AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038600 MtrunA17_Chr7g0273761 93.261 460 30 1 2 460 374 833 0.0 901
Msa1038600 MtrunA17_Chr7g0273761 90.291 309 30 0 147 455 32 340 0.0 592
Msa1038600 MtrunA17_Chr7g0273781 77.609 460 102 1 1 460 34 492 0.0 766
Msa1038600 MtrunA17_Chr7g0273791 77.243 457 103 1 1 457 1 456 0.0 757
Msa1038600 MtrunA17_Chr5g0433641 75.870 460 111 0 1 460 1 460 0.0 738
Msa1038600 MtrunA17_Chr7g0273731 76.906 446 102 1 1 446 84 528 0.0 731
Msa1038600 MtrunA17_Chr7g0273721 73.043 460 123 1 2 460 3 462 0.0 715
Msa1038600 MtrunA17_Chr1g0165671 56.867 466 179 7 6 460 23 477 0.0 551
Msa1038600 MtrunA17_Chr1g0165661 53.132 463 200 5 6 460 5 458 5.68e-177 503
Msa1038600 MtrunA17_Chr1g0165681 52.573 447 206 6 6 449 5 448 1.46e-174 497
Msa1038600 MtrunA17_Chr1g0191081 54.444 450 191 7 3 446 11 452 3.88e-166 476
Msa1038600 MtrunA17_Chr1g0165711 49.127 458 185 8 6 460 5 417 2.19e-146 424
Msa1038600 MtrunA17_Chr7g0273741 89.189 148 16 0 1 148 1 148 8.37e-92 275
Msa1038600 MtrunA17_Chr7g0273701 75.862 174 42 0 287 460 1 174 6.71e-90 271
Msa1038600 MtrunA17_Chr6g0471381 53.516 256 111 6 198 449 6 257 6.70e-88 269
Msa1038600 MtrunA17_Chr8g0386141 36.554 383 229 8 14 391 11 384 2.93e-78 250
Msa1038600 MtrunA17_Chr3g0132001 33.566 429 263 11 14 436 18 430 1.54e-76 245
Msa1038600 MtrunA17_Chr7g0224391 32.639 432 264 9 14 436 20 433 4.93e-73 236
Msa1038600 MtrunA17_Chr3g0098961 70.270 148 44 0 1 148 4 151 2.40e-69 218
Msa1038600 MtrunA17_Chr6g0471971 47.257 237 98 5 163 396 2 214 7.57e-64 206
Msa1038600 MtrunA17_Chr6g0471371 61.905 147 56 0 6 152 5 151 4.68e-62 199
Msa1038600 MtrunA17_Chr1g0165741 60.140 143 57 0 6 148 5 147 8.77e-58 187
Msa1038600 MtrunA17_Chr3g0141851 32.152 395 239 13 13 393 14 393 1.64e-56 194
Msa1038600 MtrunA17_Chr2g0306321 29.040 427 285 12 25 438 36 457 5.99e-53 184
Msa1038600 MtrunA17_Chr8g0353421 62.903 124 46 0 6 129 5 128 2.80e-52 172
Msa1038600 MtrunA17_Chr4g0027071 31.266 403 229 14 17 390 19 402 5.91e-51 179
Msa1038600 MtrunA17_Chr4g0001861 29.512 410 263 11 42 438 34 430 6.62e-49 173
Msa1038600 MtrunA17_Chr2g0334001 29.398 432 279 13 17 436 10 427 1.11e-48 172
Msa1038600 MtrunA17_Chr3g0113821 29.820 389 255 10 17 393 12 394 9.52e-45 162
Msa1038600 MtrunA17_Chr8g0371821 26.977 430 291 11 16 436 9 424 2.22e-44 160
Msa1038600 MtrunA17_Chr7g0270771 30.565 301 164 9 6 292 1 270 1.25e-42 152
Msa1038600 MtrunA17_Chr7g0273691 67.010 97 32 0 166 262 1 97 3.34e-42 144
Msa1038600 MtrunA17_Chr6g0471891 43.979 191 79 4 233 421 1 165 1.15e-41 148
Msa1038600 MtrunA17_Chr2g0283361 28.605 430 279 14 31 445 25 441 2.60e-41 152
Msa1038600 MtrunA17_Chr3g0087401 28.293 410 250 13 18 394 10 408 5.61e-37 140
Msa1038600 MtrunA17_Chr4g0072041 28.186 408 256 11 36 416 39 436 7.08e-37 140
Msa1038600 MtrunA17_Chr7g0253501 29.330 433 226 17 16 393 8 415 2.52e-36 139
Msa1038600 MtrunA17_Chr4g0054081 26.847 406 265 9 36 416 34 432 2.38e-35 136
Msa1038600 MtrunA17_Chr7g0253531 27.818 417 253 15 16 393 8 415 4.07e-35 136
Msa1038600 MtrunA17_Chr3g0106691 28.244 393 256 11 17 390 63 448 7.45e-32 127
Msa1038600 MtrunA17_Chr1g0165721 55.769 104 44 2 348 449 1 104 1.24e-30 114
Msa1038600 MtrunA17_Chr3g0106661 26.623 462 288 16 17 441 17 464 1.31e-30 123
Msa1038600 MtrunA17_Chr6g0470591 26.733 404 259 17 64 441 70 462 3.11e-30 122
Msa1038600 MtrunA17_Chr3g0106721 29.841 315 197 10 43 340 41 348 1.23e-29 120
Msa1038600 MtrunA17_Chr7g0252731 26.357 387 249 13 14 391 21 380 2.22e-29 119
Msa1038600 MtrunA17_Chr3g0106711 35.789 190 112 4 17 198 17 204 3.52e-29 114
Msa1038600 MtrunA17_Chr5g0442701 26.829 451 285 16 8 426 8 445 4.64e-29 119
Msa1038600 MtrunA17_Chr7g0253541 25.127 394 240 16 62 416 57 434 5.66e-29 118
Msa1038600 MtrunA17_Chr5g0442691 26.386 451 287 16 8 426 31 468 2.80e-28 117
Msa1038600 MtrunA17_Chr3g0113181 26.526 426 263 13 53 441 54 466 4.60e-28 116
Msa1038600 MtrunA17_Chr2g0311401 27.723 303 197 9 146 436 5 297 4.99e-28 113
Msa1038600 MtrunA17_Chr1g0165731 43.590 117 51 3 163 272 2 110 5.83e-27 104
Msa1038600 MtrunA17_Chr3g0095721 25.735 408 264 11 62 442 69 464 2.50e-25 108
Msa1038600 MtrunA17_Chr4g0004691 32.530 166 106 2 20 185 14 173 1.08e-24 100
Msa1038600 MtrunA17_Chr5g0442721 25.728 412 263 13 62 442 64 463 1.23e-24 106
Msa1038600 MtrunA17_Chr3g0095731 25.397 441 265 14 43 442 43 460 1.86e-24 105
Msa1038600 MtrunA17_Chr3g0106761 29.513 349 198 17 70 390 19 347 7.26e-24 103
Msa1038600 MtrunA17_Chr7g0273681 80.769 52 10 0 92 143 1 52 1.08e-23 93.6
Msa1038600 MtrunA17_Chr7g0235531 24.932 369 231 10 17 357 11 361 1.45e-23 102
Msa1038600 MtrunA17_Chr3g0106741 29.167 336 198 15 79 390 59 378 1.00e-22 100
Msa1038600 MtrunA17_Chr3g0134041 27.169 438 253 22 37 444 44 445 2.91e-22 99.0
Msa1038600 MtrunA17_Chr5g0408911 25.829 422 257 19 23 417 33 425 1.01e-21 97.4
Msa1038600 MtrunA17_Chr8g0354371 24.818 411 263 15 13 404 20 403 2.48e-21 96.3
Msa1038600 MtrunA17_Chr3g0134071 28.571 413 238 22 62 444 67 452 3.32e-21 96.3
Msa1038600 MtrunA17_Chr7g0273671 93.023 43 3 0 1 43 1 43 8.35e-21 85.1
Msa1038600 MtrunA17_Chr3g0125001 26.154 390 236 18 24 390 25 385 5.70e-20 92.0
Msa1038600 MtrunA17_Chr3g0123061 24.297 391 251 16 16 393 11 369 6.68e-20 91.7
Msa1038600 MtrunA17_Chr4g0053091 23.753 421 256 14 24 421 32 410 8.42e-20 91.7
Msa1038600 MtrunA17_Chr3g0134061 26.633 398 244 18 37 404 42 421 1.99e-19 90.5
Msa1038600 MtrunA17_Chr1g0199561 22.459 423 278 14 16 409 9 410 3.54e-19 89.7
Msa1038600 MtrunA17_Chr3g0134091 28.947 342 190 17 24 339 30 344 8.36e-19 88.6
