Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910010 | XP_024641980.1 | 91.837 | 294 | 22 | 1 | 1 | 292 | 1 | 294 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910010 | sp|Q9LW20|SKL1_ARATH | 53.160 | 269 | 106 | 4 | 24 | 292 | 32 | 280 | 4.23e-89 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043680 | Msa0910010 | 0.800407 | 1.462189e-48 | -8.615850e-47 |
| Msa0056130 | Msa0910010 | 0.803301 | 3.720656e-49 | -8.615850e-47 |
| Msa0064550 | Msa0910010 | 0.806479 | 8.064046e-50 | -8.615850e-47 |
| Msa0068410 | Msa0910010 | 0.811856 | 5.677728e-51 | -8.615850e-47 |
| Msa0084630 | Msa0910010 | 0.805275 | 1.444331e-49 | -8.615850e-47 |
| Msa0084680 | Msa0910010 | 0.802168 | 6.374761e-49 | -8.615850e-47 |
| Msa0092660 | Msa0910010 | 0.807447 | 5.032630e-50 | -8.615850e-47 |
| Msa0092680 | Msa0910010 | 0.804318 | 2.288403e-49 | -8.615850e-47 |
| Msa0092730 | Msa0910010 | 0.807174 | 5.750723e-50 | -8.615850e-47 |
| Msa0605250 | Msa0910010 | 0.813034 | 3.139194e-51 | -8.615850e-47 |
| Msa0605620 | Msa0910010 | 0.802366 | 5.804437e-49 | -8.615850e-47 |
| Msa0607280 | Msa0910010 | 0.819700 | 1.012030e-52 | -8.615850e-47 |
| Msa0609790 | Msa0910010 | 0.808721 | 2.695165e-50 | -8.615850e-47 |
| Msa0623270 | Msa0910010 | 0.802879 | 4.550019e-49 | -8.615850e-47 |
| Msa0628060 | Msa0910010 | 0.800030 | 1.744584e-48 | -8.615850e-47 |
| Msa0636720 | Msa0910010 | 0.806539 | 7.830699e-50 | -8.615850e-47 |
| Msa0646190 | Msa0910010 | 0.806331 | 8.664970e-50 | -8.615850e-47 |
| Msa0649310 | Msa0910010 | 0.901267 | 3.184460e-78 | -8.615850e-47 |
| Msa0660820 | Msa0910010 | 0.803176 | 3.950060e-49 | -8.615850e-47 |
| Msa0667970 | Msa0910010 | 0.817996 | 2.468047e-52 | -8.615850e-47 |
| Msa0682400 | Msa0910010 | 0.813010 | 3.177511e-51 | -8.615850e-47 |
| Msa0690350 | Msa0910010 | 0.806406 | 8.353098e-50 | -8.615850e-47 |
| Msa0729550 | Msa0910010 | 0.821692 | 3.527890e-53 | -8.615850e-47 |
| Msa0780140 | Msa0910010 | 0.801851 | 7.408816e-49 | -8.615850e-47 |
| Msa0806720 | Msa0910010 | 0.810025 | 1.415088e-50 | -8.615850e-47 |
| Msa0806760 | Msa0910010 | 0.804756 | 1.854419e-49 | -8.615850e-47 |
| Msa0130800 | Msa0910010 | 0.810156 | 1.325697e-50 | -8.615850e-47 |
| Msa0135980 | Msa0910010 | 0.801263 | 9.778736e-49 | -8.615850e-47 |
| Msa0137600 | Msa0910010 | 0.801491 | 8.781812e-49 | -8.615850e-47 |
| Msa0140290 | Msa0910010 | 0.847018 | 1.507304e-59 | -8.615850e-47 |
| Msa0150210 | Msa0910010 | 0.809225 | 2.102081e-50 | -8.615850e-47 |
| Msa0155610 | Msa0910010 | 0.808302 | 3.310991e-50 | -8.615850e-47 |
| Msa0163970 | Msa0910010 | -0.802421 | 5.655373e-49 | -8.615850e-47 |
| Msa0171920 | Msa0910010 | 0.800870 | 1.176333e-48 | -8.615850e-47 |
| Msa0175530 | Msa0910010 | 0.800229 | 1.589582e-48 | -8.615850e-47 |
| Msa0178940 | Msa0910010 | 0.807300 | 5.407926e-50 | -8.615850e-47 |
| Msa0181020 | Msa0910010 | 0.804425 | 2.173254e-49 | -8.615850e-47 |
| Msa0223280 | Msa0910010 | 0.801148 | 1.032127e-48 | -8.615850e-47 |
| Msa0373130 | Msa0910010 | 0.803410 | 3.532262e-49 | -8.615850e-47 |
| Msa0373220 | Msa0910010 | 0.837800 | 4.197201e-57 | -8.615850e-47 |
| Msa0380650 | Msa0910010 | 0.842442 | 2.579206e-58 | -8.615850e-47 |
| Msa0382500 | Msa0910010 | 0.804453 | 2.145119e-49 | -8.615850e-47 |
| Msa0387790 | Msa0910010 | 0.813499 | 2.482122e-51 | -8.615850e-47 |
| Msa0392050 | Msa0910010 | 0.813080 | 3.067786e-51 | -8.615850e-47 |
| Msa0401340 | Msa0910010 | 0.846486 | 2.107383e-59 | -8.615850e-47 |
| Msa0421720 | Msa0910010 | 0.832244 | 1.055881e-55 | -8.615850e-47 |
| Msa0430290 | Msa0910010 | 0.840209 | 9.982453e-58 | -8.615850e-47 |
| Msa0432680 | Msa0910010 | 0.806482 | 8.051247e-50 | -8.615850e-47 |
| Msa0432720 | Msa0910010 | 0.804555 | 2.041961e-49 | -8.615850e-47 |
| Msa0440310 | Msa0910010 | 0.806058 | 9.890264e-50 | -8.615850e-47 |
| Msa0448120 | Msa0910010 | 0.813673 | 2.271992e-51 | -8.615850e-47 |
| Msa0467080 | Msa0910010 | 0.820557 | 6.440909e-53 | -8.615850e-47 |
| Msa0467800 | Msa0910010 | 0.809013 | 2.333425e-50 | -8.615850e-47 |
| Msa0467880 | Msa0910010 | 0.804996 | 1.652207e-49 | -8.615850e-47 |
| Msa0468020 | Msa0910010 | 0.839673 | 1.376716e-57 | -8.615850e-47 |
| Msa0469950 | Msa0910010 | 0.813816 | 2.113068e-51 | -8.615850e-47 |
| Msa0242290 | Msa0910010 | 0.823138 | 1.627883e-53 | -8.615850e-47 |
| Msa0259980 | Msa0910010 | 0.800539 | 1.374376e-48 | -8.615850e-47 |
| Msa0265580 | Msa0910010 | 0.823606 | 1.265008e-53 | -8.615850e-47 |
| Msa0296000 | Msa0910010 | 0.800233 | 1.586506e-48 | -8.615850e-47 |
| Msa0296610 | Msa0910010 | 0.800259 | 1.567704e-48 | -8.615850e-47 |
| Msa0303440 | Msa0910010 | 0.817847 | 2.666810e-52 | -8.615850e-47 |
| Msa0319720 | Msa0910010 | 0.807060 | 6.078853e-50 | -8.615850e-47 |
| Msa0321230 | Msa0910010 | 0.800981 | 1.116530e-48 | -8.615850e-47 |
| Msa0323990 | Msa0910010 | 0.801932 | 7.128563e-49 | -8.615850e-47 |
| Msa0334020 | Msa0910010 | 0.802150 | 6.430572e-49 | -8.615850e-47 |
| Msa0334980 | Msa0910010 | 0.805763 | 1.140669e-49 | -8.615850e-47 |
| Msa0344680 | Msa0910010 | 0.814053 | 1.874099e-51 | -8.615850e-47 |
| Msa0346790 | Msa0910010 | 0.811748 | 5.993280e-51 | -8.615850e-47 |
| Msa0350910 | Msa0910010 | 0.804952 | 1.687231e-49 | -8.615850e-47 |
| Msa0354390 | Msa0910010 | 0.833445 | 5.312726e-56 | -8.615850e-47 |
| Msa0482960 | Msa0910010 | 0.821526 | 3.852165e-53 | -8.615850e-47 |
| Msa0512310 | Msa0910010 | 0.818459 | 1.938732e-52 | -8.615850e-47 |
| Msa0525270 | Msa0910010 | 0.810719 | 1.002276e-50 | -8.615850e-47 |
| Msa0525280 | Msa0910010 | 0.803654 | 3.145112e-49 | -8.615850e-47 |
| Msa0530340 | Msa0910010 | 0.810060 | 1.390313e-50 | -8.615850e-47 |
| Msa0542010 | Msa0910010 | 0.807629 | 4.603544e-50 | -8.615850e-47 |
