGTA+TGG 0.429213 4_3:-52047371 None:intergenic
GGGACAAGTGTCAAACCTTC+AGG 0.430341 4_3:+52047558 Msa0646310:CDS
GGTTGTTCTGTTTCTTTCTG+AGG 0.430676 4_3:-52047986 None:intergenic
GATAATTTAGTATTTGTTGC+TGG 0.433238 4_3:+52046096 Msa0646310:CDS
AAATACTAAATTATCATCCT+TGG 0.436092 4_3:-52046088 None:intergenic
GAACCCACTGAAGATGTCTT+TGG 0.437130 4_3:-52049737 None:intergenic
GTGTATCTTCCACTGAGAGT+TGG 0.442393 4_3:-52049925 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.446897 4_3:-52049977 None:intergenic
TTAAAGTCAGGGCTGGAGTA+AGG 0.451884 4_3:+52046267 Msa0646310:CDS
CCATTAGAATCTTCTATCAA+TGG 0.452110 4_3:-52045641 None:intergenic
CAAAGTATCTTCAGTTGATA+GGG 0.452346 4_3:-52047530 None:intergenic
GGGGAGTCTTGTGTTGGAAA+AGG 0.452651 4_3:+52047315 Msa0646310:CDS
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_3:-52048584 None:intergenic
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_3:-52049698 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.459043 4_3:-52048749 None:intergenic
GAATCAACTTACATTGCAAA+AGG 0.459172 4_3:-52049998 None:intergenic
TATGGATACTGCATCAGTAT+TGG 0.460775 4_3:-52049807 None:intergenic
ATTGCTACGGATTCTACTCC+TGG 0.465646 4_3:-52045918 None:intergenic
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_3:+52049781 Msa0646310:CDS
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_3:+52049865 Msa0646310:CDS
TTCCTTCTCACTGGCACCAA+TGG 0.467693 4_3:-52046964 None:intergenic
ACTTTCATATTGTAAAATAG+TGG 0.469678 4_3:+52047705 Msa0646310:CDS
AAAGACATCTTCAGTGGGTT+CGG 0.469997 4_3:+52049739 Msa0646310:CDS
GGCAGCCATGGCTAAGAATC+CGG 0.477270 4_3:+52047681 Msa0646310:CDS
TGCTCAGAGAGCTGGTGCAT+TGG 0.480019 4_3:+52046292 Msa0646310:CDS
GTGACATTAGCCGAGGGAGC+TGG 0.483141 4_3:-52047956 None:intergenic
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_3:+52049780 Msa0646310:CDS
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_3:+52049864 Msa0646310:CDS
TCTTCCACTGAGAGTTGGGC+TGG 0.488054 4_3:-52049920 None:intergenic
GTAGGCCTCTCCATGCCTCC+AGG 0.491171 4_3:-52047478 None:intergenic
TTCATATTGGTTACTTCACT+GGG 0.496841 4_3:+52047170 Msa0646310:CDS
AGAGGAGGGAATGGTAGTTG+AGG 0.502856 4_3:-52045798 None:intergenic
GGTTGTTCTGTTTCTTTCTG+AGG 0.503577 4_3:-52048040 None:intergenic
TCACTAGGCTTGACTGGAGA+AGG 0.505013 4_3:-52048217 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_3:-52048599 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_3:-52049713 None:intergenic
TCTTGTTACCAGCATCAACT+AGG 0.506630 4_3:-52047037 None:intergenic
GAGGCCTACTGATGCTTACA+AGG 0.507682 4_3:+52047492 Msa0646310:CDS
AAAGCGGCTTACGCTGCAAA+AGG 0.509111 4_3:-52048367 None:intergenic
GTAAGGAGTGCTCAGAGAGC+TGG 0.510095 4_3:+52046284 Msa0646310:CDS
GTGGTCTTGACTTTGGCTCA+TGG 0.511247 4_3:-52048742 None:intergenic
ATCAATATCCACATCTTCTG+TGG 0.513109 4_3:+52048631 Msa0646310:CDS
TCTACTCCTGGAAGGTGTTG+TGG 0.513273 4_3:-52045906 None:intergenic
GATAGTGAGGCCTGGAGGCA+TGG 0.513704 4_3:+52047468 Msa0646310:intron
TACATTGCAAAAGGTGAAAG+TGG 0.514619 4_3:-52049989 None:intergenic
GAAGACACCCCACAGGATGA+TGG 0.516796 4_3:+52048710 Msa0646310:CDS
TCTTTCTGAGGAGTAATGCT+AGG 0.517921 4_3:-52048028 None:intergenic
CTTGGAGCATCTGAAGAACT+AGG 0.518040 4_3:-52048277 None:intergenic
TGTCAATGGCGCAGTTGTCT+CGG 0.519089 4_3:-52047737 None:intergenic
TACATTGCATAAGGTGAAAG+TGG 0.521440 4_3:-52048761 None:intergenic
ATCCACATCTTCTGTGGGTG+AGG 0.521943 4_3:+52048637 Msa0646310:CDS
GCCATGTAATCTATTCGATA+AGG 0.522613 4_3:-52047005 None:intergenic
CTGGAAGGTGTTGTGGTGAA+AGG 0.523075 4_3:-52045899 None:intergenic
GATGGAAGCAACTATGTGAA+TGG 0.524074 4_3:+52050478 Msa0646310:three_prime_UTR
CACATCTTCTGTGGGTGAGG+TGG 0.525593 4_3:+52048640 Msa0646310:CDS
CCCTTACATTCCTTCGCCCA+AGG 0.525837 4_3:+52047798 Msa0646310:CDS
ATGCTAGGCACTTCTGCCAC+TGG 0.528403 4_3:-52048013 None:intergenic
TGTCAGTAATCCAGCTCCCT+CGG 0.533028 4_3:+52047946 Msa0646310:CDS
GGTACAAGTGGAGGGAGTGA+AGG 0.534697 4_3:+52046776 Msa0646310:CDS
AATTCAGGTTGCTGAACTCA+TGG 0.535898 4_3:+52047660 Msa0646310:intron
GCTGGTGCTACTGGAAAAGT+TGG 0.537357 4_3:+52046114 Msa0646310:CDS
CACTAGGCTTGACTGGAGAA+GGG 0.537665 4_3:-52048216 None:intergenic
TTTATCTGTTTCTTGTCACT+AGG 0.538287 4_3:-52048232 None:intergenic
CCTTGTCTGATTCCATATGA+AGG 0.538315 4_3:-52050294 None:intergenic
AAGGAAGGTGATGGTGATGC+AGG 0.540221 4_3:-52050249 None:intergenic
CCATTGATAGAAGATTCTAA+TGG 0.541034 4_3:+52045641 Msa0646310:five_prime_UTR
ACCTTCCTTCAGAAAATCCT+AGG 0.542140 4_3:+52050263 Msa0646310:CDS
CATTGGTATGGCTTAAAGGA+TGG 0.542618 4_3:-52045759 None:intergenic
AGACAACAACTTCCTCAAAA+GGG 0.544213 4_3:+52048329 Msa0646310:CDS
TGTAGAGAAGCTTGAAATTG+TGG 0.545007 4_3:+52046875 Msa0646310:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_3:+52049779 Msa0646310:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_3:+52049863 Msa0646310:CDS
ATATGAAGGAGGCAGTTCCT+AGG 0.545779 4_3:-52050280 None:intergenic
GTAATCTATTCGATAAGGTC+CGG 0.552580 4_3:-52047000 None:intergenic
CACCATTGGTGCCAGTGAGA+AGG 0.552835 4_3:+52046962 Msa0646310:CDS
GAGCTCTTATGATATTGCTA+CGG 0.556118 4_3:-52045931 None:intergenic
TGAGAAAGCCTCCATTGGTA+TGG 0.556330 4_3:-52045771 None:intergenic
AGCTCCCTCGGCTAATGTCA+CGG 0.560709 4_3:+52047958 Msa0646310:CDS
GATTCTGTCCATCATCCTGT+GGG 0.562158 4_3:-52048718 None:intergenic
AACTGAAGATACTTTGTTTG+GGG 0.562205 4_3:+52047537 Msa0646310:CDS
GGAATGTAAGGGCGTTGAGA+AGG 0.562301 4_3:-52047787 None:intergenic
TCATCAAGAAATAAATGGCA+TGG 0.563194 4_3:-52050511 None:intergenic
CTCTCTACGTGTTAGAGAGG+AGG 0.563295 4_3:-52045813 None:intergenic
GATGTGGATATTGATGTAGT+TGG 0.564321 4_3:-52048623 None:intergenic
TGCTGAACTCATGGCAGCCA+TGG 0.565756 4_3:+52047669 Msa0646310:CDS
CTTCCACTGAAAGTTGAGCT+GGG 0.565860 4_3:-52048691 None:intergenic
AAGCTTGATGGTACAAGTGG+AGG 0.568328 4_3:+52046767 Msa0646310:CDS
TGGAAGGTGTTGTGGTGAAA+GGG 0.568808 4_3:-52045898 None:intergenic