Msa1038600 MtrunA17_Chr5g0438701 24.190 401 247 18 16 391 9 377 1.41e-18 87.8
Msa1038600 MtrunA17_Chr4g0053081 23.266 447 277 19 24 441 33 442 4.76e-18 86.3
Msa1038600 MtrunA17_Chr3g0134121 25.891 421 257 20 25 419 31 422 1.13e-17 85.5
Msa1038600 MtrunA17_Chr4g0010381 23.650 389 254 15 24 390 25 392 1.73e-17 84.3
Msa1038600 MtrunA17_Chr8g0361771 23.333 420 273 15 16 409 9 405 5.39e-17 83.2
Msa1038600 MtrunA17_Chr3g0134111 25.293 427 258 19 25 420 32 428 1.08e-16 82.0
Msa1038600 MtrunA17_Chr3g0087221 27.329 322 194 13 24 324 25 327 1.15e-16 82.0
Msa1038600 MtrunA17_Chr5g0438681 26.667 240 156 8 16 252 9 231 1.30e-16 81.6
Msa1038600 MtrunA17_Chr8g0361781 23.077 403 259 14 16 391 9 387 2.02e-16 81.3
Msa1038600 MtrunA17_Chr8g0376891 30.357 168 107 5 16 180 9 169 6.12e-16 79.7
Msa1038600 MtrunA17_Chr4g0010311 23.136 389 257 15 24 390 25 393 9.26e-16 79.3
Msa1038600 MtrunA17_Chr7g0224131 24.873 394 254 17 24 398 25 395 1.35e-15 78.6
Msa1038600 MtrunA17_Chr6g0471981 60.784 51 20 0 101 151 1 51 1.54e-15 71.2
Msa1038600 MtrunA17_Chr8g0376901 31.395 172 100 6 16 180 9 169 4.34e-15 77.0
Msa1038600 MtrunA17_Chr2g0298091 29.787 141 96 1 49 189 50 187 2.27e-14 75.1
Msa1038600 MtrunA17_Chr2g0311411 32.143 140 91 3 14 153 7 142 9.98e-14 68.6
Msa1038600 MtrunA17_Chr3g0132831 28.369 141 98 1 49 189 49 186 1.30e-13 72.4
Msa1038600 MtrunA17_Chr1g0169471 33.019 106 63 2 81 184 2 101 5.94e-13 65.5
Msa1038600 MtrunA17_Chr7g0224121 27.485 171 100 8 22 185 28 181 3.94e-12 65.1
Msa1038600 MtrunA17_Chr5g0438721 31.250 144 75 6 62 199 6 131 4.84e-12 63.5
Msa1038600 MtrunA17_Chr6g0456591 29.078 141 89 6 52 185 57 193 9.47e-12 64.7
Msa1038600 MtrunA17_Chr8g0378151 26.027 146 103 2 39 181 36 179 1.29e-11 66.2
Msa1038600 MtrunA17_Chr1g0163441 23.427 286 158 10 49 306 51 303 3.51e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038600 AT5G17540.1 47.323 467 230 9 3 460 2 461 3.54e-144 420
Msa1038600 AT3G03480.1 44.889 450 230 9 2 443 11 450 6.82e-130 384
Msa1038600 AT3G48720.1 30.435 437 288 9 8 441 7 430 1.23e-69 228
Msa1038600 AT5G41040.2 32.483 431 272 10 14 438 21 438 7.74e-69 226
Msa1038600 AT5G41040.1 32.483 431 272 10 14 438 37 454 1.41e-68 226
Msa1038600 AT5G63560.1 30.717 446 281 10 1 439 1 425 1.25e-65 217
Msa1038600 AT1G27620.1 30.858 431 266 12 14 434 13 421 6.97e-56 192
Msa1038600 AT5G48930.1 29.385 439 275 12 17 438 10 430 7.36e-49 173
Msa1038600 AT1G03390.1 30.383 418 254 13 14 411 26 426 1.58e-47 170
Msa1038600 AT2G19070.1 30.000 420 245 14 36 423 29 431 7.22e-47 168
Msa1038600 AT1G28680.1 27.700 426 284 14 31 441 27 443 5.80e-43 157
Msa1038600 AT5G57840.1 28.784 403 252 12 11 391 4 393 5.93e-41 152
Msa1038600 AT3G62160.1 28.774 424 247 14 6 403 1 395 8.78e-40 148
Msa1038600 AT2G40230.1 29.040 396 249 15 17 395 12 392 2.39e-39 147
Msa1038600 AT1G28680.2 29.167 336 226 10 31 360 27 356 4.53e-39 145
Msa1038600 AT5G07080.1 27.391 460 285 15 8 441 12 448 1.78e-37 142
Msa1038600 AT3G47170.1 25.996 477 291 17 8 442 10 466 3.38e-35 136
Msa1038600 AT1G65450.1 27.960 397 246 15 17 392 26 403 8.67e-34 132
Msa1038600 AT2G25150.1 24.622 463 297 17 16 446 19 461 4.71e-29 119
Msa1038600 AT1G78990.1 25.301 415 270 12 43 437 45 439 3.79e-27 113
Msa1038600 AT1G32910.1 26.750 400 251 15 63 437 63 445 4.83e-27 113
Msa1038600 AT1G31490.1 25.260 384 243 11 31 394 29 388 1.54e-26 112
Msa1038600 AT4G31910.1 26.471 442 283 18 26 438 27 455 1.09e-25 109
Msa1038600 AT2G23510.1 25.686 401 251 15 16 390 19 398 7.32e-25 107
Msa1038600 AT5G16410.1 24.490 392 260 12 65 437 91 465 1.89e-23 103
Msa1038600 AT3G26040.1 24.000 400 257 12 16 393 9 383 3.23e-23 102
Msa1038600 AT4G15390.1 24.769 432 276 18 16 423 14 420 2.92e-22 99.4
Msa1038600 AT4G15390.2 24.769 432 276 18 16 423 14 420 2.92e-22 99.4
Msa1038600 AT5G42830.1 28.184 369 209 15 14 353 16 357 6.26e-22 98.6
Msa1038600 AT5G67150.1 24.623 398 255 14 24 400 30 403 9.51e-21 94.7
Msa1038600 AT1G24430.1 25.606 371 219 13 44 391 41 377 9.90e-21 94.7
Msa1038600 AT1G24420.2 27.211 441 266 17 16 434 11 418 2.52e-19 90.5
Msa1038600 AT1G24420.1 27.211 441 266 17 16 434 11 418 2.52e-19 90.5
Msa1038600 AT2G39980.1 23.923 418 254 12 65 431 62 466 1.52e-18 88.6
Msa1038600 AT5G07860.1 25.700 393 247 13 37 404 45 417 2.12e-18 87.8
Msa1038600 AT3G30280.1 23.023 430 285 16 16 423 12 417 2.96e-18 87.4
Msa1038600 AT5G07870.1 24.582 419 284 11 13 404 16 429 1.19e-17 85.5
Msa1038600 AT3G50270.1 24.742 388 252 14 24 390 30 398 8.91e-17 82.8
Msa1038600 AT5G67160.1 24.422 389 267 13 17 390 7 383 2.14e-16 81.6
Msa1038600 AT5G23940.1 27.654 358 225 16 53 388 54 399 2.50e-16 81.6
Msa1038600 AT5G23970.1 25.313 399 242 16 16 391 9 374 3.35e-16 80.9
Msa1038600 AT5G07850.1 25.606 371 232 17 62 404 67 421 3.67e-16 80.9
Msa1038600 AT3G23840.1 23.600 250 153 6 39 272 36 263 1.05e-14 76.3
Msa1038600 AT5G47950.1 22.558 430 270 17 16 423 12 400 1.51e-14 75.9
Msa1038600 AT5G39080.1 23.529 357 229 13 65 387 65 411 6.96e-12 67.8
Msa1038600 AT3G50280.2 23.239 284 194 9 134 402 3 277 2.23e-11 65.1
Msa1038600 AT4G13840.1 27.333 150 104 2 39 185 38 185 5.61e-11 64.7
Msa1038600 AT4G24510.1 24.215 223 145 8 62 270 57 269 9.45e-11 63.9

Find 115 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCGTTGTAGGTTGATTT+TGG 0.190745 7_1:+75497603 None:intergenic
GGCAGATCTTATGGTTATTA+AGG 0.197032 7_1:-75497882 Msa1038600:CDS
ATCCACTTGCGGGAAGAATT+AGG 0.214730 7_1:-75500848 Msa1038600:CDS
TCGCCACTTGATGGATATTA+TGG 0.235022 7_1:-75498031 Msa1038600:CDS
TTAATGCACGTTCAAGGTTT+AGG 0.237256 7_1:-75498063 Msa1038600:CDS
GCATTCTTTGGCAGATCTTA+TGG 0.245241 7_1:-75497891 Msa1038600:CDS
GCACATTTAAGAACCTTAAC+AGG 0.260011 7_1:+75500897 None:intergenic
AAGTACTCAGAAGTGAATTT+TGG 0.269004 7_1:-75497803 Msa1038600:CDS
TAATGCACGTTCAAGGTTTA+GGG 0.290580 7_1:-75498062 Msa1038600:CDS
AGAAGAATACATGCATTCTT+TGG 0.294021 7_1:-75497903 Msa1038600:CDS
GTGTATGGTGGAGTGGTAAA+AGG 0.301086 7_1:-75497767 Msa1038600:CDS
AAGCTTTGCGGAAACCCTTT+AGG 0.345123 7_1:-75497968 Msa1038600:CDS
ATCATTTGTACTTCTTCATC+TGG 0.345335 7_1:+75498094 None:intergenic
TGAAACAATTCATGAATGTA+TGG 0.347707 7_1:-75498420 Msa1038600:CDS
TAACGATAGATAAATATAAT+AGG 0.351117 7_1:+75500945 None:intergenic
GGGTCTTTCTCTACCATTGA+TGG 0.358439 7_1:+75500918 None:intergenic
GTTTCATTGTGGGCGTAAAC+TGG 0.359119 7_1:-75498471 Msa1038600:CDS
GAACATCGTATATGAGTTCT+TGG 0.374329 7_1:+75500703 None:intergenic
GGATGGGGTGAGGCGGTGTA+TGG 0.375232 7_1:-75497782 Msa1038600:CDS
ATGGAACATCACAAACTATA+AGG 0.375658 7_1:+75497559 None:intergenic
TCCACTTGCGGGAAGAATTA+GGG 0.384194 7_1:-75500847 Msa1038600:CDS
GAAGAAAGATTGATGGACTA+TGG 0.390074 7_1:+75498240 None:intergenic
CATGAATGTATGGGCAGAAA+TGG 0.391377 7_1:-75498410 Msa1038600:CDS
CCTGCGGTGGTGACAGCAGC+CGG 0.395402 7_1:+75497992 None:intergenic
GCTAACCATTCGCCACTTGA+TGG 0.395994 7_1:-75498040 Msa1038600:CDS
GATGTAACACTTGATGAATT+TGG 0.399157 7_1:-75500756 Msa1038600:CDS
CATGCAATTGGCGATGCAAC+AGG 0.403226 7_1:-75498445 Msa1038600:CDS
AACCTTCCATTCAACCAGTA+TGG 0.403496 7_1:-75498372 Msa1038600:CDS
GTGTAAAGAAGAAAGATTGA+TGG 0.408577 7_1:+75498233 None:intergenic
TCAATAATTTGTTTCGTGCC+TGG 0.413381 7_1:+75500681 None:intergenic
TGGGGTGAGGCGGTGTATGG+TGG 0.423405 7_1:-75497779 Msa1038600:CDS
TTTCCACTGCATAACCTAAA+GGG 0.424654 7_1:+75497954 None:intergenic
GAAGAGTTAGATAAGATGTT+TGG 0.426938 7_1:-75497629 Msa1038600:CDS
AAGTGTGGTGGTTTCATTGT+GGG 0.430933 7_1:-75498481 Msa1038600:CDS
GTTTATTACTATCCACTTGC+GGG 0.432351 7_1:-75500858 Msa1038600:CDS
TCTTCCTTGTTGATATTTGA+CGG 0.432691 7_1:+75498277 None:intergenic
TCATCCTATTCTGTTCATAC+AGG 0.434182 7_1:-75500658 Msa1038600:intron
TATTTGACGGAAGTATTTGT+TGG 0.434903 7_1:+75498290 None:intergenic
GTTCTTGGAAGCAAGGGAAT+GGG 0.437641 7_1:+75500718 None:intergenic
CCGGCTGCTGTCACCACCGC+AGG 0.437909 7_1:-75497992 Msa1038600:CDS
GAAGAATTAGGGAGGGAGCT+AGG 0.442327 7_1:-75500836 Msa1038600:CDS
CTGCATTGACGAAGGTGAAA+TGG 0.446524 7_1:+75498178 None:intergenic
GCATCGTTAATGCACGTTCA+AGG 0.459702 7_1:-75498069 Msa1038600:CDS
ATTTCCACTGCATAACCTAA+AGG 0.460925 7_1:+75497953 None:intergenic
GTGGAGGGTCTCTTGCCATT+AGG 0.461083 7_1:+75498338 None:intergenic
GGGAGCTAGGGACAAGTTGA+TGG 0.473590 7_1:-75500823 Msa1038600:CDS
ACAGCTGGTGGCACCAACTC+TGG 0.474065 7_1:+75501035 None:intergenic
AAACTAGGACCAATCGTTGT+AGG 0.477655 7_1:+75497593 None:intergenic
AGTTCTTGGAAGCAAGGGAA+TGG 0.482681 7_1:+75500717 None:intergenic
ATCCCACATAAGAATGCAAA+AGG 0.484239 7_1:-75497710 Msa1038600:CDS
AAGAATTAGGGAGGGAGCTA+GGG 0.488281 7_1:-75500835 Msa1038600:CDS
GAACTCATATACGATGTTCC+AGG 0.488751 7_1:-75500699 Msa1038600:CDS
AGGATCTCTCTGCGCCATAC+TGG 0.495159 7_1:+75498358 None:intergenic
GTAAACTGGAACCATGCAAT+TGG 0.495199 7_1:-75498457 Msa1038600:CDS
GGTGGGGCTGGACCTTTACC+TGG 0.499401 7_1:-75497746 Msa1038600:CDS
TCCGCAAAGCTTCCCTGCGG+TGG 0.499603 7_1:+75497979 None:intergenic
TCTGCGCCATACTGGTTGAA+TGG 0.499989 7_1:+75498366 None:intergenic
TCCCTAATTCTTCCCGCAAG+TGG 0.509710 7_1:+75500846 None:intergenic
AAGAATGCAAAAGGAGAAGA+AGG 0.510250 7_1:-75497701 Msa1038600:CDS
GGAGTGGTAAAAGGTGGGGC+TGG 0.515635 7_1:-75497758 Msa1038600:CDS
ACCACCGCAGGGAAGCTTTG+CGG 0.519285 7_1:-75497980 Msa1038600:CDS
CTATCGTTACGAACCATCAA+TGG 0.520395 7_1:-75500931 Msa1038600:CDS
ATGGTGGAGTGGTAAAAGGT+GGG 0.522041 7_1:-75497763 Msa1038600:CDS
AGTTTAACTTCGCGAGGAGT+GGG 0.522694 7_1:+75501011 None:intergenic
CAAAATCAACCTACAACGAT+TGG 0.525230 7_1:-75497602 Msa1038600:CDS
TAGTTTAACTTCGCGAGGAG+TGG 0.531895 7_1:+75501010 None:intergenic
TCGCGAGGAGTGGGTACAGC+TGG 0.532083 7_1:+75501020 None:intergenic
GAAACAATTCATGAATGTAT+GGG 0.532109 7_1:-75498419 Msa1038600:CDS
TGAACCTGTATGAACAGAAT+AGG 0.541680 7_1:+75500654 None:intergenic
CGCCATACTGGTTGAATGGA+AGG 0.543769 7_1:+75498370 None:intergenic
TTCTTGGAAGCAAGGGAATG+GGG 0.544018 7_1:+75500719 None:intergenic
ATATACGTAGCTCCAGGTAA+AGG 0.544205 7_1:+75497734 None:intergenic
TGTTTATTACTATCCACTTG+CGG 0.545893 7_1:-75500859 Msa1038600:CDS
GGTAGAGAAAGACCCTGTTA+AGG 0.553972 7_1:-75500910 Msa1038600:CDS
ATGGTGGATTGTACTGGTGA+AGG 0.555043 7_1:-75500804 Msa1038600:CDS
TATATGAGTTCTTGGAAGCA+AGG 0.556792 7_1:+75500711 None:intergenic
CTGCGGTGGTGACAGCAGCC+GGG 0.558615 7_1:+75497993 None:intergenic
AAGGTAGAGATGACAAAACT+AGG 0.564072 7_1:+75497578 None:intergenic
GCGGAGGTGCCAACCAGAGT+TGG 0.564737 7_1:-75501048 Msa1038600:CDS
TGAGGCGGTGTATGGTGGAG+TGG 0.570853 7_1:-75497774 Msa1038600:CDS
CTGTTGCATCGCCAATTGCA+TGG 0.571678 7_1:+75498446 None:intergenic
GATAATAGTTTAACTTCGCG+AGG 0.573152 7_1:+75501005 None:intergenic
CTGGTGGCACCAACTCTGGT+TGG 0.580270 7_1:+75501039 None:intergenic
TATGGTGGAGTGGTAAAAGG+TGG 0.581935 7_1:-75497764 Msa1038600:CDS
TAACCTCTGAAGTTATGAAG+AGG 0.583920 7_1:-75497658 Msa1038600:CDS
CGAGGAGTGGGTACAGCTGG+TGG 0.584922 7_1:+75501023 None:intergenic
GGTTGCAAGTAATGCGTGGA+GGG 0.593384 7_1:+75498323 None:intergenic
GGGATTATATACGTAGCTCC+AGG 0.593500 7_1:+75497728 None:intergenic
ATGGCGCAGAGAGATCCTAA+TGG 0.598701 7_1:-75498353 Msa1038600:CDS
AAACCTCTTCATAACTTCAG+AGG 0.602162 7_1:+75497655 None:intergenic