| Msa0545230 | Msa0910010 | 0.800766 | 1.235799e-48 | -8.615850e-47 |
| Msa0550110 | Msa0910010 | 0.808742 | 2.666693e-50 | -8.615850e-47 |
| Msa0567290 | Msa0910010 | 0.807866 | 4.099530e-50 | -8.615850e-47 |
| Msa0587900 | Msa0910010 | 0.803630 | 3.180491e-49 | -8.615850e-47 |
| Msa0865280 | Msa0910010 | 0.826636 | 2.433393e-54 | -8.615850e-47 |
| Msa0899700 | Msa0910010 | 0.801009 | 1.101846e-48 | -8.615850e-47 |
| Msa0910010 | Msa0944690 | 0.824163 | 9.367524e-54 | -8.615850e-47 |
| Msa0910010 | Msa0966410 | 0.801043 | 1.084488e-48 | -8.615850e-47 |
| Msa0910010 | Msa0968780 | 0.811895 | 5.567930e-51 | -8.615850e-47 |
| Msa0910010 | Msa1030870 | 0.852138 | 5.619833e-61 | -8.615850e-47 |
| Msa0910010 | Msa1046700 | -0.811895 | 5.567930e-51 | -8.615850e-47 |
| Msa0910010 | Msa1055360 | 0.802825 | 4.667124e-49 | -8.615850e-47 |
| Msa0910010 | Msa1058010 | 0.808278 | 3.349408e-50 | -8.615850e-47 |
| Msa0910010 | Msa1063920 | 0.805083 | 1.584022e-49 | -8.615850e-47 |
| Msa0910010 | Msa1079480 | 0.819477 | 1.138079e-52 | -8.615850e-47 |
| Msa0910010 | Msa1080620 | 0.824206 | 9.153274e-54 | -8.615850e-47 |
| Msa0910010 | Msa1080690 | 0.815215 | 1.036317e-51 | -8.615850e-47 |
| Msa0910010 | Msa1102540 | 0.831957 | 1.243099e-55 | -8.615850e-47 |
| Msa0910010 | Msa1108140 | 0.809994 | 1.436747e-50 | -8.615850e-47 |
| Msa0910010 | Msa1117690 | 0.803002 | 4.291264e-49 | -8.615850e-47 |
| Msa0910010 | Msa1126310 | 0.825972 | 3.501962e-54 | -8.615850e-47 |
| Msa0910010 | Msa1130660 | 0.831577 | 1.542309e-55 | -8.615850e-47 |
| Msa0910010 | Msa1132820 | 0.813965 | 1.959883e-51 | -8.615850e-47 |
| Msa0910010 | Msa1144730 | 0.812028 | 5.208231e-51 | -8.615850e-47 |
| Msa0910010 | Msa1144950 | 0.809127 | 2.206076e-50 | -8.615850e-47 |
| Msa0910010 | Msa1165810 | 0.823688 | 1.210402e-53 | -8.615850e-47 |
| Msa0910010 | Msa1167160 | 0.832745 | 7.932199e-56 | -8.615850e-47 |
| Msa0910010 | Msa1173380 | 0.817166 | 3.797028e-52 | -8.615850e-47 |
| Msa0910010 | Msa1183730 | 0.800548 | 1.368958e-48 | -8.615850e-47 |
| Msa0910010 | Msa1229640 | 0.813119 | 3.007304e-51 | -8.615850e-47 |
| Msa0910010 | Msa1263590 | 0.825592 | 4.310694e-54 | -8.615850e-47 |
| Msa0910010 | Msa1263670 | 0.826738 | 2.300878e-54 | -8.615850e-47 |
| Msa0910010 | Msa1272340 | 0.804760 | 1.850840e-49 | -8.615850e-47 |
| Msa0910010 | Msa1293290 | 0.827415 | 1.584452e-54 | -8.615850e-47 |
| Msa0910010 | Msa1299160 | 0.801247 | 9.854231e-49 | -8.615850e-47 |
| Msa0910010 | Msa1310250 | 0.803313 | 3.699813e-49 | -8.615850e-47 |
| Msa0910010 | Msa1376350 | 0.826276 | 2.965140e-54 | -8.615850e-47 |
| Msa0910010 | Msa1394900 | 0.826059 | 3.339808e-54 | -8.615850e-47 |
| Msa0910010 | Msa1405770 | 0.800961 | 1.127066e-48 | -8.615850e-47 |
| Msa0910010 | Msa1418200 | 0.814229 | 1.713415e-51 | -8.615850e-47 |
| Msa0910010 | Msa1422500 | 0.808446 | 3.084512e-50 | -8.615850e-47 |
| Msa0910010 | Msa1423190 | 0.817070 | 3.989441e-52 | -8.615850e-47 |
| Msa0910010 | Msa1434660 | 0.803233 | 3.844418e-49 | -8.615850e-47 |
| Msa0910010 | Msa1458920 | 0.802871 | 4.567770e-49 | -8.615850e-47 |
| Msa0910010 | Msa1462600 | 0.813178 | 2.919463e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910010 | MtrunA17_Chr6g0462401 | 91.837 | 294 | 22 | 1 | 1 | 292 | 1 | 294 | 0.0 | 533 |
| Msa0910010 | MtrunA17_Chr8g0383021 | 32.850 | 207 | 138 | 1 | 77 | 282 | 74 | 280 | 6.62e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910010 | AT3G26900.3 | 53.160 | 269 | 106 | 4 | 24 | 292 | 32 | 280 | 4.30e-90 | 270 |
| Msa0910010 | AT3G26900.1 | 53.160 | 269 | 106 | 4 | 24 | 292 | 32 | 280 | 4.30e-90 | 270 |
| Msa0910010 | AT3G26900.2 | 53.160 | 269 | 106 | 4 | 24 | 292 | 32 | 280 | 4.30e-90 | 270 |
| Msa0910010 | AT2G21940.2 | 35.859 | 198 | 126 | 1 | 79 | 275 | 89 | 286 | 5.21e-40 | 141 |
| Msa0910010 | AT2G21940.5 | 35.859 | 198 | 126 | 1 | 79 | 275 | 89 | 286 | 5.21e-40 | 141 |
| Msa0910010 | AT2G21940.1 | 35.859 | 198 | 126 | 1 | 79 | 275 | 89 | 286 | 5.21e-40 | 141 |
| Msa0910010 | AT2G21940.4 | 35.859 | 198 | 126 | 1 | 79 | 275 | 90 | 287 | 5.34e-40 | 141 |
| Msa0910010 | AT4G39540.2 | 36.318 | 201 | 125 | 3 | 79 | 276 | 85 | 285 | 5.55e-38 | 136 |
| Msa0910010 | AT4G39540.1 | 36.318 | 201 | 125 | 3 | 79 | 276 | 85 | 285 | 5.55e-38 | 136 |
| Msa0910010 | AT4G39540.3 | 34.375 | 224 | 133 | 5 | 79 | 291 | 85 | 305 | 4.94e-35 | 129 |
| Msa0910010 | AT2G21940.7 | 36.310 | 168 | 106 | 1 | 79 | 245 | 89 | 256 | 2.67e-31 | 118 |
| Msa0910010 | AT2G21940.3 | 36.310 | 168 | 106 | 1 | 79 | 245 | 89 | 256 | 2.67e-31 | 118 |
| Msa0910010 | AT2G21940.6 | 36.310 | 168 | 106 | 1 | 79 | 245 | 89 | 256 | 2.67e-31 | 118 |
Find 78 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATCCATAATAAAATTT+TGG | 0.230489 | 6_2:-13358719 | None:intergenic |
| TACTTTATTCAGCGATAATT+TGG | 0.269305 | 6_2:-13356800 | Msa0910010:intron |
| ATTTGCCGGGTTGATTAAAA+TGG | 0.319793 | 6_2:+13355045 | None:intergenic |
| GACTATGTGTATGTATAAAA+TGG | 0.346202 | 6_2:+13353638 | None:intergenic |
| TCATTTGAGATATCTGCTTC+AGG | 0.356204 | 6_2:-13355687 | Msa0910010:CDS |
| AAGCTCTCTTAAAACCAATC+TGG | 0.360862 | 6_2:-13356948 | Msa0910010:CDS |
| AATTTGAATGGAACAGAGAT+TGG | 0.369034 | 6_2:+13358484 | None:intergenic |
| ATGGCCCAGGTTGGATAAAA+TGG | 0.372854 | 6_2:+13353790 | None:intergenic |
| TTCGTAACTGAAGTATTTGC+CGG | 0.390215 | 6_2:+13355031 | None:intergenic |
| CCATTTAGCTTCAGTGACTA+AGG | 0.393197 | 6_2:-13357289 | Msa0910010:intron |
| TTGGTAGTTTGTTATTTCAA+TGG | 0.404549 | 6_2:-13358620 | Msa0910010:exon |
| AGCAGTCGACTTGTTCTTCC+CGG | 0.406314 | 6_2:-13358559 | Msa0910010:CDS |
| CTGAAATTCATGACAGGTAA+TGG | 0.407782 | 6_2:+13353763 | None:intergenic |
