AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0670490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670490 MtrunA17_Chr4g0009641 90.021 471 20 3 1 469 1 446 0.0 863
Msa0670490 MtrunA17_Chr4g0009701 84.501 471 70 2 1 469 1 470 0.0 818
Msa0670490 MtrunA17_Chr4g0009661 83.864 471 73 2 1 469 1 470 0.0 813
Msa0670490 MtrunA17_Chr4g0009651 83.439 471 75 2 1 469 1 470 0.0 803
Msa0670490 MtrunA17_Chr4g0009681 82.051 468 81 2 4 469 1 467 0.0 800
Msa0670490 MtrunA17_Chr4g0009711 79.830 471 92 2 1 469 1 470 0.0 783
Msa0670490 MtrunA17_Chr4g0009671 80.000 425 83 1 47 469 11 435 0.0 707
Msa0670490 MtrunA17_Chr4g0009721 72.222 468 79 4 4 469 1 419 0.0 684
Msa0670490 MtrunA17_Chr2g0285351 59.870 461 175 6 18 469 10 469 0.0 575
Msa0670490 MtrunA17_Chr3g0133011 59.957 467 170 7 20 469 30 496 0.0 573
Msa0670490 MtrunA17_Chr2g0285371 59.243 449 174 6 29 469 22 469 0.0 547
Msa0670490 MtrunA17_Chr2g0285381 60.134 449 163 8 29 469 25 465 0.0 541
Msa0670490 MtrunA17_Chr3g0093971 39.130 460 256 10 15 465 6 450 4.26e-116 348
Msa0670490 MtrunA17_Chr8g0338461 37.675 499 267 11 10 469 2 495 1.18e-113 343
Msa0670490 MtrunA17_Chr7g0234051 36.730 471 255 10 39 469 28 495 6.05e-109 331
Msa0670490 MtrunA17_Chr7g0249431 36.217 497 257 13 19 464 6 493 1.71e-108 330
Msa0670490 MtrunA17_Chr7g0234041 34.498 458 222 13 30 433 16 449 3.96e-81 259
Msa0670490 MtrunA17_Chr4g0038311 30.388 464 296 15 19 469 13 462 6.02e-57 195
Msa0670490 MtrunA17_Chr2g0309511 31.090 431 270 12 44 464 43 456 1.77e-55 191
Msa0670490 MtrunA17_Chr2g0309521 31.678 423 258 15 44 454 43 446 1.18e-53 187
Msa0670490 MtrunA17_Chr2g0309541 30.892 437 267 17 44 465 42 458 1.68e-53 186
Msa0670490 MtrunA17_Chr2g0281621 31.151 443 267 19 41 464 36 459 1.03e-52 184
Msa0670490 MtrunA17_Chr2g0318911 29.783 460 288 16 17 465 23 458 1.93e-52 183
Msa0670490 MtrunA17_Chr1g0199991 30.085 472 293 17 12 466 1 452 4.03e-52 182
Msa0670490 MtrunA17_Chr8g0385871 29.956 454 281 15 34 469 27 461 4.97e-52 182
Msa0670490 MtrunA17_Chr3g0131731 28.634 454 283 14 37 469 27 460 7.67e-52 182
Msa0670490 MtrunA17_Chr3g0090331 29.025 441 277 16 40 469 74 489 9.82e-52 182
Msa0670490 MtrunA17_Chr1g0199971 28.970 466 296 16 16 466 7 452 1.00e-51 181
Msa0670490 MtrunA17_Chr3g0094811 27.941 476 296 15 13 469 6 453 1.57e-51 181
Msa0670490 MtrunA17_Chr3g0126051 28.541 466 294 18 19 464 11 457 1.00e-50 179
Msa0670490 MtrunA17_Chr4g0020241 31.448 442 263 17 40 469 73 486 2.92e-50 178
Msa0670490 MtrunA17_Chr2g0304931 28.261 460 275 14 29 464 28 456 1.11e-49 176
Msa0670490 MtrunA17_Chr7g0219051 28.266 467 303 16 19 469 13 463 1.52e-49 176
Msa0670490 MtrunA17_Chr3g0126031 28.959 442 276 15 41 464 29 450 1.87e-49 175
Msa0670490 MtrunA17_Chr4g0047861 30.317 442 274 18 41 464 54 479 2.21e-49 176
Msa0670490 MtrunA17_Chr7g0221551 26.964 471 307 12 16 469 6 456 1.87e-48 172
Msa0670490 MtrunA17_Chr3g0118851 29.452 438 266 17 40 464 77 484 4.22e-48 172
Msa0670490 MtrunA17_Chr5g0431301 28.027 446 281 17 41 465 30 456 3.55e-47 169
Msa0670490 MtrunA17_Chr4g0068841 27.197 478 304 16 17 465 10 472 4.42e-47 169
Msa0670490 MtrunA17_Chr3g0118841 28.736 435 272 15 40 464 78 484 4.96e-47 169
Msa0670490 MtrunA17_Chr1g0153881 29.234 431 271 13 40 464 89 491 5.86e-47 169
Msa0670490 MtrunA17_Chr3g0118831 28.406 433 246 15 40 464 77 453 1.62e-45 164
Msa0670490 MtrunA17_Chr3g0118881 28.251 446 269 18 40 464 77 492 1.77e-43 160
Msa0670490 MtrunA17_Chr1g0153941 26.752 471 283 18 28 464 64 506 5.01e-42 156
Msa0670490 MtrunA17_Chr3g0118891 28.111 434 244 16 40 464 77 451 9.69e-42 154
Msa0670490 MtrunA17_Chr4g0028281 27.273 407 258 11 70 464 109 489 1.07e-40 152
Msa0670490 MtrunA17_Chr2g0281641 28.607 402 251 15 88 469 1 386 2.28e-40 149
Msa0670490 MtrunA17_Chr4g0028261 27.896 423 261 14 57 464 120 513 9.42e-40 150
Msa0670490 MtrunA17_Chr3g0118861 27.477 444 247 17 40 464 75 462 9.61e-40 149
Msa0670490 MtrunA17_Chr4g0068861 27.842 431 278 17 17 425 57 476 1.53e-39 149
Msa0670490 MtrunA17_Chr2g0279371 38.579 197 98 4 16 211 9 183 6.27e-39 139
Msa0670490 MtrunA17_Chr4g0028241 29.594 419 237 17 70 464 103 487 5.15e-38 144
Msa0670490 MtrunA17_Chr2g0327401 26.290 407 263 12 70 464 114 495 1.01e-37 144
Msa0670490 MtrunA17_Chr4g0028271 27.896 423 260 12 57 464 99 491 2.05e-37 143
Msa0670490 MtrunA17_Chr1g0171411 27.586 406 257 13 70 463 97 477 1.10e-35 138
Msa0670490 MtrunA17_Chr1g0204191 26.915 457 249 19 40 469 91 489 5.13e-35 136
Msa0670490 MtrunA17_Chr2g0279381 34.272 213 125 5 225 427 4 211 5.72e-33 124
Msa0670490 MtrunA17_Chr1g0199171 27.737 411 249 16 70 463 104 483 1.15e-32 130
Msa0670490 MtrunA17_Chr5g0447441 25.282 443 266 17 47 464 30 432 4.34e-32 127
Msa0670490 MtrunA17_Chr2g0327371 24.891 458 281 16 44 464 79 510 2.86e-30 123
Msa0670490 MtrunA17_Chr2g0327381 40.741 162 89 5 70 229 108 264 3.61e-28 117
Msa0670490 MtrunA17_Chr2g0285401 70.968 62 18 0 372 433 29 90 8.31e-26 100
Msa0670490 MtrunA17_Chr1g0153931 33.166 199 122 8 28 221 62 254 1.80e-25 105
Msa0670490 MtrunA17_Chr4g0044051 24.941 425 267 15 57 464 47 436 2.64e-25 108
Msa0670490 MtrunA17_Chr1g0165811 31.780 236 138 9 40 269 30 248 8.33e-25 103
Msa0670490 MtrunA17_Chr1g0165821 33.094 139 84 3 333 464 36 172 7.79e-21 89.7
Msa0670490 MtrunA17_Chr1g0153921 27.826 230 144 8 236 464 2 210 1.22e-18 84.7
Msa0670490 MtrunA17_Chr6g0457241 55.556 54 24 0 396 449 3 56 2.13e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670490 AT5G09640.1 52.903 465 199 11 20 469 6 465 7.30e-168 481
Msa0670490 AT2G22970.1 53.620 442 175 6 33 469 17 433 3.64e-164 471
Msa0670490 AT2G23000.1 52.370 443 186 8 31 469 16 437 8.64e-162 464
Msa0670490 AT2G23000.2 52.370 443 186 8 31 469 16 437 8.64e-162 464
Msa0670490 AT2G22920.2 53.725 443 173 9 30 465 14 431 7.62e-161 462
Msa0670490 AT2G23010.1 51.648 455 196 7 19 469 3 437 2.77e-160 461
Msa0670490 AT2G23010.2 51.648 455 196 7 19 469 3 437 3.37e-160 461
Msa0670490 AT2G22980.1 52.252 444 176 10 32 469 17 430 9.68e-160 459
Msa0670490 AT1G33540.1 51.927 441 201 8 38 469 26 464 3.03e-159 459
Msa0670490 AT2G22990.1 49.887 441 194 8 33 469 16 433 1.34e-156 451
Msa0670490 AT3G10450.1 51.259 437 183 8 38 469 26 437 6.39e-156 450
Msa0670490 AT1G73270.2 52.036 442 181 9 33 469 26 441 1.38e-155 449
Msa0670490 AT1G73270.1 52.036 442 181 9 33 469 26 441 2.33e-155 449
Msa0670490 AT1G73300.1 50.337 445 184 9 33 469 26 441 4.62e-155 447
Msa0670490 AT1G73300.2 50.337 445 184 9 33 469 26 441 4.62e-155 447
Msa0670490 AT5G36180.1 51.011 445 181 10 33 469 26 441 3.78e-154 445
Msa0670490 AT2G22970.4 53.237 417 166 5 33 444 17 409 5.86e-154 444
Msa0670490 AT2G22970.3 53.110 418 167 5 33 445 17 410 1.37e-153 444
Msa0670490 AT1G73310.1 51.131 442 185 8 33 469 26 441 3.16e-153 443
Msa0670490 AT1G73280.1 48.899 454 202 7 21 469 13 441 4.01e-153 442
Msa0670490 AT1G73290.1 51.474 441 183 10 33 469 25 438 5.61e-153 442
Msa0670490 AT3G12203.3 51.487 437 181 8 38 469 6 416 1.13e-152 441
Msa0670490 AT3G12203.1 49.891 459 199 8 16 469 5 437 1.28e-152 441
Msa0670490 AT3G12240.1 50.229 436 187 8 39 469 26 436 1.16e-150 436
Msa0670490 AT2G22990.5 48.980 441 189 9 33 469 16 424 2.22e-150 435
Msa0670490 AT1G33540.2 51.429 420 193 8 59 469 4 421 1.59e-149 433
Msa0670490 AT2G22980.2 51.551 419 168 9 32 444 17 406 4.81e-149 431
Msa0670490 AT2G22980.4 51.435 418 168 9 32 443 17 405 4.87e-148 429
Msa0670490 AT3G12230.1 49.539 434 193 7 39 469 25 435 5.50e-148 429
Msa0670490 AT3G12220.1 50.231 432 185 8 39 465 25 431 1.03e-145 424
Msa0670490 AT2G22990.3 48.926 419 188 7 33 447 16 412 1.37e-145 424
Msa0670490 AT2G22990.4 48.916 415 186 7 33 443 16 408 4.26e-145 421
Msa0670490 AT3G10450.4 50.485 412 175 7 38 444 26 413 4.14e-144 419
Msa0670490 AT3G10450.2 50.000 416 178 8 59 469 4 394 1.93e-143 416
