Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688540 | XP_003612012.2 | 92.131 | 305 | 24 | 0 | 1 | 305 | 1 | 305 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688540 | G7KDL9 | 92.131 | 305 | 24 | 0 | 1 | 305 | 1 | 305 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0688540 | 0.808886 | 2.484037e-50 | -8.615850e-47 |
| Msa0017120 | Msa0688540 | 0.813165 | 2.938220e-51 | -8.615850e-47 |
| Msa0018220 | Msa0688540 | 0.859898 | 3.007994e-63 | -8.615850e-47 |
| Msa0048020 | Msa0688540 | 0.805647 | 1.206684e-49 | -8.615850e-47 |
| Msa0052460 | Msa0688540 | 0.822596 | 2.176302e-53 | -8.615850e-47 |
| Msa0094420 | Msa0688540 | 0.833836 | 4.243179e-56 | -8.615850e-47 |
| Msa0097050 | Msa0688540 | 0.854592 | 1.110864e-61 | -8.615850e-47 |
| Msa0110710 | Msa0688540 | 0.802727 | 4.891856e-49 | -8.615850e-47 |
| Msa0603680 | Msa0688540 | 0.810716 | 1.003991e-50 | -8.615850e-47 |
| Msa0610860 | Msa0688540 | 0.820910 | 5.343098e-53 | -8.615850e-47 |
| Msa0614230 | Msa0688540 | 0.802081 | 6.643278e-49 | -8.615850e-47 |
| Msa0619330 | Msa0688540 | 0.805608 | 1.229914e-49 | -8.615850e-47 |
| Msa0620270 | Msa0688540 | 0.836652 | 8.256131e-57 | -8.615850e-47 |
| Msa0634270 | Msa0688540 | 0.858563 | 7.559642e-63 | -8.615850e-47 |
| Msa0640880 | Msa0688540 | 0.832157 | 1.109313e-55 | -8.615850e-47 |
| Msa0641620 | Msa0688540 | 0.801603 | 8.328213e-49 | -8.615850e-47 |
| Msa0642650 | Msa0688540 | 0.816937 | 4.274961e-52 | -8.615850e-47 |
| Msa0645050 | Msa0688540 | 0.803538 | 3.323022e-49 | -8.615850e-47 |
| Msa0678890 | Msa0688540 | 0.820088 | 8.252405e-53 | -8.615850e-47 |
| Msa0681890 | Msa0688540 | 0.820150 | 7.986502e-53 | -8.615850e-47 |
| Msa0688540 | Msa0690170 | 0.809968 | 1.455408e-50 | -8.615850e-47 |
| Msa0688540 | Msa0700910 | 0.802928 | 4.444880e-49 | -8.615850e-47 |
| Msa0688540 | Msa0703720 | 0.800225 | 1.592249e-48 | -8.615850e-47 |
| Msa0688540 | Msa0716790 | 0.961121 | 2.459394e-119 | -8.615850e-47 |
| Msa0688540 | Msa0722940 | 0.861065 | 1.333114e-63 | -8.615850e-47 |
| Msa0688540 | Msa0723150 | 0.864163 | 1.481581e-64 | -8.615850e-47 |
| Msa0688540 | Msa0738970 | 0.825927 | 3.589962e-54 | -8.615850e-47 |
| Msa0688540 | Msa0757910 | 0.843910 | 1.047892e-58 | -8.615850e-47 |
| Msa0688540 | Msa0799210 | 0.925156 | 2.685956e-90 | -8.615850e-47 |
| Msa0688540 | Msa0803130 | 0.829736 | 4.355485e-55 | -8.615850e-47 |
| Msa0688540 | Msa0805940 | 0.802072 | 6.674260e-49 | -8.615850e-47 |
| Msa0688540 | Msa0819470 | 0.805412 | 1.351449e-49 | -8.615850e-47 |
| Msa0688540 | Msa0820670 | 0.804061 | 2.588416e-49 | -8.615850e-47 |
| Msa0688540 | Msa0841490 | 0.829597 | 4.710066e-55 | -8.615850e-47 |
| Msa0688540 | Msa0843290 | 0.826078 | 3.304133e-54 | -8.615850e-47 |
| Msa0688540 | Msa0843690 | 0.814442 | 1.537259e-51 | -8.615850e-47 |
| Msa0688540 | Msa0859390 | 0.827251 | 1.734358e-54 | -8.615850e-47 |
| Msa0688540 | Msa0873190 | 0.825754 | 3.944929e-54 | -8.615850e-47 |
| Msa0688540 | Msa0890250 | 0.808028 | 3.786506e-50 | -8.615850e-47 |
| Msa0688540 | Msa0905550 | 0.828595 | 8.236355e-55 | -8.615850e-47 |
| Msa0688540 | Msa0906370 | 0.803099 | 4.096515e-49 | -8.615850e-47 |
| Msa0688540 | Msa0930330 | 0.822897 | 1.852412e-53 | -8.615850e-47 |
| Msa0688540 | Msa0931480 | 0.861928 | 7.264900e-64 | -8.615850e-47 |
| Msa0688540 | Msa0931610 | 0.842328 | 2.765149e-58 | -8.615850e-47 |
| Msa0688540 | Msa0937550 | 0.824837 | 6.501822e-54 | -8.615850e-47 |
| Msa0688540 | Msa0938430 | 0.823424 | 1.395777e-53 | -8.615850e-47 |
| Msa0688540 | Msa0955300 | 0.803408 | 3.536877e-49 | -8.615850e-47 |
| Msa0688540 | Msa0974750 | 0.825408 | 4.764116e-54 | -8.615850e-47 |
| Msa0688540 | Msa0975580 | 0.804651 | 1.950496e-49 | -8.615850e-47 |
| Msa0688540 | Msa1004500 | 0.867607 | 1.208354e-65 | -8.615850e-47 |
| Msa0688540 | Msa1004520 | 0.846770 | 1.763162e-59 | -8.615850e-47 |
| Msa0688540 | Msa1007350 | 0.820297 | 7.390733e-53 | -8.615850e-47 |
| Msa0688540 | Msa1014270 | 0.818327 | 2.076476e-52 | -8.615850e-47 |
| Msa0688540 | Msa1018790 | 0.808957 | 2.399574e-50 | -8.615850e-47 |
| Msa0688540 | Msa1022310 | 0.800051 | 1.727949e-48 | -8.615850e-47 |
| Msa0688540 | Msa1027790 | 0.803340 | 3.652758e-49 | -8.615850e-47 |
| Msa0688540 | Msa1044340 | 0.813256 | 2.806920e-51 | -8.615850e-47 |
| Msa0688540 | Msa1045880 | 0.845518 | 3.863925e-59 | -8.615850e-47 |
| Msa0688540 | Msa1045970 | 0.852328 | 4.962182e-61 | -8.615850e-47 |
| Msa0688540 | Msa1046870 | 0.870358 | 1.549646e-66 | -8.615850e-47 |
| Msa0688540 | Msa1055260 | 0.804296 | 2.311920e-49 | -8.615850e-47 |
| Msa0688540 | Msa1055280 | 0.805247 | 1.463509e-49 | -8.615850e-47 |
| Msa0688540 | Msa1061180 | 0.825004 | 5.936407e-54 | -8.615850e-47 |
| Msa0688540 | Msa1100700 | 0.803810 | 2.918797e-49 | -8.615850e-47 |
| Msa0688540 | Msa1106560 | 0.815065 | 1.118609e-51 | -8.615850e-47 |
| Msa0688540 | Msa1107970 | 0.810172 | 1.315167e-50 | -8.615850e-47 |
| Msa0688540 | Msa1112610 | 0.807049 | 6.111871e-50 | -8.615850e-47 |
| Msa0688540 | Msa1134400 | 0.841827 | 3.751348e-58 | -8.615850e-47 |
| Msa0688540 | Msa1147270 | 0.801322 | 9.508559e-49 | -8.615850e-47 |
| Msa0688540 | Msa1149760 | 0.813841 | 2.086260e-51 | -8.615850e-47 |
| Msa0688540 | Msa1175750 | 0.833851 | 4.206306e-56 | -8.615850e-47 |
| Msa0688540 | Msa1186210 | 0.800765 | 1.236022e-48 | -8.615850e-47 |
| Msa0688540 | Msa1190910 | 0.807564 | 4.753761e-50 | -8.615850e-47 |
| Msa0688540 | Msa1197110 | 0.802881 | 4.545125e-49 | -8.615850e-47 |
| Msa0688540 | Msa1200920 | 0.839947 | 1.168243e-57 | -8.615850e-47 |
| Msa0688540 | Msa1208510 | 0.815523 | 8.849227e-52 | -8.615850e-47 |
| Msa0688540 | Msa1220450 | -0.800166 | 1.636858e-48 | -8.615850e-47 |
| Msa0688540 | Msa1221260 | 0.829233 | 5.773593e-55 | -8.615850e-47 |
| Msa0688540 | Msa1226360 | 0.804924 | 1.709853e-49 | -8.615850e-47 |
| Msa0688540 | Msa1232010 | 0.800395 | 1.470241e-48 | -8.615850e-47 |
| Msa0688540 | Msa1232860 | 0.829587 | 4.736584e-55 | -8.615850e-47 |
| Msa0688540 | Msa1235890 | 0.810040 | 1.404750e-50 | -8.615850e-47 |
| Msa0688540 | Msa1254800 | 0.801469 | 8.872480e-49 | -8.615850e-47 |
| Msa0688540 | Msa1258810 | 0.859535 | 3.868725e-63 | -8.615850e-47 |