| CAAATATCTGTATGAGAGAT+AGG | 0.408192 | 6_2:-13358680 | Msa0910010:five_prime_UTR |
| TGTCTCATCACTCTCTTTGA+AGG | 0.409497 | 6_2:+13356741 | None:intergenic |
| CTTCTGCTGCGGAATTTGAA+TGG | 0.421872 | 6_2:+13358472 | None:intergenic |
| TGCCATCATCTTCTTTACTC+TGG | 0.422125 | 6_2:+13355080 | None:intergenic |
| GGATTTATCTCTTGCGGTGA+AGG | 0.424634 | 6_2:-13357256 | Msa0910010:intron |
| TGAGACATGGGATTACATTC+TGG | 0.435684 | 6_2:-13355770 | Msa0910010:CDS |
| AGGAAATTGACTCTGGTTCT+CGG | 0.439253 | 6_2:+13355710 | None:intergenic |
| CTTTCTTCAAATCACTTATC+CGG | 0.440456 | 6_2:+13358655 | None:intergenic |
| TACATATACATACATGGAAC+AGG | 0.444402 | 6_2:+13358418 | None:intergenic |
| TACAACAGAAGACATGGCTT+TGG | 0.447101 | 6_2:-13355349 | Msa0910010:CDS |
| TTTATTCGAATAATGATACT+AGG | 0.448003 | 6_2:-13353709 | Msa0910010:three_prime_UTR |
| GCCTTTAGAGACTGTGGCTA+GGG | 0.453980 | 6_2:-13355739 | Msa0910010:CDS |
| AACAGAAGACATGGCTTTGG+AGG | 0.456859 | 6_2:-13355346 | Msa0910010:intron |
| ACAGAAGTAGCTTCTCAGTT+GGG | 0.457274 | 6_2:-13355393 | Msa0910010:intron |
| ATGAAGAAGATGAAGATTGA+AGG | 0.457712 | 6_2:+13358524 | None:intergenic |
| ATGGAGGACCCTTTCAGCTC+AGG | 0.458494 | 6_2:+13357072 | None:intergenic |
| ATTTGAATGGAACAGAGATT+GGG | 0.468932 | 6_2:+13358485 | None:intergenic |
| AGCTCTCTTAAAACCAATCT+GGG | 0.470849 | 6_2:-13356947 | Msa0910010:CDS |
| CAGAGATTGGGAATGGAAAG+TGG | 0.482060 | 6_2:+13358497 | None:intergenic |
| TTAGTAGTTTGTGCTGGAAA+TGG | 0.482861 | 6_2:-13356163 | Msa0910010:CDS |
| ACTTAAGCAATTGTCATCCA+TGG | 0.483429 | 6_2:-13356191 | Msa0910010:CDS |
| AAGAAAGAAGTGGGAACAGT+TGG | 0.487536 | 6_2:-13358639 | Msa0910010:five_prime_UTR |
| AATGGAACAGAGATTGGGAA+TGG | 0.495166 | 6_2:+13358490 | None:intergenic |
| TGAAGAAGATGAAGATTGAA+GGG | 0.498572 | 6_2:+13358525 | None:intergenic |
| TTGAAGGGATGAACAACTGC+CGG | 0.499354 | 6_2:+13358540 | None:intergenic |
| CAAATGAAGGAAATTGACTC+TGG | 0.500785 | 6_2:+13355703 | None:intergenic |
| ATGTATCCCCTGAGCTGAAA+GGG | 0.504370 | 6_2:-13357080 | Msa0910010:CDS |
| TACAGAAGTAGCTTCTCAGT+TGG | 0.505172 | 6_2:-13355394 | Msa0910010:intron |
| AACCAATCTGGGAAAACTGC+TGG | 0.515195 | 6_2:-13356936 | Msa0910010:CDS |
| GAAGCAGATATCTCAAATGA+AGG | 0.516865 | 6_2:+13355690 | None:intergenic |
| AGAATGTAATCCCATGTCTC+AGG | 0.517694 | 6_2:+13355772 | None:intergenic |
| TCCCTAGCCACAGTCTCTAA+AGG | 0.519416 | 6_2:+13355738 | None:intergenic |
| AGAATTCTGAAATTCATGAC+AGG | 0.524852 | 6_2:+13353757 | None:intergenic |
| TGGAGGACCCTTTCAGCTCA+GGG | 0.534925 | 6_2:+13357073 | None:intergenic |
| GGTCGATTAGTAGTTTGTGC+TGG | 0.536252 | 6_2:-13356169 | Msa0910010:CDS |
| GTTTGTTATTTCAATGGAGA+AGG | 0.537224 | 6_2:-13358614 | Msa0910010:exon |
| TATAGGGCGCTCCTGAGACA+TGG | 0.543459 | 6_2:-13355783 | Msa0910010:intron |
| TGAAGGGATGAACAACTGCC+GGG | 0.547199 | 6_2:+13358541 | None:intergenic |
| TCGTAACTGAAGTATTTGCC+GGG | 0.549036 | 6_2:+13355032 | None:intergenic |
| AGGTAATGGAAGCATGGCCC+AGG | 0.549744 | 6_2:+13353777 | None:intergenic |
| ATAGGGCGCTCCTGAGACAT+GGG | 0.554008 | 6_2:-13355782 | Msa0910010:intron |
| AGTGATTTGAAGAAAGAAGT+GGG | 0.567034 | 6_2:-13358648 | Msa0910010:five_prime_UTR |
| GATGTATCCCCTGAGCTGAA+AGG | 0.568538 | 6_2:-13357081 | Msa0910010:CDS |
| CGACATTACAACAGAAGACA+TGG | 0.570058 | 6_2:-13355355 | Msa0910010:CDS |
| AGATTTGCCTTTAGAGACTG+TGG | 0.571455 | 6_2:-13355745 | Msa0910010:CDS |
| TGCCTTTAGAGACTGTGGCT+AGG | 0.575369 | 6_2:-13355740 | Msa0910010:CDS |
| TCTGTATGAGAGATAGGTAC+CGG | 0.577672 | 6_2:-13358674 | Msa0910010:five_prime_UTR |
| AATGGAAGCATGGCCCAGGT+TGG | 0.586297 | 6_2:+13353781 | None:intergenic |
| GACCAGAGTAAAGAAGATGA+TGG | 0.587138 | 6_2:-13355082 | Msa0910010:CDS |
| CTTAAGCAATTGTCATCCAT+GGG | 0.588790 | 6_2:-13356190 | Msa0910010:CDS |
| TTCAAAGAGAGTGATGAGAC+AGG | 0.590608 | 6_2:-13356739 | Msa0910010:CDS |
| TGCGACGGATTTATCTCTTG+CGG | 0.591366 | 6_2:-13357262 | Msa0910010:CDS |
| AGTGACTAAGGTTTCTGCGA+CGG | 0.594871 | 6_2:-13357277 | Msa0910010:CDS |
| AAGTGATTTGAAGAAAGAAG+TGG | 0.596136 | 6_2:-13358649 | Msa0910010:five_prime_UTR |
| CATGACAGGTAATGGAAGCA+TGG | 0.608736 | 6_2:+13353771 | None:intergenic |
| AATTTGGTAGAAGAAGCTAT+AGG | 0.609571 | 6_2:-13356784 | Msa0910010:CDS |
| CTATACAATAAGTACAAAGA+CGG | 0.623906 | 6_2:-13355536 | Msa0910010:CDS |
| CATTAGGTAATGGATGAACT+CGG | 0.628657 | 6_2:-13355563 | Msa0910010:intron |
| GACAGGCTTCTATGACTCTG+AGG | 0.662695 | 6_2:-13356722 | Msa0910010:intron |
| AGTTAGTTGATCTTCTGCTG+CGG | 0.664542 | 6_2:+13358461 | None:intergenic |
| TTGGTAGAAGAAGCTATAGG+TGG | 0.684928 | 6_2:-13356781 | Msa0910010:CDS |
| GACAAGATTAAAGACGACGA+TGG | 0.686801 | 6_2:-13353828 | Msa0910010:three_prime_UTR |
| ACAAACTACTAATCGACCCA+TGG | 0.691791 | 6_2:+13356174 | None:intergenic |
| GGAGGACCCTTTCAGCTCAG+GGG | 0.693258 | 6_2:+13357074 | None:intergenic |
| TGCTTCAGGATCTTACCCAG+AGG | 0.702926 | 6_2:-13355673 | Msa0910010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATTAATATAAAA+AGG | - | chr6_2:13354383-13354402 | Msa0910010:intron | 0.0% |
| !!! | TTTTTTAATTAATATAAAAA+GGG | - | chr6_2:13354384-13354403 | Msa0910010:intron | 0.0% |
| !!! | TAAAATTTTGTCAAATTTTT+CGG | - | chr6_2:13357123-13357142 | Msa0910010:intron | 10.0% |
| !! | ATAATTCATATTTGATGTTA+CGG | - | chr6_2:13353957-13353976 | Msa0910010:intron | 15.0% |
| !!! | TTTACTGAATTTAAGATATT+CGG | - | chr6_2:13354056-13354075 | Msa0910010:intron | 15.0% |
| !! | TAATAAATATCAACAATTGA+TGG | + | chr6_2:13354902-13354921 | None:intergenic | 15.0% |
| !! | TAAACATAAGTAATAACATA+TGG | + | chr6_2:13356056-13356075 | None:intergenic | 15.0% |
| !!! | TACAATTTTTCACTAATTTT+AGG | - | chr6_2:13357166-13357185 | Msa0910010:intron | 15.0% |
| !!! | TACAGTTTTAACTTTTAAAA+TGG | + | chr6_2:13357670-13357689 | None:intergenic | 15.0% |
| !! | TAAAACTGTAATAAGTTAAT+TGG | - | chr6_2:13357680-13357699 | Msa0910010:intron | 15.0% |
| !! | ATATAAAAAGGGTAAAATTG+AGG | - | chr6_2:13354395-13354414 | Msa0910010:intron | 20.0% |
| !!! | ATAGTTTAGTTTAACTTACT+TGG | + | chr6_2:13354759-13354778 | None:intergenic | 20.0% |
| !! | TAAACAATACTATCATTTGT+TGG | - | chr6_2:13354813-13354832 | Msa0910010:intron | 20.0% |
| !! | ATTCTTACCAATCAAAAATA+TGG | + | chr6_2:13355243-13355262 | None:intergenic | 20.0% |
| !! | TATCAAGTTTAGCTAAAAAT+TGG | + | chr6_2:13355466-13355485 | None:intergenic | 20.0% |
| !! | AATAAGCTTAAAATAGCTAA+TGG | + | chr6_2:13355721-13355740 | None:intergenic | 20.0% |
| !! | AAATCAGTTACTTAAGAATA+GGG | + | chr6_2:13355945-13355964 | None:intergenic | 20.0% |
| !!! | GTCTTTTATTACTAATCTTA+TGG | + | chr6_2:13356361-13356380 | None:intergenic | 20.0% |
| !!! | TAAAGAGTAAATCATCATTT+TGG | + | chr6_2:13356455-13356474 | None:intergenic | 20.0% |
| !! | AATTAACAGAAATTAACAGT+AGG | + | chr6_2:13356708-13356727 | None:intergenic | 20.0% |
| !! | AATTTCTGTTAATTGACATT+AGG | - | chr6_2:13356714-13356733 | Msa0910010:intron | 20.0% |
| !!! | TTACGAAGTTTTTTCATATT+AGG | - | chr6_2:13357017-13357036 | Msa0910010:intron | 20.0% |
| !!! | TACATTCAATCTTGTTTATT+TGG | - | chr6_2:13357326-13357345 | Msa0910010:intron | 20.0% |
| !! | ATAGGATAAAGAAAATGAAT+GGG | + | chr6_2:13357382-13357401 | None:intergenic | 20.0% |
| !!! | TGATTAAAATGGATTATATG+TGG | + | chr6_2:13357469-13357488 | None:intergenic | 20.0% |
| !!! | CCTAATTATAAGAGATTTTT+CGG | - | chr6_2:13357565-13357584 | Msa0910010:intron | 20.0% |
| !! | AGAAAATCGAAAACAATATA+GGG | + | chr6_2:13357873-13357892 | None:intergenic | 20.0% |
| !! | AAGAAAATCGAAAACAATAT+AGG | + | chr6_2:13357874-13357893 | None:intergenic | 20.0% |
| !! | AGAAAATTTAAACACAAAGT+TGG | + | chr6_2:13358058-13358077 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCTATCTTTGCT+AGG | - | chr6_2:13358067-13358086 | Msa0910010:intron | 20.0% |
| !!! | CAATTTCCATCAATTTTTTT+AGG | - | chr6_2:13358418-13358437 | Msa0910010:intron | 20.0% |
| !! | TTTATTCGAATAATGATACT+AGG | - | chr6_2:13358584-13358603 | Msa0910010:CDS | 20.0% |
| !! | CAGAGACCAAAATTTTATTA+TGG | + | chr6_2:13353583-13353602 | None:intergenic | 25.0% |
| !!! | TTGGTAGTTTGTTATTTCAA+TGG | - | chr6_2:13353673-13353692 | Msa0910010:three_prime_UTR | 25.0% |
| !! | GTAGTTGGCAATAATAATTT+TGG | - | chr6_2:13354020-13354039 | Msa0910010:intron | 25.0% |
| ! | TCAACCATAAACTCAAAATT+TGG | - | chr6_2:13354531-13354550 | Msa0910010:intron | 25.0% |
| ! | ACTCTATATAGTAACTCTAA+GGG | + | chr6_2:13354709-13354728 | None:intergenic | 25.0% |
| ! | AACTCTATATAGTAACTCTA+AGG | + | chr6_2:13354710-13354729 | None:intergenic | 25.0% |
| !! | TTTAACTTACTTGGTCTAAA+GGG | + | chr6_2:13354750-13354769 | None:intergenic | 25.0% |
| !! | TTGGTATTTCAATTTGTTCA+TGG | - | chr6_2:13354832-13354851 | Msa0910010:intron | 25.0% |
| ! | TCTATTTACATTTAGATGGT+AGG | + | chr6_2:13354926-13354945 | None:intergenic | 25.0% |
| ! | TTCTACATTATCACTTCAAA+AGG | + | chr6_2:13354960-13354979 | None:intergenic | 25.0% |
| ! | ATACCTTGATCAAATAAATC+AGG | + | chr6_2:13355322-13355341 | None:intergenic | 25.0% |
| !!! | TGCGATATTATTATTTTGAC+AGG | - | chr6_2:13355389-13355408 | Msa0910010:CDS | 25.0% |
| ! | TACTTTATTCAGCGATAATT+TGG | - | chr6_2:13355493-13355512 | Msa0910010:intron | 25.0% |
| ! | ATTAAGTCGTTTATCCAAAT+AGG | - | chr6_2:13355858-13355877 | Msa0910010:intron | 25.0% |
| ! | TTAAGTCGTTTATCCAAATA+GGG | - | chr6_2:13355859-13355878 | Msa0910010:intron | 25.0% |
| ! | GAAATCAGTTACTTAAGAAT+AGG | + | chr6_2:13355946-13355965 | None:intergenic | 25.0% |
| !! | TTGTAATTTTGTCACATTCA+AGG | + | chr6_2:13356241-13356260 | None:intergenic | 25.0% |
| ! | TGTTAATTGACATTAGGTAA+TGG | - | chr6_2:13356720-13356739 | Msa0910010:intron | 25.0% |
| ! | CTATACAATAAGTACAAAGA+CGG | - | chr6_2:13356757-13356776 | Msa0910010:CDS | 25.0% |
| !! | TTCAAAGTATACAACTTTTC+CGG | - | chr6_2:13356809-13356828 | Msa0910010:intron | 25.0% |
| ! | AAAAAAAATGTAAAACAGCC+CGG | + | chr6_2:13356831-13356850 | None:intergenic | 25.0% |
| !!! | AAAAAAAAAAAAGCACTGTG+AGG | + | chr6_2:13356872-13356891 | None:intergenic | 25.0% |
| !!! | TCATTTTTGCTATAATGACT+TGG | - | chr6_2:13357057-13357076 | Msa0910010:intron | 25.0% |
| !!! | TTCACTAATTTTAGGTTCTT+CGG | - | chr6_2:13357174-13357193 | Msa0910010:intron | 25.0% |
| ! | TAGGATAAAGAAAATGAATG+GGG | + | chr6_2:13357381-13357400 | None:intergenic | 25.0% |
| ! | GATAGGATAAAGAAAATGAA+TGG | + | chr6_2:13357383-13357402 | None:intergenic | 25.0% |
| !!! | AATCCATTTTAATCAACCAT+TGG | - | chr6_2:13357474-13357493 | Msa0910010:intron | 25.0% |
| ! | CCGAAAAATCTCTTATAATT+AGG | + | chr6_2:13357568-13357587 | None:intergenic | 25.0% |
| ! | GTTGCAAATTAACAAAGATA+AGG | + | chr6_2:13357794-13357813 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTTTAGGCTCTT+GGG | - | chr6_2:13358426-13358445 | Msa0910010:intron | 25.0% |
| ! | GACTATGTGTATGTATAAAA+TGG | + | chr6_2:13358658-13358677 | None:intergenic | 25.0% |
| CAAATATCTGTATGAGAGAT+AGG | - | chr6_2:13353613-13353632 | Msa0910010:three_prime_UTR | 30.0% | |
| CTTTCTTCAAATCACTTATC+CGG | + | chr6_2:13353641-13353660 | None:intergenic | 30.0% | |
| AAGTGATTTGAAGAAAGAAG+TGG | - | chr6_2:13353644-13353663 | Msa0910010:three_prime_UTR | 30.0% | |
| AGTGATTTGAAGAAAGAAGT+GGG | - | chr6_2:13353645-13353664 | Msa0910010:three_prime_UTR | 30.0% | |
| !! | GTTTGTTATTTCAATGGAGA+AGG | - | chr6_2:13353679-13353698 | Msa0910010:three_prime_UTR | 30.0% |
| TGAAGAAGATGAAGATTGAA+GGG | + | chr6_2:13353771-13353790 | None:intergenic | 30.0% | |
| ATGAAGAAGATGAAGATTGA+AGG | + | chr6_2:13353772-13353791 | None:intergenic | 30.0% | |
