AlfalfaGEDB | MS.gene066263

M. sativa cultivar XinJiangDaYe / MS.gene066263

KEGG: -
GO: -
PFAM: PF10063.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066263.t1	RHN81739.1	96.2	286	8	1	1	286	21	303	2.80E-145	524.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066263.t1	G7IDX3	96.2	286	8	1	1	286	1	283	2.0e-145	524.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene066263	0.896382	3.89E-76	-1.69E-46
MS.gene049173	MS.gene066263	0.854467	1.21E-61	-1.69E-46
MS.gene049217	MS.gene066263	0.859212	4.84E-63	-1.69E-46
MS.gene049222	MS.gene066263	0.89295	9.89E-75	-1.69E-46
MS.gene049232	MS.gene066263	0.861128	1.27E-63	-1.69E-46
MS.gene049285	MS.gene066263	0.898634	4.38E-77	-1.69E-46
MS.gene049320	MS.gene066263	0.884111	2.53E-71	-1.69E-46
MS.gene04939	MS.gene066263	0.858717	6.80E-63	-1.69E-46
MS.gene049427	MS.gene066263	0.808238	3.42E-50	-1.69E-46
MS.gene049609	MS.gene066263	0.834725	2.54E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066263.t1	MTR_1g099520	96.154	286	8	1	1	286	1	283	0.0	551

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066263.t1	AT1G28140	72.177	248	62	2	43	283	31	278	1.06e-118	342

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Find 79 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGCAGTCCGGTTTGA+TGG	0.360898	1.1:-71687373	MS.gene066263:intron
AACCAACAACAAGTTTATAA+CGG	0.529478	1.1:-71689177	MS.gene066263:CDS
AACTTACTTTGCTTGCGTTA+TGG	0.311852	1.1:-71687338	MS.gene066263:CDS
AAGTTTATGTCTTGGCGGTC+GGG	0.403259	1.1:-71689253	MS.gene066263:CDS
AATTCGAACAAGATTAGAAA+TGG	0.436512	1.1:+71689284	None:intergenic
ACCGACCCAATTCTGATTCT+CGG	0.410553	1.1:+71689222	None:intergenic
ACTTAGGTCACCGGGCAAAT+AGG	0.361128	1.1:+71688406	None:intergenic
ACTTTGCTTGCGTTATGGAT+GGG	0.501479	1.1:-71687333	MS.gene066263:CDS
AGATGTCCGAGAAGAAGAAT+GGG	0.525851	1.1:+71687954	None:intergenic
AGCGCACTCTGCAAGCATTA+TGG	0.246210	1.1:-71688286	MS.gene066263:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAACCATATATGCTA+TGG	+	chr1.1:71688573-71688592	None:intergenic	30.0%
ATACTAACTAACACGTGATA+AGG	+	chr1.1:71687372-71687391	None:intergenic	30.0%
ATAGTTAGCATTGCATACAT+AGG	+	chr1.1:71687936-71687955	None:intergenic	30.0%
ATTATTCCCATTCTTCTTCT+CGG	-	chr1.1:71688477-71688496	MS.gene066263:intron	30.0%
CTATTATTTATTTGAGTCCG+TGG	-	chr1.1:71688896-71688915	MS.gene066263:intron	30.0%
GGGAAAAGGAATTACAATAA+TGG	+	chr1.1:71687505-71687524	None:intergenic	30.0%
GTGTCTCTTAAAAATAGGAT+CGG	-	chr1.1:71687773-71687792	MS.gene066263:intron	30.0%
TAGTTAGCATTGCATACATA+GGG	+	chr1.1:71687935-71687954	None:intergenic	30.0%
TCATCTTGTATTCTTGAAAC+AGG	-	chr1.1:71688414-71688433	MS.gene066263:CDS	30.0%
TCTTAAAAATAGGATCGGAT+CGG	-	chr1.1:71687778-71687797	MS.gene066263:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	71687095	71689364	71687095	ID=MS.gene066263
chr1.1	mRNA	71687095	71689364	71687095	ID=MS.gene066263.t1;Parent=MS.gene066263
chr1.1	exon	71689134	71689364	71689134	ID=MS.gene066263.t1.exon1;Parent=MS.gene066263.t1
chr1.1	CDS	71689134	71689364	71689134	ID=cds.MS.gene066263.t1;Parent=MS.gene066263.t1
chr1.1	exon	71688135	71688492	71688135	ID=MS.gene066263.t1.exon2;Parent=MS.gene066263.t1
chr1.1	CDS	71688135	71688492	71688135	ID=cds.MS.gene066263.t1;Parent=MS.gene066263.t1
chr1.1	exon	71687953	71688023	71687953	ID=MS.gene066263.t1.exon3;Parent=MS.gene066263.t1
chr1.1	CDS	71687953	71688023	71687953	ID=cds.MS.gene066263.t1;Parent=MS.gene066263.t1
chr1.1	exon	71687287	71687385	71687287	ID=MS.gene066263.t1.exon4;Parent=MS.gene066263.t1
chr1.1	CDS	71687287	71687385	71687287	ID=cds.MS.gene066263.t1;Parent=MS.gene066263.t1
chr1.1	exon	71687095	71687196	71687095	ID=MS.gene066263.t1.exon5;Parent=MS.gene066263.t1
chr1.1	CDS	71687095	71687196	71687095	ID=cds.MS.gene066263.t1;Parent=MS.gene066263.t1