| Msa0688540 | Msa1271510 | 0.801386 | 9.225832e-49 | -8.615850e-47 |
| Msa0688540 | Msa1274740 | 0.802803 | 4.717304e-49 | -8.615850e-47 |
| Msa0688540 | Msa1275290 | 0.803365 | 3.608790e-49 | -8.615850e-47 |
| Msa0688540 | Msa1284030 | 0.835347 | 1.769189e-56 | -8.615850e-47 |
| Msa0688540 | Msa1302150 | 0.814609 | 1.411740e-51 | -8.615850e-47 |
| Msa0688540 | Msa1307370 | 0.815952 | 7.101019e-52 | -8.615850e-47 |
| Msa0688540 | Msa1312730 | 0.824047 | 9.975331e-54 | -8.615850e-47 |
| Msa0688540 | Msa1313460 | 0.805386 | 1.368793e-49 | -8.615850e-47 |
| Msa0688540 | Msa1315980 | 0.822285 | 2.571253e-53 | -8.615850e-47 |
| Msa0688540 | Msa1321000 | 0.801713 | 7.907864e-49 | -8.615850e-47 |
| Msa0688540 | Msa1323060 | 0.818062 | 2.384072e-52 | -8.615850e-47 |
| Msa0688540 | Msa1330240 | 0.845876 | 3.089834e-59 | -8.615850e-47 |
| Msa0688540 | Msa1337340 | 0.819474 | 1.139397e-52 | -8.615850e-47 |
| Msa0688540 | Msa1350670 | 0.818643 | 1.761503e-52 | -8.615850e-47 |
| Msa0688540 | Msa1354040 | 0.837511 | 4.977702e-57 | -8.615850e-47 |
| Msa0688540 | Msa1355400 | 0.817488 | 3.213614e-52 | -8.615850e-47 |
| Msa0688540 | Msa1365020 | 0.805775 | 1.134239e-49 | -8.615850e-47 |
| Msa0688540 | Msa1369860 | 0.820767 | 5.763024e-53 | -8.615850e-47 |
| Msa0688540 | Msa1379980 | 0.816158 | 6.388839e-52 | -8.615850e-47 |
| Msa0688540 | Msa1379990 | 0.816163 | 6.371885e-52 | -8.615850e-47 |
| Msa0688540 | Msa1382720 | 0.816033 | 6.811232e-52 | -8.615850e-47 |
| Msa0688540 | Msa1389470 | 0.801665 | 8.087974e-49 | -8.615850e-47 |
| Msa0688540 | Msa1420060 | 0.821631 | 3.642912e-53 | -8.615850e-47 |
| Msa0688540 | Msa1429830 | 0.829300 | 5.559954e-55 | -8.615850e-47 |
| Msa0688540 | Msa1435040 | 0.827364 | 1.629455e-54 | -8.615850e-47 |
| Msa0688540 | Msa1435050 | 0.812034 | 5.192471e-51 | -8.615850e-47 |
| Msa0688540 | Msa1435670 | 0.824696 | 7.016866e-54 | -8.615850e-47 |
| Msa0688540 | Msa1437150 | 0.826237 | 3.028272e-54 | -8.615850e-47 |
| Msa0688540 | Msa1439670 | 0.827486 | 1.523626e-54 | -8.615850e-47 |
| Msa0688540 | Msa1447230 | 0.800821 | 1.203840e-48 | -8.615850e-47 |
| Msa0688540 | Msa1450030 | 0.807275 | 5.474205e-50 | -8.615850e-47 |
| Msa0135980 | Msa0688540 | 0.812682 | 3.748669e-51 | -8.615850e-47 |
| Msa0139900 | Msa0688540 | 0.879799 | 9.276722e-70 | -8.615850e-47 |
| Msa0141430 | Msa0688540 | 0.801574 | 8.445039e-49 | -8.615850e-47 |
| Msa0141670 | Msa0688540 | 0.813290 | 2.759139e-51 | -8.615850e-47 |
| Msa0146470 | Msa0688540 | 0.805023 | 1.630219e-49 | -8.615850e-47 |
| Msa0157020 | Msa0688540 | 0.815426 | 9.303228e-52 | -8.615850e-47 |
| Msa0161200 | Msa0688540 | 0.804673 | 1.929821e-49 | -8.615850e-47 |
| Msa0168390 | Msa0688540 | 0.801010 | 1.101419e-48 | -8.615850e-47 |
| Msa0200970 | Msa0688540 | 0.829355 | 5.393115e-55 | -8.615850e-47 |
| Msa0207180 | Msa0688540 | 0.841888 | 3.616210e-58 | -8.615850e-47 |
| Msa0224690 | Msa0688540 | 0.808364 | 3.211249e-50 | -8.615850e-47 |
| Msa0227500 | Msa0688540 | 0.801791 | 7.620084e-49 | -8.615850e-47 |
| Msa0230400 | Msa0688540 | 0.839328 | 1.692019e-57 | -8.615850e-47 |
| Msa0370600 | Msa0688540 | 0.817625 | 2.992039e-52 | -8.615850e-47 |
| Msa0378340 | Msa0688540 | 0.830603 | 2.675294e-55 | -8.615850e-47 |
| Msa0382560 | Msa0688540 | 0.839265 | 1.757617e-57 | -8.615850e-47 |
| Msa0413930 | Msa0688540 | 0.814099 | 1.830733e-51 | -8.615850e-47 |
| Msa0418200 | Msa0688540 | 0.817571 | 3.078374e-52 | -8.615850e-47 |
| Msa0427520 | Msa0688540 | -0.804532 | 2.064374e-49 | -8.615850e-47 |
| Msa0427690 | Msa0688540 | 0.829687 | 4.477155e-55 | -8.615850e-47 |
| Msa0436450 | Msa0688540 | 0.813864 | 2.062187e-51 | -8.615850e-47 |
| Msa0439780 | Msa0688540 | 0.827411 | 1.588084e-54 | -8.615850e-47 |
| Msa0458110 | Msa0688540 | 0.805854 | 1.091650e-49 | -8.615850e-47 |
| Msa0468610 | Msa0688540 | 0.819092 | 1.392318e-52 | -8.615850e-47 |
| Msa0239660 | Msa0688540 | 0.805840 | 1.099284e-49 | -8.615850e-47 |
| Msa0260970 | Msa0688540 | 0.806853 | 6.722856e-50 | -8.615850e-47 |
| Msa0274780 | Msa0688540 | 0.849030 | 4.200464e-60 | -8.615850e-47 |
| Msa0277640 | Msa0688540 | 0.805082 | 1.585124e-49 | -8.615850e-47 |
| Msa0297920 | Msa0688540 | 0.838569 | 2.660728e-57 | -8.615850e-47 |
| Msa0315480 | Msa0688540 | 0.851657 | 7.696452e-61 | -8.615850e-47 |
| Msa0320540 | Msa0688540 | 0.804745 | 1.863863e-49 | -8.615850e-47 |
| Msa0344070 | Msa0688540 | 0.809595 | 1.751191e-50 | -8.615850e-47 |
| Msa0510230 | Msa0688540 | 0.817069 | 3.991352e-52 | -8.615850e-47 |
| Msa0514490 | Msa0688540 | 0.817488 | 3.212987e-52 | -8.615850e-47 |
| Msa0518520 | Msa0688540 | 0.830634 | 2.629887e-55 | -8.615850e-47 |
| Msa0519200 | Msa0688540 | 0.812140 | 4.924670e-51 | -8.615850e-47 |
| Msa0525240 | Msa0688540 | 0.820891 | 5.396318e-53 | -8.615850e-47 |
| Msa0526130 | Msa0688540 | 0.811115 | 8.226742e-51 | -8.615850e-47 |
| Msa0538570 | Msa0688540 | 0.860941 | 1.453197e-63 | -8.615850e-47 |
| Msa0543850 | Msa0688540 | 0.811316 | 7.440828e-51 | -8.615850e-47 |
| Msa0561510 | Msa0688540 | 0.814227 | 1.714999e-51 | -8.615850e-47 |
| Msa0575250 | Msa0688540 | 0.809085 | 2.252470e-50 | -8.615850e-47 |
| Msa0576420 | Msa0688540 | 0.800727 | 1.258200e-48 | -8.615850e-47 |
| Msa0578900 | Msa0688540 | 0.826817 | 2.203050e-54 | -8.615850e-47 |
| Msa0581340 | Msa0688540 | 0.827019 | 1.971073e-54 | -8.615850e-47 |
| Msa0594390 | Msa0688540 | 0.876102 | 1.823384e-68 | -8.615850e-47 |
| Msa0600390 | Msa0688540 | 0.826842 | 2.172849e-54 | -8.615850e-47 |
| Msa0601110 | Msa0688540 | 0.825383 | 4.829976e-54 | -8.615850e-47 |
| Msa0601120 | Msa0688540 | 0.824827 | 6.536345e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688540 | MtrunA17_Chr5g0404211 | 92.131 | 305 | 24 | 0 | 1 | 305 | 1 | 305 | 0.0 | 584 |
| Msa0688540 | MtrunA17_Chr5g0404141 | 76.206 | 311 | 68 | 1 | 1 | 305 | 1 | 311 | 1.15e-177 | 493 |
| Msa0688540 | MtrunA17_Chr8g0373201 | 62.783 | 309 | 106 | 1 | 1 | 300 | 1 | 309 | 1.32e-141 | 402 |
| Msa0688540 | MtrunA17_Chr5g0404161 | 76.852 | 216 | 44 | 1 | 1 | 210 | 11 | 226 | 8.24e-117 | 335 |
| Msa0688540 | MtrunA17_Chr3g0136411 | 37.319 | 276 | 163 | 5 | 26 | 297 | 32 | 301 | 1.37e-58 | 190 |
| Msa0688540 | MtrunA17_Chr5g0404171 | 91.398 | 93 | 8 | 0 | 211 | 303 | 1 | 93 | 1.46e-57 | 180 |