| ATTTGAATGGAACAGAGATT+GGG | + | chr6_2:13353811-13353830 | None:intergenic | 30.0% | |
| AATTTGAATGGAACAGAGAT+TGG | + | chr6_2:13353812-13353831 | None:intergenic | 30.0% | |
| TACATATACATACATGGAAC+AGG | + | chr6_2:13353878-13353897 | None:intergenic | 30.0% | |
| GAGAGTTACATATACATACA+TGG | + | chr6_2:13353884-13353903 | None:intergenic | 30.0% | |
| GTGTAAATTGATAGAGTAGT+TGG | - | chr6_2:13354005-13354024 | Msa0910010:intron | 30.0% | |
| ACTGCTTCATAGATCATAAT+TGG | + | chr6_2:13354121-13354140 | None:intergenic | 30.0% | |
| ! | GTTACCAAACAAGTCAATTT+TGG | - | chr6_2:13354488-13354507 | Msa0910010:intron | 30.0% |
| !! | ATGACCAAAATTGACTTGTT+TGG | + | chr6_2:13354495-13354514 | None:intergenic | 30.0% |
| !!! | AAGGCCAAATTTTGAGTTTA+TGG | + | chr6_2:13354538-13354557 | None:intergenic | 30.0% |
| CATTAACACAGATCAGAAAT+TGG | - | chr6_2:13354580-13354599 | Msa0910010:intron | 30.0% | |
| CTCTATATAGTAACTCTAAG+GGG | + | chr6_2:13354708-13354727 | None:intergenic | 30.0% | |
| ! | GTTTAACTTACTTGGTCTAA+AGG | + | chr6_2:13354751-13354770 | None:intergenic | 30.0% |
| CTCGTCTATTTACATTTAGA+TGG | + | chr6_2:13354930-13354949 | None:intergenic | 30.0% | |
| TTCACCTCACAATCATAATT+GGG | - | chr6_2:13355077-13355096 | Msa0910010:CDS | 30.0% | |
| TTTCAAAAAGACTGAATCTC+AGG | + | chr6_2:13355143-13355162 | None:intergenic | 30.0% | |
| CTTACCAATCAAAAATATGG+AGG | + | chr6_2:13355240-13355259 | None:intergenic | 30.0% | |
| CTTATAACACACACAATCAA+TGG | - | chr6_2:13355265-13355284 | Msa0910010:intron | 30.0% | |
| CTACCTGATTTATTTGATCA+AGG | - | chr6_2:13355316-13355335 | Msa0910010:intron | 30.0% | |
| ! | CGGTTTCATTTTGGATATAA+TGG | - | chr6_2:13355434-13355453 | Msa0910010:intron | 30.0% |
| AATTTGGTAGAAGAAGCTAT+AGG | - | chr6_2:13355509-13355528 | Msa0910010:CDS | 30.0% | |
| ! | TAATTGTCTTAGACTGACTT+AGG | - | chr6_2:13355598-13355617 | Msa0910010:intron | 30.0% |
| ! | AATTGTCTTAGACTGACTTA+GGG | - | chr6_2:13355599-13355618 | Msa0910010:intron | 30.0% |
| TAAGTAATTGTGAGACTGTT+TGG | - | chr6_2:13355660-13355679 | Msa0910010:intron | 30.0% | |
| AAGTAATTGTGAGACTGTTT+GGG | - | chr6_2:13355661-13355680 | Msa0910010:intron | 30.0% | |
| ! | AACTATCCTTGATAGCTTAT+GGG | + | chr6_2:13355744-13355763 | None:intergenic | 30.0% |
| ! | AAACTATCCTTGATAGCTTA+TGG | + | chr6_2:13355745-13355764 | None:intergenic | 30.0% |
| TTTCATTTGTGCATCAAACA+AGG | - | chr6_2:13355911-13355930 | Msa0910010:intron | 30.0% | |
| GTTCTTCTCACTTAAATTTC+AGG | - | chr6_2:13355988-13356007 | Msa0910010:intron | 30.0% | |
| ! | TAAAGATCAAACCGTCATTT+TGG | - | chr6_2:13356214-13356233 | Msa0910010:intron | 30.0% |
| ACTAAAGAAAGACAAATTCG+AGG | + | chr6_2:13356302-13356321 | None:intergenic | 30.0% | |
| ACATGCTCTTAAACTGTTAT+AGG | - | chr6_2:13356493-13356512 | Msa0910010:intron | 30.0% | |
| CATGCTCTTAAACTGTTATA+GGG | - | chr6_2:13356494-13356513 | Msa0910010:intron | 30.0% | |
| ACAGTAAGAAATTAACCTCT+GGG | + | chr6_2:13356638-13356657 | None:intergenic | 30.0% | |
| AACAGTAAGAAATTAACCTC+TGG | + | chr6_2:13356639-13356658 | None:intergenic | 30.0% | |
| ! | TCAAAGTATACAACTTTTCC+GGG | - | chr6_2:13356810-13356829 | Msa0910010:intron | 30.0% |
| AGCAATTCTTAGCTATGATT+TGG | - | chr6_2:13356986-13357005 | Msa0910010:intron | 30.0% | |
| TAGCAAAAATGATGCTTGTA+TGG | + | chr6_2:13357049-13357068 | None:intergenic | 30.0% | |
| TTGGCATTATTACTAACTCT+TGG | - | chr6_2:13357076-13357095 | Msa0910010:CDS | 30.0% | |
| CATTATTACTAACTCTTGGA+TGG | - | chr6_2:13357080-13357099 | Msa0910010:CDS | 30.0% | |
| !!! | TCACTAATTTTAGGTTCTTC+GGG | - | chr6_2:13357175-13357194 | Msa0910010:intron | 30.0% |
| GTATTTGTGAAGAGAAACTA+AGG | + | chr6_2:13357535-13357554 | None:intergenic | 30.0% | |
| ! | ATATGTCTCGCAATTTTTCA+TGG | - | chr6_2:13357630-13357649 | Msa0910010:intron | 30.0% |
| ! | TATGTCTCGCAATTTTTCAT+GGG | - | chr6_2:13357631-13357650 | Msa0910010:intron | 30.0% |
| ! | CAATTTTTCATGGGTATACT+TGG | - | chr6_2:13357640-13357659 | Msa0910010:intron | 30.0% |
| ! | AAGAATTGGCAGAAGATTTT+AGG | + | chr6_2:13357897-13357916 | None:intergenic | 30.0% |
| AGAAAGGAAAATGGAAGAAT+TGG | + | chr6_2:13357911-13357930 | None:intergenic | 30.0% | |
| CCAAAAACAAACCATAATCA+TGG | + | chr6_2:13357965-13357984 | None:intergenic | 30.0% | |
| !!! | CCATGATTATGGTTTGTTTT+TGG | - | chr6_2:13357962-13357981 | Msa0910010:intron | 30.0% |
| !!! | GTTTTTGGTCCACATTTATT+CGG | - | chr6_2:13357977-13357996 | Msa0910010:intron | 30.0% |
| TGATCAGGAGAAAACTATAA+AGG | + | chr6_2:13358022-13358041 | None:intergenic | 30.0% | |
| GTAAGTCATTAAACAGTTGA+TGG | + | chr6_2:13358310-13358329 | None:intergenic | 30.0% | |
| TTACCATTGTTACTAACTGT+TGG | - | chr6_2:13358326-13358345 | Msa0910010:intron | 30.0% | |
| CAAGAGCCTAAAAAAATTGA+TGG | + | chr6_2:13358427-13358446 | None:intergenic | 30.0% | |
| !!! | CATCAATTTTTTTAGGCTCT+TGG | - | chr6_2:13358425-13358444 | Msa0910010:intron | 30.0% |
| !!! | TCAATTTTTTTAGGCTCTTG+GGG | - | chr6_2:13358427-13358446 | Msa0910010:intron | 30.0% |
| !! | AGAATTCTGAAATTCATGAC+AGG | + | chr6_2:13358539-13358558 | None:intergenic | 30.0% |
| ATTGAGTGTATCATGTGTGT+CGG | - | chr6_2:13354191-13354210 | Msa0910010:intron | 35.0% | |
| !! | GGGCTTTGTTAGGTAAAAAA+TGG | - | chr6_2:13354223-13354242 | Msa0910010:intron | 35.0% |
| GATAAACTAGCTGATACTAG+TGG | - | chr6_2:13354255-13354274 | Msa0910010:intron | 35.0% | |
| GTATGCTCGTGAGAAAAAAT+TGG | - | chr6_2:13354466-13354485 | Msa0910010:intron | 35.0% | |
| ACGTGTAGAATTACGATTGT+TGG | + | chr6_2:13354678-13354697 | None:intergenic | 35.0% | |
| CTTAGTCACTGAAGCTAAAT+GGG | + | chr6_2:13355006-13355025 | None:intergenic | 35.0% | |
| GTTCACCTCACAATCATAAT+TGG | - | chr6_2:13355076-13355095 | Msa0910010:CDS | 35.0% | |