TCTGACATAGATGATCAAGA+AGG 0.602444 7_1:-75500984 Msa1038600:CDS
ATATGAGTTCTTGGAAGCAA+GGG 0.602607 7_1:+75500712 None:intergenic
AAGTTGATGGTGGATTGTAC+TGG 0.603417 7_1:-75500810 Msa1038600:CDS
CAAGTGTGGTGGTTTCATTG+TGG 0.611937 7_1:-75498482 Msa1038600:CDS
TTACCATAATATCCATCAAG+TGG 0.613197 7_1:+75498028 None:intergenic
TCTTGGAAGCAAGGGAATGG+GGG 0.616445 7_1:+75500720 None:intergenic
AATATCCATCAAGTGGCGAA+TGG 0.617318 7_1:+75498035 None:intergenic
AAACCCTTTAGGTTATGCAG+TGG 0.626639 7_1:-75497957 Msa1038600:CDS
CGATGGTTGCAAGTAATGCG+TGG 0.628214 7_1:+75498319 None:intergenic
AGCTAGGGACAAGTTGATGG+TGG 0.631233 7_1:-75500820 Msa1038600:CDS
CGGCTGCTGTCACCACCGCA+GGG 0.632979 7_1:-75497991 Msa1038600:CDS
GTATTTGTTGGTATTCACGA+TGG 0.633823 7_1:+75498302 None:intergenic
TGGTGGAGTGGTAAAAGGTG+GGG 0.634490 7_1:-75497762 Msa1038600:CDS
CACATTTAAGAACCTTAACA+GGG 0.639455 7_1:+75500898 None:intergenic
CAGATCACACGTCTCAAGTG+TGG 0.657117 7_1:-75498496 Msa1038600:CDS
CAAATGTACTGCATTGACGA+AGG 0.667868 7_1:+75498170 None:intergenic
ATCACACGTCTCAAGTGTGG+TGG 0.671401 7_1:-75498493 Msa1038600:CDS
TGTTAATGTTCACAGCGCGG+AGG 0.678502 7_1:-75501064 Msa1038600:CDS
TGGTTGCAAGTAATGCGTGG+AGG 0.683206 7_1:+75498322 None:intergenic
ACTTGCGGGAAGAATTAGGG+AGG 0.685706 7_1:-75500844 Msa1038600:CDS
CTTGCGGGAAGAATTAGGGA+GGG 0.687102 7_1:-75500843 Msa1038600:CDS
ACTTCCGTCAAATATCAACA+AGG 0.705210 7_1:-75498281 Msa1038600:CDS
GTATGGGCAGAAATGGCTCG+AGG 0.708290 7_1:-75498403 Msa1038600:CDS
GTTTCCGCAAAGCTTCCCTG+CGG 0.715488 7_1:+75497976 None:intergenic
CATTGTTAATGTTCACAGCG+CGG 0.734245 7_1:-75501067 Msa1038600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTAGAATAATAATTAA+AGG - chr7_1:75498606-75498625 Msa1038600:intron 10.0%
!! TATAATAAATAAAAAGAAAG+AGG + chr7_1:75499790-75499809 None:intergenic 10.0%
!! TAACGATAGATAAATATAAT+AGG + chr7_1:75497756-75497775 None:intergenic 15.0%
!!! TTTTGACAGAAAATTAATTA+TGG - chr7_1:75498323-75498342 Msa1038600:CDS 15.0%
!! TTTGACAGAAAATTAATTAT+GGG - chr7_1:75498324-75498343 Msa1038600:CDS 15.0%
!!! TAATTTTCTTTAATCATTGA+CGG + chr7_1:75498374-75498393 None:intergenic 15.0%
!!! TAAATCTATGAAATTAGTTT+AGG + chr7_1:75498472-75498491 None:intergenic 15.0%
!!! AACAAATATTTCTTATGTTT+TGG + chr7_1:75498573-75498592 None:intergenic 15.0%
!! ATATGTATATGAAAACATAA+AGG + chr7_1:75498649-75498668 None:intergenic 15.0%
!!! AAATTTTAGTCTCTTTTTAA+TGG - chr7_1:75498671-75498690 Msa1038600:intron 15.0%
!! TCAAAAATAGAAGAGTTAAT+AGG + chr7_1:75497596-75497615 None:intergenic 20.0%
!! TTTGGAAGAAAAAAAAACAT+AGG + chr7_1:75498259-75498278 None:intergenic 20.0%
!!! ATGATTAGTGAATTTTTGTT+AGG - chr7_1:75499668-75499687 Msa1038600:intron 20.0%
!!! ATCATTGATTTGAAATTCAA+AGG - chr7_1:75499843-75499862 Msa1038600:intron 20.0%
! CACAACTTAATGGAAAAAAA+TGG + chr7_1:75498131-75498150 None:intergenic 25.0%
!!! ATTGTTATTGCCTACAATTT+TGG - chr7_1:75498213-75498232 Msa1038600:CDS 25.0%
! TTCTTCCAAAAAATAGTAGT+TGG - chr7_1:75498269-75498288 Msa1038600:CDS 25.0%
! AAATTAATTATGGGTAGAGA+CGG - chr7_1:75498333-75498352 Msa1038600:CDS 25.0%
!!! CACATACACTTAGTTATTTT+AGG - chr7_1:75498427-75498446 Msa1038600:CDS 25.0%
!!! TTTCATTCTTTTTTGTAACC+TGG - chr7_1:75499609-75499628 Msa1038600:intron 25.0%
! TATTGTTTGGTATGAGATTA+AGG + chr7_1:75499992-75500011 None:intergenic 25.0%
! TTCTATGAACATAGAAAGAA+AGG + chr7_1:75500021-75500040 None:intergenic 25.0%
! ATCAAAAAAGAAAGTTCATG+TGG + chr7_1:75500078-75500097 None:intergenic 25.0%
! TGAAACAATTCATGAATGTA+TGG - chr7_1:75500278-75500297 Msa1038600:intron 25.0%
! GAAACAATTCATGAATGTAT+GGG - chr7_1:75500279-75500298 Msa1038600:intron 25.0%
CACATTTAAGAACCTTAACA+GGG + chr7_1:75497803-75497822 None:intergenic 30.0%
TGTTTATTACTATCCACTTG+CGG - chr7_1:75497839-75497858 Msa1038600:CDS 30.0%
GATGTAACACTTGATGAATT+TGG - chr7_1:75497942-75497961 Msa1038600:CDS 30.0%
TCCAAAAAATAGTAGTTGGA+AGG - chr7_1:75498273-75498292 Msa1038600:CDS 30.0%
! TAGTCTCTTTTTAATGGAAC+TGG - chr7_1:75498677-75498696 Msa1038600:intron 30.0%
! AGTCTCTTTTTAATGGAACT+GGG - chr7_1:75498678-75498697 Msa1038600:intron 30.0%
!! AAAAAGGTTTGGATTAGCTT+GGG + chr7_1:75498781-75498800 None:intergenic 30.0%
!! AAAAAAGGTTTGGATTAGCT+TGG + chr7_1:75498782-75498801 None:intergenic 30.0%
ACATCGGAAAAAAAAAGGTT+TGG + chr7_1:75498792-75498811 None:intergenic 30.0%
GAACAGTTAGAGTATAACAA+CGG + chr7_1:75499575-75499594 None:intergenic 30.0%
ATTCAAATGAGTCTCACTAA+AGG + chr7_1:75499871-75499890 None:intergenic 30.0%
AGAAAGGCAAGTATATTGTT+TGG + chr7_1:75500005-75500024 None:intergenic 30.0%
TAACATGTAGAAAGTTCATG+TGG + chr7_1:75500107-75500126 None:intergenic 30.0%
ATCACATATACCAAACTGAT+TGG - chr7_1:75500131-75500150 Msa1038600:intron 30.0%
TATACCAAACTGATTGGATT+AGG - chr7_1:75500137-75500156 Msa1038600:intron 30.0%
!! TATTTGACGGAAGTATTTGT+TGG + chr7_1:75500411-75500430 None:intergenic 30.0%
TCTTCCTTGTTGATATTTGA+CGG + chr7_1:75500424-75500443 None:intergenic 30.0%
GTGTAAAGAAGAAAGATTGA+TGG + chr7_1:75500468-75500487 None:intergenic 30.0%
! ATCTTATCACTGCATGTTTT+TGG - chr7_1:75500551-75500570 Msa1038600:intron 30.0%
ATCATTTGTACTTCTTCATC+TGG + chr7_1:75500607-75500626 None:intergenic 30.0%
TTACCATAATATCCATCAAG+TGG + chr7_1:75500673-75500692 None:intergenic 30.0%
AGAAGAATACATGCATTCTT+TGG - chr7_1:75500795-75500814 Msa1038600:CDS 30.0%
! AAGTACTCAGAAGTGAATTT+TGG - chr7_1:75500895-75500914 Msa1038600:CDS 30.0%
GAAGAGTTAGATAAGATGTT+TGG - chr7_1:75501069-75501088 Msa1038600:CDS 30.0%
! GATAATAGTTTAACTTCGCG+AGG + chr7_1:75497696-75497715 None:intergenic 35.0%