| Msa0688540 | MtrunA17_Chr5g0426241 | 33.333 | 297 | 178 | 7 | 9 | 296 | 13 | 298 | 4.37e-54 | 178 |
| Msa0688540 | MtrunA17_Chr3g0123881 | 35.593 | 295 | 172 | 7 | 9 | 296 | 15 | 298 | 5.67e-54 | 178 |
| Msa0688540 | MtrunA17_Chr2g0279171 | 32.270 | 282 | 181 | 6 | 19 | 296 | 26 | 301 | 1.30e-48 | 165 |
| Msa0688540 | MtrunA17_Chr8g0382001 | 36.290 | 124 | 73 | 2 | 15 | 138 | 18 | 135 | 5.50e-21 | 87.4 |
| Msa0688540 | MtrunA17_Chr8g0381981 | 29.932 | 147 | 84 | 3 | 169 | 296 | 10 | 156 | 3.12e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688540 | AT2G18360.1 | 55.016 | 309 | 129 | 1 | 1 | 299 | 1 | 309 | 7.29e-127 | 365 |
| Msa0688540 | AT4G36610.1 | 51.923 | 312 | 142 | 1 | 1 | 304 | 1 | 312 | 1.06e-119 | 347 |
| Msa0688540 | AT2G18360.2 | 51.471 | 272 | 122 | 1 | 1 | 262 | 1 | 272 | 1.46e-102 | 301 |
| Msa0688540 | AT5G21950.1 | 35.816 | 282 | 176 | 4 | 18 | 296 | 22 | 301 | 1.25e-56 | 185 |
| Msa0688540 | AT5G21950.6 | 35.816 | 282 | 176 | 4 | 18 | 296 | 74 | 353 | 1.06e-55 | 184 |
| Msa0688540 | AT1G78210.1 | 33.916 | 286 | 179 | 6 | 17 | 296 | 20 | 301 | 8.10e-55 | 181 |
| Msa0688540 | AT4G39955.1 | 32.993 | 294 | 179 | 6 | 13 | 298 | 16 | 299 | 1.26e-51 | 173 |
| Msa0688540 | AT5G21950.7 | 35.887 | 248 | 154 | 4 | 18 | 262 | 22 | 267 | 2.33e-48 | 162 |
| Msa0688540 | AT4G33180.1 | 31.399 | 293 | 180 | 8 | 16 | 296 | 21 | 304 | 8.56e-47 | 160 |
| Msa0688540 | AT5G09430.1 | 30.952 | 294 | 181 | 7 | 15 | 296 | 24 | 307 | 4.67e-44 | 153 |
| Msa0688540 | AT1G17430.1 | 31.597 | 288 | 171 | 9 | 25 | 298 | 56 | 331 | 3.30e-39 | 140 |
| Msa0688540 | AT1G72620.1 | 30.035 | 283 | 182 | 7 | 25 | 299 | 60 | 334 | 3.64e-39 | 140 |
| Msa0688540 | AT5G21950.3 | 34.694 | 196 | 125 | 2 | 18 | 212 | 22 | 215 | 1.26e-34 | 125 |
| Msa0688540 | AT5G21950.2 | 34.694 | 196 | 125 | 2 | 18 | 212 | 22 | 215 | 1.26e-34 | 125 |
| Msa0688540 | AT5G21950.5 | 34.694 | 196 | 125 | 2 | 18 | 212 | 74 | 267 | 6.44e-34 | 125 |
| Msa0688540 | AT5G21950.4 | 34.694 | 196 | 125 | 2 | 18 | 212 | 74 | 267 | 6.44e-34 | 125 |
| Msa0688540 | AT4G33180.2 | 31.707 | 205 | 121 | 6 | 16 | 210 | 21 | 216 | 5.85e-29 | 110 |
Find 82 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTACCTGTGAAAATTT+TGG | 0.092151 | 4_4:-54630371 | None:intergenic |
| ACAATAGTAACTTATACTTT+AGG | 0.255781 | 4_4:-54630955 | None:intergenic |
| CAATAGTAACTTATACTTTA+GGG | 0.286165 | 4_4:-54630954 | None:intergenic |
| GGCTGGTCATTTGGCTCATC+TGG | 0.296159 | 4_4:+54630778 | Msa0688540:CDS |
| AAGGTACACGTATGAGATTC+TGG | 0.334714 | 4_4:+54628912 | Msa0688540:CDS |
| AAAATCATTGAGCAGGCAAT+TGG | 0.336654 | 4_4:-54629422 | None:intergenic |
| TGGCTTGATGGACTTGGACT+TGG | 0.338171 | 4_4:-54628960 | None:intergenic |
| GTGAACATAATTTGGTCATT+TGG | 0.340509 | 4_4:+54628836 | Msa0688540:CDS |
| GAATATATCAAAGGTGTGTT+TGG | 0.364343 | 4_4:+54630888 | Msa0688540:three_prime_UTR |
| AATAAAGAAGGCTGGTCATT+TGG | 0.368845 | 4_4:+54630769 | Msa0688540:CDS |
| GGCTTGATGGACTTGGACTT+GGG | 0.373325 | 4_4:-54628959 | None:intergenic |
| TGCTGGATTCTCTTCTTGTT+CGG | 0.380760 | 4_4:+54629324 | Msa0688540:CDS |
| TACAAGAGTCTTTGATTAGT+AGG | 0.383277 | 4_4:+54629290 | Msa0688540:CDS |
| TGGGGTGGAGAAATGTGTTT+TGG | 0.383408 | 4_4:+54629171 | Msa0688540:CDS |
| AGTTGTAACTGGCTCCGTTT+TGG | 0.386196 | 4_4:+54629264 | Msa0688540:CDS |
| GAGAACCACCACTGGCTTGA+TGG | 0.386783 | 4_4:-54628972 | None:intergenic |
| CTCCACGGCTTCTGCGGTGA+TGG | 0.387211 | 4_4:+54628995 | Msa0688540:CDS |
| CACCACTGGCTTGATGGACT+TGG | 0.394304 | 4_4:-54628966 | None:intergenic |
| GTTCAAGCTGTAGTTGTAAC+TGG | 0.395281 | 4_4:+54629253 | Msa0688540:CDS |
| TAATTTGGTCATTTGGTAGT+TGG | 0.398888 | 4_4:+54628843 | Msa0688540:CDS |
| TGGAATGGTGGCGTTTAAAA+TGG | 0.401285 | 4_4:+54629210 | Msa0688540:CDS |
| TGAACATGGTGAACATAATT+TGG | 0.408308 | 4_4:+54628828 | Msa0688540:CDS |
| TGGAGCCGCCGAAGAAAATT+AGG | 0.408458 | 4_4:-54629081 | None:intergenic |
| GGCTGAGCTTTATAGTGATC+TGG | 0.412917 | 4_4:+54629231 | Msa0688540:CDS |
| GTTATTGCCATCTTCTATTG+AGG | 0.428516 | 4_4:+54629351 | Msa0688540:CDS |
| ATCTTCTATTGAGGGATTGA+AGG | 0.442559 | 4_4:+54629360 | Msa0688540:CDS |
| TTTATGTTCTGCGCAACCTC+TGG | 0.449101 | 4_4:-54630601 | None:intergenic |
| GTAAGATTTATATTAGTGTT+GGG | 0.449874 | 4_4:-54630994 | None:intergenic |
| CGGAAGAAAGAAACTTCTTC+AGG | 0.453523 | 4_4:-54630826 | None:intergenic |
| TTATTGCCATCTTCTATTGA+GGG | 0.454208 | 4_4:+54629352 | Msa0688540:CDS |
| GTCTTTGATTAGTAGGGCAG+TGG | 0.457317 | 4_4:+54629297 | Msa0688540:CDS |
| AGTAAGATTTATATTAGTGT+TGG | 0.458401 | 4_4:-54630995 | None:intergenic |
| GCAGAGGGGTTAAAGAAACT+TGG | 0.468717 | 4_4:+54629151 | Msa0688540:CDS |
| AACGACCATGTATTTACAAT+AGG | 0.473541 | 4_4:+54630801 | Msa0688540:CDS |
| GGAGCGAAGTGAGCTATTAG+AGG | 0.475327 | 4_4:+54630316 | Msa0688540:CDS |
| TGCAGGTGATGTTCTCGAAT+AGG | 0.486436 | 4_4:+54630291 | Msa0688540:intron |
| TGGATTCAGTTATGGTGGAA+TGG | 0.487428 | 4_4:+54629195 | Msa0688540:CDS |
| TTTGTGTATTCAGAAACATT+TGG | 0.487702 | 4_4:+54629395 | Msa0688540:CDS |
| AAATCATTGAGCAGGCAATT+GGG | 0.488795 | 4_4:-54629421 | None:intergenic |
| ACAAGAGTCTTTGATTAGTA+GGG | 0.490764 | 4_4:+54629291 | Msa0688540:CDS |
| CAAGCAGAGTGTTTGGCAGA+GGG | 0.503609 | 4_4:+54629136 | Msa0688540:CDS |
| AAACACTCTGCTTGAAAAGC+CGG | 0.504345 | 4_4:-54629127 | None:intergenic |
| AACATTTGAAGTAATAAAGA+AGG | 0.507370 | 4_4:+54630757 | Msa0688540:CDS |
| TTGAAAAGCCGGTGATCGGT+CGG | 0.507567 | 4_4:-54629116 | None:intergenic |
| TGAAAAGCCGGTGATCGGTC+GGG | 0.508873 | 4_4:-54629115 | None:intergenic |
| CAGAGGGGTTAAAGAAACTT+GGG | 0.513583 | 4_4:+54629152 | Msa0688540:CDS |
| CCTTTAGAAAATCATTGAGC+AGG | 0.514969 | 4_4:-54629429 | None:intergenic |
| GTCCATCACCGCAGAAGCCG+TGG | 0.517790 | 4_4:-54628997 | None:intergenic |
| TCAAGCAGAGTGTTTGGCAG+AGG | 0.521718 | 4_4:+54629135 | Msa0688540:CDS |
| TTGGTTGGATTCAGTTATGG+TGG | 0.526865 | 4_4:+54629190 | Msa0688540:CDS |
| AGACTCTTGTATAGCCAAAA+CGG | 0.529566 | 4_4:-54629278 | None:intergenic |
| AGGTACACGTATGAGATTCT+GGG | 0.532553 | 4_4:+54628913 | Msa0688540:CDS |
| CTGCTTGAAAAGCCGGTGAT+CGG | 0.535364 | 4_4:-54629120 | None:intergenic |
| CGGTGATGGACTTGCAACAT+GGG | 0.541625 | 4_4:+54629009 | Msa0688540:CDS |
| TTCAATCCCTCAATAGAAGA+TGG | 0.543411 | 4_4:-54629358 | None:intergenic |
| CTTAAAACATTGCAAAGCGA+AGG | 0.544964 | 4_4:+54628764 | Msa0688540:five_prime_UTR |
| GCGGTGATGGACTTGCAACA+TGG | 0.546302 | 4_4:+54629008 | Msa0688540:CDS |
| TCGGTCGGGCTTATCAGTTA+TGG | 0.551880 | 4_4:-54629101 | None:intergenic |
| CCGCCGAAGAAAATTAGGTC+AGG | 0.554011 | 4_4:-54629076 | None:intergenic |
| GTTCTCCTCCACGGCTTCTG+CGG | 0.555958 | 4_4:+54628989 | Msa0688540:CDS |
| GATGCATATATCAGGACGCT+AGG | 0.560135 | 4_4:+54630725 | Msa0688540:intron |
| TTTGAAGTAATAAAGAAGGC+TGG | 0.561474 | 4_4:+54630761 | Msa0688540:CDS |
| CACATCTATGAATATATCAA+AGG | 0.563351 | 4_4:+54630879 | Msa0688540:three_prime_UTR |
| AGTAGGGCAGTGGAAGATGC+TGG | 0.564974 | 4_4:+54629307 | Msa0688540:CDS |
| TTAATTAAACATGGTGAACA+TGG | 0.570656 | 4_4:+54628814 | Msa0688540:exon |
| TGATAAGCCCGACCGATCAC+CGG | 0.571968 | 4_4:+54629108 | Msa0688540:CDS |
| AGGCACCTATTGTAAATACA+TGG | 0.591373 | 4_4:-54630806 | None:intergenic |
| CCGTGGAGGAGAACCACCAC+TGG | 0.606123 | 4_4:-54628980 | None:intergenic |
| TGTACCTTGCTCTATCTCCA+CGG | 0.623766 | 4_4:-54628897 | None:intergenic |
| CCAGTGGTGGTTCTCCTCCA+CGG | 0.625931 | 4_4:+54628980 | Msa0688540:CDS |
| GGTGATGTTCTCGAATAGGA+AGG | 0.637660 | 4_4:+54630295 | Msa0688540:intron |
| CAAGTCCATCAAGCCAGTGG+TGG | 0.639034 | 4_4:+54628967 | Msa0688540:CDS |
| AAGCAGAGTGTTTGGCAGAG+GGG | 0.643656 | 4_4:+54629137 | Msa0688540:CDS |
| AGTTGGACGATGAAGAATGT+AGG | 0.646491 | 4_4:+54628860 | Msa0688540:CDS |
| CATCACCGCAGAAGCCGTGG+AGG | 0.648231 | 4_4:-54628994 | None:intergenic |
| GTCCAAGTCCATCAAGCCAG+TGG | 0.652930 | 4_4:+54628964 | Msa0688540:CDS |
| AGAAACAAATTAATTAAACA+TGG | 0.654980 | 4_4:+54628805 | Msa0688540:exon |
| ATTCAGTTATGGTGGAATGG+TGG | 0.669440 | 4_4:+54629198 | Msa0688540:CDS |
| TACACCGTGGAGATAGAGCA+AGG | 0.676163 | 4_4:+54628893 | Msa0688540:CDS |
| GGGGTTAAAGAAACTTGGGG+TGG | 0.683398 | 4_4:+54629156 | Msa0688540:CDS |
| AGAGGGGTTAAAGAAACTTG+GGG | 0.711749 | 4_4:+54629153 | Msa0688540:CDS |
| AGGTGTGAAGCTTTACACCG+TGG | 0.765486 | 4_4:+54628880 | Msa0688540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATAATAATAATAAT+AGG | - | chr4_4:54629768-54629787 | None:intergenic | 0.0% |
| !! | TATAAAATAATAATAATAAT+AGG | - | chr4_4:54629768-54629787 | None:intergenic | 0.0% |
| !!! | AAAAATTGATTGATAATTAA+AGG | - | chr4_4:54629681-54629700 | None:intergenic | 10.0% |
| !!! | TTCTTTTAAAAAAATGTTAT+TGG | + | chr4_4:54629817-54629836 | Msa0688540:intron | 10.0% |
| !!! | TAACTTATCATTTATTTTTA+GGG | - | chr4_4:54629883-54629902 | None:intergenic | 10.0% |
| !!! | TTAACTTATCATTTATTTTT+AGG | - | chr4_4:54629884-54629903 | None:intergenic | 10.0% |
| !! | ATTATTTCAAATCATTATTA+TGG | + | chr4_4:54630654-54630673 | Msa0688540:intron | 10.0% |
| !!! | ATATTTTATAAGTTATTATC+TGG | + | chr4_4:54630918-54630937 | Msa0688540:three_prime_UTR | 10.0% |
| !!! | TATTTTATAAGTTATTATCT+GGG | + | chr4_4:54630919-54630938 | Msa0688540:three_prime_UTR | 10.0% |
| !!! | AAAAATTGATTGATAATTAA+AGG | - | chr4_4:54629681-54629700 | None:intergenic | 10.0% |
| !!! | TTCTTTTAAAAAAATGTTAT+TGG | + | chr4_4:54629817-54629836 | Msa0688540:intron | 10.0% |
| !!! | TAACTTATCATTTATTTTTA+GGG | - | chr4_4:54629883-54629902 | None:intergenic | 10.0% |
| !!! | TTAACTTATCATTTATTTTT+AGG | - | chr4_4:54629884-54629903 | None:intergenic | 10.0% |
| !! | ATTATTTCAAATCATTATTA+TGG | + | chr4_4:54630654-54630673 | Msa0688540:intron | 10.0% |
| !!! | ATATTTTATAAGTTATTATC+TGG | + | chr4_4:54630918-54630937 | Msa0688540:three_prime_UTR | 10.0% |
| !!! | TATTTTATAAGTTATTATCT+GGG | + | chr4_4:54630919-54630938 | Msa0688540:three_prime_UTR | 10.0% |
| !! | AGAAACAAATTAATTAAACA+TGG | + | chr4_4:54628805-54628824 | Msa0688540:exon | 15.0% |
| !!! | AACTTATCATTTATTTTTAG+GGG | - | chr4_4:54629882-54629901 | None:intergenic | 15.0% |
| !!! | GATAATAAAAACTTAAGTTT+TGG | - | chr4_4:54630504-54630523 | None:intergenic | 15.0% |
| !! | AGAAACAAATTAATTAAACA+TGG | + | chr4_4:54628805-54628824 | Msa0688540:exon | 15.0% |
| !!! | AACTTATCATTTATTTTTAG+GGG | - | chr4_4:54629882-54629901 | None:intergenic | 15.0% |
| !!! | GATAATAAAAACTTAAGTTT+TGG | - | chr4_4:54630504-54630523 | None:intergenic | 15.0% |
| !! | TTGACAAAAAAAAAAGATTG+TGG | - | chr4_4:54629514-54629533 | None:intergenic | 20.0% |
| !! | AATTGCAGAAAGATAATTAA+AGG | + | chr4_4:54629704-54629723 | Msa0688540:intron | 20.0% |
| !! | ATTGCAGAAAGATAATTAAA+GGG | + | chr4_4:54629705-54629724 | Msa0688540:intron | 20.0% |
| !! | AAAGATAATTAAAGGGTTAT+TGG | + | chr4_4:54629712-54629731 | Msa0688540:intron | 20.0% |
| !! | AACATTATATCATTAATTGC+AGG | + | chr4_4:54630274-54630293 | Msa0688540:intron | 20.0% |
| !!! | AAATTACCTGTGAAAATTTT+GGG | - | chr4_4:54630373-54630392 | None:intergenic | 20.0% |
| !!! | TAAATTACCTGTGAAAATTT+TGG | - | chr4_4:54630374-54630393 | None:intergenic | 20.0% |
| !!! | AAAAACTTAAGTTTTGGAAT+GGG | - | chr4_4:54630498-54630517 | None:intergenic | 20.0% |
| !!! | TAAAAACTTAAGTTTTGGAA+TGG | - | chr4_4:54630499-54630518 | None:intergenic | 20.0% |
| !! | TTGAAATAATTATAACTACG+TGG | - | chr4_4:54630644-54630663 | None:intergenic | 20.0% |
| !!! | AACATTTGAAGTAATAAAGA+AGG | + | chr4_4:54630757-54630776 | Msa0688540:CDS | 20.0% |
| !! | CAATAGTAACTTATACTTTA+GGG | - | chr4_4:54630957-54630976 | None:intergenic | 20.0% |
| !! | ACAATAGTAACTTATACTTT+AGG | - | chr4_4:54630958-54630977 | None:intergenic | 20.0% |
| !! | TTGACAAAAAAAAAAGATTG+TGG | - | chr4_4:54629514-54629533 | None:intergenic | 20.0% |
| !! | AATTGCAGAAAGATAATTAA+AGG | + | chr4_4:54629704-54629723 | Msa0688540:intron | 20.0% |
| !! | ATTGCAGAAAGATAATTAAA+GGG | + | chr4_4:54629705-54629724 | Msa0688540:intron | 20.0% |
| !! | AAAGATAATTAAAGGGTTAT+TGG | + | chr4_4:54629712-54629731 | Msa0688540:intron | 20.0% |
| !! | AACATTATATCATTAATTGC+AGG | + | chr4_4:54630274-54630293 | Msa0688540:intron | 20.0% |
| !!! | AAATTACCTGTGAAAATTTT+GGG | - | chr4_4:54630373-54630392 | None:intergenic | 20.0% |
| !!! | TAAATTACCTGTGAAAATTT+TGG | - | chr4_4:54630374-54630393 | None:intergenic | 20.0% |
| !!! | AAAAACTTAAGTTTTGGAAT+GGG | - | chr4_4:54630498-54630517 | None:intergenic | 20.0% |
| !!! | TAAAAACTTAAGTTTTGGAA+TGG | - | chr4_4:54630499-54630518 | None:intergenic | 20.0% |
| !! | TTGAAATAATTATAACTACG+TGG | - | chr4_4:54630644-54630663 | None:intergenic | 20.0% |
| !!! | AACATTTGAAGTAATAAAGA+AGG | + | chr4_4:54630757-54630776 | Msa0688540:CDS | 20.0% |
| !! | CAATAGTAACTTATACTTTA+GGG | - | chr4_4:54630957-54630976 | None:intergenic | 20.0% |
| !! | ACAATAGTAACTTATACTTT+AGG | - | chr4_4:54630958-54630977 | None:intergenic | 20.0% |
| ! | TTAATTAAACATGGTGAACA+TGG | + | chr4_4:54628814-54628833 | Msa0688540:exon | 25.0% |
| ! | TTTGTGTATTCAGAAACATT+TGG | + | chr4_4:54629395-54629414 | Msa0688540:CDS | 25.0% |
| ! | TTGTTAAACAAATGTATGCA+AGG | + | chr4_4:54629652-54629671 | Msa0688540:intron | 25.0% |
| ! | TTTGATGAGACAACAAAATA+TGG | + | chr4_4:54629847-54629866 | Msa0688540:intron | 25.0% |
| !!! | TCAATTTTGAGGTTTTAAAC+CGG | - | chr4_4:54629974-54629993 | None:intergenic | 25.0% |
| !! | GTTTAAAACCTCAAAATTGA+GGG | + | chr4_4:54629974-54629993 | Msa0688540:intron | 25.0% |
| !! | AGATAAAATTTTCAAACCAG+AGG | + | chr4_4:54630585-54630604 | Msa0688540:CDS | 25.0% |
| ! | GTGATCAAGATAAACTTTAA+AGG | - | chr4_4:54630690-54630709 | None:intergenic | 25.0% |
| ! | TAATTGTTGATGCATATATC+AGG | + | chr4_4:54630717-54630736 | Msa0688540:intron | 25.0% |
| !! | TTTTCTTTCATCAAGCATAA+CGG | - | chr4_4:54630849-54630868 | None:intergenic | 25.0% |
| ! | CACATCTATGAATATATCAA+AGG | + | chr4_4:54630879-54630898 | Msa0688540:three_prime_UTR | 25.0% |
| ! | TTAATTAAACATGGTGAACA+TGG | + | chr4_4:54628814-54628833 | Msa0688540:exon | 25.0% |
| ! | TTTGTGTATTCAGAAACATT+TGG | + | chr4_4:54629395-54629414 | Msa0688540:CDS | 25.0% |
| ! | TTGTTAAACAAATGTATGCA+AGG | + | chr4_4:54629652-54629671 | Msa0688540:intron | 25.0% |
| ! | TTTGATGAGACAACAAAATA+TGG | + | chr4_4:54629847-54629866 | Msa0688540:intron | 25.0% |
| !!! | TCAATTTTGAGGTTTTAAAC+CGG | - | chr4_4:54629974-54629993 | None:intergenic | 25.0% |
| !! | GTTTAAAACCTCAAAATTGA+GGG | + | chr4_4:54629974-54629993 | Msa0688540:intron | 25.0% |
| !! | AGATAAAATTTTCAAACCAG+AGG | + | chr4_4:54630585-54630604 | Msa0688540:CDS | 25.0% |
| ! | GTGATCAAGATAAACTTTAA+AGG | - | chr4_4:54630690-54630709 | None:intergenic | 25.0% |
| ! | TAATTGTTGATGCATATATC+AGG | + | chr4_4:54630717-54630736 | Msa0688540:intron | 25.0% |
| !! | TTTTCTTTCATCAAGCATAA+CGG | - | chr4_4:54630849-54630868 | None:intergenic | 25.0% |
| ! | CACATCTATGAATATATCAA+AGG | + | chr4_4:54630879-54630898 | Msa0688540:three_prime_UTR | 25.0% |
| TGAACATGGTGAACATAATT+TGG | + | chr4_4:54628828-54628847 | Msa0688540:CDS | 30.0% | |
| GTGAACATAATTTGGTCATT+TGG | + | chr4_4:54628836-54628855 | Msa0688540:CDS | 30.0% | |
| ! | TAATTTGGTCATTTGGTAGT+TGG | + | chr4_4:54628843-54628862 | Msa0688540:CDS | 30.0% |
| !!! | GGCTTTGAAATAGTTTTAGA+TGG | - | chr4_4:54628941-54628960 | None:intergenic | 30.0% |
| TACAAGAGTCTTTGATTAGT+AGG | + | chr4_4:54629290-54629309 | Msa0688540:CDS | 30.0% | |
| ACAAGAGTCTTTGATTAGTA+GGG | + | chr4_4:54629291-54629310 | Msa0688540:CDS | 30.0% | |
| TTATTGCCATCTTCTATTGA+GGG | + | chr4_4:54629352-54629371 | Msa0688540:CDS | 30.0% | |
| !! | AAAAAATGATGGGTACATGT+AGG | + | chr4_4:54629947-54629966 | Msa0688540:intron | 30.0% |
| ! | GGTTTAAAACCTCAAAATTG+AGG | + | chr4_4:54629973-54629992 | Msa0688540:intron | 30.0% |
| !! | TGTTTTTACAATCATGGCTA+AGG | - | chr4_4:54630092-54630111 | None:intergenic | 30.0% |
| CCATAAATACCTATAGAGAT+GGG | - | chr4_4:54630115-54630134 | None:intergenic | 30.0% | |
| !!! | CTCTAACACTCTTTGTTTTA+CGG | + | chr4_4:54630409-54630428 | Msa0688540:intron | 30.0% |
| !!! | TCTAACACTCTTTGTTTTAC+GGG | + | chr4_4:54630410-54630429 | Msa0688540:intron | 30.0% |
| ! | TTTGAAGTAATAAAGAAGGC+TGG | + | chr4_4:54630761-54630780 | Msa0688540:CDS | 30.0% |
| AACGACCATGTATTTACAAT+AGG | + | chr4_4:54630801-54630820 | Msa0688540:CDS | 30.0% | |
| ! | GAATATATCAAAGGTGTGTT+TGG | + | chr4_4:54630888-54630907 | Msa0688540:three_prime_UTR | 30.0% |
| TGAACATGGTGAACATAATT+TGG | + | chr4_4:54628828-54628847 | Msa0688540:CDS | 30.0% | |
| GTGAACATAATTTGGTCATT+TGG | + | chr4_4:54628836-54628855 | Msa0688540:CDS | 30.0% | |
| ! | TAATTTGGTCATTTGGTAGT+TGG | + | chr4_4:54628843-54628862 | Msa0688540:CDS | 30.0% |
| !!! | GGCTTTGAAATAGTTTTAGA+TGG | - | chr4_4:54628941-54628960 | None:intergenic | 30.0% |
| TACAAGAGTCTTTGATTAGT+AGG | + | chr4_4:54629290-54629309 | Msa0688540:CDS | 30.0% | |
| ACAAGAGTCTTTGATTAGTA+GGG | + | chr4_4:54629291-54629310 | Msa0688540:CDS | 30.0% | |
| TTATTGCCATCTTCTATTGA+GGG | + | chr4_4:54629352-54629371 | Msa0688540:CDS | 30.0% | |
| !! | AAAAAATGATGGGTACATGT+AGG | + | chr4_4:54629947-54629966 | Msa0688540:intron | 30.0% |
| ! | GGTTTAAAACCTCAAAATTG+AGG | + | chr4_4:54629973-54629992 | Msa0688540:intron | 30.0% |
| !! | TGTTTTTACAATCATGGCTA+AGG | - | chr4_4:54630092-54630111 | None:intergenic | 30.0% |
| CCATAAATACCTATAGAGAT+GGG | - | chr4_4:54630115-54630134 | None:intergenic | 30.0% | |
| !!! | CTCTAACACTCTTTGTTTTA+CGG | + | chr4_4:54630409-54630428 | Msa0688540:intron | 30.0% |
| !!! | TCTAACACTCTTTGTTTTAC+GGG | + | chr4_4:54630410-54630429 | Msa0688540:intron | 30.0% |
| ! | TTTGAAGTAATAAAGAAGGC+TGG | + | chr4_4:54630761-54630780 | Msa0688540:CDS | 30.0% |
| AACGACCATGTATTTACAAT+AGG | + | chr4_4:54630801-54630820 | Msa0688540:CDS | 30.0% | |
| ! | GAATATATCAAAGGTGTGTT+TGG | + | chr4_4:54630888-54630907 | Msa0688540:three_prime_UTR | 30.0% |
| CTTAAAACATTGCAAAGCGA+AGG | + | chr4_4:54628764-54628783 | Msa0688540:five_prime_UTR | 35.0% | |
| ! | GTACCTGACCTAATTTTCTT+CGG | + | chr4_4:54629073-54629092 | Msa0688540:CDS | 35.0% |
| !!! | GTTTTGGTTGGATTCAGTTA+TGG | + | chr4_4:54629187-54629206 | Msa0688540:CDS | 35.0% |
| AGACTCTTGTATAGCCAAAA+CGG | - | chr4_4:54629281-54629300 | None:intergenic | 35.0% | |
| GTTATTGCCATCTTCTATTG+AGG | + | chr4_4:54629351-54629370 | Msa0688540:CDS | 35.0% | |
| TTCAATCCCTCAATAGAAGA+TGG | - | chr4_4:54629361-54629380 | None:intergenic | 35.0% | |
| ATCTTCTATTGAGGGATTGA+AGG | + | chr4_4:54629360-54629379 | Msa0688540:CDS | 35.0% | |
| AAATCATTGAGCAGGCAATT+GGG | - | chr4_4:54629424-54629443 | None:intergenic | 35.0% | |
| AAAATCATTGAGCAGGCAAT+TGG | - | chr4_4:54629425-54629444 | None:intergenic | 35.0% | |
| ! | CCTTTAGAAAATCATTGAGC+AGG | - | chr4_4:54629432-54629451 | None:intergenic | 35.0% |
| ! | CCTGCTCAATGATTTTCTAA+AGG | + | chr4_4:54629429-54629448 | Msa0688540:CDS | 35.0% |
| TCAAAATTGAGGGTCTGTAA+GGG | + | chr4_4:54629984-54630003 | Msa0688540:intron | 35.0% | |
| GGAAAAAAAACTCTCCAAAG+CGG | + | chr4_4:54630018-54630037 | Msa0688540:intron | 35.0% | |
| !! | AGCATTTTAGGTGGTGAAAA+AGG | + | chr4_4:54630055-54630074 | Msa0688540:intron | 35.0% |
| !! | GCATTTTAGGTGGTGAAAAA+GGG | + | chr4_4:54630056-54630075 | Msa0688540:intron | 35.0% |
| !! | CATTTTAGGTGGTGAAAAAG+GGG | + | chr4_4:54630057-54630076 | Msa0688540:intron | 35.0% |
| !! | GATGGGTGTTTTTACAATCA+TGG | - | chr4_4:54630098-54630117 | None:intergenic | 35.0% |
| GTAAAAACACCCATCTCTAT+AGG | + | chr4_4:54630103-54630122 | Msa0688540:intron | 35.0% | |
| CCCATCTCTATAGGTATTTA+TGG | + | chr4_4:54630112-54630131 | Msa0688540:intron | 35.0% | |
| GCCATAAATACCTATAGAGA+TGG | - | chr4_4:54630116-54630135 | None:intergenic | 35.0% | |
| ATAGGTATTTATGGCCACAA+TGG | + | chr4_4:54630121-54630140 | Msa0688540:intron | 35.0% | |
| TAGGTATTTATGGCCACAAT+GGG | + | chr4_4:54630122-54630141 | Msa0688540:intron | 35.0% | |
| TTTCCTATTAGAACCCATTG+TGG | - | chr4_4:54630138-54630157 | None:intergenic | 35.0% | |
| CTAATAGGAAAGAGCAAACT+AGG | + | chr4_4:54630147-54630166 | Msa0688540:intron | 35.0% | |
| ! | CAATGTCCCAAAATTTTCAC+AGG | + | chr4_4:54630364-54630383 | Msa0688540:CDS | 35.0% |
| ! | TGCAGCGAATACATCTTTTA+TGG | + | chr4_4:54630554-54630573 | Msa0688540:intron | 35.0% |
| ! | GCAGCGAATACATCTTTTAT+GGG | + | chr4_4:54630555-54630574 | Msa0688540:intron | 35.0% |
| ! | CAGCGAATACATCTTTTATG+GGG | + | chr4_4:54630556-54630575 | Msa0688540:intron | 35.0% |
| ! | AATAAAGAAGGCTGGTCATT+TGG | + | chr4_4:54630769-54630788 | Msa0688540:CDS | 35.0% |
| AGGCACCTATTGTAAATACA+TGG | - | chr4_4:54630809-54630828 | None:intergenic | 35.0% | |
| CTTAAAACATTGCAAAGCGA+AGG | + | chr4_4:54628764-54628783 | Msa0688540:five_prime_UTR | 35.0% | |
| ! | GTACCTGACCTAATTTTCTT+CGG | + | chr4_4:54629073-54629092 | Msa0688540:CDS | 35.0% |
| !!! | GTTTTGGTTGGATTCAGTTA+TGG | + | chr4_4:54629187-54629206 | Msa0688540:CDS | 35.0% |
| AGACTCTTGTATAGCCAAAA+CGG | - | chr4_4:54629281-54629300 | None:intergenic | 35.0% | |
| GTTATTGCCATCTTCTATTG+AGG | + | chr4_4:54629351-54629370 | Msa0688540:CDS | 35.0% | |
| TTCAATCCCTCAATAGAAGA+TGG | - | chr4_4:54629361-54629380 | None:intergenic | 35.0% | |
| ATCTTCTATTGAGGGATTGA+AGG | + | chr4_4:54629360-54629379 | Msa0688540:CDS | 35.0% | |
| AAATCATTGAGCAGGCAATT+GGG | - | chr4_4:54629424-54629443 | None:intergenic | 35.0% | |
| AAAATCATTGAGCAGGCAAT+TGG | - | chr4_4:54629425-54629444 | None:intergenic | 35.0% | |
| ! | CCTTTAGAAAATCATTGAGC+AGG | - | chr4_4:54629432-54629451 | None:intergenic | 35.0% |
| ! | CCTGCTCAATGATTTTCTAA+AGG | + | chr4_4:54629429-54629448 | Msa0688540:CDS | 35.0% |
| TCAAAATTGAGGGTCTGTAA+GGG | + | chr4_4:54629984-54630003 | Msa0688540:intron | 35.0% | |
| GGAAAAAAAACTCTCCAAAG+CGG | + | chr4_4:54630018-54630037 | Msa0688540:intron | 35.0% | |
| !! | AGCATTTTAGGTGGTGAAAA+AGG | + | chr4_4:54630055-54630074 | Msa0688540:intron | 35.0% |
| !! | GCATTTTAGGTGGTGAAAAA+GGG | + | chr4_4:54630056-54630075 | Msa0688540:intron | 35.0% |
| !! | CATTTTAGGTGGTGAAAAAG+GGG | + | chr4_4:54630057-54630076 | Msa0688540:intron | 35.0% |
| !! | GATGGGTGTTTTTACAATCA+TGG | - | chr4_4:54630098-54630117 | None:intergenic | 35.0% |
| GTAAAAACACCCATCTCTAT+AGG | + | chr4_4:54630103-54630122 | Msa0688540:intron | 35.0% | |
| CCCATCTCTATAGGTATTTA+TGG | + | chr4_4:54630112-54630131 | Msa0688540:intron | 35.0% | |
| GCCATAAATACCTATAGAGA+TGG | - | chr4_4:54630116-54630135 | None:intergenic | 35.0% | |
| ATAGGTATTTATGGCCACAA+TGG | + | chr4_4:54630121-54630140 | Msa0688540:intron | 35.0% | |
| TAGGTATTTATGGCCACAAT+GGG | + | chr4_4:54630122-54630141 | Msa0688540:intron | 35.0% | |
| TTTCCTATTAGAACCCATTG+TGG | - | chr4_4:54630138-54630157 | None:intergenic | 35.0% | |
| CTAATAGGAAAGAGCAAACT+AGG | + | chr4_4:54630147-54630166 | Msa0688540:intron | 35.0% | |
| ! | CAATGTCCCAAAATTTTCAC+AGG | + | chr4_4:54630364-54630383 | Msa0688540:CDS | 35.0% |
| ! | TGCAGCGAATACATCTTTTA+TGG | + | chr4_4:54630554-54630573 | Msa0688540:intron | 35.0% |
| ! | GCAGCGAATACATCTTTTAT+GGG | + | chr4_4:54630555-54630574 | Msa0688540:intron | 35.0% |
| ! | CAGCGAATACATCTTTTATG+GGG | + | chr4_4:54630556-54630575 | Msa0688540:intron | 35.0% |
| ! | AATAAAGAAGGCTGGTCATT+TGG | + | chr4_4:54630769-54630788 | Msa0688540:CDS | 35.0% |
| AGGCACCTATTGTAAATACA+TGG | - | chr4_4:54630809-54630828 | None:intergenic | 35.0% | |
| AGTTGGACGATGAAGAATGT+AGG | + | chr4_4:54628860-54628879 | Msa0688540:CDS | 40.0% | |
| AAGGTACACGTATGAGATTC+TGG | + | chr4_4:54628912-54628931 | Msa0688540:CDS | 40.0% | |
| AGGTACACGTATGAGATTCT+GGG | + | chr4_4:54628913-54628932 | Msa0688540:CDS | 40.0% | |
| AAACACTCTGCTTGAAAAGC+CGG | - | chr4_4:54629130-54629149 | None:intergenic | 40.0% | |
| CAGAGGGGTTAAAGAAACTT+GGG | + | chr4_4:54629152-54629171 | Msa0688540:CDS | 40.0% | |
| AGAGGGGTTAAAGAAACTTG+GGG | + | chr4_4:54629153-54629172 | Msa0688540:CDS | 40.0% | |
| !!! | GTGGAGAAATGTGTTTTGGT+TGG | + | chr4_4:54629175-54629194 | Msa0688540:CDS | 40.0% |
| TTGGTTGGATTCAGTTATGG+TGG | + | chr4_4:54629190-54629209 | Msa0688540:CDS | 40.0% | |
| ! | TGGATTCAGTTATGGTGGAA+TGG | + | chr4_4:54629195-54629214 | Msa0688540:CDS | 40.0% |
| ! | ATTCAGTTATGGTGGAATGG+TGG | + | chr4_4:54629198-54629217 | Msa0688540:CDS | 40.0% |
| ! | TGGAATGGTGGCGTTTAAAA+TGG | + | chr4_4:54629210-54629229 | Msa0688540:CDS | 40.0% |
| GTTCAAGCTGTAGTTGTAAC+TGG | + | chr4_4:54629253-54629272 | Msa0688540:CDS | 40.0% | |
| TGCTGGATTCTCTTCTTGTT+CGG | + | chr4_4:54629324-54629343 | Msa0688540:CDS | 40.0% | |
| ! | CTTACAGACCCTCAATTTTG+AGG | - | chr4_4:54629985-54630004 | None:intergenic | 40.0% |
| CTCAAAATTGAGGGTCTGTA+AGG | + | chr4_4:54629983-54630002 | Msa0688540:intron | 40.0% | |
| !!! | GATGAGATGGAGAGCATTTT+AGG | + | chr4_4:54630043-54630062 | Msa0688540:intron | 40.0% |
| TGCGCAGAACATAAAAGAGT+AGG | + | chr4_4:54630609-54630628 | Msa0688540:intron | 40.0% | |
| CGGAAGAAAGAAACTTCTTC+AGG | - | chr4_4:54630829-54630848 | None:intergenic | 40.0% | |
| AGTTGGACGATGAAGAATGT+AGG | + | chr4_4:54628860-54628879 | Msa0688540:CDS | 40.0% | |