Gene Sequence

>MS.gene066263

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTCCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTACTCACCTTCTCCTCAATCAATTTCTGTTATAAGCTTGTTACCTTATCACGTGTTAGTTAGTATTGAAAGGTTAGATAGCTTATAAGAATATCATTCCTTCTGTTTTCTAAATTCAGTTATAGTAGTTGAGTACTTGATTTAGTTTCATCACACTCAACTCGTATATAATATAACCATTATTGTAATTCCTTTTCCCTTATGGAGTAATAACAATTTGATACGACCCAATTCGAGTAGAGTCAGGCTAACTCATTTAGAAGCTTTTAATTAATTATTGACAACTTTAGGACTCAATTACAAGTTTTTTAATTCAATGTCATATTTAAGATCAACTATACCTACTCCCATTGGTCATATTTATATTTTTAAGAGACATTTGGATCAACAAAAGTTAATATACCTGATTCAAAATTTGGACCAGATACATCAACTTTTGTGACTTAAGTGTCTCTTAAAAATAGGATCGGATCGGAGAGAGTATTATTGAATATTAACGAATATTTTTTGTATAGTTGAAAACACAGTCAGTCCCTGCAAACACAGTGTAGTGTGTGTGTGTGTGTGTATTACCTATACAGTTGCAGCTTAAAAGCTTTTGGCTTACCCTATGTATGCAATGCTAACTATGCCCATGGCAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCGGTGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGTGATGCTCTATTAAATCCATCTATTTTTATTTTTACCATTTAATATTAATTCAATAGAGAAGGGAAAAAATCGTTAACTGTATTGATATCATCTTGTATTCTTGAAACAGGACTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCCATTCTTCTTCTCGGACATCTGGTATTCTTCTTTTGTTCCTCTAAAGTGCTCTATTAAACATGTTGCCTATTTAATTTAAGGTAGCCATAGCATATATGGTTCTTGTTTTTTTTTCTTTTCAATTAGTTAAGGAGTTGGATTCACTGATTTCAAATTATGACATAATTATCAAAATCATGAGAATGGAATTTTTTTTCGATGAAGATCTAATGGTTCATATTTCAACTTCAGTGAATATAGTGTATCCAGAACCCAAATTCTTTCTAGCCCTGCAACATATCCAACAACCTAGTGGGGTGGACCAATCTGCAGGGCTGCAGATGATCCTTATTGCTAGTAACAGCCTCCTATCATGATTGCACTTATCTCATTTCCCTGAATTGATAACCGTTATCATATTTCTTTTGATGCTATTATTTATTTGAGTCCGTGGATTTTCCATCGTCCTCTTGACTCTTAAATTATTGTACATTTGCACCGCATTTCGTTTACCTTCACCGATCAAGAAGTGAGTGTGGATTGTTATTGTCACCAATACCGATTGGTCCATTTGTATAATATCTTTTTCTTTTACTCTAAAATTTGCAGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCGTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGTAAATTACTTATGATGATTTTGTTCTTGAAATTAATATCTTCATTCCCCGCATAAATTCCCTGATATTGGATTTGTGTTTAATATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>MS.gene066263.t1

MALQGLSTVSVAVSISVRPSISNLVRIPSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPGDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY