AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023332.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023332.01.T02 MTR_8g096960 86.294 197 16 3 1 188 5 199 2.79e-103 300
MsG0480023332.01.T01 MTR_8g096960 82.840 169 15 3 1 155 1 169 5.13e-83 246
MsG0480023332.01.T03 MTR_8g096960 82.915 199 19 4 1 184 1 199 5.71e-100 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023332.01.T02 AT2G32500 55.801 181 74 4 20 195 6 185 4.44e-61 191
MsG0480023332.01.T02 AT2G32500 55.801 181 74 4 20 195 6 185 3.26e-60 190
MsG0480023332.01.T01 AT2G32500 54.861 144 54 3 23 155 5 148 1.38e-47 154
MsG0480023332.01.T01 AT2G32500 55.245 143 53 3 24 155 6 148 6.72e-47 154
MsG0480023332.01.T03 AT2G32500 55.556 180 68 4 24 191 6 185 4.31e-60 188
MsG0480023332.01.T03 AT2G32500 55.556 180 68 4 24 191 6 185 2.22e-59 188

Find 111 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACGGACCTTTACTGATTT+TGG 0.106637 4:-83851956 MsG0480023332.01.T01:three_prime_UTR
TCCTTACATCTTTATATTCT+TGG 0.165785 4:+83850339 None:intergenic
GGACCACCTTAATTTCATTT+AGG 0.167375 4:-83851668 MsG0480023332.01.T01:three_prime_UTR
AGTAGATTTGATGGGTTATT+TGG 0.191611 4:-83851563 MsG0480023332.01.T01:three_prime_UTR
GAGAAAACAAAGGGTAATTT+TGG 0.208453 4:-83851095 MsG0480023332.01.T01:three_prime_UTR
TTATTAGTCAACGTAATTAA+TGG 0.208701 4:-83851437 MsG0480023332.01.T01:three_prime_UTR
TAATACCACCCATTTGATAT+TGG 0.215952 4:+83852769 None:intergenic
GAAAATGAGAAGAGAGAAAT+AGG 0.224647 4:-83851626 MsG0480023332.01.T01:three_prime_UTR
AATGAAGAGACAGTGATTTC+AGG 0.265594 4:+83850112 None:intergenic
CTTGAGAACCTTCAAGTAAA+AGG 0.266883 4:+83852085 None:intergenic
GATTTATGAGAGAGAGAAAT+AGG 0.274714 4:+83850917 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 4:+83853050 None:intergenic
TTCCTATATACTTCAGTCTT+AGG 0.280565 4:-83850739 MsG0480023332.01.T01:three_prime_UTR
GACCACCTTAATTTCATTTA+GGG 0.282509 4:-83851667 MsG0480023332.01.T01:three_prime_UTR
ACACACCCTAAATGAAATTA+AGG 0.286077 4:+83851662 None:intergenic
CATAGTTGCTCCTGGGTTCT+AGG 0.292178 4:-83850768 MsG0480023332.01.T01:three_prime_UTR
GGTATTATTGCTATTTCATT+AGG 0.307379 4:-83852753 MsG0480023332.01.T01:intron
AATACCACCCATTTGATATT+GGG 0.311535 4:+83852770 None:intergenic
AATTTCATTTAGGGTGTGTT+TGG 0.331172 4:-83851658 MsG0480023332.01.T01:three_prime_UTR
CAGTTGCTAGCACGCTTCTT+TGG 0.350656 4:-83850847 MsG0480023332.01.T01:three_prime_UTR
AATGTTGTATTTCTTCAGTT+TGG 0.354328 4:+83850960 None:intergenic
TTAGTACTCACTCTCTTCAT+TGG 0.359065 4:-83851744 MsG0480023332.01.T01:three_prime_UTR
GTAGAAAAGCTGCGAGCATT+TGG 0.374035 4:+83849980 None:intergenic
TCATCTGATTCTTCTTTGGT+TGG 0.376105 4:+83853054 None:intergenic
TTTCAACTTGCCAGTGGAAT+GGG 0.382728 4:-83853085 MsG0480023332.01.T01:intron
TTTCCTCTGATAAGCGAGAT+TGG 0.384256 4:+83853001 None:intergenic
GAGAAATATAGTAGATTTGA+TGG 0.384865 4:-83851572 MsG0480023332.01.T01:three_prime_UTR
TCAATTTATCGATCCATAAG+AGG 0.391651 4:+83851846 None:intergenic
CCTTTACCTTTACCTTTACA+AGG 0.398863 4:-83853183 MsG0480023332.01.T01:intron
TGTCTGCCACTTGAAGTATA+TGG 0.403988 4:+83850020 None:intergenic
AATCTGCTGCCCCTAGGTTA+TGG 0.412077 4:+83850824 None:intergenic
GATAAGCGAGATTGGAGCTT+TGG 0.414590 4:+83853009 None:intergenic
GTACACAACCCAATATCAAA+TGG 0.421767 4:-83852778 MsG0480023332.01.T01:CDS
TTGGAAGATACAGAATAAAC+AGG 0.421807 4:-83851076 MsG0480023332.01.T01:three_prime_UTR
TTTGTTTACTTATTAATGGT+TGG 0.423756 4:-83851413 MsG0480023332.01.T01:three_prime_UTR
TTTCTCATTAACACTGTGTT+TGG 0.430270 4:+83850887 None:intergenic
TTGACTAATAGCAGCTATAG+TGG 0.432826 4:+83850641 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 4:+83850120 None:intergenic