Msa0670490 AT2G22920.1 51.478 406 166 8 30 428 14 395 5.82e-139 405
Msa0670490 AT3G12203.2 50.000 404 172 7 71 469 1 379 6.03e-135 394
Msa0670490 AT1G73310.2 49.877 405 173 7 33 432 26 405 6.11e-135 396
Msa0670490 AT1G73290.3 50.500 400 168 9 33 428 25 398 1.17e-133 392
Msa0670490 AT3G12220.2 49.029 412 180 8 59 465 15 401 1.35e-133 392
Msa0670490 AT3G10450.3 49.105 391 170 7 59 444 4 370 1.01e-131 385
Msa0670490 AT5G36180.5 49.584 361 147 8 117 469 6 339 1.36e-114 341
Msa0670490 AT5G36180.3 49.584 361 147 8 117 469 6 339 1.36e-114 341
Msa0670490 AT1G73280.4 48.045 358 157 6 117 469 6 339 3.81e-112 334
Msa0670490 AT2G22990.6 48.235 340 151 6 134 469 1 319 5.52e-111 331
Msa0670490 AT2G22990.2 48.235 340 151 6 134 469 1 319 6.64e-111 330
Msa0670490 AT2G22980.3 48.493 365 151 10 32 388 17 352 2.01e-110 330
Msa0670490 AT1G73280.2 45.845 373 173 6 21 388 13 361 4.88e-109 328
Msa0670490 AT4G12910.1 36.270 488 264 9 18 464 11 492 2.01e-108 330
Msa0670490 AT5G36180.2 48.387 341 142 7 112 444 1 315 1.25e-105 317
Msa0670490 AT2G22970.2 50.000 322 134 4 32 350 16 313 3.49e-104 313
Msa0670490 AT1G73280.3 47.633 338 148 6 137 469 1 314 5.25e-104 313
Msa0670490 AT2G22920.4 49.846 325 135 6 30 350 14 314 1.87e-101 306
Msa0670490 AT3G25420.1 35.787 489 271 13 17 465 5 490 3.22e-100 309
Msa0670490 AT2G22980.5 48.580 317 129 8 134 444 1 289 9.13e-99 298
Msa0670490 AT5G36180.4 46.914 324 138 7 112 427 1 298 8.11e-94 288
Msa0670490 AT1G73310.3 46.154 325 147 5 113 432 2 303 5.00e-93 285
Msa0670490 AT4G12910.2 35.477 451 244 9 18 427 11 455 4.27e-92 287
Msa0670490 AT2G22920.3 52.555 274 100 7 198 465 3 252 5.82e-90 275
Msa0670490 AT1G73290.2 53.906 256 106 6 33 283 25 273 3.75e-89 275
Msa0670490 AT3G12220.3 52.893 242 107 4 39 278 25 261 1.20e-80 255
Msa0670490 AT3G12220.3 54.676 139 61 2 328 465 242 379 6.81e-44 159
Msa0670490 AT4G30810.1 30.704 469 295 13 15 469 9 461 7.52e-61 206
Msa0670490 AT5G08260.1 30.707 495 285 18 10 469 4 475 2.17e-59 202
Msa0670490 AT3G52000.1 30.455 440 270 15 41 469 64 478 4.16e-59 202
Msa0670490 AT2G22960.1 61.871 139 51 2 332 469 47 184 5.06e-58 189
Msa0670490 AT3G52010.1 29.462 465 282 14 24 469 46 483 5.34e-58 199
Msa0670490 AT4G15100.1 30.942 446 281 14 41 469 45 480 1.13e-57 198
Msa0670490 AT3G52020.1 31.982 444 261 14 41 469 80 497 4.45e-57 197
Msa0670490 AT2G05850.1 29.978 447 268 16 41 469 64 483 8.42e-56 193
Msa0670490 AT5G23210.1 28.721 477 290 14 24 469 37 494 1.57e-55 192
Msa0670490 AT4G30610.1 29.638 442 287 15 40 469 32 461 3.34e-54 188
Msa0670490 AT1G61130.1 29.258 458 295 13 25 468 16 458 7.28e-54 187
Msa0670490 AT3G63470.1 29.478 441 273 16 41 469 82 496 9.12e-53 185
Msa0670490 AT3G17180.1 30.407 467 273 19 33 469 30 474 1.56e-51 181
Msa0670490 AT3G02110.1 30.110 455 282 16 35 469 32 470 1.85e-51 181
Msa0670490 AT2G35780.1 29.412 442 280 17 40 469 29 450 2.74e-51 180
Msa0670490 AT3G07990.1 29.054 444 281 15 40 469 33 456 6.75e-51 179
Msa0670490 AT1G11080.2 30.310 452 276 15 41 468 51 487 1.84e-50 179
Msa0670490 AT1G11080.1 30.310 452 276 15 41 468 51 487 2.07e-50 179
Msa0670490 AT2G35770.1 28.846 468 300 16 12 466 7 454 7.32e-49 174
Msa0670490 AT2G24010.1 30.000 440 277 17 41 469 31 450 7.82e-49 174
Msa0670490 AT1G43780.1 29.438 445 275 17 41 464 38 464 2.29e-48 173
Msa0670490 AT2G12480.3 28.051 467 294 18 19 465 8 452 3.11e-48 172
Msa0670490 AT2G33530.1 29.374 463 276 19 32 469 25 461 1.90e-47 170
Msa0670490 AT2G24000.1 28.140 430 286 12 40 457 30 448 8.09e-47 168
Msa0670490 AT1G28110.1 27.556 450 289 13 37 469 28 457 8.37e-47 168
Msa0670490 AT1G28110.2 27.556 450 289 13 37 469 28 457 8.37e-47 168
Msa0670490 AT5G23210.3 28.176 433 262 13 24 425 37 451 3.15e-45 164
Msa0670490 AT2G24010.2 28.791 455 278 18 41 469 31 465 5.65e-44 161
Msa0670490 AT2G12480.4 26.940 464 279 16 19 465 8 428 1.33e-43 159
Msa0670490 AT2G12480.1 26.998 463 278 16 19 465 8 426 8.73e-43 157
Msa0670490 AT5G42240.1 27.640 445 284 15 41 465 33 459 1.74e-42 157
Msa0670490 AT5G42230.1 28.062 449 275 17 41 464 29 454 3.41e-42 156
Msa0670490 AT5G42230.2 28.062 449 275 17 41 464 29 454 3.41e-42 156
Msa0670490 AT5G23210.5 27.273 407 250 11 94 469 8 399 4.14e-41 152
Msa0670490 AT2G12480.2 26.940 464 278 17 19 465 8 427 4.58e-41 152
Msa0670490 AT3G17180.2 30.047 426 246 19 33 428 30 433 9.55e-41 151
Msa0670490 AT5G23210.2 27.094 406 250 11 95 469 8 398 2.23e-40 150
Msa0670490 AT2G24010.3 28.033 478 269 21 41 465 2 457 8.50e-40 149
Msa0670490 AT5G22980.1 29.412 408 247 15 70 464 112 491 8.08e-39 147
Msa0670490 AT3G45010.1 25.862 406 266 10 70 464 115 496 2.52e-36 140
Msa0670490 AT3G10410.1 27.295 414 252 16 70 466 113 494 5.22e-35 137
Msa0670490 AT5G23210.4 26.243 362 222 10 95 425 8 355 4.70e-30 120
Msa0670490 AT1G15000.1 26.009 446 252 19 42 464 31 421 8.67e-26 109
Msa0670490 AT3G56540.1 36.306 157 91 4 41 195 80 229 7.74e-25 103
Msa0670490 AT2G24010.4 26.738 374 229 17 41 388 2 356 8.33e-23 99.8
Msa0670490 AT5G22960.1 34.337 166 82 4 56 220 35 174 2.43e-22 94.7
Msa0670490 AT2G24000.2 25.641 273 189 7 194 457 118 385 9.64e-20 91.7

Find 102 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGATCTGTTCCACATTT+TGG 0.131981 4_4:+13031680 Msa0670490:CDS
TCTTAAACACAACTCATTTC+TGG 0.162375 4_4:-13031338 None:intergenic
ATTCCCATTCCATGAGTAAA+TGG 0.201662 4_4:-13031138 None:intergenic
CCTCTTATGCTTTGGTTAAC+TGG 0.223979 4_4:+13028806 Msa0670490:CDS
TTTCTCTGTGTGTTGTTATA+GGG 0.242077 4_4:-13031101 None:intergenic
TTAACTCATATTGAAGCTTA+TGG 0.264666 4_4:+13028211 Msa0670490:CDS
TCTGGACTTGCCTATCAAAT+AGG 0.272453 4_4:+13028851 Msa0670490:CDS
GATACCGCTCTTTGATTTAC+AGG 0.281285 4_4:+13032222 Msa0670490:CDS
CTTAATTAATTGCAGGGTTC+AGG 0.282365 4_4:+13034980 Msa0670490:intron
TTGAAAATTACCTATTTGAT+AGG 0.283259 4_4:-13028861 None:intergenic
TTTGATAGGTACGTGGGGTT+AGG 0.283274 4_4:+13028716 Msa0670490:intron
TTGATAGGTACGTGGGGTTA+GGG 0.325028 4_4:+13028717 Msa0670490:intron
TGTCTACTCAAGCTTGGATT+AGG 0.336911 4_4:+13034094 Msa0670490:CDS
ATCTCAAGTTGGAATAAATA+TGG 0.344040 4_4:+13035085 Msa0670490:three_prime_UTR
TGGAGGCCATGGTTTGTAAA+TGG 0.346299 4_4:+13034144 Msa0670490:CDS
TGGTTTACTTGCCTCATCAT+AGG 0.352784 4_4:-13031371 None:intergenic
TCCTAAGAAATTGAAGAGTA+TGG 0.358041 4_4:-13030108 None:intergenic
TCAAAGGTTGAACAACTTCC+TGG 0.360669 4_4:+13028235 Msa0670490:CDS
ACCATACTCTTCAATTTCTT+AGG 0.361295 4_4:+13030107 Msa0670490:CDS
TACACTCCTGAGCAATGTTT+TGG 0.361913 4_4:+13035019 Msa0670490:CDS
TGATTAACAGGAAATGAAAA+AGG 0.372135 4_4:+13030894 Msa0670490:intron
GTTTACTTGGCAGTTTAGTT+CGG 0.379290 4_4:-13031790 None:intergenic
TCCTTGATTTCAAATGCAAT+TGG 0.380583 4_4:-13029708 None:intergenic
ATCTTTGACTCAGGAGTTGA+AGG 0.381454 4_4:+13031740 Msa0670490:CDS
TTTACTTGGCAGTTTAGTTC+GGG 0.382908 4_4:-13031789 None:intergenic
TCCAATTGCATTTGAAATCA+AGG 0.383040 4_4:+13029707 Msa0670490:CDS
ATTTGAAATTTCTTGAAGAA+TGG 0.384481 4_4:-13030593 None:intergenic
CGACGGGAGCGTGCCTAGTT+TGG 0.389176 4_4:+13029734 Msa0670490:CDS
GAAATTTCTTGAAGAATGGC+TGG 0.393437 4_4:-13030589 None:intergenic
CTTTCATGTCTACTCAAGCT+TGG 0.398114 4_4:+13034088 Msa0670490:CDS
TGCAGGGAACCATAGGGAAA+TGG 0.401064 4_4:+13032123 Msa0670490:intron
CAGCGATGTTCTTACCTTCA+CGG 0.403156 4_4:-13034850 None:intergenic
AGAAAGATCCTCTTATGCTT+TGG 0.405600 4_4:+13028798 Msa0670490:CDS
CTTTGGTTAACTGGTGGTCC+TGG 0.408919 4_4:+13028815 Msa0670490:CDS
GTAGATTTGCCACTTGGAAC+TGG 0.409499 4_4:+13030031 Msa0670490:CDS
TCACGGATCATCGGAGCGAC+TGG 0.415782 4_4:+13030074 Msa0670490:CDS
CCAGTTAACCAAAGCATAAG+AGG 0.430684 4_4:-13028806 None:intergenic
ACTACTCCATTGTAGATGAT+TGG 0.433138 4_4:+13034124 Msa0670490:CDS
ATCCCATTTACTCATGGAAT+GGG 0.451576 4_4:+13031135 Msa0670490:CDS
TACTTGCCTCATCATAGGAT+TGG 0.459389 4_4:-13031366 None:intergenic
GCAGGGAACCATAGGGAAAT+GGG 0.468772 4_4:+13032124 Msa0670490:intron
ATTCTTCAAGAAATTTCAAA+TGG 0.469672 4_4:+13030595 Msa0670490:CDS
TATCAAATCCCATTTACTCA+TGG 0.476162 4_4:+13031129 Msa0670490:CDS
GACCCAGTTTCAAGTTCAAA+AGG 0.476471 4_4:-13028274 None:intergenic
TCTTGAAGAATGGCTGGGAC+AGG 0.476940 4_4:-13030583 None:intergenic
CTTTCAAATGAATTCTACAT+TGG 0.479014 4_4:+13030538 Msa0670490:CDS
TTCCCATTCCATGAGTAAAT+GGG 0.481220 4_4:-13031137 None:intergenic
TGTCAGATACTACTAGCTCT+TGG 0.488028 4_4:+13028169 Msa0670490:CDS
TGAGCATTGCAGGGAACCAT+AGG 0.491603 4_4:+13032116 Msa0670490:intron
TGTGGCCTCAAGACCAAACT+AGG 0.493874 4_4:-13029747 None:intergenic
CCTTGAGATTTATCAATGGT+TGG 0.494155 4_4:-13030920 None:intergenic
AATCCCATTTACTCATGGAA+TGG 0.496948 4_4:+13031134 Msa0670490:CDS
TACTCTTCAATTTCTTAGGA+AGG 0.501252 4_4:+13030111 Msa0670490:CDS
TGAAGTGAATTATGAGAAGG+AGG 0.504769 4_4:-13028136 None:intergenic
ACAACGTTCCCATTTCCCTA+TGG 0.512118 4_4:-13032132 None:intergenic
TTGTAGATGATTGGAGGCCA+TGG 0.515469 4_4:+13034133 Msa0670490:CDS
CATATATTTGATAGGTACGT+GGG 0.520465 4_4:+13028710 Msa0670490:intron
GAAACCTTGAGATTTATCAA+TGG 0.525518 4_4:-13030924 None:intergenic
GTGGAGAAGATCTTTGACTC+AGG 0.525567 4_4:+13031731 Msa0670490:CDS
GGTAGTGGCCCTTGAAAACC+AGG 0.530817 4_4:-13028253 None:intergenic
AACATGCCAAAACATTGCTC+AGG 0.535431 4_4:-13035025 None:intergenic
CTTGAGATTCTGATTTACAA+AGG 0.544758 4_4:-13035070 None:intergenic
CCAACCATTGATAAATCTCA+AGG 0.544985 4_4:+13030920 Msa0670490:CDS
TGGTCTTGAGGCCACAGTCA+TGG 0.546927 4_4:+13029754 Msa0670490:CDS
ATTGGAGCTGATTCATACTC+AGG 0.549342 4_4:+13030556 Msa0670490:CDS
CTTATGCTTTGGTTAACTGG+TGG 0.549628 4_4:+13028809 Msa0670490:CDS
TTGTAAATGGTCAAGTGGGA+GGG 0.549632 4_4:+13034157 Msa0670490:CDS
GCGTGCCTAGTTTGGTCTTG+AGG 0.549911 4_4:+13029742 Msa0670490:CDS
TGTAAATCAGAATCTCAAGT+TGG 0.550391 4_4:+13035074 Msa0670490:exon
TATTGAAGCTTATGGCTCAA+AGG 0.556674 4_4:+13028219 Msa0670490:CDS
GTTTCAAGTTCAAAAGGTAG+TGG 0.558447 4_4:-13028268 None:intergenic
GAGCATTGCAGGGAACCATA+GGG 0.560239 4_4:+13032117 Msa0670490:intron
TTGAAATCAAGGAGTACGAC+GGG 0.564117 4_4:+13029718 Msa0670490:CDS
ACTCCATTGTAGATGATTGG+AGG 0.565180 4_4:+13034127 Msa0670490:CDS
CACAAAAGCGATCCAAAATG+TGG 0.571488 4_4:-13031692 None:intergenic
TAGTGAAGTGAATTATGAGA+AGG 0.571718 4_4:-13028139 None:intergenic
ACTTGACCATTTACAAACCA+TGG 0.575649 4_4:-13034150 None:intergenic
AAATTTCTTGAAGAATGGCT+GGG 0.584151 4_4:-13030588 None:intergenic
TGATAGGTACGTGGGGTTAG+GGG 0.585717 4_4:+13028718 Msa0670490:intron
TAACGATGAGCGTGTTCGCA+AGG 0.587514 4_4:+13031922 Msa0670490:CDS
CATTGCTCAGGAGTGTACTC+AGG 0.590734 4_4:-13035013 None:intergenic
CAAGGCACTGCATATTCGAG+AGG 0.592389 4_4:+13031940 Msa0670490:CDS
ATGGTTTGTAAATGGTCAAG+TGG 0.593420 4_4:+13034152 Msa0670490:CDS
TTTGTAAATGGTCAAGTGGG+AGG 0.596202 4_4:+13034156 Msa0670490:CDS
CAAGCTTGAGTAGACATGAA+AGG 0.607068 4_4:-13034087 None:intergenic
TCCTTTCATGCAGATACACA+AGG 0.615114 4_4:+13034799 Msa0670490:intron
TCATATATTTGATAGGTACG+TGG 0.623494 4_4:+13028709 Msa0670490:intron
TGGCCTCCAATCATCTACAA+TGG 0.626622 4_4:-13034130 None:intergenic
TGGTTTGTAAATGGTCAAGT+GGG 0.635753 4_4:+13034153 Msa0670490:CDS
AAAGATCTTCTCCACAGACG+TGG 0.637482 4_4:-13031723 None:intergenic
AGATCTCCAATCCTATGATG+AGG 0.641211 4_4:+13031360 Msa0670490:CDS
GTGACGATGATCCACGTCTG+TGG 0.642963 4_4:+13031712 Msa0670490:CDS
AGCATAAGAGGATCTTTCTG+AGG 0.643360 4_4:-13028794 None:intergenic
CATGAAACTCAAAGCTACCA+AGG 0.648314 4_4:-13032181 None:intergenic
AACACCTTTGTCCATGACTG+TGG 0.650204 4_4:-13029765 None:intergenic
TTCACCTGTAAATCAAAGAG+CGG 0.660021 4_4:-13032226 None:intergenic
GAGGCCACAGTCATGGACAA+AGG 0.660835 4_4:+13029761 Msa0670490:CDS
GCTTGCAAAGATGAACATGA+TGG 0.680214 4_4:+13028111 Msa0670490:exon
CATTTCTGATGAACTCTACG+CGG 0.688710 4_4:+13031161 Msa0670490:CDS
TATGAGAAACCAGTTCCAAG+TGG 0.692436 4_4:-13030040 None:intergenic
ATATATTTGATAGGTACGTG+GGG 0.700917 4_4:+13028711 Msa0670490:intron
TTTGAAATCAAGGAGTACGA+CGG 0.702574 4_4:+13029717 Msa0670490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCTTTTCTATTTT+AGG + chr4_4:13028337-13028356 Msa0670490:intron 10.0%
!! TTATAATTATAATTACAATG+AGG + chr4_4:13030680-13030699 Msa0670490:intron 10.0%
!! TATTTATTATGTTATAAGTA+TGG - chr4_4:13032935-13032954 None:intergenic 10.0%
!! ATCAAATTTAAATATGTAAA+TGG + chr4_4:13034185-13034204 Msa0670490:intron 10.0%
!! AAATATTTAATTGTCTATAA+AGG + chr4_4:13034927-13034946 Msa0670490:intron 10.0%
!! AATATTTAATTGTCTATAAA+GGG + chr4_4:13034928-13034947 Msa0670490:intron 10.0%
!! AAATCAATGTTGAATTATTT+AGG - chr4_4:13029798-13029817 None:intergenic 15.0%
!! ATATAAATCATAGTTCTTAT+TGG - chr4_4:13029846-13029865 None:intergenic 15.0%
!!! TATTTTCATGATTTCATTAT+TGG + chr4_4:13029948-13029967 Msa0670490:intron 15.0%
!! AATATTAAACAAAGAGAAAT+AGG - chr4_4:13030411-13030430 None:intergenic 15.0%
!!! CTTTGTTTAATATTTACTTT+AGG + chr4_4:13030417-13030436 Msa0670490:intron 15.0%
!!! TATTTAGATTTTTTGTTCAT+CGG - chr4_4:13030981-13031000 None:intergenic 15.0%
!! ATGAACAAAAAATCTAAATA+GGG + chr4_4:13030981-13031000 Msa0670490:intron 15.0%
!! ATCTTAATAATAGGTATAAT+TGG - chr4_4:13031399-13031418 None:intergenic 15.0%
!! TTTAGTATCATCTTAATAAT+AGG - chr4_4:13031408-13031427 None:intergenic 15.0%
!! TAGAACAAAGAAAATAATAA+GGG + chr4_4:13031536-13031555 Msa0670490:intron 15.0%
!! GAAATAATAGTTTAACAATA+TGG - chr4_4:13031636-13031655 None:intergenic 15.0%
!!! GTTCAAAGTTTTTTTTTTTT+TGG + chr4_4:13032965-13032984 Msa0670490:intron 15.0%
!!! AAAGTTTTTTTTTTTTTGGA+AGG + chr4_4:13032969-13032988 Msa0670490:intron 15.0%
!!! GAAATTTTAGAGAAAAAATT+GGG - chr4_4:13033026-13033045 None:intergenic 15.0%
!!! TGAAATTTTAGAGAAAAAAT+TGG - chr4_4:13033027-13033046 None:intergenic 15.0%
!!! ATTTTGTTGTGTTATTTTTT+GGG - chr4_4:13033314-13033333 None:intergenic 15.0%
!!! AAAGACATTTTACAATTTTT+GGG - chr4_4:13034258-13034277 None:intergenic 15.0%
!! AAATTATAGAAAAATAGGAT+TGG - chr4_4:13034710-13034729 None:intergenic 15.0%
!! TTGAAAATTACCTATTTGAT+AGG - chr4_4:13028864-13028883 None:intergenic 20.0%
!!! ACAGTTTGTTAATACATAAT+TGG + chr4_4:13028918-13028937 Msa0670490:intron 20.0%
!!! CTATTTGAAACTATCTAAAA+AGG - chr4_4:13029070-13029089 None:intergenic 20.0%
!!! ACCATAATGTATATCTATTT+TGG + chr4_4:13029295-13029314 Msa0670490:intron 20.0%
!! TCCAAAATAGATATACATTA+TGG - chr4_4:13029299-13029318 None:intergenic 20.0%
!! ATCATCAATTGAATGTTAAT+AGG + chr4_4:13029684-13029703 Msa0670490:intron 20.0%
!!! TAGTAATGTTAATGATCTTT+TGG + chr4_4:13029986-13030005 Msa0670490:intron 20.0%
!!! ATTTGAAATTTCTTGAAGAA+TGG - chr4_4:13030596-13030615 None:intergenic 20.0%
!! ATTCTTCAAGAAATTTCAAA+TGG + chr4_4:13030595-13030614 Msa0670490:CDS 20.0%
!! TAATCAATTTATTAGAGTGA+GGG - chr4_4:13030737-13030756 None:intergenic 20.0%
!! ATAATCAATTTATTAGAGTG+AGG - chr4_4:13030738-13030757 None:intergenic 20.0%
!! GATGAACAAAAAATCTAAAT+AGG + chr4_4:13030980-13030999 Msa0670490:intron 20.0%
!! AATAATAGGTATAATTGGAA+TGG - chr4_4:13031394-13031413 None:intergenic 20.0%
!!! TTAAGATGATACTAAAGTTT+TGG + chr4_4:13031412-13031431 Msa0670490:intron 20.0%
!! GTAGAACAAAGAAAATAATA+AGG + chr4_4:13031535-13031554 Msa0670490:intron 20.0%
!! TAAGTTATGAAAAGTTTACT+TGG - chr4_4:13031806-13031825 None:intergenic 20.0%
!!! ATCACATTTGAAACATTTTA+TGG - chr4_4:13031844-13031863 None:intergenic 20.0%
!! CATGTAAATTTAAGCAAAAA+AGG + chr4_4:13032200-13032219 Msa0670490:CDS 20.0%
!! TGAAAAATACCTCATAAAAA+CGG - chr4_4:13032389-13032408 None:intergenic 20.0%
!!! TCATATCTTATTTAAGTTCA+AGG - chr4_4:13033114-13033133 None:intergenic 20.0%
!!! GATTTTGTTGTGTTATTTTT+TGG - chr4_4:13033315-13033334 None:intergenic 20.0%
!! ACTGTTAATAAGAAAATCAA+TGG + chr4_4:13033840-13033859 Msa0670490:intron 20.0%
!!! TGTCTAATTCTAAAAAATGA+AGG - chr4_4:13034229-13034248 None:intergenic 20.0%
!!! GAAAGACATTTTACAATTTT+TGG - chr4_4:13034259-13034278 None:intergenic 20.0%
!! AGACTAATTATTGGAAAATT+TGG + chr4_4:13034433-13034452 Msa0670490:intron 20.0%
!! TTTAAGAATAACACTCAATT+TGG + chr4_4:13034902-13034921 Msa0670490:intron 20.0%
!!! ATTTTTGCTTAATTAATTGC+AGG + chr4_4:13034973-13034992 Msa0670490:intron 20.0%
!!! TTTTTGCTTAATTAATTGCA+GGG + chr4_4:13034974-13034993 Msa0670490:intron 20.0%
!!! TGAGTTGAACATAATTTTTG+AGG - chr4_4:13028048-13028067 None:intergenic 25.0%
! TTAACTCATATTGAAGCTTA+TGG + chr4_4:13028211-13028230 Msa0670490:CDS 25.0%
! ATTTGTAACAGAAAATGGAA+TGG - chr4_4:13028311-13028330 None:intergenic 25.0%
! AGTGAATTTGTAACAGAAAA+TGG - chr4_4:13028316-13028335 None:intergenic 25.0%
! TGTGTGTTCATATATTTGAT+AGG + chr4_4:13028702-13028721 Msa0670490:intron 25.0%
! TAGTTTCAAATAGTGTACTA+AGG + chr4_4:13029077-13029096 Msa0670490:intron 25.0%
! GATACAAAATCTATACTAAC+TGG - chr4_4:13029222-13029241 None:intergenic 25.0%
!!! GTTCGTATTGATTAGAAAAT+TGG - chr4_4:13029277-13029296 None:intergenic 25.0%
!!! TCCATCACTTTTCTTTTATT+AGG + chr4_4:13029452-13029471 Msa0670490:intron 25.0%
! ACCTAATAAAAGAAAAGTGA+TGG - chr4_4:13029456-13029475 None:intergenic 25.0%
! TTCATGATTTCATTATTGGA+AGG + chr4_4:13029952-13029971 Msa0670490:intron 25.0%
! AAGATCATTAACATTACTAC+CGG - chr4_4:13029985-13030004 None:intergenic 25.0%
! TAAGTTCATTATGCTAACTA+GGG + chr4_4:13030134-13030153 Msa0670490:intron 25.0%
!! GTTAATTTTTCTCATGATGA+AGG + chr4_4:13030319-13030338 Msa0670490:intron 25.0%
! CAATTATCTGTATTGTATAG+TGG + chr4_4:13030494-13030513 Msa0670490:intron 25.0%
! CTTTCAAATGAATTCTACAT+TGG + chr4_4:13030538-13030557 Msa0670490:CDS 25.0%
!!! TCTGAAATATTGAGCATTTT+AGG - chr4_4:13030629-13030648 None:intergenic 25.0%
! AAAATGCTCAATATTTCAGA+TGG + chr4_4:13030629-13030648 Msa0670490:intron 25.0%
! AATCAATTTATTAGAGTGAG+GGG - chr4_4:13030736-13030755 None:intergenic 25.0%
!!! TAGTATAAACTGACTTGATT+CGG + chr4_4:13030799-13030818 Msa0670490:intron 25.0%
! TTTCCATTTCTTTGATTAAC+AGG + chr4_4:13030882-13030901 Msa0670490:intron 25.0%
! TTTCCTGTTAATCAAAGAAA+TGG - chr4_4:13030888-13030907 None:intergenic 25.0%
! TGATTAACAGGAAATGAAAA+AGG + chr4_4:13030894-13030913 Msa0670490:intron 25.0%
! AGCTTTACTGAAGAATAATA+AGG - chr4_4:13031196-13031215 None:intergenic 25.0%
! ATAAAATCCTCATATCAAAC+TGG + chr4_4:13031980-13031999 Msa0670490:intron 25.0%
! AGAAAAACACTACATACATA+TGG - chr4_4:13032301-13032320 None:intergenic 25.0%
!! TATGTATGTAGTGTTTTTCT+TGG + chr4_4:13032301-13032320 Msa0670490:intron 25.0%
!!! TTATGAGGTATTTTTCACTT+TGG + chr4_4:13032392-13032411 Msa0670490:intron 25.0%
!!! TATGAGGTATTTTTCACTTT+GGG + chr4_4:13032393-13032412 Msa0670490:intron 25.0%
!!! GTTTACAAGGTTCTAAATAA+CGG + chr4_4:13032739-13032758 Msa0670490:intron 25.0%
! ACCTAAATACTCAAATTAAG+TGG + chr4_4:13033060-13033079 Msa0670490:intron 25.0%
!! ACCACTTAATTTGAGTATTT+AGG - chr4_4:13033064-13033083 None:intergenic 25.0%
! AAATCAATTGTTGATGTTAC+CGG - chr4_4:13033905-13033924 None:intergenic 25.0%
! AACAGAAGAAGTTAACAAAA+AGG - chr4_4:13034289-13034308 None:intergenic 25.0%
! TAATGAACTGAAATTGATGT+GGG - chr4_4:13034347-13034366 None:intergenic 25.0%
! ACATCAATTTCAGTTCATTA+GGG + chr4_4:13034347-13034366 Msa0670490:intron 25.0%
!! ACTAATTTTCCAAGGAAATT+TGG + chr4_4:13034370-13034389 Msa0670490:intron 25.0%
!! CTAATTTTCCAAGGAAATTT+GGG + chr4_4:13034371-13034390 Msa0670490:intron 25.0%
! AATTGTGCAAGACTAATTAT+TGG + chr4_4:13034424-13034443 Msa0670490:intron 25.0%
!! TATGAAATTTAGGGTTCTTA+GGG - chr4_4:13034459-13034478 None:intergenic 25.0%
! TTGATTTAGATTAGGATACA+AGG - chr4_4:13034774-13034793 None:intergenic 25.0%
!!! GGAAATTGTTGATTTAGATT+AGG - chr4_4:13034782-13034801 None:intergenic 25.0%
!!! ATCTCAAGTTGGAATAAATA+TGG + chr4_4:13035085-13035104 Msa0670490:three_prime_UTR 25.0%