| CAAACCCAATTATGATTGTG+AGG | + | chr6_2:13355084-13355103 | None:intergenic | 35.0% | |
| AAGCTCTCTTAAAACCAATC+TGG | - | chr6_2:13355345-13355364 | Msa0910010:intron | 35.0% | |
| AGCTCTCTTAAAACCAATCT+GGG | - | chr6_2:13355346-13355365 | Msa0910010:intron | 35.0% | |
| TCTGTTCATTCTCTGGTAAA+CGG | - | chr6_2:13355414-13355433 | Msa0910010:intron | 35.0% | |
| ! | TCTGGTAAACGGTTTCATTT+TGG | - | chr6_2:13355425-13355444 | Msa0910010:intron | 35.0% |
| CTTATTCCCATAAGCTATCA+AGG | - | chr6_2:13355735-13355754 | Msa0910010:CDS | 35.0% | |
| CAGTTACTTAAGAATAGGGT+AGG | + | chr6_2:13355941-13355960 | None:intergenic | 35.0% | |
| ACTTAAGCAATTGTCATCCA+TGG | - | chr6_2:13356102-13356121 | Msa0910010:intron | 35.0% | |
| CTTAAGCAATTGTCATCCAT+GGG | - | chr6_2:13356103-13356122 | Msa0910010:intron | 35.0% | |
| ! | TTAGTAGTTTGTGCTGGAAA+TGG | - | chr6_2:13356130-13356149 | Msa0910010:intron | 35.0% |
| ACATTCAAGGACCAAAATGA+CGG | + | chr6_2:13356228-13356247 | None:intergenic | 35.0% | |
| ATGTCTTTCCTTAGTGAGTT+TGG | - | chr6_2:13356275-13356294 | Msa0910010:intron | 35.0% | |
| ! | TTTTGGTCCTTAAATGTGTG+AGG | + | chr6_2:13356438-13356457 | None:intergenic | 35.0% |
| ! | CAAATGAAGGAAATTGACTC+TGG | + | chr6_2:13356593-13356612 | None:intergenic | 35.0% |
| GAAGCAGATATCTCAAATGA+AGG | + | chr6_2:13356606-13356625 | None:intergenic | 35.0% | |
| ! | TCATTTGAGATATCTGCTTC+AGG | - | chr6_2:13356606-13356625 | Msa0910010:intron | 35.0% |
| AGGTTTAGATTTACTGTGGA+AGG | + | chr6_2:13356688-13356707 | None:intergenic | 35.0% | |
| CAGTAGGTTTAGATTTACTG+TGG | + | chr6_2:13356692-13356711 | None:intergenic | 35.0% | |
| !! | CATTAGGTAATGGATGAACT+CGG | - | chr6_2:13356730-13356749 | Msa0910010:CDS | 35.0% |
| !! | CAAGACCATTTTAATCAACC+CGG | - | chr6_2:13357243-13357262 | Msa0910010:intron | 35.0% |
| !! | ATTTGCCGGGTTGATTAAAA+TGG | + | chr6_2:13357251-13357270 | None:intergenic | 35.0% |
| ! | TTCGTAACTGAAGTATTTGC+CGG | + | chr6_2:13357265-13357284 | None:intergenic | 35.0% |
| ! | TGTGTGTCTAAAATACTGAG+AGG | + | chr6_2:13357421-13357440 | None:intergenic | 35.0% |
| TCGCCAATGGTTGATTAAAA+TGG | + | chr6_2:13357480-13357499 | None:intergenic | 35.0% | |
| ! | TTTTAATCAACCATTGGCGA+AGG | - | chr6_2:13357480-13357499 | Msa0910010:intron | 35.0% |
| TTTGTGAAGAGAAACTAAGG+AGG | + | chr6_2:13357532-13357551 | None:intergenic | 35.0% | |
| CTCTTATAATTAGGACCAGA+GGG | + | chr6_2:13357559-13357578 | None:intergenic | 35.0% | |
| TCTCTTATAATTAGGACCAG+AGG | + | chr6_2:13357560-13357579 | None:intergenic | 35.0% | |
| CTTCTTATAATTGAGACCAG+AGG | - | chr6_2:13357725-13357744 | Msa0910010:intron | 35.0% | |
| !! | GAGAAATTTGTTACTACCTC+TGG | + | chr6_2:13357744-13357763 | None:intergenic | 35.0% |
| !! | CGAATAAGTTCAGGTTGAAT+CGG | + | chr6_2:13357942-13357961 | None:intergenic | 35.0% |
| TAATCATGGCGAATAAGTTC+AGG | + | chr6_2:13357951-13357970 | None:intergenic | 35.0% | |
| GAACTTATTCGCCATGATTA+TGG | - | chr6_2:13357951-13357970 | Msa0910010:intron | 35.0% | |
| AACCATTGACCGAATAAATG+TGG | + | chr6_2:13357989-13358008 | None:intergenic | 35.0% | |
| ACATTTATTCGGTCAATGGT+TGG | - | chr6_2:13357988-13358007 | Msa0910010:intron | 35.0% | |
| GGAGAAAACTATAAAGGATC+AGG | + | chr6_2:13358016-13358035 | None:intergenic | 35.0% | |
| ACATGAACGGTAAATCAAGT+TGG | + | chr6_2:13358133-13358152 | None:intergenic | 35.0% | |
| AGCTGGACAATTTACATGAA+CGG | + | chr6_2:13358146-13358165 | None:intergenic | 35.0% | |
| !! | ACAGTTGATGGTTGAAAACA+AGG | + | chr6_2:13358298-13358317 | None:intergenic | 35.0% |
| CATCCAACAGTTAGTAACAA+TGG | + | chr6_2:13358332-13358351 | None:intergenic | 35.0% | |
| CATTGTTACTAACTGTTGGA+TGG | - | chr6_2:13358330-13358349 | Msa0910010:intron | 35.0% | |
| ! | AAAGACCATTTTATCCAACC+TGG | - | chr6_2:13358498-13358517 | Msa0910010:CDS | 35.0% |
| ! | AAGACCATTTTATCCAACCT+GGG | - | chr6_2:13358499-13358518 | Msa0910010:CDS | 35.0% |
| CTGAAATTCATGACAGGTAA+TGG | + | chr6_2:13358533-13358552 | None:intergenic | 35.0% | |
| !! | ATTTTGGTCTCTGTGCTCAT+AGG | - | chr6_2:13353590-13353609 | Msa0910010:three_prime_UTR | 40.0% |
| TCTGTATGAGAGATAGGTAC+CGG | - | chr6_2:13353619-13353638 | Msa0910010:three_prime_UTR | 40.0% | |
| AAGAAAGAAGTGGGAACAGT+TGG | - | chr6_2:13353654-13353673 | Msa0910010:three_prime_UTR | 40.0% | |
| AATGGAACAGAGATTGGGAA+TGG | + | chr6_2:13353806-13353825 | None:intergenic | 40.0% | |
| AGTTAGTTGATCTTCTGCTG+CGG | + | chr6_2:13353835-13353854 | None:intergenic | 40.0% | |
| ! | TATTCGGTGAAATTCGTTGC+TGG | - | chr6_2:13354072-13354091 | Msa0910010:intron | 40.0% |
| ! | ACTAGTGGACAAGTTTATCG+CGG | - | chr6_2:13354270-13354289 | Msa0910010:intron | 40.0% |
| TCTGTGTTAATGCTACACCT+AGG | + | chr6_2:13354572-13354591 | None:intergenic | 40.0% | |
| GTCTAAAGGGATCAAATCTG+TGG | + | chr6_2:13354737-13354756 | None:intergenic | 40.0% | |
| CCTTAGTCACTGAAGCTAAA+TGG | + | chr6_2:13355007-13355026 | None:intergenic | 40.0% | |
| ! | CCATTTAGCTTCAGTGACTA+AGG | - | chr6_2:13355004-13355023 | Msa0910010:intron | 40.0% |
| !! | GGGTCCTCCATATTTTTGAT+TGG | - | chr6_2:13355233-13355252 | Msa0910010:intron | 40.0% |
| CACACACAATCAATGGCTTT+CGG | - | chr6_2:13355272-13355291 | Msa0910010:intron | 40.0% | |
| ACAGGTATCTGTTCATTCTC+TGG | - | chr6_2:13355407-13355426 | Msa0910010:intron | 40.0% | |
| TTGGTAGAAGAAGCTATAGG+TGG | - | chr6_2:13355512-13355531 | Msa0910010:CDS | 40.0% | |
| TGTCTCATCACTCTCTTTGA+AGG | + | chr6_2:13355555-13355574 | None:intergenic | 40.0% | |
| TTCAAAGAGAGTGATGAGAC+AGG | - | chr6_2:13355554-13355573 | Msa0910010:CDS | 40.0% | |
| !! | GTTTGGGTTGCGATAACTTA+TGG | - | chr6_2:13355677-13355696 | Msa0910010:CDS | 40.0% |
| ACATGAAGTGAGACCCTATT+TGG | + | chr6_2:13355875-13355894 | None:intergenic | 40.0% | |
| ACAAACTACTAATCGACCCA+TGG | + | chr6_2:13356122-13356141 | None:intergenic | 40.0% | |
| TAAACTCACGATGACGCATT+TGG | + | chr6_2:13356336-13356355 | None:intergenic | 40.0% | |
| AGAATGTAATCCCATGTCTC+AGG | + | chr6_2:13356524-13356543 | None:intergenic | 40.0% | |
| TGAGACATGGGATTACATTC+TGG | - | chr6_2:13356523-13356542 | Msa0910010:intron | 40.0% | |
| ! | AGATTTGCCTTTAGAGACTG+TGG | - | chr6_2:13356548-13356567 | Msa0910010:intron | 40.0% |
| !! | AGGAAATTGACTCTGGTTCT+CGG | + | chr6_2:13356586-13356605 | None:intergenic | 40.0% |
| TACAGAAGTAGCTTCTCAGT+TGG | - | chr6_2:13356899-13356918 | Msa0910010:intron | 40.0% | |
| ACAGAAGTAGCTTCTCAGTT+GGG | - | chr6_2:13356900-13356919 | Msa0910010:intron | 40.0% | |
| CGACATTACAACAGAAGACA+TGG | - | chr6_2:13356938-13356957 | Msa0910010:CDS | 40.0% | |
| TACAACAGAAGACATGGCTT+TGG | - | chr6_2:13356944-13356963 | Msa0910010:CDS | 40.0% | |
| GACCAGAGTAAAGAAGATGA+TGG | - | chr6_2:13357211-13357230 | Msa0910010:intron | 40.0% | |
| TGCCATCATCTTCTTTACTC+TGG | + | chr6_2:13357216-13357235 | None:intergenic | 40.0% | |
| ! | TCGTAACTGAAGTATTTGCC+GGG | + | chr6_2:13357264-13357283 | None:intergenic | 40.0% |
| !! | TGAGAGGTTGAGTTTGCTAA+GGG | + | chr6_2:13357405-13357424 | None:intergenic | 40.0% |
| AAACTAAGGAGGCTTCAATG+GGG | + | chr6_2:13357521-13357540 | None:intergenic | 40.0% | |
| GAAACTAAGGAGGCTTCAAT+GGG | + | chr6_2:13357522-13357541 | None:intergenic | 40.0% | |
| AGAAACTAAGGAGGCTTCAA+TGG | + | chr6_2:13357523-13357542 | None:intergenic | 40.0% | |
| GAGCAAGAGAACAAGATTCT+GGG | + | chr6_2:13357768-13357787 | None:intergenic | 40.0% | |
| TGAGCAAGAGAACAAGATTC+TGG | + | chr6_2:13357769-13357788 | None:intergenic | 40.0% | |
| !! | TATAGGGTTTGTTGAACCAG+AGG | + | chr6_2:13357857-13357876 | None:intergenic | 40.0% |
| ! | TCTTCCATTTTCCTTTCTGC+TGG | - | chr6_2:13357913-13357932 | Msa0910010:intron | 40.0% |
| GTCCACATTTATTCGGTCAA+TGG | - | chr6_2:13357984-13358003 | Msa0910010:intron | 40.0% | |
| ! | TTTTCTCCTGATCAGCTATC+TGG | - | chr6_2:13358028-13358047 | Msa0910010:intron | 40.0% |
| TTTCTCCTGATCAGCTATCT+GGG | - | chr6_2:13358029-13358048 | Msa0910010:intron | 40.0% | |
| CTAAAATGAGCGAAACCAGA+AGG | + | chr6_2:13358106-13358125 | None:intergenic | 40.0% | |
| TAATGACATGAGACAAGAGC+TGG | + | chr6_2:13358163-13358182 | None:intergenic | 40.0% | |
| CAGTGAAAATGGAGCTTCTA+TGG | + | chr6_2:13358211-13358230 | None:intergenic | 40.0% | |
| AACTGAAAGCAGCAATGACA+CGG | + | chr6_2:13358254-13358273 | None:intergenic | 40.0% | |
| !! | TCATTGCTGCTTTCAGTTCA+TGG | - | chr6_2:13358256-13358275 | Msa0910010:intron | 40.0% |
| GACAAGATTAAAGACGACGA+TGG | - | chr6_2:13358465-13358484 | Msa0910010:CDS | 40.0% | |
| TTGAAGGGATGAACAACTGC+CGG | + | chr6_2:13353756-13353775 | None:intergenic | 45.0% | |
| CAGAGATTGGGAATGGAAAG+TGG | + | chr6_2:13353799-13353818 | None:intergenic | 45.0% | |
| CTTCTGCTGCGGAATTTGAA+TGG | + | chr6_2:13353824-13353843 | None:intergenic | 45.0% | |
| AGTGACTAAGGTTTCTGCGA+CGG | - | chr6_2:13355016-13355035 | Msa0910010:three_prime_UTR | 45.0% | |
| ! | TGCGACGGATTTATCTCTTG+CGG | - | chr6_2:13355031-13355050 | Msa0910010:three_prime_UTR | 45.0% |
| GGATTTATCTCTTGCGGTGA+AGG | - | chr6_2:13355037-13355056 | Msa0910010:three_prime_UTR | 45.0% | |
| ATGTATCCCCTGAGCTGAAA+GGG | - | chr6_2:13355213-13355232 | Msa0910010:intron | 45.0% | |
| !! | TCAATGGCTTTCGGTGTTTC+TGG | - | chr6_2:13355281-13355300 | Msa0910010:intron | 45.0% |
| AACCAATCTGGGAAAACTGC+TGG | - | chr6_2:13355357-13355376 | Msa0910010:CDS | 45.0% | |
| ! | AGACTGACTTAGGGTCTGTT+TGG | - | chr6_2:13355608-13355627 | Msa0910010:intron | 45.0% |
| ! | GGTCGATTAGTAGTTTGTGC+TGG | - | chr6_2:13356124-13356143 | Msa0910010:intron | 45.0% |
| TTCGAGGACCAAACTCACTA+AGG | + | chr6_2:13356286-13356305 | None:intergenic | 45.0% | |
| GACACTGCCTCACACATTTA+AGG | - | chr6_2:13356428-13356447 | Msa0910010:intron | 45.0% | |
| !! | AAAAGCACTGTGAGGACTTG+AGG | + | chr6_2:13356864-13356883 | None:intergenic | 45.0% |
| !! | AACAGAAGACATGGCTTTGG+AGG | - | chr6_2:13356947-13356966 | Msa0910010:CDS | 45.0% |
| !! | GGTTGAGTTTGCTAAGGGAT+AGG | + | chr6_2:13357400-13357419 | None:intergenic | 45.0% |
| !! | CTGAGAGGTTGAGTTTGCTA+AGG | + | chr6_2:13357406-13357425 | None:intergenic | 45.0% |
| TGTGGCAACTGCAAAAGTTG+AGG | + | chr6_2:13357451-13357470 | None:intergenic | 45.0% | |
| CTCTTCACAAATACTCCCTC+TGG | - | chr6_2:13357541-13357560 | Msa0910010:intron | 45.0% | |
| TGTTCAGCTGTTCTGCCAAA+TGG | - | chr6_2:13357829-13357848 | Msa0910010:intron | 45.0% | |
| GTTGAACCAGAGGATCCATT+TGG | + | chr6_2:13357847-13357866 | None:intergenic | 45.0% | |
| GTGACCAGCAGAAAGGAAAA+TGG | + | chr6_2:13357920-13357939 | None:intergenic | 45.0% | |
| GGCTTTCAGCATATTCCTTC+TGG | - | chr6_2:13358088-13358107 | Msa0910010:intron | 45.0% | |
| TGGAGCTTCTATGGAGATCA+CGG | + | chr6_2:13358202-13358221 | None:intergenic | 45.0% | |
| CGAAACGAAGGCAGTGAAAA+TGG | + | chr6_2:13358222-13358241 | None:intergenic | 45.0% | |
| GATGGTTGAAAACAAGGACC+TGG | + | chr6_2:13358292-13358311 | None:intergenic | 45.0% | |
| ! | ATGGCCCAGGTTGGATAAAA+TGG | + | chr6_2:13358506-13358525 | None:intergenic | 45.0% |
| !! | CATGACAGGTAATGGAAGCA+TGG | + | chr6_2:13358525-13358544 | None:intergenic | 45.0% |
| !! | AGCAGTCGACTTGTTCTTCC+CGG | - | chr6_2:13353734-13353753 | Msa0910010:three_prime_UTR | 50.0% |
| TGAAGGGATGAACAACTGCC+GGG | + | chr6_2:13353755-13353774 | None:intergenic | 50.0% | |
| ! | ATGTGTGTCGGTCTCGAGTA+GGG | - | chr6_2:13354203-13354222 | Msa0910010:intron | 50.0% |
| !! | GTCTCGAGTAGGGCTTTGTT+AGG | - | chr6_2:13354213-13354232 | Msa0910010:intron | 50.0% |
| TGCTACACCTAGGCTCTGTT+TGG | + | chr6_2:13354562-13354581 | None:intergenic | 50.0% | |
| ! | ACACCTTCGACCAGAAGTGT+CGG | - | chr6_2:13354605-13354624 | Msa0910010:intron | 50.0% |
| GATGTATCCCCTGAGCTGAA+AGG | - | chr6_2:13355212-13355231 | Msa0910010:intron | 50.0% | |
| ! | AGCCAGCAGTTTTCCCAGAT+TGG | + | chr6_2:13355362-13355381 | None:intergenic | 50.0% |
| GACAGGCTTCTATGACTCTG+AGG | - | chr6_2:13355571-13355590 | Msa0910010:intron | 50.0% | |
| ! | TGCCTTTAGAGACTGTGGCT+AGG | - | chr6_2:13356553-13356572 | Msa0910010:intron | 50.0% |
| ! | GCCTTTAGAGACTGTGGCTA+GGG | - | chr6_2:13356554-13356573 | Msa0910010:intron | 50.0% |
| TCCCTAGCCACAGTCTCTAA+AGG | + | chr6_2:13356558-13356577 | None:intergenic | 50.0% | |
| TGCTTCAGGATCTTACCCAG+AGG | - | chr6_2:13356620-13356639 | Msa0910010:intron | 50.0% | |
| GTGAGGACTTGAGGCATACA+TGG | + | chr6_2:13356855-13356874 | None:intergenic | 50.0% | |
| GAGAGTAACACCTTCGCCAA+TGG | + | chr6_2:13357493-13357512 | None:intergenic | 50.0% | |
| GTTCTGCCAAATGGATCCTC+TGG | - | chr6_2:13357838-13357857 | Msa0910010:intron | 50.0% | |
| TGAATCGGTGACCAGCAGAA+AGG | + | chr6_2:13357927-13357946 | None:intergenic | 50.0% | |
| AAGCAGCAATGACACGGAGA+GGG | + | chr6_2:13358248-13358267 | None:intergenic | 50.0% | |
| AAAGCAGCAATGACACGGAG+AGG | + | chr6_2:13358249-13358268 | None:intergenic | 50.0% | |
| GTTCATGGTTTCCATCCTCC+AGG | - | chr6_2:13358271-13358290 | Msa0910010:intron | 50.0% | |
| GAAAACAAGGACCTGGAGGA+TGG | + | chr6_2:13358285-13358304 | None:intergenic | 50.0% | |
| GGTTGAAAACAAGGACCTGG+AGG | + | chr6_2:13358289-13358308 | None:intergenic | 50.0% | |
| ! | CATGTGTGTCGGTCTCGAGT+AGG | - | chr6_2:13354202-13354221 | Msa0910010:intron | 55.0% |
| CACCTAGGCTCTGTTTGGCA+AGG | + | chr6_2:13354557-13354576 | None:intergenic | 55.0% | |
| !! | CACAGTAGCACCGACACTTC+TGG | + | chr6_2:13354618-13354637 | None:intergenic | 55.0% |
| TGGAGGACCCTTTCAGCTCA+GGG | + | chr6_2:13355223-13355242 | None:intergenic | 55.0% | |
| ATGGAGGACCCTTTCAGCTC+AGG | + | chr6_2:13355224-13355243 | None:intergenic | 55.0% | |
| ! | TATAGGGCGCTCCTGAGACA+TGG | - | chr6_2:13356510-13356529 | Msa0910010:intron | 55.0% |
| ! | ATAGGGCGCTCCTGAGACAT+GGG | - | chr6_2:13356511-13356530 | Msa0910010:intron | 55.0% |
| AGCAGCAATGACACGGAGAG+GGG | + | chr6_2:13358247-13358266 | None:intergenic | 55.0% | |
| ! | AATGGAAGCATGGCCCAGGT+TGG | + | chr6_2:13358515-13358534 | None:intergenic | 55.0% |
| !! | AGGTAATGGAAGCATGGCCC+AGG | + | chr6_2:13358519-13358538 | None:intergenic | 55.0% |
| GGCCTTGCCAAACAGAGCCT+AGG | - | chr6_2:13354552-13354571 | Msa0910010:intron | 60.0% | |
| ! | GCACCGACACTTCTGGTCGA+AGG | + | chr6_2:13354611-13354630 | None:intergenic | 60.0% |
| GGAGGACCCTTTCAGCTCAG+GGG | + | chr6_2:13355222-13355241 | None:intergenic | 60.0% | |
| GGCAGCCCAGATAGCTGATC+AGG | + | chr6_2:13358037-13358056 | None:intergenic | 60.0% | |
| CGGAGAGGGGATCGAAACGA+AGG | + | chr6_2:13358234-13358253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 13353580 | 13358735 | 13353580 | ID=Msa0910010;Name=Msa0910010 |
| chr6_2 | mRNA | 13353580 | 13358735 | 13353580 | ID=Msa0910010-mRNA-1;Parent=Msa0910010;Name=Msa0910010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=112|1|1|1|0.9|0.90|11|340|292 |
| chr6_2 | exon | 13353580 | 13353875 | 13353580 | ID=Msa0910010-mRNA-1:exon:3039;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13355015 | 13355127 | 13355015 | ID=Msa0910010-mRNA-1:exon:3038;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13355347 | 13355411 | 13355347 | ID=Msa0910010-mRNA-1:exon:3037;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13355501 | 13355579 | 13355501 | ID=Msa0910010-mRNA-1:exon:3036;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13355674 | 13355800 | 13355674 | ID=Msa0910010-mRNA-1:exon:3035;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13356139 | 13356221 | 13356139 | ID=Msa0910010-mRNA-1:exon:3034;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13356723 | 13356810 | 13356723 | ID=Msa0910010-mRNA-1:exon:3033;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13356905 | 13356977 | 13356905 | ID=Msa0910010-mRNA-1:exon:3032;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13357061 | 13357115 | 13357061 | ID=Msa0910010-mRNA-1:exon:3031;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13357257 | 13357303 | 13357257 | ID=Msa0910010-mRNA-1:exon:3030;Parent=Msa0910010-mRNA-1 |
| chr6_2 | exon | 13358431 | 13358735 | 13358431 | ID=Msa0910010-mRNA-1:exon:3029;Parent=Msa0910010-mRNA-1 |
| chr6_2 | five_prime_UTR | 13358624 | 13358735 | 13358624 | ID=Msa0910010-mRNA-1:five_prime_utr;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13358431 | 13358623 | 13358431 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13357257 | 13357303 | 13357257 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13357061 | 13357115 | 13357061 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13356905 | 13356977 | 13356905 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13356723 | 13356810 | 13356723 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13356139 | 13356221 | 13356139 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13355674 | 13355800 | 13355674 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13355501 | 13355579 | 13355501 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13355347 | 13355411 | 13355347 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | CDS | 13355059 | 13355127 | 13355059 | ID=Msa0910010-mRNA-1:cds;Parent=Msa0910010-mRNA-1 |
| chr6_2 | three_prime_UTR | 13355015 | 13355058 | 13355015 | ID=Msa0910010-mRNA-1:three_prime_utr;Parent=Msa0910010-mRNA-1 |
| chr6_2 | three_prime_UTR | 13353580 | 13353875 | 13353580 | ID=Msa0910010-mRNA-1:three_prime_utr;Parent=Msa0910010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