| AAGGTACACGTATGAGATTC+TGG | + | chr4_4:54628912-54628931 | Msa0688540:CDS | 40.0% | |
| AGGTACACGTATGAGATTCT+GGG | + | chr4_4:54628913-54628932 | Msa0688540:CDS | 40.0% | |
| AAACACTCTGCTTGAAAAGC+CGG | - | chr4_4:54629130-54629149 | None:intergenic | 40.0% | |
| CAGAGGGGTTAAAGAAACTT+GGG | + | chr4_4:54629152-54629171 | Msa0688540:CDS | 40.0% | |
| AGAGGGGTTAAAGAAACTTG+GGG | + | chr4_4:54629153-54629172 | Msa0688540:CDS | 40.0% | |
| !!! | GTGGAGAAATGTGTTTTGGT+TGG | + | chr4_4:54629175-54629194 | Msa0688540:CDS | 40.0% |
| TTGGTTGGATTCAGTTATGG+TGG | + | chr4_4:54629190-54629209 | Msa0688540:CDS | 40.0% | |
| ! | TGGATTCAGTTATGGTGGAA+TGG | + | chr4_4:54629195-54629214 | Msa0688540:CDS | 40.0% |
| ! | ATTCAGTTATGGTGGAATGG+TGG | + | chr4_4:54629198-54629217 | Msa0688540:CDS | 40.0% |
| ! | TGGAATGGTGGCGTTTAAAA+TGG | + | chr4_4:54629210-54629229 | Msa0688540:CDS | 40.0% |
| GTTCAAGCTGTAGTTGTAAC+TGG | + | chr4_4:54629253-54629272 | Msa0688540:CDS | 40.0% | |
| TGCTGGATTCTCTTCTTGTT+CGG | + | chr4_4:54629324-54629343 | Msa0688540:CDS | 40.0% | |
| ! | CTTACAGACCCTCAATTTTG+AGG | - | chr4_4:54629985-54630004 | None:intergenic | 40.0% |
| CTCAAAATTGAGGGTCTGTA+AGG | + | chr4_4:54629983-54630002 | Msa0688540:intron | 40.0% | |
| !!! | GATGAGATGGAGAGCATTTT+AGG | + | chr4_4:54630043-54630062 | Msa0688540:intron | 40.0% |
| TGCGCAGAACATAAAAGAGT+AGG | + | chr4_4:54630609-54630628 | Msa0688540:intron | 40.0% | |
| CGGAAGAAAGAAACTTCTTC+AGG | - | chr4_4:54630829-54630848 | None:intergenic | 40.0% | |
| TGTACCTTGCTCTATCTCCA+CGG | - | chr4_4:54628900-54628919 | None:intergenic | 45.0% | |
| ! | CCTGACCTAATTTTCTTCGG+CGG | + | chr4_4:54629076-54629095 | Msa0688540:CDS | 45.0% |
| !! | GGCTTTTCAAGCAGAGTGTT+TGG | + | chr4_4:54629129-54629148 | Msa0688540:CDS | 45.0% |
| GCAGAGGGGTTAAAGAAACT+TGG | + | chr4_4:54629151-54629170 | Msa0688540:CDS | 45.0% | |
| ! | TGGGGTGGAGAAATGTGTTT+TGG | + | chr4_4:54629171-54629190 | Msa0688540:CDS | 45.0% |
| ! | GGCTGAGCTTTATAGTGATC+TGG | + | chr4_4:54629231-54629250 | Msa0688540:CDS | 45.0% |
| !! | AGTTGTAACTGGCTCCGTTT+TGG | + | chr4_4:54629264-54629283 | Msa0688540:CDS | 45.0% |
| GTCTTTGATTAGTAGGGCAG+TGG | + | chr4_4:54629297-54629316 | Msa0688540:CDS | 45.0% | |
| !! | ATGATGGGTACATGTAGGAC+CGG | + | chr4_4:54629952-54629971 | Msa0688540:intron | 45.0% |
| AATTGAGGGTCTGTAAGGGA+TGG | + | chr4_4:54629988-54630007 | Msa0688540:intron | 45.0% | |
| ATTGAGGGTCTGTAAGGGAT+GGG | + | chr4_4:54629989-54630008 | Msa0688540:intron | 45.0% | |
| TCTGTAAGGGATGGGTACAT+TGG | + | chr4_4:54629997-54630016 | Msa0688540:intron | 45.0% | |
| !!! | GAGATGGAGAGCATTTTAGG+TGG | + | chr4_4:54630046-54630065 | Msa0688540:intron | 45.0% |
| ! | TGGCCACAATGGGTTCTAAT+AGG | + | chr4_4:54630132-54630151 | Msa0688540:intron | 45.0% |
| TGCAGGTGATGTTCTCGAAT+AGG | + | chr4_4:54630291-54630310 | Msa0688540:intron | 45.0% | |
| GGTGATGTTCTCGAATAGGA+AGG | + | chr4_4:54630295-54630314 | Msa0688540:intron | 45.0% | |
| TTTATGTTCTGCGCAACCTC+TGG | - | chr4_4:54630604-54630623 | None:intergenic | 45.0% | |
| GATGCATATATCAGGACGCT+AGG | + | chr4_4:54630725-54630744 | Msa0688540:intron | 45.0% | |
| TGTACCTTGCTCTATCTCCA+CGG | - | chr4_4:54628900-54628919 | None:intergenic | 45.0% | |
| ! | CCTGACCTAATTTTCTTCGG+CGG | + | chr4_4:54629076-54629095 | Msa0688540:CDS | 45.0% |
| !! | GGCTTTTCAAGCAGAGTGTT+TGG | + | chr4_4:54629129-54629148 | Msa0688540:CDS | 45.0% |
| GCAGAGGGGTTAAAGAAACT+TGG | + | chr4_4:54629151-54629170 | Msa0688540:CDS | 45.0% | |
| ! | TGGGGTGGAGAAATGTGTTT+TGG | + | chr4_4:54629171-54629190 | Msa0688540:CDS | 45.0% |
| ! | GGCTGAGCTTTATAGTGATC+TGG | + | chr4_4:54629231-54629250 | Msa0688540:CDS | 45.0% |
| !! | AGTTGTAACTGGCTCCGTTT+TGG | + | chr4_4:54629264-54629283 | Msa0688540:CDS | 45.0% |
| GTCTTTGATTAGTAGGGCAG+TGG | + | chr4_4:54629297-54629316 | Msa0688540:CDS | 45.0% | |
| !! | ATGATGGGTACATGTAGGAC+CGG | + | chr4_4:54629952-54629971 | Msa0688540:intron | 45.0% |
| AATTGAGGGTCTGTAAGGGA+TGG | + | chr4_4:54629988-54630007 | Msa0688540:intron | 45.0% | |
| ATTGAGGGTCTGTAAGGGAT+GGG | + | chr4_4:54629989-54630008 | Msa0688540:intron | 45.0% | |
| TCTGTAAGGGATGGGTACAT+TGG | + | chr4_4:54629997-54630016 | Msa0688540:intron | 45.0% | |
| !!! | GAGATGGAGAGCATTTTAGG+TGG | + | chr4_4:54630046-54630065 | Msa0688540:intron | 45.0% |
| ! | TGGCCACAATGGGTTCTAAT+AGG | + | chr4_4:54630132-54630151 | Msa0688540:intron | 45.0% |
| TGCAGGTGATGTTCTCGAAT+AGG | + | chr4_4:54630291-54630310 | Msa0688540:intron | 45.0% | |
| GGTGATGTTCTCGAATAGGA+AGG | + | chr4_4:54630295-54630314 | Msa0688540:intron | 45.0% | |
| TTTATGTTCTGCGCAACCTC+TGG | - | chr4_4:54630604-54630623 | None:intergenic | 45.0% | |
| GATGCATATATCAGGACGCT+AGG | + | chr4_4:54630725-54630744 | Msa0688540:intron | 45.0% | |
| !! | ATTATATAAAAAAAAAATGA+TGG | + | chr4_4:54629936-54629955 | Msa0688540:intron | 5.0% |
| !! | TTATATAAAAAAAAAATGAT+GGG | + | chr4_4:54629937-54629956 | Msa0688540:intron | 5.0% |
| !! | ATTATATAAAAAAAAAATGA+TGG | + | chr4_4:54629936-54629955 | Msa0688540:intron | 5.0% |
| !! | TTATATAAAAAAAAAATGAT+GGG | + | chr4_4:54629937-54629956 | Msa0688540:intron | 5.0% |
| AGGTGTGAAGCTTTACACCG+TGG | + | chr4_4:54628880-54628899 | Msa0688540:CDS | 50.0% | |
| TACACCGTGGAGATAGAGCA+AGG | + | chr4_4:54628893-54628912 | Msa0688540:CDS | 50.0% | |
| !! | GGCTTGATGGACTTGGACTT+GGG | - | chr4_4:54628962-54628981 | None:intergenic | 50.0% |
| !! | TGGCTTGATGGACTTGGACT+TGG | - | chr4_4:54628963-54628982 | None:intergenic | 50.0% |
| !! | CGGTGATGGACTTGCAACAT+GGG | + | chr4_4:54629009-54629028 | Msa0688540:CDS | 50.0% |
| CCGCCGAAGAAAATTAGGTC+AGG | - | chr4_4:54629079-54629098 | None:intergenic | 50.0% | |
| TGGAGCCGCCGAAGAAAATT+AGG | - | chr4_4:54629084-54629103 | None:intergenic | 50.0% | |
| TCGGTCGGGCTTATCAGTTA+TGG | - | chr4_4:54629104-54629123 | None:intergenic | 50.0% | |
| TTGAAAAGCCGGTGATCGGT+CGG | - | chr4_4:54629119-54629138 | None:intergenic | 50.0% | |
| CTGCTTGAAAAGCCGGTGAT+CGG | - | chr4_4:54629123-54629142 | None:intergenic | 50.0% | |
| ! | TCAAGCAGAGTGTTTGGCAG+AGG | + | chr4_4:54629135-54629154 | Msa0688540:CDS | 50.0% |
| ! | CAAGCAGAGTGTTTGGCAGA+GGG | + | chr4_4:54629136-54629155 | Msa0688540:CDS | 50.0% |