GTGAGTGAGAAAGCCTCCAT+TGG 0.570312 4_3:-52045776 None:intergenic
TGGAAGTATGAACTCTTTGG+TGG 0.570655 4_3:-52045739 None:intergenic
TTGTTACTCAAATATGAAGA+TGG 0.571068 4_3:+52050460 Msa0646310:three_prime_UTR
AGATTCTGTCCATCATCCTG+TGG 0.575424 4_3:-52048719 None:intergenic
CCTTTAAGCCATACCAATGG+AGG 0.575552 4_3:+52045763 Msa0646310:exon
ACCTTATCGAATAGATTACA+TGG 0.577220 4_3:+52047004 Msa0646310:CDS
ATTGAGGAAGTATCAAGTAA+TGG 0.580305 4_3:+52048668 Msa0646310:CDS
GAATCTTCTATCAATGGCAG+TGG 0.580736 4_3:-52045635 None:intergenic
GAGGAAGCATTGCTAGCAAG+TGG 0.583190 4_3:+52047344 Msa0646310:CDS
GCATCTGAAGAACTAGGTGT+TGG 0.583270 4_3:-52048271 None:intergenic
TCAATATCCACATCTTCTGT+GGG 0.583412 4_3:+52048632 Msa0646310:CDS
TCTCTACGTGTTAGAGAGGA+GGG 0.583672 4_3:-52045812 None:intergenic
ACGTGTTAGAGAGGAGGGAA+TGG 0.583834 4_3:-52045807 None:intergenic
TTGACTGGAGAAGGGGATGA+CGG 0.585281 4_3:-52048208 None:intergenic
TTGAAGCTTGATGGTACAAG+TGG 0.587112 4_3:+52046764 Msa0646310:CDS
CATGAACTCTTCAAAATAGG+TGG 0.587360 4_3:-52050699 None:intergenic
ACTCACTTGAGAATAGCTGC+AGG 0.587473 4_3:-52047212 None:intergenic
TGCTGAGAAGAAAGATTCCA+AGG 0.587792 4_3:+52046071 Msa0646310:CDS
AGGTTGGAGAAATCTTTGGT+TGG 0.590449 4_3:-52050777 None:intergenic
TTCATATTGTAAAATAGTGG+AGG 0.590861 4_3:+52047708 Msa0646310:CDS
ATCCATATCTTCTGTGAGTG+AGG 0.591930 4_3:+52049823 Msa0646310:CDS
TGAGTAACAATCCTCCATGT+GGG 0.595668 4_3:-52050447 None:intergenic
GAAAGGTTGACATGGCCAGA+AGG 0.599944 4_3:-52045851 None:intergenic
AGCTTGATGGTACAAGTGGA+GGG 0.600932 4_3:+52046768 Msa0646310:CDS
TGGCCCAGCTCAACTTTCAG+TGG 0.601032 4_3:+52048688 Msa0646310:CDS
CATCCTTTAAGCCATACCAA+TGG 0.601615 4_3:+52045760 Msa0646310:exon
CACCTCACCCACAGAAGATG+TGG 0.603210 4_3:-52048639 None:intergenic
TCAACTGTAATATGCACCAT+TGG 0.604959 4_3:+52046948 Msa0646310:CDS
GGGTGAGGTGGCCAAGATTG+AGG 0.606108 4_3:+52048652 Msa0646310:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_3:+52049775 Msa0646310:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_3:+52049859 Msa0646310:CDS
AGTCTTGTGTTGGAAAAGGA+AGG 0.608353 4_3:+52047319 Msa0646310:CDS
AACAGAACAACCAGAACCAG+TGG 0.608935 4_3:+52047997 Msa0646310:CDS
CCTTCATATGGAATCAGACA+AGG 0.608962 4_3:+52050294 Msa0646310:three_prime_UTR
GTGCAATCCTTTGCTATGTG+TGG 0.609108 4_3:-52045613 None:intergenic
AACAACTTCCTCAAAAGGGA+AGG 0.609863 4_3:+52048333 Msa0646310:CDS
TTGTTCTGTTTCTTTCTGAG+GGG 0.610469 4_3:-52047984 None:intergenic
ACTAGGCTTGACTGGAGAAG+GGG 0.613659 4_3:-52048215 None:intergenic
GGCTTCCGTGACATTAGCCG+AGG 0.614213 4_3:-52047963 None:intergenic
GTTTCCTTGTAAGCATCAGT+AGG 0.615909 4_3:-52047496 None:intergenic
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_3:+52049776 Msa0646310:CDS
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_3:+52049860 Msa0646310:CDS
TTGAGTAACAATCCTCCATG+TGG 0.620376 4_3:-52050448 None:intergenic
ATTGATGCAGTATCAAGCAA+TGG 0.622304 4_3:+52049896 Msa0646310:CDS
CTACGGATTCTACTCCTGGA+AGG 0.622955 4_3:-52045914 None:intergenic
AAGTTGGTTCAAGAACAGTC+AGG 0.626940 4_3:+52046130 Msa0646310:CDS
GTCTTTGGTGCATTAGGAGA+TGG 0.628697 4_3:-52049722 None:intergenic
TTCAGTGGAAGACACCCCAC+AGG 0.630088 4_3:+52048703 Msa0646310:CDS
ACTGAAGATACTTTGTTTGG+GGG 0.630131 4_3:+52047538 Msa0646310:CDS
GAAGTACTTACCTTGGGCGA+AGG 0.631651 4_3:-52047808 None:intergenic
AGTTTATGTAGCAACCCACA+TGG 0.631927 4_3:+52050433 Msa0646310:three_prime_UTR
GGAAGTATGAACTCTTTGGT+GGG 0.632285 4_3:-52045738 None:intergenic
AAGTTCCGGATTCTTAGCCA+TGG 0.634573 4_3:-52047686 None:intergenic
CTCCTCTCTAACACGTAGAG+AGG 0.634813 4_3:+52045814 Msa0646310:CDS
TGAAATGTGAGTATTTGGAA+AGG 0.635220 4_3:-52045868 None:intergenic
CCTTGGGCGAAGGAATGTAA+GGG 0.638040 4_3:-52047798 None:intergenic
CCAATATCCACACATAGCAA+AGG 0.640794 4_3:+52045606 Msa0646310:five_prime_UTR
GAAGGTGATGGTGATGCAGG+AGG 0.640994 4_3:-52050246 None:intergenic
TGCACCAAAGACATCTTCAG+TGG 0.642448 4_3:+52049733 Msa0646310:CDS
TGGACCAGCCCAACTCTCAG+TGG 0.643488 4_3:+52049916 Msa0646310:CDS
TGAGGCCTGGAGGCATGGAG+AGG 0.646592 4_3:+52047473 Msa0646310:CDS
AGTGGAAGATACACCAAAGG+AGG 0.647962 4_3:+52049934 Msa0646310:CDS
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_3:-52048596 None:intergenic
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_3:-52049710 None:intergenic
GCTTCCGTGACATTAGCCGA+GGG 0.653553 4_3:-52047962 None:intergenic
AACAGAACAACCGAAACCAG+TGG 0.657563 4_3:+52048051 Msa0646310:CDS
ACTGGAGAAGGGGATGACGG+TGG 0.659696 4_3:-52048205 None:intergenic
AGCCTCTCTACGTGTTAGAG+AGG 0.660056 4_3:-52045816 None:intergenic
TACGCAGTATAAGGAGAAAG+CGG 0.663306 4_3:-52048082 None:intergenic
CTCAGTGGAAGATACACCAA+AGG 0.671918 4_3:+52049931 Msa0646310:CDS
TTTCAGATAGTGAGGCCTGG+AGG 0.672933 4_3:+52047463 Msa0646310:intron
GTAGTTGGTGCATTAGGAGA+TGG 0.677079 4_3:-52048608 None:intergenic
GCACCAAAGACATCTTCAGT+GGG 0.678977 4_3:+52049734 Msa0646310:CDS
GTGTTGGAAAAGGAAGGCAG+AGG 0.684666 4_3:+52047325 Msa0646310:CDS
TGTCTGATTCCATATGAAGG+AGG 0.693470 4_3:-52050291 None:intergenic
AGTATTTGGAAAGGTTGACA+TGG 0.695746 4_3:-52045859 None:intergenic
ATTCTGTCCATCATCCTGTG+GGG 0.704456 4_3:-52048717 None:intergenic
TTATGTAGCAACCCACATGG+AGG 0.728794 4_3:+52050436 Msa0646310:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATAACAAATAAAATA+AGG - chr4_3:52046568-52046587 None:intergenic 10.0%
!! AACATAAAAATAAGATAATT+AGG - chr4_3:52047427-52047446 None:intergenic 10.0%
!!! ATTTAAGATATATAGATATA+TGG + chr4_3:52047620-52047639 Msa0646310:intron 10.0%
!! TTATAATCAGTTTCTTAAAA+TGG + chr4_3:52046687-52046706 Msa0646310:intron 15.0%
!!! TCTATTTTTGTAGTTTATTT+TGG + chr4_3:52047294-52047313 Msa0646310:intron 15.0%
!!! CTATTTTTGTAGTTTATTTT+GGG + chr4_3:52047295-52047314 Msa0646310:intron 15.0%
!!! TATTTTTGTAGTTTATTTTG+GGG + chr4_3:52047296-52047315 Msa0646310:intron 15.0%
!!! CATAATTGTGATATATTTTT+TGG + chr4_3:52050385-52050404 Msa0646310:intron 15.0%
!! AAATACTAAATTATCATCCT+TGG - chr4_3:52046091-52046110 None:intergenic 20.0%
!! AAGAAAATTACTATCTCAAA+AGG - chr4_3:52046194-52046213 None:intergenic 20.0%
!! AGTTTCTTAAAATGGATAAT+TGG + chr4_3:52046695-52046714 Msa0646310:intron 20.0%
!!! ATTTTACAATATGAAAGTTC+CGG - chr4_3:52047703-52047722 None:intergenic 20.0%
!! ACTTTCATATTGTAAAATAG+TGG + chr4_3:52047705-52047724 Msa0646310:CDS 20.0%
!! GTCACAAAATGTATTATATA+CGG - chr4_3:52047833-52047852 None:intergenic 20.0%
!! TATATACCAACTTAGTTATT+TGG - chr4_3:52048160-52048179 None:intergenic 20.0%
!! AAGAACTAAGAAAAAGTTAA+AGG - chr4_3:52048802-52048821 None:intergenic 20.0%
!!! ACAAACATTTTACAATTTCA+GGG - chr4_3:52049159-52049178 None:intergenic 20.0%
!!! CTAATTTGCATATGAAATTT+AGG - chr4_3:52049366-52049385 None:intergenic 20.0%
!!! AACAACATTTTACAATTTCA+TGG + chr4_3:52049494-52049513 Msa0646310:intron 20.0%
!! GAAGAAATAAGAAAATTTGA+TGG - chr4_3:52050031-52050050 None:intergenic 20.0%
!! AAAAGTCATCAAGAAATAAA+TGG - chr4_3:52050519-52050538 None:intergenic 20.0%
!!! TGAAAGTACTATAACATAAA+TGG - chr4_3:52050609-52050628 None:intergenic 20.0%
!! GATAATTTAGTATTTGTTGC+TGG + chr4_3:52046096-52046115 Msa0646310:CDS 25.0%
! GATTTAACTAATGGCATATT+TGG + chr4_3:52046347-52046366 Msa0646310:intron 25.0%
! AATAAGATGAAAACAGCTTA+TGG - chr4_3:52046455-52046474 None:intergenic 25.0%
! AACAGATTAAATCAGCATTA+GGG + chr4_3:52046919-52046938 Msa0646310:CDS 25.0%
!! AAGGAAATTTTTGACATTAC+CGG + chr4_3:52046981-52047000 Msa0646310:CDS 25.0%
! CAATATGAAGTGATTTACTT+TGG - chr4_3:52047159-52047178 None:intergenic 25.0%
! CAAAGTAAATCACTTCATAT+TGG + chr4_3:52047157-52047176 Msa0646310:CDS 25.0%
! TTCATATTGTAAAATAGTGG+AGG + chr4_3:52047708-52047727 Msa0646310:CDS 25.0%
! CAAATTAAAGAGGTTTAGAT+GGG - chr4_3:52048445-52048464 None:intergenic 25.0%
!! TGCTAAAGTATTTCATAACA+AGG - chr4_3:52048498-52048517 None:intergenic 25.0%
! AAATCAACTTACATTGCATA+AGG - chr4_3:52048773-52048792 None:intergenic 25.0%
! CTTTCTTCTATAATAAGGAA+TGG - chr4_3:52048838-52048857 None:intergenic 25.0%
! CTTATTATAGAAGAAAGAGA+GGG + chr4_3:52048841-52048860 Msa0646310:intron 25.0%
! TTATTATAGAAGAAAGAGAG+GGG + chr4_3:52048842-52048861 Msa0646310:intron 25.0%
!! GACAAACATTTTACAATTTC+AGG - chr4_3:52049160-52049179 None:intergenic 25.0%
!! CTAATTTGCCTATGAAATTT+AGG + chr4_3:52049288-52049307 Msa0646310:intron 25.0%
! TAAAAAAATTGTCCTTGAGA+TGG + chr4_3:52049340-52049359 Msa0646310:intron 25.0%
! TTACGAAAGAAGTTAACTAA+GGG + chr4_3:52049462-52049481 Msa0646310:intron 25.0%
! GTATTTGTCAATTTGCAAAA+AGG + chr4_3:52049519-52049538 Msa0646310:intron 25.0%
! TATGTAAGATCAAAACTTTG+TGG + chr4_3:52049613-52049632 Msa0646310:intron 25.0%
!! AAGAAAATTTGATGGTAAGT+TGG - chr4_3:52050023-52050042 None:intergenic 25.0%
! AATAACGAATGAAGAATCTT+TGG - chr4_3:52050055-52050074 None:intergenic 25.0%
!! CTTATACAAATGAACTTTTC+AGG + chr4_3:52050208-52050227 Msa0646310:intron 25.0%
!!! ATATATTTTTTGGAGCGAAT+AGG + chr4_3:52050395-52050414 Msa0646310:intron 25.0%
! TTGTTACTCAAATATGAAGA+TGG + chr4_3:52050460-52050479 Msa0646310:three_prime_UTR 25.0%
!!! TATTTCTTGATGACTTTTTG+AGG + chr4_3:52050521-52050540 Msa0646310:three_prime_UTR 25.0%
!! TTTTCTCATACTTAAAGAGT+GGG - chr4_3:52050643-52050662 None:intergenic 25.0%
!! ATTTTCTCATACTTAAAGAG+TGG - chr4_3:52050644-52050663 None:intergenic 25.0%
CCATTAGAATCTTCTATCAA+TGG - chr4_3:52045644-52045663 None:intergenic 30.0%
CCATTGATAGAAGATTCTAA+TGG + chr4_3:52045641-52045660 Msa0646310:five_prime_UTR 30.0%
TGAAATGTGAGTATTTGGAA+AGG - chr4_3:52045871-52045890 None:intergenic 30.0%
GTTCATGAAATGTGAGTATT+TGG - chr4_3:52045876-52045895 None:intergenic 30.0%
AATGCACATATCTTCATTCA+AGG + chr4_3:52046030-52046049 Msa0646310:intron 30.0%
!!! TAAAGCTTGGTTTTAAAGTC+AGG + chr4_3:52046255-52046274 Msa0646310:CDS 30.0%
!!! AAAGCTTGGTTTTAAAGTCA+GGG + chr4_3:52046256-52046275 Msa0646310:CDS 30.0%
GTAATAGAAAGGTTACTCTT+GGG + chr4_3:52046320-52046339 Msa0646310:intron 30.0%
! TTAAGTGGTTTGTCTAAACA+AGG + chr4_3:52046643-52046662 Msa0646310:intron 30.0%
! AACTATTAGTCATGTCACTT+CGG - chr4_3:52046669-52046688 None:intergenic 30.0%
GTTAAACAATTGAAGCTTGA+TGG + chr4_3:52046755-52046774 Msa0646310:CDS 30.0%
! GTTGGATAACAGAATGTTTT+TGG + chr4_3:52046839-52046858 Msa0646310:intron 30.0%
TGAAATTGTGGAATGTGATT+TGG + chr4_3:52046887-52046906 Msa0646310:CDS 30.0%
!! AATGCTGATTTAATCTGTTC+TGG - chr4_3:52046918-52046937 None:intergenic 30.0%
GAACAGATTAAATCAGCATT+AGG + chr4_3:52046918-52046937 Msa0646310:CDS 30.0%
ACCTTATCGAATAGATTACA+TGG + chr4_3:52047004-52047023 Msa0646310:CDS 30.0%
! TGTTTCAATGCTATTTGTGT+TGG + chr4_3:52047076-52047095 Msa0646310:intron 30.0%
! GTTTCAATGCTATTTGTGTT+GGG + chr4_3:52047077-52047096 Msa0646310:intron 30.0%
! TTCATATTGGTTACTTCACT+GGG + chr4_3:52047170-52047189 Msa0646310:CDS 30.0%
! CAAAGTATCTTCAGTTGATA+GGG - chr4_3:52047533-52047552 None:intergenic 30.0%
! ACAAAGTATCTTCAGTTGAT+AGG - chr4_3:52047534-52047553 None:intergenic 30.0%
TCAACTGAAGATACTTTGTT+TGG + chr4_3:52047535-52047554 Msa0646310:CDS 30.0%
! CAACTGAAGATACTTTGTTT+GGG + chr4_3:52047536-52047555 Msa0646310:CDS 30.0%
! AACTGAAGATACTTTGTTTG+GGG + chr4_3:52047537-52047556 Msa0646310:CDS 30.0%
TTTACATGATAAGTACCTGA+AGG - chr4_3:52047576-52047595 None:intergenic 30.0%
AACAGGAATGTTAAACTACT+AGG - chr4_3:52047877-52047896 None:intergenic 30.0%
CATTCCTGTTAATTGATGTA+CGG + chr4_3:52047887-52047906 Msa0646310:intron 30.0%
AAAACCGTACATCAATTAAC+AGG - chr4_3:52047894-52047913 None:intergenic 30.0%
! AATTGATGTACGGTTTTCTT+TGG + chr4_3:52047897-52047916 Msa0646310:intron 30.0%
GTCAACAAATATTAGCAATC+TGG - chr4_3:52048110-52048129 None:intergenic 30.0%
! GTTGACAGTCAATTTTTATG+TGG + chr4_3:52048124-52048143 Msa0646310:intron 30.0%
!! GTCAATTTTTATGTGGACTA+TGG + chr4_3:52048131-52048150 Msa0646310:intron 30.0%
!! AATTTTTATGTGGACTATGG+AGG + chr4_3:52048134-52048153 Msa0646310:intron 30.0%
! TTTATCTGTTTCTTGTCACT+AGG - chr4_3:52048235-52048254 None:intergenic 30.0%
!! TCTATTTCTGGAATGTTACT+TGG - chr4_3:52048298-52048317 None:intergenic 30.0%
TGAGAAATGACATCTATTTC+TGG - chr4_3:52048310-52048329 None:intergenic 30.0%
ATCACCACAAAATTAGAAAG+CGG - chr4_3:52048386-52048405 None:intergenic 30.0%
CCAAATTAAAGAGGTTTAGA+TGG - chr4_3:52048446-52048465 None:intergenic 30.0%
CCATCTAAACCTCTTTAATT+TGG + chr4_3:52048443-52048462 Msa0646310:intron 30.0%
GGAAAACAAACCACAAATTT+AGG - chr4_3:52048537-52048556 None:intergenic 30.0%
GCAGGTATATAAAATACACA+AGG - chr4_3:52048558-52048577 None:intergenic 30.0%
!! ATTGAGGAAGTATCAAGTAA+TGG + chr4_3:52048668-52048687 Msa0646310:CDS 30.0%
CCTCTCTTTCTTCTATAATA+AGG - chr4_3:52048843-52048862 None:intergenic 30.0%
CCTTATTATAGAAGAAAGAG+AGG + chr4_3:52048840-52048859 Msa0646310:intron 30.0%
AAGTGAGTGAATAAGTCTTA+TGG + chr4_3:52048933-52048952 Msa0646310:intron 30.0%
TGGTAATTGATGAATGTACT+AGG + chr4_3:52048953-52048972 Msa0646310:intron 30.0%
ATTGATGAATGTACTAGGTT+AGG + chr4_3:52048958-52048977 Msa0646310:intron 30.0%
TAGTGCGAAATTTACTATTG+TGG + chr4_3:52049045-52049064 Msa0646310:intron 30.0%
TTCCAAATTCGCAAAAATCA+GGG - chr4_3:52049130-52049149 None:intergenic 30.0%
TTTCCAAATTCGCAAAAATC+AGG - chr4_3:52049131-52049150 None:intergenic 30.0%
! ACTGTAAACTTTTAGTGGTA+GGG + chr4_3:52049191-52049210 Msa0646310:intron 30.0%
ACATTGATGTAGGATTAACA+TGG - chr4_3:52049254-52049273 None:intergenic 30.0%
!! TTCATAGGCAAATTAGTCTT+TGG - chr4_3:52049284-52049303 None:intergenic 30.0%
TCTGAAGACCTAAATTTCAT+AGG - chr4_3:52049299-52049318 None:intergenic 30.0%
TTTAGTGATTGCAATTGTGA+AGG - chr4_3:52049324-52049343 None:intergenic 30.0%
TAGTTAACTTCTTTCGTAAG+AGG - chr4_3:52049461-52049480 None:intergenic 30.0%
CTTACGAAAGAAGTTAACTA+AGG + chr4_3:52049461-52049480 Msa0646310:intron 30.0%
TTTGTCAATTTGCAAAAAGG+AGG + chr4_3:52049522-52049541 Msa0646310:intron 30.0%
TTGTCAATTTGCAAAAAGGA+GGG + chr4_3:52049523-52049542 Msa0646310:intron 30.0%
! GACCAAATCATACAATTTTG+AGG + chr4_3:52049554-52049573 Msa0646310:intron 30.0%
GTCCTCAAAATTGTATGATT+TGG - chr4_3:52049559-52049578 None:intergenic 30.0%
!! AATCATACAATTTTGAGGAC+AGG + chr4_3:52049559-52049578 Msa0646310:intron 30.0%
GTTGATACTGCATCAATATT+GGG - chr4_3:52049767-52049786 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG - chr4_3:52049768-52049787 None:intergenic 30.0%
GTTGATACTGCATCAATATT+GGG - chr4_3:52049767-52049786 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG - chr4_3:52049768-52049787 None:intergenic 30.0%
CTTGATACTGCATCAATATT+GGG - chr4_3:52049893-52049912 None:intergenic 30.0%
GAATCAACTTACATTGCAAA+AGG - chr4_3:52050001-52050020 None:intergenic 30.0%
ATTATAGAAGAGAGAAAGAG+AGG + chr4_3:52050072-52050091 Msa0646310:intron 30.0%
!!! AAATGAACTTTTCAGGTATG+AGG + chr4_3:52050215-52050234 Msa0646310:intron 30.0%
TCATCAAGAAATAAATGGCA+TGG - chr4_3:52050514-52050533 None:intergenic 30.0%
TCACATGAACTCTTCAAAAT+AGG - chr4_3:52050705-52050724 None:intergenic 30.0%
TGAAGAGTTCATGTGATTAA+TGG + chr4_3:52050709-52050728 Msa0646310:three_prime_UTR 30.0%
AGTATTTGGAAAGGTTGACA+TGG - chr4_3:52045862-52045881 None:intergenic 35.0%
GAGCTCTTATGATATTGCTA+CGG - chr4_3:52045934-52045953 None:intergenic 35.0%
ATCATAAGAGCTCAAGTTTC+AGG + chr4_3:52045941-52045960 Msa0646310:CDS 35.0%
AATTAAGTTCAGTACTGTGG+TGG - chr4_3:52046169-52046188 None:intergenic 35.0%
GTGAATTAAGTTCAGTACTG+TGG - chr4_3:52046172-52046191 None:intergenic 35.0%
AGCTGTCATAGTTTCATTCA+GGG + chr4_3:52046226-52046245 Msa0646310:intron 35.0%
!! CATTGGTTCAGGTAATAGAA+AGG + chr4_3:52046309-52046328 Msa0646310:intron 35.0%
GGTAATAGAAAGGTTACTCT+TGG + chr4_3:52046319-52046338 Msa0646310:intron 35.0%
TTGGGTGGTGATTTAACTAA+TGG + chr4_3:52046338-52046357 Msa0646310:intron 35.0%
TCTTATTCTCGTACTCTCAT+CGG + chr4_3:52046468-52046487 Msa0646310:intron 35.0%
ATCGGAATAAACCAACAACT+AGG + chr4_3:52046486-52046505 Msa0646310:intron 35.0%
GCTATAAACGCTTGATTAAG+TGG + chr4_3:52046628-52046647 Msa0646310:intron 35.0%
ATTGTTTAACACTCTGCACA+TGG - chr4_3:52046745-52046764 None:intergenic 35.0%
TTGACAAAATGTTGCTGTGT+TGG + chr4_3:52046821-52046840 Msa0646310:intron 35.0%
TGTAGAGAAGCTTGAAATTG+TGG + chr4_3:52046875-52046894 Msa0646310:CDS 35.0%
TCAACTGTAATATGCACCAT+TGG + chr4_3:52046948-52046967 Msa0646310:CDS 35.0%
GTCAAAAATTTCCTTCTCAC+TGG - chr4_3:52046976-52046995 None:intergenic 35.0%
GTAATCTATTCGATAAGGTC+CGG - chr4_3:52047003-52047022 None:intergenic 35.0%
GCCATGTAATCTATTCGATA+AGG - chr4_3:52047008-52047027 None:intergenic 35.0%
! GGTAACAAGAGCTTTTGTTA+TGG + chr4_3:52047050-52047069 Msa0646310:intron 35.0%
! CTTCATATTGGTTACTTCAC+TGG + chr4_3:52047169-52047188 Msa0646310:CDS 35.0%
TCACTGGGAACAAACAAATT+TGG + chr4_3:52047185-52047204 Msa0646310:CDS 35.0%
TCACAATGACTTACTGTGTA+TGG - chr4_3:52047374-52047393 None:intergenic 35.0%
! ACTGAAGATACTTTGTTTGG+GGG + chr4_3:52047538-52047557 Msa0646310:CDS 35.0%
!! GTTGATAACTCTCTCAATTC+AGG + chr4_3:52047645-52047664 Msa0646310:intron 35.0%
! TTTGCAAGAAGTTTTTCTGC+AGG - chr4_3:52047763-52047782 None:intergenic 35.0%
!! TATACGGAAGTACTTACCTT+GGG - chr4_3:52047817-52047836 None:intergenic 35.0%
!! ATATACGGAAGTACTTACCT+TGG - chr4_3:52047818-52047837 None:intergenic 35.0%
! TTGTTCTGTTTCTTTCTGAG+GGG - chr4_3:52047987-52048006 None:intergenic 35.0%
! GTTGTTCTGTTTCTTTCTGA+GGG - chr4_3:52047988-52048007 None:intergenic 35.0%
AGACAACAACTTCCTCAAAA+GGG + chr4_3:52048329-52048348 Msa0646310:CDS 35.0%
!! TAAGCCGCTTTCTAATTTTG+TGG + chr4_3:52048379-52048398 Msa0646310:intron 35.0%
TCATAGCTGCCAAATTAAAG+AGG - chr4_3:52048455-52048474 None:intergenic 35.0%
!! TCTTTAATTTGGCAGCTATG+AGG + chr4_3:52048454-52048473 Msa0646310:intron 35.0%
! TTTCATAACAAGGTATCTGC+AGG - chr4_3:52048488-52048507 None:intergenic 35.0%
! TACTTTAGCACTTTTATCCG+TGG + chr4_3:52048508-52048527 Msa0646310:intron 35.0%
! ACCACAAATTTAGGATACCA+CGG - chr4_3:52048528-52048547 None:intergenic 35.0%
CTTTAAATCAGGATATCTGC+AGG - chr4_3:52048576-52048595 None:intergenic 35.0%
! ATTGATGTAGTTGGTGCATT+AGG - chr4_3:52048617-52048636 None:intergenic 35.0%
GATGTGGATATTGATGTAGT+TGG - chr4_3:52048626-52048645 None:intergenic 35.0%
ATCAATATCCACATCTTCTG+TGG + chr4_3:52048631-52048650 Msa0646310:CDS 35.0%
TCAATATCCACATCTTCTGT+GGG + chr4_3:52048632-52048651 Msa0646310:CDS 35.0%
ACTTGATACTTCCTCAATCT+TGG - chr4_3:52048666-52048685 None:intergenic 35.0%
TACATTGCATAAGGTGAAAG+TGG - chr4_3:52048764-52048783 None:intergenic 35.0%
!! AATAAGGAATGGAGAGCATT+TGG - chr4_3:52048827-52048846 None:intergenic 35.0%
!! TGATTAAGCCAAAAGCATCA+AGG + chr4_3:52048999-52049018 Msa0646310:intron 35.0%
TACTGATGCTTACAATTTCG+AGG - chr4_3:52049099-52049118 None:intergenic 35.0%
! GTCTCACTGTAAACTTTTAG+TGG + chr4_3:52049186-52049205 Msa0646310:intron 35.0%
! CACTGTAAACTTTTAGTGGT+AGG + chr4_3:52049190-52049209 Msa0646310:intron 35.0%
TGACATGTTAACTGAATACG+TGG + chr4_3:52049223-52049242 Msa0646310:intron 35.0%
ATGAAATTTAGGCCATCTCA+AGG - chr4_3:52049355-52049374 None:intergenic 35.0%
AAGATCAAAACTTTGTGGAC+AGG + chr4_3:52049618-52049637 Msa0646310:intron 35.0%
TTCGTGGTATCAAAACTTTG+TGG + chr4_3:52049651-52049670 Msa0646310:intron 35.0%
!! GGTTTGTTTTTCTTGTGTAC+AGG + chr4_3:52049672-52049691 Msa0646310:intron 35.0%
ATGGATACTGCATCAGTATT+GGG - chr4_3:52049809-52049828 None:intergenic 35.0%
TATGGATACTGCATCAGTAT+TGG - chr4_3:52049810-52049829 None:intergenic 35.0%
GCTTGATACTGCATCAATAT+TGG - chr4_3:52049894-52049913 None:intergenic 35.0%
ATTGATGCAGTATCAAGCAA+TGG + chr4_3:52049896-52049915 Msa0646310:CDS 35.0%
TACATTGCAAAAGGTGAAAG+TGG - chr4_3:52049992-52050011 None:intergenic 35.0%
CATGAACTCTTCAAAATAGG+TGG - chr4_3:52050702-52050721 None:intergenic 35.0%
! CCTTTGCTATGTGTGGATAT+TGG - chr4_3:52045609-52045628 None:intergenic 40.0%
CCAATATCCACACATAGCAA+AGG + chr4_3:52045606-52045625 Msa0646310:five_prime_UTR 40.0%
GAATCTTCTATCAATGGCAG+TGG - chr4_3:52045638-52045657 None:intergenic 40.0%
! GGAAGTATGAACTCTTTGGT+GGG - chr4_3:52045741-52045760 None:intergenic 40.0%
! TGGAAGTATGAACTCTTTGG+TGG - chr4_3:52045742-52045761 None:intergenic 40.0%
! GGATGGAAGTATGAACTCTT+TGG - chr4_3:52045745-52045764 None:intergenic 40.0%
CATTGGTATGGCTTAAAGGA+TGG - chr4_3:52045762-52045781 None:intergenic 40.0%
CATCCTTTAAGCCATACCAA+TGG + chr4_3:52045760-52045779 Msa0646310:exon 40.0%
TTGGAATCTTTCTTCTCAGC+AGG - chr4_3:52046072-52046091 None:intergenic 40.0%
TGCTGAGAAGAAAGATTCCA+AGG + chr4_3:52046071-52046090 Msa0646310:CDS 40.0%
! AAGTTGGTTCAAGAACAGTC+AGG + chr4_3:52046130-52046149 Msa0646310:CDS 40.0%
GAGCTGTCATAGTTTCATTC+AGG + chr4_3:52046225-52046244 Msa0646310:intron 40.0%
TTCAGGGAGCTTATAAAGCT+TGG + chr4_3:52046242-52046261 Msa0646310:intron 40.0%
ATAGAAAGGTTACTCTTGGG+TGG + chr4_3:52046323-52046342 Msa0646310:intron 40.0%
! AGATTGTTTACGAGAGCGTA+TGG + chr4_3:52046411-52046430 Msa0646310:intron 40.0%
TGATAAGCTATCCTGAGCTT+AGG - chr4_3:52046512-52046531 None:intergenic 40.0%
! TTGAAGCTTGATGGTACAAG+TGG + chr4_3:52046764-52046783 Msa0646310:CDS 40.0%
TTTCAAGCTTCTCTACAGCT+GGG - chr4_3:52046872-52046891 None:intergenic 40.0%
ATTTCAAGCTTCTCTACAGC+TGG - chr4_3:52046873-52046892 None:intergenic 40.0%
!! AGCATCAACTAGGTTTTTGG+TGG - chr4_3:52047030-52047049 None:intergenic 40.0%
! ACCAAAAACCTAGTTGATGC+TGG + chr4_3:52047029-52047048 Msa0646310:CDS 40.0%
! ACCAGCATCAACTAGGTTTT+TGG - chr4_3:52047033-52047052 None:intergenic 40.0%
TCTTGTTACCAGCATCAACT+AGG - chr4_3:52047040-52047059 None:intergenic 40.0%
!! TATTTTGGGGAGTCTTGTGT+TGG + chr4_3:52047309-52047328 Msa0646310:CDS 40.0%
! AGTCTTGTGTTGGAAAAGGA+AGG + chr4_3:52047319-52047338 Msa0646310:CDS 40.0%
! GACACTCTTTTCAGATAGTG+AGG + chr4_3:52047455-52047474 Msa0646310:intron 40.0%
GTTTCCTTGTAAGCATCAGT+AGG - chr4_3:52047499-52047518 None:intergenic 40.0%
!! AATTCAGGTTGCTGAACTCA+TGG + chr4_3:52047660-52047679 Msa0646310:intron 40.0%
! AGTTTTTCTGCAGGTGTCAA+TGG - chr4_3:52047754-52047773 None:intergenic 40.0%
ATGTTAAACTACTAGGCAGG+AGG - chr4_3:52047870-52047889 None:intergenic 40.0%
GGAATGTTAAACTACTAGGC+AGG - chr4_3:52047873-52047892 None:intergenic 40.0%
! GATGTACGGTTTTCTTTGGA+AGG + chr4_3:52047901-52047920 Msa0646310:intron 40.0%
! GGTTGTTCTGTTTCTTTCTG+AGG - chr4_3:52047989-52048008 None:intergenic 40.0%
! TCTTTCTGAGGAGTAATGCT+AGG - chr4_3:52048031-52048050 None:intergenic 40.0%
! GGTTGTTCTGTTTCTTTCTG+AGG - chr4_3:52047989-52048008 None:intergenic 40.0%
TACGCAGTATAAGGAGAAAG+CGG - chr4_3:52048085-52048104 None:intergenic 40.0%
! AATCTGGCTTACGCAGTATA+AGG - chr4_3:52048094-52048113 None:intergenic 40.0%
TGGAGGCCAAATAACTAAGT+TGG + chr4_3:52048151-52048170 Msa0646310:intron 40.0%
CAGACAACAACTTCCTCAAA+AGG + chr4_3:52048328-52048347 Msa0646310:CDS 40.0%
AACAACTTCCTCAAAAGGGA+AGG + chr4_3:52048333-52048352 Msa0646310:CDS 40.0%
TCCGTGGTATCCTAAATTTG+TGG + chr4_3:52048524-52048543 Msa0646310:intron 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG - chr4_3:52048587-52048606 None:intergenic 40.0%
TATAGAAGAAAGAGAGGGGA+TGG + chr4_3:52048846-52048865 Msa0646310:intron 40.0%
! CCATGAATCCTTGATGCTTT+TGG - chr4_3:52049010-52049029 None:intergenic 40.0%
!! CCAAAAGCATCAAGGATTCA+TGG + chr4_3:52049007-52049026 Msa0646310:intron 40.0%
! GTCCCTGATTTTTGCGAATT+TGG + chr4_3:52049125-52049144 Msa0646310:intron 40.0%
!! AGGCAAATTAGTCTTTGGTG+TGG - chr4_3:52049279-52049298 None:intergenic 40.0%
CAAATTAGCTCCTAGTGAGT+TGG + chr4_3:52049378-52049397 Msa0646310:intron 40.0%
!! TGCACTTTGAAACCACATCA+AGG - chr4_3:52049404-52049423 None:intergenic 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG - chr4_3:52048587-52048606 None:intergenic 40.0%
! GAAGATGTCTTTGGTGCATT+AGG - chr4_3:52049731-52049750 None:intergenic 40.0%
! AAAGACATCTTCAGTGGGTT+CGG + chr4_3:52049739-52049758 Msa0646310:CDS 40.0%
TGCAGTATCAACATCTTCTG+TGG + chr4_3:52049775-52049794 Msa0646310:CDS 40.0%