TCTGACATAGATGATCAAGA+AGG - chr7_1:75497714-75497733 Msa1038600:CDS 35.0%
GCACATTTAAGAACCTTAAC+AGG + chr7_1:75497804-75497823 None:intergenic 35.0%
GTTTATTACTATCCACTTGC+GGG - chr7_1:75497840-75497859 Msa1038600:CDS 35.0%
ATATGAGTTCTTGGAAGCAA+GGG + chr7_1:75497989-75498008 None:intergenic 35.0%
TATATGAGTTCTTGGAAGCA+AGG + chr7_1:75497990-75498009 None:intergenic 35.0%
GAACATCGTATATGAGTTCT+TGG + chr7_1:75497998-75498017 None:intergenic 35.0%
!! TCAATAATTTGTTTCGTGCC+TGG + chr7_1:75498020-75498039 None:intergenic 35.0%
TCATCCTATTCTGTTCATAC+AGG - chr7_1:75498040-75498059 Msa1038600:CDS 35.0%
TGAACCTGTATGAACAGAAT+AGG + chr7_1:75498047-75498066 None:intergenic 35.0%
! TCTCATCCTTAATGTTTTGC+TGG - chr7_1:75498080-75498099 Msa1038600:CDS 35.0%
ATTAAGTCAAAAGTCTGGCT+AGG + chr7_1:75498106-75498125 None:intergenic 35.0%
TGGTGATTAAGTCAAAAGTC+TGG + chr7_1:75498111-75498130 None:intergenic 35.0%
TTGTCTGAGTCACAACTTAA+TGG + chr7_1:75498141-75498160 None:intergenic 35.0%
AACCTAGTCTCCAAAATTGT+AGG + chr7_1:75498226-75498245 None:intergenic 35.0%
!!! GCCTTCCAACTACTATTTTT+TGG + chr7_1:75498277-75498296 None:intergenic 35.0%
! AATTTTGCCTCTCAACTAAC+AGG - chr7_1:75498508-75498527 Msa1038600:intron 35.0%
! GTCTCTTTTTAATGGAACTG+GGG - chr7_1:75498679-75498698 Msa1038600:intron 35.0%
!! AAAAGGTTTGGATTAGCTTG+GGG + chr7_1:75498780-75498799 None:intergenic 35.0%
GGTCTACATCGGAAAAAAAA+AGG + chr7_1:75498797-75498816 None:intergenic 35.0%
TGAATACGAAGAAGCCAAAA+CGG + chr7_1:75499130-75499149 None:intergenic 35.0%
!!! CTGTCTTTTGTTTTTGTTGC+AGG - chr7_1:75499278-75499297 Msa1038600:intron 35.0%
!! ATTTATGCTTGCTGTCTATC+AGG - chr7_1:75499500-75499519 Msa1038600:intron 35.0%
!! TTTATGCTTGCTGTCTATCA+GGG - chr7_1:75499501-75499520 Msa1038600:intron 35.0%
! TAGATTAGAGTTGATCCACT+TGG - chr7_1:75499692-75499711 Msa1038600:intron 35.0%
TCGTGATAAATCATTCCAAG+TGG + chr7_1:75499710-75499729 None:intergenic 35.0%
ATCACGATTGTATTCCCATT+TGG - chr7_1:75499723-75499742 Msa1038600:intron 35.0%
TCACGATTGTATTCCCATTT+GGG - chr7_1:75499724-75499743 Msa1038600:intron 35.0%
! AAGAAAGAGGTACATAGACT+GGG + chr7_1:75499777-75499796 None:intergenic 35.0%
! AAAGAAAGAGGTACATAGAC+TGG + chr7_1:75499778-75499797 None:intergenic 35.0%
ATGTCCTAATCCAATCAGTT+TGG + chr7_1:75500144-75500163 None:intergenic 35.0%
! AAACTGATTGGATTAGGACA+TGG - chr7_1:75500143-75500162 Msa1038600:intron 35.0%
! GTATTTGTTGGTATTCACGA+TGG + chr7_1:75500399-75500418 None:intergenic 35.0%
ACTTCCGTCAAATATCAACA+AGG - chr7_1:75500417-75500436 Msa1038600:intron 35.0%
!! GAAGAAAGATTGATGGACTA+TGG + chr7_1:75500461-75500480 None:intergenic 35.0%
TTAATGCACGTTCAAGGTTT+AGG - chr7_1:75500635-75500654 Msa1038600:intron 35.0%
TAATGCACGTTCAAGGTTTA+GGG - chr7_1:75500636-75500655 Msa1038600:intron 35.0%
TTTCCACTGCATAACCTAAA+GGG + chr7_1:75500747-75500766 None:intergenic 35.0%
ATTTCCACTGCATAACCTAA+AGG + chr7_1:75500748-75500767 None:intergenic 35.0%
GGCAGATCTTATGGTTATTA+AGG - chr7_1:75500816-75500835 Msa1038600:CDS 35.0%
! ACTCAGAAGTGAATTTTGGA+TGG - chr7_1:75500899-75500918 Msa1038600:CDS 35.0%
! CTCAGAAGTGAATTTTGGAT+GGG - chr7_1:75500900-75500919 Msa1038600:CDS 35.0%
! TCAGAAGTGAATTTTGGATG+GGG - chr7_1:75500901-75500920 Msa1038600:CDS 35.0%
ATCCCACATAAGAATGCAAA+AGG - chr7_1:75500988-75501007 Msa1038600:CDS 35.0%
! CTCCTTTTGCATTCTTATGT+GGG + chr7_1:75500993-75501012 None:intergenic 35.0%
! TCTCCTTTTGCATTCTTATG+TGG + chr7_1:75500994-75501013 None:intergenic 35.0%
AAGAATGCAAAAGGAGAAGA+AGG - chr7_1:75500997-75501016 Msa1038600:CDS 35.0%
!! TAACCTCTGAAGTTATGAAG+AGG - chr7_1:75501040-75501059 Msa1038600:CDS 35.0%
AAACCTCTTCATAACTTCAG+AGG + chr7_1:75501046-75501065 None:intergenic 35.0%
!!! CAATCGTTGTAGGTTGATTT+TGG + chr7_1:75501098-75501117 None:intergenic 35.0%
CAAAATCAACCTACAACGAT+TGG - chr7_1:75501096-75501115 Msa1038600:exon 35.0%
AAGGTAGAGATGACAAAACT+AGG + chr7_1:75501123-75501142 None:intergenic 35.0%
CATTGTTAATGTTCACAGCG+CGG - chr7_1:75497631-75497650 Msa1038600:CDS 40.0%
CTATCGTTACGAACCATCAA+TGG - chr7_1:75497767-75497786 Msa1038600:CDS 40.0%
!! AAGTTGATGGTGGATTGTAC+TGG - chr7_1:75497888-75497907 Msa1038600:CDS 40.0%
GAACTCATATACGATGTTCC+AGG - chr7_1:75497999-75498018 Msa1038600:CDS 40.0%
!! TGCCTACAATTTTGGAGACT+AGG - chr7_1:75498221-75498240 Msa1038600:CDS 40.0%
GACAATTGAATCCACTCGAA+TGG - chr7_1:75498299-75498318 Msa1038600:CDS 40.0%
TCTGTCAAAATCCATTCGAG+TGG + chr7_1:75498313-75498332 None:intergenic 40.0%
TAACAGGCAAGAAGACAAGT+TGG - chr7_1:75498524-75498543 Msa1038600:intron 40.0%
AACCAAGGAACCAAACAGAT+CGG + chr7_1:75498908-75498927 None:intergenic 40.0%
! AGTGTTTTGCAGTTCCGTTT+TGG - chr7_1:75499113-75499132 Msa1038600:intron 40.0%
! GTTTGTCGTTGTTGTTAGAC+TGG - chr7_1:75499307-75499326 Msa1038600:intron 40.0%
TGGTGTTCAATAACCCGAAA+GGG - chr7_1:75499361-75499380 Msa1038600:intron 40.0%
TTATACGAACCAGACCCTTT+CGG + chr7_1:75499378-75499397 None:intergenic 40.0%
TTATACGAACCAGACCCTTT+CGG + chr7_1:75499378-75499397 None:intergenic 40.0%
! ACTTGGATTTTGTACCGTGT+TGG - chr7_1:75499534-75499553 Msa1038600:intron 40.0%
TAGAGTATAACAACGGCGAA+TGG + chr7_1:75499568-75499587 None:intergenic 40.0%
! ATTCCCATTTGGGTTATTCC+TGG - chr7_1:75499734-75499753 Msa1038600:intron 40.0%
! TTCCCATTTGGGTTATTCCT+GGG - chr7_1:75499735-75499754 Msa1038600:intron 40.0%
! AGAAAGAGGTACATAGACTG+GGG + chr7_1:75499776-75499795 None:intergenic 40.0%
AAGTGTGGTGGTTTCATTGT+GGG - chr7_1:75500217-75500236 Msa1038600:intron 40.0%
GTAAACTGGAACCATGCAAT+TGG - chr7_1:75500241-75500260 Msa1038600:intron 40.0%
CATGAATGTATGGGCAGAAA+TGG - chr7_1:75500288-75500307 Msa1038600:intron 40.0%
AACCTTCCATTCAACCAGTA+TGG - chr7_1:75500326-75500345 Msa1038600:intron 40.0%
! CAAATGTACTGCATTGACGA+AGG + chr7_1:75500531-75500550 None:intergenic 40.0%
AATATCCATCAAGTGGCGAA+TGG + chr7_1:75500666-75500685 None:intergenic 40.0%
! TCGCCACTTGATGGATATTA+TGG - chr7_1:75500667-75500686 Msa1038600:CDS 40.0%
! TGGTAACTGTTTTGCTTTCC+CGG - chr7_1:75500687-75500706 Msa1038600:CDS 40.0%
! AAACCCTTTAGGTTATGCAG+TGG - chr7_1:75500741-75500760 Msa1038600:CDS 40.0%
GCATTCTTTGGCAGATCTTA+TGG - chr7_1:75500807-75500826 Msa1038600:CDS 40.0%
ATATACGTAGCTCCAGGTAA+AGG + chr7_1:75500967-75500986 None:intergenic 40.0%
AAACTAGGACCAATCGTTGT+AGG + chr7_1:75501108-75501127 None:intergenic 40.0%
! AGTTTAACTTCGCGAGGAGT+GGG + chr7_1:75497690-75497709 None:intergenic 45.0%
! TAGTTTAACTTCGCGAGGAG+TGG + chr7_1:75497691-75497710 None:intergenic 45.0%
GGGTCTTTCTCTACCATTGA+TGG + chr7_1:75497783-75497802 None:intergenic 45.0%
GGTAGAGAAAGACCCTGTTA+AGG - chr7_1:75497788-75497807 Msa1038600:CDS 45.0%
ATCCACTTGCGGGAAGAATT+AGG - chr7_1:75497850-75497869 Msa1038600:CDS 45.0%
TCCACTTGCGGGAAGAATTA+GGG - chr7_1:75497851-75497870 Msa1038600:CDS 45.0%
AAGAATTAGGGAGGGAGCTA+GGG - chr7_1:75497863-75497882 Msa1038600:CDS 45.0%
!! ATGGTGGATTGTACTGGTGA+AGG - chr7_1:75497894-75497913 Msa1038600:CDS 45.0%
TTCTTGGAAGCAAGGGAATG+GGG + chr7_1:75497982-75498001 None:intergenic 45.0%
GTTCTTGGAAGCAAGGGAAT+GGG + chr7_1:75497983-75498002 None:intergenic 45.0%
AGTTCTTGGAAGCAAGGGAA+TGG + chr7_1:75497984-75498003 None:intergenic 45.0%
GCTAGGCCAGCAAAACATTA+AGG + chr7_1:75498089-75498108 None:intergenic 45.0%
CTTCTTGCCTGTTAGTTGAG+AGG + chr7_1:75498518-75498537 None:intergenic 45.0%
ATGAGTTAGAGAGAGGTCAG+AGG + chr7_1:75498741-75498760 None:intergenic 45.0%
CAAACAGATCGGAGGATAAC+AGG + chr7_1:75498897-75498916 None:intergenic 45.0%
CTGTTATCCTCCGATCTGTT+TGG - chr7_1:75498895-75498914 Msa1038600:intron 45.0%
! CTGTTTGGTTCCTTGGTTGA+CGG - chr7_1:75498910-75498929 Msa1038600:intron 45.0%
AAGTAGACAAGGTAGCACAG+CGG + chr7_1:75499035-75499054 None:intergenic 45.0%
CACGAAGCTTCAAGTAGACA+AGG + chr7_1:75499046-75499065 None:intergenic 45.0%
CTTGTCTACTTGAAGCTTCG+TGG - chr7_1:75499044-75499063 Msa1038600:intron 45.0%
ACTGCAGATCTCAACAGATC+TGG + chr7_1:75499183-75499202 None:intergenic 45.0%
! GTTGAGATCTGCAGTTTTCC+TGG - chr7_1:75499188-75499207 Msa1038600:intron 45.0%
! TGTCGTTGTTGTTAGACTGG+TGG - chr7_1:75499310-75499329 Msa1038600:intron 45.0%
! GTCGTTGTTGTTAGACTGGT+GGG - chr7_1:75499311-75499330 Msa1038600:intron 45.0%
TGTTGTTAGACTGGTGGGAT+CGG - chr7_1:75499316-75499335 Msa1038600:intron 45.0%
!! GATCGGATTTGGCCTTTTTG+CGG - chr7_1:75499333-75499352 Msa1038600:intron 45.0%
CTGGTGTTCAATAACCCGAA+AGG - chr7_1:75499360-75499379 Msa1038600:intron 45.0%
TTCAATAACCCGAAAGGGTC+TGG - chr7_1:75499366-75499385 Msa1038600:intron 45.0%
TATACGAACCAGACCCTTTC+GGG + chr7_1:75499377-75499396 None:intergenic 45.0%
! TCTGGTTCGTATAACCCGAA+AGG - chr7_1:75499384-75499403 Msa1038600:intron 45.0%
! CTGGTTCGTATAACCCGAAA+GGG - chr7_1:75499385-75499404 Msa1038600:intron 45.0%
TATACGAACCAGACCCTTTC+GGG + chr7_1:75499377-75499396 None:intergenic 45.0%
! TCTGGTTCGTATAACCCGAA+AGG - chr7_1:75499384-75499403 Msa1038600:intron 45.0%
! CTGGTTCGTATAACCCGAAA+GGG - chr7_1:75499385-75499404 Msa1038600:intron 45.0%
! TGGATTTTGTACCGTGTTGG+CGG - chr7_1:75499537-75499556 Msa1038600:intron 45.0%
GACCCAGGAATAACCCAAAT+GGG + chr7_1:75499740-75499759 None:intergenic 45.0%
TGACCCAGGAATAACCCAAA+TGG + chr7_1:75499741-75499760 None:intergenic 45.0%
! ATTTGGGTTATTCCTGGGTC+AGG - chr7_1:75499740-75499759 Msa1038600:intron 45.0%
! AAAGAGGTACATAGACTGGG+GGG + chr7_1:75499774-75499793 None:intergenic 45.0%
! GAAAGAGGTACATAGACTGG+GGG + chr7_1:75499775-75499794 None:intergenic 45.0%
CAAGTGTGGTGGTTTCATTG+TGG - chr7_1:75500216-75500235 Msa1038600:intron 45.0%
GTTTCATTGTGGGCGTAAAC+TGG - chr7_1:75500227-75500246 Msa1038600:intron 45.0%
! CTGCATTGACGAAGGTGAAA+TGG + chr7_1:75500523-75500542 None:intergenic 45.0%
GCATCGTTAATGCACGTTCA+AGG - chr7_1:75500629-75500648 Msa1038600:intron 45.0%
AAGCTTTGCGGAAACCCTTT+AGG - chr7_1:75500730-75500749 Msa1038600:CDS 45.0%
! AGTGAATTTTGGATGGGGTG+AGG - chr7_1:75500906-75500925 Msa1038600:CDS 45.0%
! GTGTATGGTGGAGTGGTAAA+AGG - chr7_1:75500931-75500950 Msa1038600:CDS 45.0%
! TATGGTGGAGTGGTAAAAGG+TGG - chr7_1:75500934-75500953 Msa1038600:CDS 45.0%
! ATGGTGGAGTGGTAAAAGGT+GGG - chr7_1:75500935-75500954 Msa1038600:CDS 45.0%
GGGATTATATACGTAGCTCC+AGG + chr7_1:75500973-75500992 None:intergenic 45.0%
!! AAAATTAAAATTTAAAAGTA+AGG + chr7_1:75498173-75498192 None:intergenic 5.0%
!!! AAATGATTTAATTTATTATA+TGG - chr7_1:75499956-75499975 Msa1038600:intron 5.0%
TGTTAATGTTCACAGCGCGG+AGG - chr7_1:75497634-75497653 Msa1038600:CDS 50.0%
TCCCTAATTCTTCCCGCAAG+TGG + chr7_1:75497855-75497874 None:intergenic 50.0%
ACTTGCGGGAAGAATTAGGG+AGG - chr7_1:75497854-75497873 Msa1038600:CDS 50.0%
CTTGCGGGAAGAATTAGGGA+GGG - chr7_1:75497855-75497874 Msa1038600:CDS 50.0%
GAAGAATTAGGGAGGGAGCT+AGG - chr7_1:75497862-75497881 Msa1038600:CDS 50.0%
!! AGCTAGGGACAAGTTGATGG+TGG - chr7_1:75497878-75497897 Msa1038600:CDS 50.0%
TCTTGGAAGCAAGGGAATGG+GGG + chr7_1:75497981-75498000 None:intergenic 50.0%
GGGGAAGATGAGTTAGAGAG+AGG + chr7_1:75498748-75498767 None:intergenic 50.0%
! ATTAGCTTGGGGAGAACCAG+CGG + chr7_1:75498769-75498788 None:intergenic 50.0%
! TTTTCCGATGTAGACCTCGC+AGG - chr7_1:75498801-75498820 Msa1038600:intron 50.0%
CAAGGAACCAAACAGATCGG+AGG + chr7_1:75498905-75498924 None:intergenic 50.0%