TCATGTGCTGGCATAACAAA+TGG 0.442272 4:-83851123 MsG0480023332.01.T01:three_prime_UTR
AGCAGCTATAGTGGCGCAAT+AGG 0.443124 4:+83850650 None:intergenic
ATCCTAAGACTGAAGTATAT+AGG 0.448835 4:+83850737 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 4:-83850093 MsG0480023332.01.T01:three_prime_UTR
AAAGGTAAAGATAGAGGTGT+TGG 0.454888 4:+83853201 None:intergenic
ATCTCGCTTATCAGAGGAAA+AGG 0.455399 4:-83852998 MsG0480023332.01.T01:intron
AAAATGAACATAGTTGCTCC+TGG 0.455761 4:-83850776 MsG0480023332.01.T01:three_prime_UTR
AAGGTAAAGATAGAGGTGTT+GGG 0.456800 4:+83853202 None:intergenic
ATAAGTGAGTTAATGTATGC+AGG 0.471718 4:+83851254 None:intergenic
AAAGGTAAAGGTAAAGATAG+AGG 0.480721 4:+83853195 None:intergenic
GGCTCTTGAACCCATTCCAC+TGG 0.483835 4:+83853075 None:intergenic
TCATTTCTCTGTTGATCCAG+TGG 0.484155 4:-83850094 MsG0480023332.01.T01:three_prime_UTR
CGCTTCTTTGGCCATAACCT+AGG 0.486301 4:-83850835 MsG0480023332.01.T01:three_prime_UTR
GCTTCTTTGGCCATAACCTA+GGG 0.487258 4:-83850834 MsG0480023332.01.T01:three_prime_UTR
TTTACATGTTGGTGCATACA+TGG 0.488043 4:+83852042 None:intergenic
GTAATAGATCCCACATTAAG+TGG 0.492120 4:+83851700 None:intergenic
ATTAACACTGTGTTTGGTAG+AGG 0.497551 4:+83850893 None:intergenic
TACACAACCCAATATCAAAT+GGG 0.498209 4:-83852777 MsG0480023332.01.T01:CDS
CATACGGTATTATCATGTGC+TGG 0.501256 4:-83851135 MsG0480023332.01.T01:three_prime_UTR
TCCGTGTCAAAACGTTCATA+AGG 0.508554 4:+83851972 None:intergenic
GGTATAATGCTACAGTCCAC+TGG 0.508922 4:+83850569 None:intergenic
AACTGACCTTGTAAAGGTAA+AGG 0.509076 4:+83853177 None:intergenic
ACAGCATGAGTATAGTGGTC+AGG 0.516130 4:+83852158 None:intergenic
TACATAAGCTCGGTTCCCAC+TGG 0.518561 4:+83850078 None:intergenic
TGTAAACAGCATGAGTATAG+TGG 0.519619 4:+83852153 None:intergenic
TACTTGCCATATACTTCAAG+TGG 0.529494 4:-83850026 MsG0480023332.01.T01:three_prime_UTR
CCTTGTAAAGGTAAAGGTAA+AGG 0.533984 4:+83853183 None:intergenic
CAATTCATATTTGACCATAG+AGG 0.534145 4:-83851800 MsG0480023332.01.T01:three_prime_UTR
CTACTCCATGAGTATACTCC+TGG 0.538053 4:+83850498 None:intergenic
GTGGGATCTATTACAAAGTG+TGG 0.539295 4:-83851691 MsG0480023332.01.T01:three_prime_UTR
GTGGATCCCACCACTTAATG+TGG 0.540812 4:-83851710 MsG0480023332.01.T01:three_prime_UTR
TGAAGTAACTGACCTTGTAA+AGG 0.552360 4:+83853171 None:intergenic
AAAGTAGTGTTGTTAAATAG+CGG 0.552618 4:+83850536 None:intergenic
TGTCGCCAGGAGTATACTCA+TGG 0.554151 4:-83850503 MsG0480023332.01.T01:three_prime_UTR
TGGGATCTATTACAAAGTGT+GGG 0.555181 4:-83851690 MsG0480023332.01.T01:three_prime_UTR
TTCATGTAGAAGAAAAGTTG+TGG 0.555269 4:-83852871 MsG0480023332.01.T01:intron
AAAGGAGAAATTATCTGAAG+AGG 0.557579 4:-83852826 MsG0480023332.01.T01:CDS
GTGATTTCAGGACAATAGGC+TGG 0.558184 4:+83850124 None:intergenic
AAATGAACATAGTTGCTCCT+GGG 0.559023 4:-83850775 MsG0480023332.01.T01:three_prime_UTR
AATTAATCCAAAATCAGTAA+AGG 0.560345 4:+83851949 None:intergenic
GAGAGTCGGTGTTTACATGT+TGG 0.565916 4:+83852031 None:intergenic
ATGGAAGAGGAGAAAACAAA+GGG 0.566196 4:-83851104 MsG0480023332.01.T01:three_prime_UTR
GTAGTGATACGATTTCGATC+AGG 0.566672 4:-83850479 MsG0480023332.01.T01:intron
ACGTAAAATCTGCTGCCCCT+AGG 0.568455 4:+83850818 None:intergenic
AGAAATATAGTAGATTTGAT+GGG 0.572975 4:-83851571 MsG0480023332.01.T01:three_prime_UTR
AAAATAAAGGAAAAGAGAGT+CGG 0.576784 4:+83852017 None:intergenic
AGGTAAAGATAGAGGTGTTG+GGG 0.581375 4:+83853203 None:intergenic
GGAATAAATACCTAGAACCC+AGG 0.597520 4:+83850758 None:intergenic
AGAAGAGAGACACACAGACG+TGG 0.602078 4:+83850999 None:intergenic
ATACTCATGCTGTTTACATG+CGG 0.603282 4:-83852148 MsG0480023332.01.T01:CDS
TAGATCCCACATTAAGTGGT+GGG 0.605992 4:+83851704 None:intergenic
TTATCCTCACTACATAAGCT+CGG 0.606028 4:+83850068 None:intergenic
CATTTGTCTGCTCAAAGCAA+AGG 0.608614 4:-83852844 MsG0480023332.01.T01:CDS
GCTGGCATAACAAATGGAAG+AGG 0.614552 4:-83851117 MsG0480023332.01.T01:three_prime_UTR
GTGATTTGTACAAATTCCAG+TGG 0.618614 4:-83850585 MsG0480023332.01.T01:three_prime_UTR
ATGATTTATATATTTCACAA+AGG 0.621324 4:-83851893 MsG0480023332.01.T01:three_prime_UTR
GCTCCAATCTCGCTTATCAG+AGG 0.623806 4:-83853004 MsG0480023332.01.T01:CDS
TTATATATTTCACAAAGGAG+AGG 0.623975 4:-83851888 MsG0480023332.01.T01:three_prime_UTR
ATAGATCCCACATTAAGTGG+TGG 0.633275 4:+83851703 None:intergenic
AATGGAAGAGGAGAAAACAA+AGG 0.635553 4:-83851105 MsG0480023332.01.T01:three_prime_UTR
TTGTTAAATAGCGGCTACAG+CGG 0.638707 4:+83850545 None:intergenic
CACCCTAAATGAAATTAAGG+TGG 0.639738 4:+83851665 None:intergenic
TGGATCCCACCACTTAATGT+GGG 0.643474 4:-83851709 MsG0480023332.01.T01:three_prime_UTR
GTGTCAAAACGTTCATAAGG+AGG 0.646664 4:+83851975 None:intergenic
TTAAATAGCGGCTACAGCGG+TGG 0.648897 4:+83850548 None:intergenic
ACAACCCAATATCAAATGGG+TGG 0.673588 4:-83852774 MsG0480023332.01.T01:CDS
GGTGTTGGGGTGAATTGACG+AGG 0.673613 4:+83853216 None:intergenic
GGAACCGAGCTTATGTAGTG+AGG 0.674016 4:-83850072 MsG0480023332.01.T01:three_prime_UTR
CTTCTTTGGCCATAACCTAG+GGG 0.682008 4:-83850833 MsG0480023332.01.T01:three_prime_UTR
GAAGAGAGACACACAGACGT+GGG 0.682413 4:+83851000 None:intergenic
GGGATCTATTACAAAGTGTG+GGG 0.691445 4:-83851689 MsG0480023332.01.T01:three_prime_UTR
TTCATTGGATGAGATCAATG+TGG 0.704567 4:-83851729 MsG0480023332.01.T01:three_prime_UTR
GTGTTGGGGTGAATTGACGA+GGG 0.732265 4:+83853217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATATTGTAATAG+TGG + Chr4:83851887-83851906 None:intergenic 10.0%
!! AATATAAACTAAACTATATT+TGG - Chr4:83853064-83853083 MsG0480023332.01.T01:CDS 10.0%
!!! ATTACAATATTTTTTTTTGA+AGG - Chr4:83851889-83851908 MsG0480023332.01.T01:three_prime_UTR 10.0%
!!! TATTTCAGTTTTTTTTTTTA+AGG + Chr4:83853002-83853021 None:intergenic 10.0%
!! ATGATTTATATATTTCACAA+AGG - Chr4:83851348-83851367 MsG0480023332.01.T01:three_prime_UTR 15.0%
!! TAATAATGTTATTACGTATT+AGG - Chr4:83850287-83850306 MsG0480023332.01.T01:intron 15.0%
!!! AAATTACATGTTTTTATTGA+AGG + Chr4:83851771-83851790 None:intergenic 15.0%
!!! TATCTATTTTTTTCAACATT+AGG - Chr4:83850877-83850896 MsG0480023332.01.T01:three_prime_UTR 15.0%
!!! TCTTTCTTTTTATTTTCATA+CGG - Chr4:83852090-83852109 MsG0480023332.01.T01:CDS 15.0%
!! AACTAAACTATATTTGGATT+TGG - Chr4:83853070-83853089 MsG0480023332.01.T01:CDS 20.0%
!! AATCATAATGACATGAAAAA+TGG + Chr4:83850323-83850342 None:intergenic 20.0%
!! AATTAATCCAAAATCAGTAA+AGG + Chr4:83851295-83851314 None:intergenic 20.0%
!! AGAAATATAGTAGATTTGAT+GGG - Chr4:83851670-83851689 MsG0480023332.01.T01:three_prime_UTR 20.0%
!! TAAGAGTAACAGAAAAATAA+AGG + Chr4:83851240-83851259 None:intergenic 20.0%
!! TGTAAAATGTATTTATCTAC+AGG + Chr4:83852962-83852981 None:intergenic 20.0%
!! TTATTAGTCAACGTAATTAA+TGG - Chr4:83851804-83851823 MsG0480023332.01.T01:three_prime_UTR 20.0%
!! TTTGTTTACTTATTAATGGT+TGG - Chr4:83851828-83851847 MsG0480023332.01.T01:three_prime_UTR 20.0%
!!! AAATTTAAGTTAGTTTAACG+AGG - Chr4:83850513-83850532 MsG0480023332.01.T01:three_prime_UTR 20.0%
!!! ACAACATTTACTTTGTTATT+AGG - Chr4:83850572-83850591 MsG0480023332.01.T01:three_prime_UTR 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG - Chr4:83850753-83850772 MsG0480023332.01.T01:three_prime_UTR 20.0%
!!! ATTAAACTAACCTTGTTTTT+TGG + Chr4:83850749-83850768 None:intergenic 20.0%
!!! TACTACAAAACTATTTTTTC+TGG + Chr4:83851940-83851959 None:intergenic 20.0%
!!! TGATTTTGGATTAATTAATG+TGG - Chr4:83851299-83851318 MsG0480023332.01.T01:three_prime_UTR 20.0%
!!! TGGTTTTGTTTACTTATTAA+TGG - Chr4:83851824-83851843 MsG0480023332.01.T01:three_prime_UTR 20.0%
! AAAATAAAGGAAAAGAGAGT+CGG + Chr4:83851227-83851246 None:intergenic 25.0%
! AATGTTGTATTTCTTCAGTT+TGG + Chr4:83852284-83852303 None:intergenic 25.0%
! ATAAAAATGTTACGGTATGT+TGG - Chr4:83852047-83852066 MsG0480023332.01.T01:CDS 25.0%
! ATTCTAGATGAAATTCATGT+GGG + Chr4:83850660-83850679 None:intergenic 25.0%
! GAGAAATATAGTAGATTTGA+TGG - Chr4:83851669-83851688 MsG0480023332.01.T01:three_prime_UTR 25.0%
! TCCTTACATCTTTATATTCT+TGG + Chr4:83852905-83852924 None:intergenic 25.0%
! TTATATATTTCACAAAGGAG+AGG - Chr4:83851353-83851372 MsG0480023332.01.T01:three_prime_UTR 25.0%
! TTGCCTCAATAAAAATGTTA+CGG - Chr4:83852039-83852058 MsG0480023332.01.T01:exon 25.0%
!! AAAGTAGTGTTGTTAAATAG+CGG + Chr4:83852708-83852727 None:intergenic 25.0%
!! AGTTTTCATAGAACTTTTCA+AGG + Chr4:83851136-83851155 None:intergenic 25.0%
!! ATACCGTAACATTTTTATTG+AGG + Chr4:83852045-83852064 None:intergenic 25.0%
!! TATATTTGGATTTGGTAAAC+AGG - Chr4:83853078-83853097 MsG0480023332.01.T01:intron 25.0%
!!! GGTATTATTGCTATTTCATT+AGG - Chr4:83850488-83850507 MsG0480023332.01.T01:three_prime_UTR 25.0%
AAAGGAGAAATTATCTGAAG+AGG - Chr4:83850415-83850434 MsG0480023332.01.T01:intron 30.0%
AAAGGTAAAGGTAAAGATAG+AGG + Chr4:83850049-83850068 None:intergenic 30.0%
AATACCACCCATTTGATATT+GGG + Chr4:83850474-83850493 None:intergenic 30.0%
ACACACCCTAAATGAAATTA+AGG + Chr4:83851582-83851601 None:intergenic 30.0%
ACACTCAAACACATTGAATT+GGG - Chr4:83850614-83850633 MsG0480023332.01.T01:three_prime_UTR 30.0%
ATAAGTGAGTTAATGTATGC+AGG + Chr4:83851990-83852009 None:intergenic 30.0%
ATCCTAAGACTGAAGTATAT+AGG + Chr4:83852507-83852526 None:intergenic 30.0%
CAATTCATATTTGACCATAG+AGG - Chr4:83851441-83851460 MsG0480023332.01.T01:three_prime_UTR 30.0%
CATTCTAGATGAAATTCATG+TGG + Chr4:83850661-83850680 None:intergenic 30.0%
CCATCTATTACCAAAAAACA+AGG - Chr4:83850736-83850755 MsG0480023332.01.T01:three_prime_UTR 30.0%
GAAAATGAGAAGAGAGAAAT+AGG - Chr4:83851615-83851634 MsG0480023332.01.T01:three_prime_UTR 30.0%
GACCACCTTAATTTCATTTA+GGG - Chr4:83851574-83851593 MsG0480023332.01.T01:three_prime_UTR 30.0%
GATCCAGAAAGAACAAAAAA+AGG - Chr4:83850968-83850987 MsG0480023332.01.T01:three_prime_UTR 30.0%
GATTTATGAGAGAGAGAAAT+AGG + Chr4:83852327-83852346 None:intergenic 30.0%
GCCAAGAATATAAAGATGTA+AGG - Chr4:83852901-83852920 MsG0480023332.01.T01:intron 30.0%
TAATACCACCCATTTGATAT+TGG + Chr4:83850475-83850494 None:intergenic 30.0%
TACACAACCCAATATCAAAT+GGG - Chr4:83850464-83850483 MsG0480023332.01.T01:intron 30.0%
TCAATTTATCGATCCATAAG+AGG + Chr4:83851398-83851417 None:intergenic 30.0%
TTCATGTAGAAGAAAAGTTG+TGG - Chr4:83850370-83850389 MsG0480023332.01.T01:intron 30.0%
TTCCTATATACTTCAGTCTT+AGG - Chr4:83852502-83852521 MsG0480023332.01.T01:intron 30.0%
TTGGAAGATACAGAATAAAC+AGG - Chr4:83852165-83852184 MsG0480023332.01.T01:CDS 30.0%
TTTCTCATTAACACTGTGTT+TGG + Chr4:83852357-83852376 None:intergenic 30.0%
! AATTTCATTTAGGGTGTGTT+TGG - Chr4:83851583-83851602 MsG0480023332.01.T01:three_prime_UTR 30.0%
! GAGAAAACAAAGGGTAATTT+TGG - Chr4:83852146-83852165 MsG0480023332.01.T01:CDS 30.0%
! TGAAAACTCCTTTTACTTGA+AGG - Chr4:83851148-83851167 MsG0480023332.01.T01:three_prime_UTR 30.0%
! TTTAAATGAATTTTGTCGCC+AGG - Chr4:83852725-83852744 MsG0480023332.01.T01:intron 30.0%
!! AGTAGATTTGATGGGTTATT+TGG - Chr4:83851678-83851697 MsG0480023332.01.T01:three_prime_UTR 30.0%