| ! | AAGCAGAGTGTTTGGCAGAG+GGG | + | chr4_4:54629137-54629156 | Msa0688540:CDS | 50.0% |
| GGGGTTAAAGAAACTTGGGG+TGG | + | chr4_4:54629156-54629175 | Msa0688540:CDS | 50.0% | |
| CTCCAAAGCGGATGATGAGA+TGG | + | chr4_4:54630030-54630049 | Msa0688540:intron | 50.0% | |
| CTCCATCTCATCATCCGCTT+TGG | - | chr4_4:54630035-54630054 | None:intergenic | 50.0% | |
| TAGGTGGTGAAAAAGGGGAG+TGG | + | chr4_4:54630062-54630081 | Msa0688540:intron | 50.0% | |
| GGAGCGAAGTGAGCTATTAG+AGG | + | chr4_4:54630316-54630335 | Msa0688540:CDS | 50.0% | |
| AGGTGTGAAGCTTTACACCG+TGG | + | chr4_4:54628880-54628899 | Msa0688540:CDS | 50.0% | |
| TACACCGTGGAGATAGAGCA+AGG | + | chr4_4:54628893-54628912 | Msa0688540:CDS | 50.0% | |
| !! | GGCTTGATGGACTTGGACTT+GGG | - | chr4_4:54628962-54628981 | None:intergenic | 50.0% |
| !! | TGGCTTGATGGACTTGGACT+TGG | - | chr4_4:54628963-54628982 | None:intergenic | 50.0% |
| !! | CGGTGATGGACTTGCAACAT+GGG | + | chr4_4:54629009-54629028 | Msa0688540:CDS | 50.0% |
| CCGCCGAAGAAAATTAGGTC+AGG | - | chr4_4:54629079-54629098 | None:intergenic | 50.0% | |
| TGGAGCCGCCGAAGAAAATT+AGG | - | chr4_4:54629084-54629103 | None:intergenic | 50.0% | |
| TCGGTCGGGCTTATCAGTTA+TGG | - | chr4_4:54629104-54629123 | None:intergenic | 50.0% | |
| TTGAAAAGCCGGTGATCGGT+CGG | - | chr4_4:54629119-54629138 | None:intergenic | 50.0% | |
| CTGCTTGAAAAGCCGGTGAT+CGG | - | chr4_4:54629123-54629142 | None:intergenic | 50.0% | |
| ! | TCAAGCAGAGTGTTTGGCAG+AGG | + | chr4_4:54629135-54629154 | Msa0688540:CDS | 50.0% |
| ! | CAAGCAGAGTGTTTGGCAGA+GGG | + | chr4_4:54629136-54629155 | Msa0688540:CDS | 50.0% |
| ! | AAGCAGAGTGTTTGGCAGAG+GGG | + | chr4_4:54629137-54629156 | Msa0688540:CDS | 50.0% |
| GGGGTTAAAGAAACTTGGGG+TGG | + | chr4_4:54629156-54629175 | Msa0688540:CDS | 50.0% | |
| CTCCAAAGCGGATGATGAGA+TGG | + | chr4_4:54630030-54630049 | Msa0688540:intron | 50.0% | |
| CTCCATCTCATCATCCGCTT+TGG | - | chr4_4:54630035-54630054 | None:intergenic | 50.0% | |
| TAGGTGGTGAAAAAGGGGAG+TGG | + | chr4_4:54630062-54630081 | Msa0688540:intron | 50.0% | |
| GGAGCGAAGTGAGCTATTAG+AGG | + | chr4_4:54630316-54630335 | Msa0688540:CDS | 50.0% | |
| GTCCAAGTCCATCAAGCCAG+TGG | + | chr4_4:54628964-54628983 | Msa0688540:CDS | 55.0% | |
| !! | CACCACTGGCTTGATGGACT+TGG | - | chr4_4:54628969-54628988 | None:intergenic | 55.0% |
| CAAGTCCATCAAGCCAGTGG+TGG | + | chr4_4:54628967-54628986 | Msa0688540:CDS | 55.0% | |
| !! | GAGAACCACCACTGGCTTGA+TGG | - | chr4_4:54628975-54628994 | None:intergenic | 55.0% |
| !! | GCGGTGATGGACTTGCAACA+TGG | + | chr4_4:54629008-54629027 | Msa0688540:CDS | 55.0% |
| TGATAAGCCCGACCGATCAC+CGG | + | chr4_4:54629108-54629127 | Msa0688540:CDS | 55.0% | |
| TGAAAAGCCGGTGATCGGTC+GGG | - | chr4_4:54629118-54629137 | None:intergenic | 55.0% | |
| AGTAGGGCAGTGGAAGATGC+TGG | + | chr4_4:54629307-54629326 | Msa0688540:CDS | 55.0% | |
| ! | GGCTGGTCATTTGGCTCATC+TGG | + | chr4_4:54630778-54630797 | Msa0688540:CDS | 55.0% |
| GTCCAAGTCCATCAAGCCAG+TGG | + | chr4_4:54628964-54628983 | Msa0688540:CDS | 55.0% | |
| !! | CACCACTGGCTTGATGGACT+TGG | - | chr4_4:54628969-54628988 | None:intergenic | 55.0% |
| CAAGTCCATCAAGCCAGTGG+TGG | + | chr4_4:54628967-54628986 | Msa0688540:CDS | 55.0% | |
| !! | GAGAACCACCACTGGCTTGA+TGG | - | chr4_4:54628975-54628994 | None:intergenic | 55.0% |
| !! | GCGGTGATGGACTTGCAACA+TGG | + | chr4_4:54629008-54629027 | Msa0688540:CDS | 55.0% |
| TGATAAGCCCGACCGATCAC+CGG | + | chr4_4:54629108-54629127 | Msa0688540:CDS | 55.0% | |
| TGAAAAGCCGGTGATCGGTC+GGG | - | chr4_4:54629118-54629137 | None:intergenic | 55.0% | |
| AGTAGGGCAGTGGAAGATGC+TGG | + | chr4_4:54629307-54629326 | Msa0688540:CDS | 55.0% | |
| ! | GGCTGGTCATTTGGCTCATC+TGG | + | chr4_4:54630778-54630797 | Msa0688540:CDS | 55.0% |
| CCAGTGGTGGTTCTCCTCCA+CGG | + | chr4_4:54628980-54628999 | Msa0688540:CDS | 60.0% | |
| GTTCTCCTCCACGGCTTCTG+CGG | + | chr4_4:54628989-54629008 | Msa0688540:CDS | 60.0% | |
| CCAGTGGTGGTTCTCCTCCA+CGG | + | chr4_4:54628980-54628999 | Msa0688540:CDS | 60.0% | |
| GTTCTCCTCCACGGCTTCTG+CGG | + | chr4_4:54628989-54629008 | Msa0688540:CDS | 60.0% | |
| CCGTGGAGGAGAACCACCAC+TGG | - | chr4_4:54628983-54629002 | None:intergenic | 65.0% | |
| CATCACCGCAGAAGCCGTGG+AGG | - | chr4_4:54628997-54629016 | None:intergenic | 65.0% | |
| CTCCACGGCTTCTGCGGTGA+TGG | + | chr4_4:54628995-54629014 | Msa0688540:CDS | 65.0% | |
| GTCCATCACCGCAGAAGCCG+TGG | - | chr4_4:54629000-54629019 | None:intergenic | 65.0% | |
| CCGTGGAGGAGAACCACCAC+TGG | - | chr4_4:54628983-54629002 | None:intergenic | 65.0% | |
| CATCACCGCAGAAGCCGTGG+AGG | - | chr4_4:54628997-54629016 | None:intergenic | 65.0% | |
| CTCCACGGCTTCTGCGGTGA+TGG | + | chr4_4:54628995-54629014 | Msa0688540:CDS | 65.0% | |
| GTCCATCACCGCAGAAGCCG+TGG | - | chr4_4:54629000-54629019 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 54628753 | 54631014 | 54628753 | ID=Msa0688540;Name=Msa0688540 |
| chr4_4 | mRNA | 54628753 | 54631014 | 54628753 | ID=Msa0688540-mRNA-1;Parent=Msa0688540;Name=Msa0688540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=71|1|1|1|1|1|4|143|305 |
| chr4_4 | exon | 54628753 | 54629450 | 54628753 | ID=Msa0688540-mRNA-1:exon:14364;Parent=Msa0688540-mRNA-1 |
| chr4_4 | exon | 54630296 | 54630385 | 54630296 | ID=Msa0688540-mRNA-1:exon:14365;Parent=Msa0688540-mRNA-1 |
| chr4_4 | exon | 54630559 | 54630626 | 54630559 | ID=Msa0688540-mRNA-1:exon:14366;Parent=Msa0688540-mRNA-1 |
| chr4_4 | exon | 54630739 | 54631014 | 54630739 | ID=Msa0688540-mRNA-1:exon:14367;Parent=Msa0688540-mRNA-1 |
| chr4_4 | five_prime_UTR | 54628753 | 54628823 | 54628753 | ID=Msa0688540-mRNA-1:five_prime_utr;Parent=Msa0688540-mRNA-1 |
| chr4_4 | CDS | 54628824 | 54629450 | 54628824 | ID=Msa0688540-mRNA-1:cds;Parent=Msa0688540-mRNA-1 |
| chr4_4 | CDS | 54630296 | 54630385 | 54630296 | ID=Msa0688540-mRNA-1:cds;Parent=Msa0688540-mRNA-1 |
| chr4_4 | CDS | 54630559 | 54630626 | 54630559 | ID=Msa0688540-mRNA-1:cds;Parent=Msa0688540-mRNA-1 |
| chr4_4 | CDS | 54630739 | 54630871 | 54630739 | ID=Msa0688540-mRNA-1:cds;Parent=Msa0688540-mRNA-1 |
| chr4_4 | three_prime_UTR | 54630872 | 54631014 | 54630872 | ID=Msa0688540-mRNA-1:three_prime_utr;Parent=Msa0688540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