GCAGTATCAACATCTTCTGT+GGG + chr4_3:52049776-52049795 Msa0646310:CDS 40.0%
TATCAACATCTTCTGTGGGT+GGG + chr4_3:52049780-52049799 Msa0646310:CDS 40.0%
ATCCATATCTTCTGTGAGTG+AGG + chr4_3:52049823-52049842 Msa0646310:CDS 40.0%
TGCAGTATCAACATCTTCTG+TGG + chr4_3:52049775-52049794 Msa0646310:CDS 40.0%
GCAGTATCAACATCTTCTGT+GGG + chr4_3:52049776-52049795 Msa0646310:CDS 40.0%
TATCAACATCTTCTGTGGGT+GGG + chr4_3:52049780-52049799 Msa0646310:CDS 40.0%
TGTATCTTCCACTGAGAGTT+GGG - chr4_3:52049927-52049946 None:intergenic 40.0%
ACCATCCGAGTTCAATCAAA+CGG - chr4_3:52050155-52050174 None:intergenic 40.0%
!! GATTTTCTGAAGGAAGGTGA+TGG - chr4_3:52050261-52050280 None:intergenic 40.0%
ACCTTCCTTCAGAAAATCCT+AGG + chr4_3:52050263-52050282 Msa0646310:CDS 40.0%
!! TCCTAGGATTTTCTGAAGGA+AGG - chr4_3:52050267-52050286 None:intergenic 40.0%
! CAGTTCCTAGGATTTTCTGA+AGG - chr4_3:52050271-52050290 None:intergenic 40.0%
TGTCTGATTCCATATGAAGG+AGG - chr4_3:52050294-52050313 None:intergenic 40.0%
CCTTGTCTGATTCCATATGA+AGG - chr4_3:52050297-52050316 None:intergenic 40.0%
CCTTCATATGGAATCAGACA+AGG + chr4_3:52050294-52050313 Msa0646310:three_prime_UTR 40.0%
ATTATGCACACTACGTACAC+TGG + chr4_3:52050359-52050378 Msa0646310:intron 40.0%
AGTTTATGTAGCAACCCACA+TGG + chr4_3:52050433-52050452 Msa0646310:three_prime_UTR 40.0%
TGAGTAACAATCCTCCATGT+GGG - chr4_3:52050450-52050469 None:intergenic 40.0%
TTGAGTAACAATCCTCCATG+TGG - chr4_3:52050451-52050470 None:intergenic 40.0%
GATGGAAGCAACTATGTGAA+TGG + chr4_3:52050478-52050497 Msa0646310:three_prime_UTR 40.0%
! GTGCAATCCTTTGCTATGTG+TGG - chr4_3:52045616-52045635 None:intergenic 45.0%
CCTCCATTGGTATGGCTTAA+AGG - chr4_3:52045766-52045785 None:intergenic 45.0%
CCTTTAAGCCATACCAATGG+AGG + chr4_3:52045763-52045782 Msa0646310:exon 45.0%
TGAGAAAGCCTCCATTGGTA+TGG - chr4_3:52045774-52045793 None:intergenic 45.0%
TCTCTACGTGTTAGAGAGGA+GGG - chr4_3:52045815-52045834 None:intergenic 45.0%
!! TGGAAGGTGTTGTGGTGAAA+GGG - chr4_3:52045901-52045920 None:intergenic 45.0%
ATTGCTACGGATTCTACTCC+TGG - chr4_3:52045921-52045940 None:intergenic 45.0%
! GAGCTCAAGTTTCAGGTGAT+AGG + chr4_3:52045948-52045967 Msa0646310:intron 45.0%
!! GTATTTGTTGCTGGTGCTAC+TGG + chr4_3:52046105-52046124 Msa0646310:CDS 45.0%
!!! CTTGGTTTTAAAGTCAGGGC+TGG + chr4_3:52046260-52046279 Msa0646310:CDS 45.0%
TTAAAGTCAGGGCTGGAGTA+AGG + chr4_3:52046267-52046286 Msa0646310:CDS 45.0%
! AAGCTTGATGGTACAAGTGG+AGG + chr4_3:52046767-52046786 Msa0646310:CDS 45.0%
! AGCTTGATGGTACAAGTGGA+GGG + chr4_3:52046768-52046787 Msa0646310:CDS 45.0%
ACTCACTTGAGAATAGCTGC+AGG - chr4_3:52047215-52047234 None:intergenic 45.0%
! TCTTTTCAGATAGTGAGGCC+TGG + chr4_3:52047460-52047479 Msa0646310:intron 45.0%
AAGTTCCGGATTCTTAGCCA+TGG - chr4_3:52047689-52047708 None:intergenic 45.0%
!! CGGTTTTCTTTGGAAGGTAC+AGG + chr4_3:52047907-52047926 Msa0646310:intron 45.0%
TTACTGACAGCTGCAGTATC+TGG - chr4_3:52047935-52047954 None:intergenic 45.0%
AACAGAACAACCAGAACCAG+TGG + chr4_3:52047997-52048016 Msa0646310:CDS 45.0%
AACAGAACAACCGAAACCAG+TGG + chr4_3:52048051-52048070 Msa0646310:CDS 45.0%
TTCTTGTCACTAGGCTTGAC+TGG - chr4_3:52048226-52048245 None:intergenic 45.0%
GCATCTGAAGAACTAGGTGT+TGG - chr4_3:52048274-52048293 None:intergenic 45.0%
! CTTGGAGCATCTGAAGAACT+AGG - chr4_3:52048280-52048299 None:intergenic 45.0%
! AAGAGACTCCTTCCCTTTTG+AGG - chr4_3:52048344-52048363 None:intergenic 45.0%
TTAGGAGATGGTGAACTAGG+AGG - chr4_3:52048599-52048618 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG - chr4_3:52048602-52048621 None:intergenic 45.0%
! GTAGTTGGTGCATTAGGAGA+TGG - chr4_3:52048611-52048630 None:intergenic 45.0%
CTTCCACTGAAAGTTGAGCT+GGG - chr4_3:52048694-52048713 None:intergenic 45.0%
TCTTCCACTGAAAGTTGAGC+TGG - chr4_3:52048695-52048714 None:intergenic 45.0%
ATTCTGTCCATCATCCTGTG+GGG - chr4_3:52048720-52048739 None:intergenic 45.0%
GATTCTGTCCATCATCCTGT+GGG - chr4_3:52048721-52048740 None:intergenic 45.0%
AGATTCTGTCCATCATCCTG+TGG - chr4_3:52048722-52048741 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG - chr4_3:52048752-52048771 None:intergenic 45.0%
GATAGCTGTTCAGGACACAT+TGG + chr4_3:52048872-52048891 Msa0646310:intron 45.0%
GACAGGTTTAGCACAATTCG+TGG + chr4_3:52049635-52049654 Msa0646310:intron 45.0%
TTAGGAGATGGTGAACTAGG+AGG - chr4_3:52048599-52048618 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG - chr4_3:52048602-52048621 None:intergenic 45.0%
! GTCTTTGGTGCATTAGGAGA+TGG - chr4_3:52049725-52049744 None:intergenic 45.0%
TGCACCAAAGACATCTTCAG+TGG + chr4_3:52049733-52049752 Msa0646310:CDS 45.0%
GCACCAAAGACATCTTCAGT+GGG + chr4_3:52049734-52049753 Msa0646310:CDS 45.0%
GAACCCACTGAAGATGTCTT+TGG - chr4_3:52049740-52049759 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG + chr4_3:52049779-52049798 Msa0646310:CDS 45.0%
ATCAACATCTTCTGTGGGTG+GGG + chr4_3:52049781-52049800 Msa0646310:CDS 45.0%
CACCTCACTCACAGAAGATA+TGG - chr4_3:52049828-52049847 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG + chr4_3:52049779-52049798 Msa0646310:CDS 45.0%
ATCAACATCTTCTGTGGGTG+GGG + chr4_3:52049781-52049800 Msa0646310:CDS 45.0%
GTGTATCTTCCACTGAGAGT+TGG - chr4_3:52049928-52049947 None:intergenic 45.0%
CTCAGTGGAAGATACACCAA+AGG + chr4_3:52049931-52049950 Msa0646310:CDS 45.0%
AGTGGAAGATACACCAAAGG+AGG + chr4_3:52049934-52049953 Msa0646310:CDS 45.0%
TACACCAAAGGAGGATGAAC+AGG + chr4_3:52049943-52049962 Msa0646310:CDS 45.0%
AGATCCTGTTCATCCTCCTT+TGG - chr4_3:52049950-52049969 None:intergenic 45.0%
! GTGGTCTTGACTTTGGTTCA+TGG - chr4_3:52049973-52049992 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG - chr4_3:52048752-52048771 None:intergenic 45.0%
GGAAGCCGTTTGATTGAACT+CGG + chr4_3:52050147-52050166 Msa0646310:intron 45.0%
ATATGAAGGAGGCAGTTCCT+AGG - chr4_3:52050283-52050302 None:intergenic 45.0%
TAGGAACTGCCTCCTTCATA+TGG + chr4_3:52050282-52050301 Msa0646310:exon 45.0%
TTATGTAGCAACCCACATGG+AGG + chr4_3:52050436-52050455 Msa0646310:three_prime_UTR 45.0%
GTGAGTGAGAAAGCCTCCAT+TGG - chr4_3:52045779-52045798 None:intergenic 50.0%
AGAGGAGGGAATGGTAGTTG+AGG - chr4_3:52045801-52045820 None:intergenic 50.0%
ACGTGTTAGAGAGGAGGGAA+TGG - chr4_3:52045810-52045829 None:intergenic 50.0%
CTCTCTACGTGTTAGAGAGG+AGG - chr4_3:52045816-52045835 None:intergenic 50.0%
CTCCTCTCTAACACGTAGAG+AGG + chr4_3:52045814-52045833 Msa0646310:CDS 50.0%
AGCCTCTCTACGTGTTAGAG+AGG - chr4_3:52045819-52045838 None:intergenic 50.0%
GCTGCAGCTGTTAAACCTTC+TGG + chr4_3:52045836-52045855 Msa0646310:CDS 50.0%
GAAAGGTTGACATGGCCAGA+AGG - chr4_3:52045854-52045873 None:intergenic 50.0%
!! CTGGAAGGTGTTGTGGTGAA+AGG - chr4_3:52045902-52045921 None:intergenic 50.0%
CTTTCACCACAACACCTTCC+AGG + chr4_3:52045900-52045919 Msa0646310:CDS 50.0%
!! TCTACTCCTGGAAGGTGTTG+TGG - chr4_3:52045909-52045928 None:intergenic 50.0%
CTACGGATTCTACTCCTGGA+AGG - chr4_3:52045917-52045936 None:intergenic 50.0%
!! GCTGGTGCTACTGGAAAAGT+TGG + chr4_3:52046114-52046133 Msa0646310:CDS 50.0%
CTGAGCTTAGGCCTAGTTGT+TGG - chr4_3:52046500-52046519 None:intergenic 50.0%
CAACAACTAGGCCTAAGCTC+AGG + chr4_3:52046498-52046517 Msa0646310:intron 50.0%
TTCCTTCTCACTGGCACCAA+TGG - chr4_3:52046967-52046986 None:intergenic 50.0%
! GGGGAGTCTTGTGTTGGAAA+AGG + chr4_3:52047315-52047334 Msa0646310:CDS 50.0%
GTGTTGGAAAAGGAAGGCAG+AGG + chr4_3:52047325-52047344 Msa0646310:CDS 50.0%
!! GAGGAAGCATTGCTAGCAAG+TGG + chr4_3:52047344-52047363 Msa0646310:CDS 50.0%
TTTCAGATAGTGAGGCCTGG+AGG + chr4_3:52047463-52047482 Msa0646310:intron 50.0%
GAGGCCTACTGATGCTTACA+AGG + chr4_3:52047492-52047511 Msa0646310:CDS 50.0%
GGGACAAGTGTCAAACCTTC+AGG + chr4_3:52047558-52047577 Msa0646310:CDS 50.0%
TGTCAATGGCGCAGTTGTCT+CGG - chr4_3:52047740-52047759 None:intergenic 50.0%
!! GGAATGTAAGGGCGTTGAGA+AGG - chr4_3:52047790-52047809 None:intergenic 50.0%
CCTTGGGCGAAGGAATGTAA+GGG - chr4_3:52047801-52047820 None:intergenic 50.0%
ACCTTGGGCGAAGGAATGTA+AGG - chr4_3:52047802-52047821 None:intergenic 50.0%
! GAAGTACTTACCTTGGGCGA+AGG - chr4_3:52047811-52047830 None:intergenic 50.0%
TGTCAGTAATCCAGCTCCCT+CGG + chr4_3:52047946-52047965 Msa0646310:CDS 50.0%
!!! GGCTGTTTTGCCACTGGTTT+CGG - chr4_3:52048064-52048083 None:intergenic 50.0%
TTGACTGGAGAAGGGGATGA+CGG - chr4_3:52048211-52048230 None:intergenic 50.0%
ACTAGGCTTGACTGGAGAAG+GGG - chr4_3:52048218-52048237 None:intergenic 50.0%
CACTAGGCTTGACTGGAGAA+GGG - chr4_3:52048219-52048238 None:intergenic 50.0%
TCACTAGGCTTGACTGGAGA+AGG - chr4_3:52048220-52048239 None:intergenic 50.0%
AAAGCGGCTTACGCTGCAAA+AGG - chr4_3:52048370-52048389 None:intergenic 50.0%
ATCCACATCTTCTGTGGGTG+AGG + chr4_3:52048637-52048656 Msa0646310:CDS 50.0%
! GTGGTCTTGACTTTGGCTCA+TGG - chr4_3:52048745-52048764 None:intergenic 50.0%
GGATGGTGAGATAGCTGTTC+AGG + chr4_3:52048863-52048882 Msa0646310:intron 50.0%
TGGTGTGGCGACATTGATGT+AGG - chr4_3:52049264-52049283 None:intergenic 50.0%
CACATCAAGGCCAACTCACT+AGG - chr4_3:52049391-52049410 None:intergenic 50.0%
!! CTAGTGAGTTGGCCTTGATG+TGG + chr4_3:52049389-52049408 Msa0646310:intron 50.0%
TCCTTGACCTTGGGGAATTC+AGG - chr4_3:52050100-52050119 None:intergenic 50.0%
TGCAGGATTCCTTGACCTTG+GGG - chr4_3:52050108-52050127 None:intergenic 50.0%
CTGCAGGATTCCTTGACCTT+GGG - chr4_3:52050109-52050128 None:intergenic 50.0%
ACTGCAGGATTCCTTGACCT+TGG - chr4_3:52050110-52050129 None:intergenic 50.0%
CAGTCATGCAGTCACTGCAT+TGG + chr4_3:52050126-52050145 Msa0646310:intron 50.0%
GCCGTTTGATTGAACTCGGA+TGG + chr4_3:52050151-52050170 Msa0646310:intron 50.0%
! AAGGAAGGTGATGGTGATGC+AGG - chr4_3:52050252-52050271 None:intergenic 50.0%
!! GTAAGGAGTGCTCAGAGAGC+TGG + chr4_3:52046284-52046303 Msa0646310:CDS 55.0%
TGCTCAGAGAGCTGGTGCAT+TGG + chr4_3:52046292-52046311 Msa0646310:CDS 55.0%
!! GAGAGCTGGTGCATTGGTTC+AGG + chr4_3:52046298-52046317 Msa0646310:CDS 55.0%
GGTACAAGTGGAGGGAGTGA+AGG + chr4_3:52046776-52046795 Msa0646310:CDS 55.0%
!! CACCATTGGTGCCAGTGAGA+AGG + chr4_3:52046962-52046981 Msa0646310:CDS 55.0%
TGCTGAACTCATGGCAGCCA+TGG + chr4_3:52047669-52047688 Msa0646310:CDS 55.0%
GGCAGCCATGGCTAAGAATC+CGG + chr4_3:52047681-52047700 Msa0646310:CDS 55.0%
CCCTTACATTCCTTCGCCCA+AGG + chr4_3:52047798-52047817 Msa0646310:CDS 55.0%
AGCTCCCTCGGCTAATGTCA+CGG + chr4_3:52047958-52047977 Msa0646310:CDS 55.0%
GCTTCCGTGACATTAGCCGA+GGG - chr4_3:52047965-52047984 None:intergenic 55.0%
ATGCTAGGCACTTCTGCCAC+TGG - chr4_3:52048016-52048035 None:intergenic 55.0%
!! GAAAGCGGCTGTTTTGCCAC+TGG - chr4_3:52048070-52048089 None:intergenic 55.0%
CACCTCACCCACAGAAGATG+TGG - chr4_3:52048642-52048661 None:intergenic 55.0%
CACATCTTCTGTGGGTGAGG+TGG + chr4_3:52048640-52048659 Msa0646310:CDS 55.0%
TGGCCCAGCTCAACTTTCAG+TGG + chr4_3:52048688-52048707 Msa0646310:CDS 55.0%
TTCAGTGGAAGACACCCCAC+AGG + chr4_3:52048703-52048722 Msa0646310:CDS 55.0%
GAAGACACCCCACAGGATGA+TGG + chr4_3:52048710-52048729 Msa0646310:CDS 55.0%
TCTTCCACTGAGAGTTGGGC+TGG - chr4_3:52049923-52049942 None:intergenic 55.0%
AGAGGAGCCTGAATTCCCCA+AGG + chr4_3:52050090-52050109 Msa0646310:intron 55.0%
GCCTGAATTCCCCAAGGTCA+AGG + chr4_3:52050096-52050115 Msa0646310:intron 55.0%
TGCAGTGACTGCATGACTGC+AGG - chr4_3:52050125-52050144 None:intergenic 55.0%
! GAAGGTGATGGTGATGCAGG+AGG - chr4_3:52050249-52050268 None:intergenic 55.0%
ATTACACCGAAGCGCAGCGC+AGG + chr4_3:52047399-52047418 Msa0646310:intron 60.0%
TTACACCGAAGCGCAGCGCA+GGG + chr4_3:52047400-52047419 Msa0646310:intron 60.0%
GATAGTGAGGCCTGGAGGCA+TGG + chr4_3:52047468-52047487 Msa0646310:intron 60.0%
GTGACATTAGCCGAGGGAGC+TGG - chr4_3:52047959-52047978 None:intergenic 60.0%
GGCTTCCGTGACATTAGCCG+AGG - chr4_3:52047966-52047985 None:intergenic 60.0%
!! GGCACTTCTGCCACTGGTTC+TGG - chr4_3:52048010-52048029 None:intergenic 60.0%
! ACTGGAGAAGGGGATGACGG+TGG - chr4_3:52048208-52048227 None:intergenic 60.0%
GGGTGAGGTGGCCAAGATTG+AGG + chr4_3:52048652-52048671 Msa0646310:CDS 60.0%