!! CTGATTTACTTTTCCTCTTA+TGG - Chr4:83851382-83851401 MsG0480023332.01.T01:three_prime_UTR 30.0%
!!! CCTTGTTTTTTGGTAATAGA+TGG + Chr4:83850739-83850758 None:intergenic 30.0%
!!! GATTTTTTTTCCTCCCAATT+TGG - Chr4:83852811-83852830 MsG0480023332.01.T01:CDS 30.0%
!!! TAGCCTTTTTTTGTTCTTTC+TGG + Chr4:83850974-83850993 None:intergenic 30.0%
AAAATGAACATAGTTGCTCC+TGG - Chr4:83852465-83852484 MsG0480023332.01.T01:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG - Chr4:83852466-83852485 MsG0480023332.01.T01:intron 35.0%
AACTGACCTTGTAAAGGTAA+AGG + Chr4:83850067-83850086 None:intergenic 35.0%
AATGAAGAGACAGTGATTTC+AGG + Chr4:83853132-83853151 None:intergenic 35.0%
AATGGAAGAGGAGAAAACAA+AGG - Chr4:83852136-83852155 MsG0480023332.01.T01:CDS 35.0%
ACTCTCATCTGATTCTTCTT+TGG + Chr4:83850194-83850213 None:intergenic 35.0%
ATGATGTCATACACCAGAAT+GGG + Chr4:83852846-83852865 None:intergenic 35.0%
ATGGAAGAGGAGAAAACAAA+GGG - Chr4:83852137-83852156 MsG0480023332.01.T01:CDS 35.0%
ATTAACACTGTGTTTGGTAG+AGG + Chr4:83852351-83852370 None:intergenic 35.0%
CACACTCAAACACATTGAAT+TGG - Chr4:83850613-83850632 MsG0480023332.01.T01:three_prime_UTR 35.0%
CACCCTAAATGAAATTAAGG+TGG + Chr4:83851579-83851598 None:intergenic 35.0%
CAGATATAAACCGTGAGATT+GGG + Chr4:83852792-83852811 None:intergenic 35.0%
CCTTGTAAAGGTAAAGGTAA+AGG + Chr4:83850061-83850080 None:intergenic 35.0%
CCTTTACCTTTACCTTTACA+AGG - Chr4:83850058-83850077 MsG0480023332.01.T01:three_prime_UTR 35.0%
CTTGAGAACCTTCAAGTAAA+AGG + Chr4:83851159-83851178 None:intergenic 35.0%
GGACCACCTTAATTTCATTT+AGG - Chr4:83851573-83851592 MsG0480023332.01.T01:three_prime_UTR 35.0%
GTAATAGATCCCACATTAAG+TGG + Chr4:83851544-83851563 None:intergenic 35.0%
GTACACAACCCAATATCAAA+TGG - Chr4:83850463-83850482 MsG0480023332.01.T01:intron 35.0%
TACTTGCCATATACTTCAAG+TGG - Chr4:83853215-83853234 MsG0480023332.01.T01:CDS 35.0%
TCAGATATAAACCGTGAGAT+TGG + Chr4:83852793-83852812 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG + Chr4:83850190-83850209 None:intergenic 35.0%
TGAAGTAACTGACCTTGTAA+AGG + Chr4:83850073-83850092 None:intergenic 35.0%
TGGGATCTATTACAAAGTGT+GGG - Chr4:83851551-83851570 MsG0480023332.01.T01:three_prime_UTR 35.0%
TGTAAACAGCATGAGTATAG+TGG + Chr4:83851091-83851110 None:intergenic 35.0%
TGTGTTCGACATGTTACATT+TGG + Chr4:83850787-83850806 None:intergenic 35.0%
TTAGTACTCACTCTCTTCAT+TGG - Chr4:83851497-83851516 MsG0480023332.01.T01:three_prime_UTR 35.0%
TTATCCTCACTACATAAGCT+CGG + Chr4:83853176-83853195 None:intergenic 35.0%
TTCATTGGATGAGATCAATG+TGG - Chr4:83851512-83851531 MsG0480023332.01.T01:three_prime_UTR 35.0%
TTGACTAATAGCAGCTATAG+TGG + Chr4:83852603-83852622 None:intergenic 35.0%
TTTACATGTTGGTGCATACA+TGG + Chr4:83851202-83851221 None:intergenic 35.0%
! AAAGGTAAAGATAGAGGTGT+TGG + Chr4:83850043-83850062 None:intergenic 35.0%
! ATACTCATGCTGTTTACATG+CGG - Chr4:83851093-83851112 MsG0480023332.01.T01:three_prime_UTR 35.0%
! CTTTTACTTGAAGGTTCTCA+AGG - Chr4:83851157-83851176 MsG0480023332.01.T01:three_prime_UTR 35.0%
! GTGATTTGTACAAATTCCAG+TGG - Chr4:83852656-83852675 MsG0480023332.01.T01:intron 35.0%
! TTGGATTTGGTAAACAGGTA+TGG - Chr4:83853083-83853102 MsG0480023332.01.T01:intron 35.0%
!! AAGGTAAAGATAGAGGTGTT+GGG + Chr4:83850042-83850061 None:intergenic 35.0%
!! TCCTTATGAACGTTTTGACA+CGG - Chr4:83851268-83851287 MsG0480023332.01.T01:three_prime_UTR 35.0%
!!! TTTCTTTTTCAACTTGCCAG+TGG - Chr4:83850150-83850169 MsG0480023332.01.T01:intron 35.0%
ACAACCCAATATCAAATGGG+TGG - Chr4:83850467-83850486 MsG0480023332.01.T01:intron 40.0%
ACCACTAATCGCTGAAAAAG+TGG - Chr4:83852540-83852559 MsG0480023332.01.T01:intron 40.0%