! CTCCGATCTGTTTGGTTCCT+TGG - chr7_1:75498903-75498922 Msa1038600:intron 50.0%
ATGGGGTTCGTTTAGGTGGT+CGG - chr7_1:75499001-75499020 Msa1038600:intron 50.0%
GTCTACTTGAAGCTTCGTGG+TGG - chr7_1:75499047-75499066 Msa1038600:intron 50.0%
TACTTGAAGCTTCGTGGTGG+TGG - chr7_1:75499050-75499069 Msa1038600:intron 50.0%
! TTTGCGGTCTCTTTGGTGGT+GGG - chr7_1:75499073-75499092 Msa1038600:intron 50.0%
! TGGTGGGTCGTTGCTAAACA+GGG - chr7_1:75499089-75499108 Msa1038600:intron 50.0%
CAGAGATCGAAGGTTGAGCA+AGG + chr7_1:75499153-75499172 None:intergenic 50.0%
CTTGCTCAACCTTCGATCTC+TGG - chr7_1:75499151-75499170 Msa1038600:intron 50.0%
GCAGATCTCAACAGATCTGG+AGG + chr7_1:75499180-75499199 None:intergenic 50.0%
TAGACTGGTGGGATCGGATT+TGG - chr7_1:75499322-75499341 Msa1038600:intron 50.0%
AACACCAGTCCACCGCAAAA+AGG + chr7_1:75499348-75499367 None:intergenic 50.0%
TCGTATAACCCGAAAGGGTC+TGG - chr7_1:75499390-75499409 Msa1038600:intron 50.0%
TCGTATAACCCGAAAGGGTC+TGG - chr7_1:75499390-75499409 Msa1038600:intron 50.0%
TTCGAGCGAAACAACGCGTT+AGG + chr7_1:75499475-75499494 None:intergenic 50.0%
CAGATCACACGTCTCAAGTG+TGG - chr7_1:75500202-75500221 Msa1038600:intron 50.0%
ATCACACGTCTCAAGTGTGG+TGG - chr7_1:75500205-75500224 Msa1038600:intron 50.0%
CTGTTGCATCGCCAATTGCA+TGG + chr7_1:75500255-75500274 None:intergenic 50.0%
CATGCAATTGGCGATGCAAC+AGG - chr7_1:75500253-75500272 Msa1038600:intron 50.0%
! CGCCATACTGGTTGAATGGA+AGG + chr7_1:75500331-75500350 None:intergenic 50.0%
! TCTGCGCCATACTGGTTGAA+TGG + chr7_1:75500335-75500354 None:intergenic 50.0%
ATGGCGCAGAGAGATCCTAA+TGG - chr7_1:75500345-75500364 Msa1038600:intron 50.0%
GGTTGCAAGTAATGCGTGGA+GGG + chr7_1:75500378-75500397 None:intergenic 50.0%
TGGTTGCAAGTAATGCGTGG+AGG + chr7_1:75500379-75500398 None:intergenic 50.0%
CGATGGTTGCAAGTAATGCG+TGG + chr7_1:75500382-75500401 None:intergenic 50.0%
GCTAACCATTCGCCACTTGA+TGG - chr7_1:75500658-75500677 Msa1038600:intron 50.0%
! GAATTTTGGATGGGGTGAGG+CGG - chr7_1:75500909-75500928 Msa1038600:CDS 50.0%
TGGTGGAGTGGTAAAAGGTG+GGG - chr7_1:75500936-75500955 Msa1038600:CDS 50.0%
! GGGAGCTAGGGACAAGTTGA+TGG - chr7_1:75497875-75497894 Msa1038600:CDS 55.0%
AAGCAAGGGAATGGGGGATG+AGG + chr7_1:75497975-75497994 None:intergenic 55.0%
CTCTAACTCATCTTCCCCGC+TGG - chr7_1:75498750-75498769 Msa1038600:intron 55.0%
! TTAGCTTGGGGAGAACCAGC+GGG + chr7_1:75498768-75498787 None:intergenic 55.0%
ACCACCTGCGAGGTCTACAT+CGG + chr7_1:75498808-75498827 None:intergenic 55.0%
CAGGAAACCGAGGATCACAC+CGG + chr7_1:75498878-75498897 None:intergenic 55.0%
CGGAGGATAACAGGAAACCG+AGG + chr7_1:75498888-75498907 None:intergenic 55.0%
CAGCAACACACCGTCAACCA+AGG + chr7_1:75498923-75498942 None:intergenic 55.0%
TGTTCTCGCGAGTTCGTTCG+TGG - chr7_1:75498943-75498962 Msa1038600:intron 55.0%
CTAAACGAACCCCATCCCTC+CGG + chr7_1:75498996-75499015 None:intergenic 55.0%
AGGGATGGGGTTCGTTTAGG+TGG - chr7_1:75498997-75499016 Msa1038600:intron 55.0%
TTCGTTTAGGTGGTCGGTGG+CGG - chr7_1:75499007-75499026 Msa1038600:intron 55.0%
!! AGCTTCGTGGTGGTGGTTTG+CGG - chr7_1:75499057-75499076 Msa1038600:intron 55.0%
! GTGGTGGTTTGCGGTCTCTT+TGG - chr7_1:75499066-75499085 Msa1038600:intron 55.0%
! GTGGTTTGCGGTCTCTTTGG+TGG - chr7_1:75499069-75499088 Msa1038600:intron 55.0%
GTTTGCGGTCTCTTTGGTGG+TGG - chr7_1:75499072-75499091 Msa1038600:intron 55.0%
!! GTGGTGGGTCGTTGCTAAAC+AGG - chr7_1:75499088-75499107 Msa1038600:intron 55.0%
TGGAGGAGACCAGAGATCGA+AGG + chr7_1:75499163-75499182 None:intergenic 55.0%
GTGGCAGCGAAACAACAACC+AGG + chr7_1:75499209-75499228 None:intergenic 55.0%
!! CGGATTTGGCCTTTTTGCGG+TGG - chr7_1:75499336-75499355 Msa1038600:intron 55.0%
!! TTGGCCTTTTTGCGGTGGAC+TGG - chr7_1:75499341-75499360 Msa1038600:intron 55.0%
GTCAGCAACCAGACCCTTTC+GGG + chr7_1:75499425-75499444 None:intergenic 55.0%
CGTCAGCAACCAGACCCTTT+CGG + chr7_1:75499426-75499445 None:intergenic 55.0%
GGGTCTGGTTGCTGACGTAT+TGG - chr7_1:75499429-75499448 Msa1038600:intron 55.0%
CGCGTTAGGACTCAGATCGA+GGG + chr7_1:75499461-75499480 None:intergenic 55.0%
ACGCGTTAGGACTCAGATCG+AGG + chr7_1:75499462-75499481 None:intergenic 55.0%
GCTGTCTATCAGGGAGCTGT+TGG - chr7_1:75499510-75499529 Msa1038600:intron 55.0%
ATCAGGGAGCTGTTGGCACT+TGG - chr7_1:75499517-75499536 Msa1038600:intron 55.0%
GAATGGATCGACCGCCAACA+CGG + chr7_1:75499551-75499570 None:intergenic 55.0%
GTATGGGCAGAAATGGCTCG+AGG - chr7_1:75500295-75500314 Msa1038600:intron 55.0%
AGGATCTCTCTGCGCCATAC+TGG + chr7_1:75500343-75500362 None:intergenic 55.0%
GTGGAGGGTCTCTTGCCATT+AGG + chr7_1:75500363-75500382 None:intergenic 55.0%
GTTTCCGCAAAGCTTCCCTG+CGG + chr7_1:75500725-75500744 None:intergenic 55.0%
CTGGTGGCACCAACTCTGGT+TGG + chr7_1:75497662-75497681 None:intergenic 60.0%
ACAGCTGGTGGCACCAACTC+TGG + chr7_1:75497666-75497685 None:intergenic 60.0%
TAGCTTGGGGAGAACCAGCG+GGG + chr7_1:75498767-75498786 None:intergenic 60.0%
TCCGATGTAGACCTCGCAGG+TGG - chr7_1:75498804-75498823 Msa1038600:intron 60.0%
GATGTAGACCTCGCAGGTGG+TGG - chr7_1:75498807-75498826 Msa1038600:intron 60.0%
TTCCCTGCCGGTGTGATCCT+CGG - chr7_1:75498868-75498887 Msa1038600:intron 60.0%
AACCGAGGATCACACCGGCA+GGG + chr7_1:75498873-75498892 None:intergenic 60.0%
AAACCGAGGATCACACCGGC+AGG + chr7_1:75498874-75498893 None:intergenic 60.0%
TCTCGCGAGTTCGTTCGTGG+CGG - chr7_1:75498946-75498965 Msa1038600:intron 60.0%
CACGGTTTCGTGGGTCTTGC+CGG - chr7_1:75498974-75498993 Msa1038600:intron 60.0%
GTTTCGTGGGTCTTGCCGGA+GGG - chr7_1:75498978-75498997 Msa1038600:intron 60.0%
CGGAGGGATGGGGTTCGTTT+AGG - chr7_1:75498994-75499013 Msa1038600:intron 60.0%
GGGTTCGTTTAGGTGGTCGG+TGG - chr7_1:75499004-75499023 Msa1038600:intron 60.0%