TGGACCAGCCCAACTCTCAG+TGG + chr4_3:52049916-52049935 Msa0646310:CDS 60.0%
TAGGACCCTGCGCTGCGCTT+CGG - chr4_3:52047408-52047427 None:intergenic 65.0%
! TGAGGCCTGGAGGCATGGAG+AGG + chr4_3:52047473-52047492 Msa0646310:CDS 65.0%
GTAGGCCTCTCCATGCCTCC+AGG - chr4_3:52047481-52047500 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52045601 52050788 52045601 ID=Msa0646310;Name=Msa0646310
chr4_3 mRNA 52045601 52050788 52045601 ID=Msa0646310-mRNA-1;Parent=Msa0646310;Name=Msa0646310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=178|1|1|1|0.92|0.86|15|403|645
chr4_3 exon 52045601 52045962 52045601 ID=Msa0646310-mRNA-1:exon:12671;Parent=Msa0646310-mRNA-1
chr4_3 exon 52046052 52046151 52046052 ID=Msa0646310-mRNA-1:exon:12672;Parent=Msa0646310-mRNA-1
chr4_3 exon 52046247 52046319 52046247 ID=Msa0646310-mRNA-1:exon:12673;Parent=Msa0646310-mRNA-1
chr4_3 exon 52046752 52046797 52046752 ID=Msa0646310-mRNA-1:exon:12674;Parent=Msa0646310-mRNA-1
chr4_3 exon 52046874 52047050 52046874 ID=Msa0646310-mRNA-1:exon:12675;Parent=Msa0646310-mRNA-1
chr4_3 exon 52047147 52047228 52047147 ID=Msa0646310-mRNA-1:exon:12676;Parent=Msa0646310-mRNA-1
chr4_3 exon 52047307 52047379 52047307 ID=Msa0646310-mRNA-1:exon:12677;Parent=Msa0646310-mRNA-1
chr4_3 exon 52047469 52047579 52047469 ID=Msa0646310-mRNA-1:exon:12678;Parent=Msa0646310-mRNA-1
chr4_3 exon 52047667 52047819 52047667 ID=Msa0646310-mRNA-1:exon:12679;Parent=Msa0646310-mRNA-1
chr4_3 exon 52047923 52048101 52047923 ID=Msa0646310-mRNA-1:exon:12680;Parent=Msa0646310-mRNA-1
chr4_3 exon 52048189 52048377 52048189 ID=Msa0646310-mRNA-1:exon:12681;Parent=Msa0646310-mRNA-1
chr4_3 exon 52048580 52048780 52048580 ID=Msa0646310-mRNA-1:exon:12682;Parent=Msa0646310-mRNA-1
chr4_3 exon 52049694 52050008 52049694 ID=Msa0646310-mRNA-1:exon:12683;Parent=Msa0646310-mRNA-1
chr4_3 exon 52050230 52050315 52050230 ID=Msa0646310-mRNA-1:exon:12684;Parent=Msa0646310-mRNA-1
chr4_3 exon 52050417 52050788 52050417 ID=Msa0646310-mRNA-1:exon:12685;Parent=Msa0646310-mRNA-1
chr4_3 five_prime_UTR 52045601 52045778 52045601 ID=Msa0646310-mRNA-1:five_prime_utr;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52045779 52045962 52045779 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52046052 52046151 52046052 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52046247 52046319 52046247 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52046752 52046797 52046752 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52046874 52047050 52046874 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52047147 52047228 52047147 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52047307 52047379 52047307 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52047469 52047579 52047469 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52047667 52047819 52047667 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52047923 52048101 52047923 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52048189 52048377 52048189 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52048580 52048780 52048580 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52049694 52050008 52049694 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 CDS 52050230 52050284 52050230 ID=Msa0646310-mRNA-1:cds;Parent=Msa0646310-mRNA-1
chr4_3 three_prime_UTR 52050285 52050315 52050285 ID=Msa0646310-mRNA-1:three_prime_utr;Parent=Msa0646310-mRNA-1
chr4_3 three_prime_UTR 52050417 52050788 52050417 ID=Msa0646310-mRNA-1:three_prime_utr;Parent=Msa0646310-mRNA-1
Gene Sequence

>Msa0646310

ATGGAGGCTTTCTCACTCACCTCAACTACCATTCCCTCCTCTCTAACACGTAGAGAGGCTGCAGCTGTTAAACCTTCTGGCCATGTCAACCTTTCCAAATACTCACATTTCATGAACTACCCTTTCACCACAACACCTTCCAGGAGTAGAATCCGTAGCAATATCATAAGAGCTCAAGTTTCAGGTTCAACAAAATCTAGTCCTGCTGAGAAGAAAGATTCCAAGGATGATAATTTAGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTCAGGGAGCTTATAAAGCTTGGTTTTAAAGTCAGGGCTGGAGTAAGGAGTGCTCAGAGAGCTGGTGCATTGGTTCAGAGTGTTAAACAATTGAAGCTTGATGGTACAAGTGGAGGGAGTGAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGAACAGATTAAATCAGCATTAGGGAATGCATCAACTGTAATATGCACCATTGGTGCCAGTGAGAAGGAAATTTTTGACATTACCGGACCTTATCGAATAGATTACATGGCCACCAAAAACCTAGTTGATGCTGCATCTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAATTTATTTTGGGGAGTCTTGTGTTGGAAAAGGAAGGCAGAGGAAGCATTGCTAGCAAGTGGAATTCCATACACAATAGTGAGGCCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGGAAACTCATAATGTAACCCTATCAACTGAAGATACTTTGTTTGGGGGACAAGTGTCAAACCTTCAGGTTGCTGAACTCATGGCAGCCATGGCTAAGAATCCGGAACTTTCATATTGTAAAATAGTGGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCAGAAAAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTCCTTCGCCCAAGGTACAGGAACCAGATACTGCAGCTGTCAGTAATCCAGCTCCCTCGGCTAATGTCACGGAAGCCCCTCAGAAAGAAACAGAACAACCAGAACCAGTGGCAGAAGTGCCTAGCATTACTCCTCAGAAAGAAACAGAACAACCGAAACCAGTGGCAAAACAGCCGCTTTCTCCTTATACTGCTTATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTCAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGAAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCATATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCACAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAAGACATCTTCAGTGGGTTCGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGAACAGGATCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGAAAATCCTAG
Protein sequence

>Msa0646310

MEAFSLTSTTIPSSLTRREAAAVKPSGHVNLSKYSHFMNYPFTTTPSRSRIRSNIIRAQVSGSTKSSPAEKKDSKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGALVQSVKQLKLDGTSGGSEAVEKLEIVECDLEKPEQIKSALGNASTVICTIGASEKEIFDITGPYRIDYMATKNLVDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTAPLTPAEKLLAKIPSQRPYIPSPKVQEPDTAAVSNPAPSANVTEAPQKETEQPEPVAEVPSITPQKETEQPKPVAKQPLSPYTAYDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPEIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPKTSSVGSVPNIDAVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDEQDLHEPKSRPLSPFAMYEDLKPPASPSPSFRKS*