ATAGATCCCACATTAAGTGG+TGG + Chr4:83851541-83851560 None:intergenic 40.0%
ATCTCGCTTATCAGAGGAAA+AGG - Chr4:83850243-83850262 MsG0480023332.01.T01:intron 40.0%
CATACGGTATTATCATGTGC+TGG - Chr4:83852106-83852125 MsG0480023332.01.T01:CDS 40.0%
CATTTCTCTGTTGATCCAGT+GGG - Chr4:83853148-83853167 MsG0480023332.01.T01:intron 40.0%
CATTTGTCTGCTCAAAGCAA+AGG - Chr4:83850397-83850416 MsG0480023332.01.T01:intron 40.0%
CTCAAATCAATGCATGCATG+CGG + Chr4:83850112-83850131 None:intergenic 40.0%
GACAGTGATTTCAGGACAAT+AGG + Chr4:83853124-83853143 None:intergenic 40.0%
GATGATGTCATACACCAGAA+TGG + Chr4:83852847-83852866 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG + Chr4:83852486-83852505 None:intergenic 40.0%
GGGATCTATTACAAAGTGTG+GGG - Chr4:83851552-83851571 MsG0480023332.01.T01:three_prime_UTR 40.0%
GTAGTGATACGATTTCGATC+AGG - Chr4:83852762-83852781 MsG0480023332.01.T01:CDS 40.0%
GTGGGATCTATTACAAAGTG+TGG - Chr4:83851550-83851569 MsG0480023332.01.T01:three_prime_UTR 40.0%
GTGTCAAAACGTTCATAAGG+AGG + Chr4:83851269-83851288 None:intergenic 40.0%
TAGATCCCACATTAAGTGGT+GGG + Chr4:83851540-83851559 None:intergenic 40.0%
TATCTATCAGCAGAGAAGAG+AGG + Chr4:83850829-83850848 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG - Chr4:83853147-83853166 MsG0480023332.01.T01:intron 40.0%
TCCGTGTCAAAACGTTCATA+AGG + Chr4:83851272-83851291 None:intergenic 40.0%
TGAAGACTCCAAAAAGCAGT+GGG - Chr4:83852217-83852236 MsG0480023332.01.T01:intron 40.0%
TTGTTAAATAGCGGCTACAG+CGG + Chr4:83852699-83852718 None:intergenic 40.0%
TTTCAACTTGCCAGTGGAAT+GGG - Chr4:83850156-83850175 MsG0480023332.01.T01:intron 40.0%
TTTCCTCTGATAAGCGAGAT+TGG + Chr4:83850243-83850262 None:intergenic 40.0%
! ATTTTGCTAGCACTCCTCTA+TGG + Chr4:83851458-83851477 None:intergenic 40.0%
! TCATGTGCTGGCATAACAAA+TGG - Chr4:83852118-83852137 MsG0480023332.01.T01:CDS 40.0%
! TGTCTGCCACTTGAAGTATA+TGG + Chr4:83853224-83853243 None:intergenic 40.0%
! TTTTCAACTTGCCAGTGGAA+TGG - Chr4:83850155-83850174 MsG0480023332.01.T01:intron 40.0%
!! AGGTAAAGATAGAGGTGTTG+GGG + Chr4:83850041-83850060 None:intergenic 40.0%
!! ATGGGTTAGCACAACCAAAT+TGG + Chr4:83852828-83852847 None:intergenic 40.0%
!! TGGGTTAGCACAACCAAATT+GGG + Chr4:83852827-83852846 None:intergenic 40.0%
!!! ACACGGACCTTTACTGATTT+TGG - Chr4:83851285-83851304 MsG0480023332.01.T01:three_prime_UTR 40.0%
!!! ACCACTTTTTCAGCGATTAG+TGG + Chr4:83852544-83852563 None:intergenic 40.0%
ACAGCATGAGTATAGTGGTC+AGG + Chr4:83851086-83851105 None:intergenic 45.0%
ACTCACACGTACCAATCACT+TGG - Chr4:83850930-83850949 MsG0480023332.01.T01:three_prime_UTR 45.0%
ATCAGGTGATCCCAATCTCA+CGG - Chr4:83852779-83852798 MsG0480023332.01.T01:CDS 45.0%
CATGCATGCGGTAACAAATG+AGG + Chr4:83850100-83850119 None:intergenic 45.0%
CTACTCCATGAGTATACTCC+TGG + Chr4:83852746-83852765 None:intergenic 45.0%
CTCACACGTACCAATCACTT+GGG - Chr4:83850931-83850950 MsG0480023332.01.T01:three_prime_UTR 45.0%
CTCTCATGTTCCCAAGTGAT+TGG + Chr4:83850944-83850963 None:intergenic 45.0%
CTTCTTTGGCCATAACCTAG+GGG - Chr4:83852408-83852427 MsG0480023332.01.T01:intron 45.0%
GACATCATCTTCTGCAGTTG+AGG - Chr4:83852858-83852877 MsG0480023332.01.T01:CDS 45.0%
GATAAGCGAGATTGGAGCTT+TGG + Chr4:83850235-83850254 None:intergenic 45.0%
GCTGGCATAACAAATGGAAG+AGG - Chr4:83852124-83852143 MsG0480023332.01.T01:CDS 45.0%
GCTTCTTTGGCCATAACCTA+GGG - Chr4:83852407-83852426 MsG0480023332.01.T01:intron 45.0%
GGTATAATGCTACAGTCCAC+TGG + Chr4:83852675-83852694 None:intergenic 45.0%
GTAGAAAAGCTGCGAGCATT+TGG + Chr4:83853264-83853283 None:intergenic 45.0%
GTGAAGACTCCAAAAAGCAG+TGG - Chr4:83852216-83852235 MsG0480023332.01.T01:intron 45.0%