TTGTTTCGCTGCCACCGCGT+CGG - chr7_1:75499214-75499233 Msa1038600:intron 60.0%
AGCCTCCAAGAACTCCGACG+CGG + chr7_1:75499231-75499250 None:intergenic 60.0%
AACCCAGCGAACCTGCGTAC+AGG + chr7_1:75499642-75499661 None:intergenic 60.0%
ACCACCGCAGGGAAGCTTTG+CGG - chr7_1:75500718-75500737 Msa1038600:CDS 60.0%
! TGAGGCGGTGTATGGTGGAG+TGG - chr7_1:75500924-75500943 Msa1038600:CDS 60.0%
GGAGTGGTAAAAGGTGGGGC+TGG - chr7_1:75500940-75500959 Msa1038600:CDS 60.0%
!! GCGGAGGTGCCAACCAGAGT+TGG - chr7_1:75497650-75497669 Msa1038600:CDS 65.0%
CGAGGAGTGGGTACAGCTGG+TGG + chr7_1:75497678-75497697 None:intergenic 65.0%
TCGCGAGGAGTGGGTACAGC+TGG + chr7_1:75497681-75497700 None:intergenic 65.0%
GCAGGGAAGAGGCGATCTGG+TGG + chr7_1:75498856-75498875 None:intergenic 65.0%
CCAGATCGCCTCTTCCCTGC+CGG - chr7_1:75498856-75498875 Msa1038600:intron 65.0%
GGATCACACCGGCAGGGAAG+AGG + chr7_1:75498867-75498886 None:intergenic 65.0%
TCGTTCGTGGCGGTGCAGCA+CGG - chr7_1:75498956-75498975 Msa1038600:intron 65.0%
GCGGTGCAGCACGGTTTCGT+GGG - chr7_1:75498965-75498984 Msa1038600:intron 65.0%
GGTTTCGTGGGTCTTGCCGG+AGG - chr7_1:75498977-75498996 Msa1038600:intron 65.0%
GTGGGTCTTGCCGGAGGGAT+GGG - chr7_1:75498983-75499002 Msa1038600:intron 65.0%
TGGGTCTTGCCGGAGGGATG+GGG - chr7_1:75498984-75499003 Msa1038600:intron 65.0%
TGCCACCGCGTCGGAGTTCT+TGG - chr7_1:75499223-75499242 Msa1038600:intron 65.0%
CTCCAAGAACTCCGACGCGG+TGG + chr7_1:75499228-75499247 None:intergenic 65.0%
CACCGCGTCGGAGTTCTTGG+AGG - chr7_1:75499226-75499245 Msa1038600:intron 65.0%
CTGCGTACAGGCGCGAAACC+AGG + chr7_1:75499630-75499649 None:intergenic 65.0%
CTGGTTTCGCGCCTGTACGC+AGG - chr7_1:75499628-75499647 Msa1038600:intron 65.0%
CGCCTGTACGCAGGTTCGCT+GGG - chr7_1:75499637-75499656 Msa1038600:intron 65.0%
GGGGACATGAGACCTGACCC+AGG + chr7_1:75499755-75499774 None:intergenic 65.0%
TCCGCAAAGCTTCCCTGCGG+TGG + chr7_1:75500722-75500741 None:intergenic 65.0%
GGATGGGGTGAGGCGGTGTA+TGG - chr7_1:75500916-75500935 Msa1038600:CDS 65.0%
TGGGGTGAGGCGGTGTATGG+TGG - chr7_1:75500919-75500938 Msa1038600:CDS 65.0%
GGTGGGGCTGGACCTTTACC+TGG - chr7_1:75500952-75500971 Msa1038600:CDS 65.0%
TCGTCGCACCACCACCTGCG+AGG + chr7_1:75498818-75498837 None:intergenic 70.0%
CCGGCAGGGAAGAGGCGATC+TGG + chr7_1:75498859-75498878 None:intergenic 70.0%
GGCGGTGCAGCACGGTTTCG+TGG - chr7_1:75498964-75498983 Msa1038600:intron 70.0%
CGTGGGTCTTGCCGGAGGGA+TGG - chr7_1:75498982-75499001 Msa1038600:intron 70.0%
GCGCCTGTACGCAGGTTCGC+TGG - chr7_1:75499636-75499655 Msa1038600:intron 70.0%
CTGCGGTGGTGACAGCAGCC+GGG + chr7_1:75500708-75500727 None:intergenic 70.0%
CCTGCGGTGGTGACAGCAGC+CGG + chr7_1:75500709-75500728 None:intergenic 70.0%
CGGCTGCTGTCACCACCGCA+GGG - chr7_1:75500707-75500726 Msa1038600:CDS 70.0%
CCGGCTGCTGTCACCACCGC+AGG - chr7_1:75500706-75500725 Msa1038600:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75497574 75501146 75497574 ID=Msa1038600;Name=Msa1038600
chr7_1 mRNA 75497574 75501146 75497574 ID=Msa1038600-mRNA-1;Parent=Msa1038600;Name=Msa1038600-mRNA-1;_AED=0.38;_eAED=0.38;_QI=47|1|0.5|1|1|1|2|0|460
chr7_1 exon 75497574 75498515 75497574 ID=Msa1038600-mRNA-1:exon:19309;Parent=Msa1038600-mRNA-1
chr7_1 exon 75500659 75501146 75500659 ID=Msa1038600-mRNA-1:exon:19308;Parent=Msa1038600-mRNA-1
chr7_1 five_prime_UTR 75501100 75501146 75501100 ID=Msa1038600-mRNA-1:five_prime_utr;Parent=Msa1038600-mRNA-1
chr7_1 CDS 75500659 75501099 75500659 ID=Msa1038600-mRNA-1:cds;Parent=Msa1038600-mRNA-1
chr7_1 CDS 75497574 75498515 75497574 ID=Msa1038600-mRNA-1:cds;Parent=Msa1038600-mRNA-1
Gene Sequence

>Msa1038600

ATGACTTCGTCATTGTTAATGTTCACAGCGCGGAGGTGCCAACCAGAGTTGGTGCCACCAGCTGTACCCACTCCTCGCGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGTTTGCGTTTCAATATGCCTATTATATTTATCTATCGTTACGAACCATCAATGGTAGAGAAAGACCCTGTTAAGGTTCTTAAATGTGCACTCTCAAAAACACTTGTTTATTACTATCCACTTGCGGGAAGAATTAGGGAGGGAGCTAGGGACAAGTTGATGGTGGATTGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATGAATTTGGTGATGTACCTCATCCCCCATTCCCTTGCTTCCAAGAACTCATATACGATGTTCCAGGCACGAAACAAATTATTGATCATCCTATTCTGTTCATACAGATCACACGTCTCAAGTGTGGTGGTTTCATTGTGGGCGTAAACTGGAACCATGCAATTGGCGATGCAACAGGTTTGAAACAATTCATGAATGTATGGGCAGAAATGGCTCGAGGTGCACATCAACCTTCCATTCAACCAGTATGGCGCAGAGAGATCCTAATGGCAAGAGACCCTCCACGCATTACTTGCAACCATCGTGAATACCAACAAATACTTCCGTCAAATATCAACAAGGAAGAAGATAATGTTGCTACCATAGTCCATCAATCTTTCTTCTTTACACTTTCTCACATATCTGCAATTCGTCACTTGATTCCATTTCACCTTCGTCAATGCAGTACATTTGATCTTATCACTGCATGTTTTTGGTGTTGTCGCACAAAAGCATTACAGTTAGAGCCAGATGAAGAAGTACAAATGATGTGCATCGTTAATGCACGTTCAAGGTTTAGGGCTAACCATTCGCCACTTGATGGATATTATGGTAACTGTTTTGCTTTCCCGGCTGCTGTCACCACCGCAGGGAAGCTTTGCGGAAACCCTTTAGGTTATGCAGTGGAAATGATAAGAAAAGCAAAAGCTGAAGTTACAGAAGAATACATGCATTCTTTGGCAGATCTTATGGTTATTAAGGAACGATGTTTATTTACAACAATAAGAGCATGTGTTGTATCAGACTTGACTCGTGCTAAGTACTCAGAAGTGAATTTTGGATGGGGTGAGGCGGTGTATGGTGGAGTGGTAAAAGGTGGGGCTGGACCTTTACCTGGAGCTACGTATATAATCCCACATAAGAATGCAAAAGGAGAAGAAGGTTTGATATTGCTATTTTTCTTAACCTCTGAAGTTATGAAGAGGTTTGCTGAAGAGTTAGATAAGATGTTTGGTAACCAAAATCAACCTACAACGATTGGTCCTAGTTTTGTCATCTCTACCTTATAG

Protein sequence

>Msa1038600

MTSSLLMFTARRCQPELVPPAVPTPREVKLLSDIDDQEGLRFNMPIIFIYRYEPSMVEKDPVKVLKCALSKTLVYYYPLAGRIREGARDKLMVDCTGEGVMFIEAEADVTLDEFGDVPHPPFPCFQELIYDVPGTKQIIDHPILFIQITRLKCGGFIVGVNWNHAIGDATGLKQFMNVWAEMARGAHQPSIQPVWRREILMARDPPRITCNHREYQQILPSNINKEEDNVATIVHQSFFFTLSHISAIRHLIPFHLRQCSTFDLITACFWCCRTKALQLEPDEEVQMMCIVNARSRFRANHSPLDGYYGNCFAFPAAVTTAGKLCGNPLGYAVEMIRKAKAEVTEEYMHSLADLMVIKERCLFTTIRACVVSDLTRAKYSEVNFGWGEAVYGGVVKGGAGPLPGATYIIPHKNAKGEEGLILLFFLTSEVMKRFAEELDKMFGNQNQPTTIGPSFVISTL*