GTGATTTCAGGACAATAGGC+TGG + Chr4:83853120-83853139 None:intergenic 45.0%
GTTAGCACAACCAAATTGGG+AGG + Chr4:83852824-83852843 None:intergenic 45.0%
TGGATCCCACCACTTAATGT+GGG - Chr4:83851532-83851551 MsG0480023332.01.T01:three_prime_UTR 45.0%
TTGGTTGTGCTAACCCATTC+TGG - Chr4:83852830-83852849 MsG0480023332.01.T01:CDS 45.0%
! GAGAGTCGGTGTTTACATGT+TGG + Chr4:83851213-83851232 None:intergenic 45.0%
AATCTGCTGCCCCTAGGTTA+TGG + Chr4:83852420-83852439 None:intergenic 50.0%
ACGTAAAATCTGCTGCCCCT+AGG + Chr4:83852426-83852445 None:intergenic 50.0%
AGAAGAGAGACACACAGACG+TGG + Chr4:83852245-83852264 None:intergenic 50.0%
AGCAGCTATAGTGGCGCAAT+AGG + Chr4:83852594-83852613 None:intergenic 50.0%
CAGTTGCTAGCACGCTTCTT+TGG - Chr4:83852394-83852413 MsG0480023332.01.T01:intron 50.0%
CATAGTTGCTCCTGGGTTCT+AGG - Chr4:83852473-83852492 MsG0480023332.01.T01:intron 50.0%
CGCTTCTTTGGCCATAACCT+AGG - Chr4:83852406-83852425 MsG0480023332.01.T01:intron 50.0%
CTAGCTTATGTGCTCCTGCA+GGG - Chr4:83851042-83851061 MsG0480023332.01.T01:three_prime_UTR 50.0%
GAAGAGAGACACACAGACGT+GGG + Chr4:83852244-83852263 None:intergenic 50.0%
GCTCCAATCTCGCTTATCAG+AGG - Chr4:83850237-83850256 MsG0480023332.01.T01:intron 50.0%
GGAACCGAGCTTATGTAGTG+AGG - Chr4:83853169-83853188 MsG0480023332.01.T01:intron 50.0%
GTGGATCCCACCACTTAATG+TGG - Chr4:83851531-83851550 MsG0480023332.01.T01:three_prime_UTR 50.0%
GTGTTGGGGTGAATTGACGA+GGG + Chr4:83850027-83850046 None:intergenic 50.0%
TACATAAGCTCGGTTCCCAC+TGG + Chr4:83853166-83853185 None:intergenic 50.0%
TTAAATAGCGGCTACAGCGG+TGG + Chr4:83852696-83852715 None:intergenic 50.0%
! TCTAGCTTATGTGCTCCTGC+AGG - Chr4:83851041-83851060 MsG0480023332.01.T01:three_prime_UTR 50.0%
! TGTCGCCAGGAGTATACTCA+TGG - Chr4:83852738-83852757 MsG0480023332.01.T01:intron 50.0%
GGCTCTTGAACCCATTCCAC+TGG + Chr4:83850169-83850188 None:intergenic 55.0%
! GGTGTTGGGGTGAATTGACG+AGG + Chr4:83850028-83850047 None:intergenic 55.0%
!! ACGTGGGACCCACTGCTTTT+TGG + Chr4:83852228-83852247 None:intergenic 55.0%
TGAGCAGAAACACGCCCTGC+AGG + Chr4:83851059-83851078 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83849980 83853283 83849980 ID=MsG0480023332.01;Name=MsG0480023332.01
Chr4 mRNA 83849980 83853283 83849980 ID=MsG0480023332.01.T01;Parent=MsG0480023332.01;Name=MsG0480023332.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0.6|0.5|1|0|0|6|1790|155
Chr4 exon 83849980 83850163 83849980 ID=MsG0480023332.01.T01:exon:1151;Parent=MsG0480023332.01.T01
Chr4 exon 83850346 83850388 83850346 ID=MsG0480023332.01.T01:exon:1150;Parent=MsG0480023332.01.T01
Chr4 exon 83850480 83852200 83850480 ID=MsG0480023332.01.T01:exon:1149;Parent=MsG0480023332.01.T01
Chr4 CDS 83853197 83853283 83853197 ID=MsG0480023332.01.T01:cds;Parent=MsG0480023332.01.T01
Chr4 CDS 83852999 83853093 83852999 ID=MsG0480023332.01.T01:cds;Parent=MsG0480023332.01.T01
Chr4 CDS 83852754 83852881 83852754 ID=MsG0480023332.01.T01:cds;Parent=MsG0480023332.01.T01
Chr4 CDS 83852043 83852200 83852043 ID=MsG0480023332.01.T01:cds;Parent=MsG0480023332.01.T01
Chr4 three_prime_UTR 83850480 83852042 83850480 ID=MsG0480023332.01.T01:three_prime_utr;Parent=MsG0480023332.01.T01
Chr4 three_prime_UTR 83850346 83850388 83850346 ID=MsG0480023332.01.T01:three_prime_utr;Parent=MsG0480023332.01.T01
Chr4 three_prime_UTR 83849980 83850163 83849980 ID=MsG0480023332.01.T01:three_prime_utr;Parent=MsG0480023332.01.T01
Chr4 mRNA 83851763 83853271 83851763 ID=MsG0480023332.01.T02;Parent=MsG0480023332.01;Name=MsG0480023332.01.T02;_AED=0.45;_eAED=0.45;_QI=0|0.5|0.2|1|0|0|5|0|218
Chr4 exon 83852754 83852884 83852754 ID=MsG0480023332.01.T02:exon:1154;Parent=MsG0480023332.01.T02
Chr4 exon 83852999 83853101 83852999 ID=MsG0480023332.01.T02:exon:1153;Parent=MsG0480023332.01.T02
Chr4 exon 83853184 83853271 83853184 ID=MsG0480023332.01.T02:exon:1152;Parent=MsG0480023332.01.T02
Chr4 CDS 83853184 83853271 83853184 ID=MsG0480023332.01.T02:cds;Parent=MsG0480023332.01.T02
Chr4 CDS 83852999 83853101 83852999 ID=MsG0480023332.01.T02:cds;Parent=MsG0480023332.01.T02
Chr4 CDS 83852754 83852884 83852754 ID=MsG0480023332.01.T02:cds;Parent=MsG0480023332.01.T02
Chr4 CDS 83852061 83852200 83852061 ID=MsG0480023332.01.T02:cds;Parent=MsG0480023332.01.T02
Chr4 CDS 83851763 83851957 83851763 ID=MsG0480023332.01.T02:cds;Parent=MsG0480023332.01.T02
Chr4 mRNA 83851763 83853283 83851763 ID=MsG0480023332.01.T03;Parent=MsG0480023332.01;Name=MsG0480023332.01.T03;_AED=0.45;_eAED=0.45;_QI=0|0.25|0|1|0|0|5|0|214
Chr4 CDS 83853197 83853283 83853197 ID=MsG0480023332.01.T03:cds;Parent=MsG0480023332.01.T03
Chr4 CDS 83852999 83853093 83852999 ID=MsG0480023332.01.T03:cds;Parent=MsG0480023332.01.T03
Chr4 CDS 83852754 83852881 83852754 ID=MsG0480023332.01.T03:cds;Parent=MsG0480023332.01.T03
Chr4 CDS 83852061 83852200 83852061 ID=MsG0480023332.01.T03:cds;Parent=MsG0480023332.01.T03
Chr4 CDS 83851763 83851957 83851763 ID=MsG0480023332.01.T03:cds;Parent=MsG0480023332.01.T03
Gene Sequence

>MsG0480023332.01.T02

ATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTTACCTTTACAAGCTTGCCAGTGGAATGGGTTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTATCAGAGGAAAAGAAGAAAAGTTGTGGAACACATTTGTCTGCTCAAAGCAAAGGAGAAATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAATATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCTGTTTACATGCGGTTTCAGAAAAATGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCACAAAGGAGAGGTTAGTACTGATTTACTTTTCCTCTTATGGATCGATAAATTGAAGAGTTCATCAAGTATCGATGCTCAATTCATATTTGACCATAGAGGAGTGCTAGCAAAATTCTCTTTTCAACACTCTCTTTAG

>MsG0480023332.01.T01

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTGGAATGGGTTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTATCAGAGGAAAAGAAAAGTTGTGGAACACATTTGTCTGCTCAAAGCAAAGGAGAAATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAATATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCTGTTTACATGCGGTTTCAGAAAAATGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGTATGCACCAACATGTAA

>MsG0480023332.01.T03

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTGGAATGGGTTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTATCAGAGGAAAAGAAAAGTTGTGGAACACATTTGTCTGCTCAAAGCAAAGGAGAAATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAATATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCTGTTTACATGCGGTTTCAGAAAAATGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCACAAAGGAGAGGTTAGTACTGATTTACTTTTCCTCTTATGGATCGATAAATTGAAGAGTTCATCAAGTATCGATGCTCAATTCATATTTGACCATAGAGGAGTGCTAGCAAAATTCTCTTTTCAACACTCTCTTTAG

Protein sequence

>MsG0480023332.01.T02

MQCSNYSSFCVPRQFTPTPLSLPLPLPLQACQWNGFKSQPKKNQMRVFCSSDDQSSNLAYQRKRRKVVEHICLLKAKEKLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKNENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFHKGEVSTDLLFLLWIDKLKSSSSIDAQFIFDHRGVLAKFSFQHSL*

>MsG0480023332.01.T01

MSFAMQCSNYSSFCVPRQFTPTPLSLPLPWNGFKSQPKKNQMRVFCSSDDQSSNLAYQRKRKVVEHICLLKAKEKLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKNENLEKFYENSFYLKVLKDHVMTYCHVCTNM*

>MsG0480023332.01.T03

MSFAMQCSNYSSFCVPRQFTPTPLSLPLPWNGFKSQPKKNQMRVFCSSDDQSSNLAYQRKRKVVEHICLLKAKEKLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKNENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFHKGEVSTDLLFLLWIDKLKSSSSIDAQFIFDHRGVLAKFSFQHSL*