TAGTGAAGTGAATTATGAGA+AGG - chr4_4:13028142-13028161 None:intergenic 30.0%
! TACCTTTTGAACTTGAAACT+GGG + chr4_4:13028272-13028291 Msa0670490:CDS 30.0%
!! GACTAAAAAGTGTTTCATGT+AGG + chr4_4:13028545-13028564 Msa0670490:intron 30.0%
AACAAATGATTGAGTTCAAG+CGG - chr4_4:13028620-13028639 None:intergenic 30.0%
TCATATATTTGATAGGTACG+TGG + chr4_4:13028709-13028728 Msa0670490:intron 30.0%
CATATATTTGATAGGTACGT+GGG + chr4_4:13028710-13028729 Msa0670490:intron 30.0%
ATATATTTGATAGGTACGTG+GGG + chr4_4:13028711-13028730 Msa0670490:intron 30.0%
! ATTCATTTTGCAGTGAAATG+TGG + chr4_4:13029248-13029267 Msa0670490:intron 30.0%
! TTCATTTTGCAGTGAAATGT+GGG + chr4_4:13029249-13029268 Msa0670490:intron 30.0%
GGGATACAACATAATAAATC+AGG - chr4_4:13029341-13029360 None:intergenic 30.0%
! GAATGAGAAGAACTATTTTG+TGG - chr4_4:13029541-13029560 None:intergenic 30.0%
ACAAGAAAATAGCCAAATCA+TGG - chr4_4:13029588-13029607 None:intergenic 30.0%
!! TTTGGCTATTTTCTTGTGTT+TGG + chr4_4:13029591-13029610 Msa0670490:intron 30.0%
! TCCAATTGCATTTGAAATCA+AGG + chr4_4:13029707-13029726 Msa0670490:CDS 30.0%
TCCTTGATTTCAAATGCAAT+TGG - chr4_4:13029711-13029730 None:intergenic 30.0%
ATTATTGGAAGGTGATTTAC+CGG + chr4_4:13029963-13029982 Msa0670490:intron 30.0%
! ATTTTTGTAGATTTGCCACT+TGG + chr4_4:13030025-13030044 Msa0670490:CDS 30.0%
CTCATATGCAAAAAATGTCA+CGG + chr4_4:13030057-13030076 Msa0670490:CDS 30.0%
ACCATACTCTTCAATTTCTT+AGG + chr4_4:13030107-13030126 Msa0670490:CDS 30.0%
TCCTAAGAAATTGAAGAGTA+TGG - chr4_4:13030111-13030130 None:intergenic 30.0%
TACTCTTCAATTTCTTAGGA+AGG + chr4_4:13030111-13030130 Msa0670490:CDS 30.0%
GTAAGTTCATTATGCTAACT+AGG + chr4_4:13030133-13030152 Msa0670490:intron 30.0%
AAAGAAAAAGTCTGAAGATG+TGG - chr4_4:13030196-13030215 None:intergenic 30.0%
TCGTAAATGAAGATCATAGT+CGG - chr4_4:13030345-13030364 None:intergenic 30.0%
TGATCTTCATTTACGAAAAC+TGG + chr4_4:13030349-13030368 Msa0670490:intron 30.0%
!! TCGAATTTTGAGTCATAGTT+AGG - chr4_4:13030453-13030472 None:intergenic 30.0%
AAATTTCTTGAAGAATGGCT+GGG - chr4_4:13030591-13030610 None:intergenic 30.0%
ATCAATTTATTAGAGTGAGG+GGG - chr4_4:13030735-13030754 None:intergenic 30.0%
TGATTATTTGCATTCTCCTA+TGG + chr4_4:13030751-13030770 Msa0670490:intron 30.0%
GAAACCTTGAGATTTATCAA+TGG - chr4_4:13030927-13030946 None:intergenic 30.0%
AATGCATATAACAAGATCGA+TGG - chr4_4:13031033-13031052 None:intergenic 30.0%
!! GAAAATATTGAGACTGGTTT+AGG - chr4_4:13031062-13031081 None:intergenic 30.0%
! AAACCAGTCTCAATATTTTC+AGG + chr4_4:13031062-13031081 Msa0670490:intron 30.0%
! AACCAGTCTCAATATTTTCA+GGG + chr4_4:13031063-13031082 Msa0670490:intron 30.0%
! TTTCTCTGTGTGTTGTTATA+GGG - chr4_4:13031104-13031123 None:intergenic 30.0%
!! TTTTCTCTGTGTGTTGTTAT+AGG - chr4_4:13031105-13031124 None:intergenic 30.0%
TATCAAATCCCATTTACTCA+TGG + chr4_4:13031129-13031148 Msa0670490:CDS 30.0%
!! TGATGATGTGTTTTACTTGA+TGG + chr4_4:13031248-13031267 Msa0670490:intron 30.0%
TCTTAAACACAACTCATTTC+TGG - chr4_4:13031341-13031360 None:intergenic 30.0%
!! ATGATACTAAAGTTTTGGTG+TGG + chr4_4:13031417-13031436 Msa0670490:intron 30.0%
! TTTTTACCTCAGCACAAAAT+GGG + chr4_4:13031898-13031917 Msa0670490:CDS 30.0%
AAAGAAGTCTCAACAACTAA+TGG + chr4_4:13032063-13032082 Msa0670490:intron 30.0%
!!! AGTTTTGTTCTTAGTTGAAC+AGG + chr4_4:13032690-13032709 Msa0670490:intron 30.0%
!! GTTTTGTTCTTAGTTGAACA+GGG + chr4_4:13032691-13032710 Msa0670490:intron 30.0%
!!! TGTTATTTTTTGGGTGGATA+AGG - chr4_4:13033305-13033324 None:intergenic 30.0%
!!! TTGTTGTGTTATTTTTTGGG+TGG - chr4_4:13033311-13033330 None:intergenic 30.0%
! ATCTTTTGTGATCCTATTTG+AGG - chr4_4:13033439-13033458 None:intergenic 30.0%
AGAAATTAGAACAAGAGAAG+AGG - chr4_4:13033533-13033552 None:intergenic 30.0%
! TTTTTGTTCTTGACGTGAAA+AGG + chr4_4:13033641-13033660 Msa0670490:intron 30.0%
! TGCATGTTAAAAGTTCTGAT+AGG - chr4_4:13033780-13033799 None:intergenic 30.0%
!! ATGTAGAACTTTAGAACAGA+AGG + chr4_4:13033800-13033819 Msa0670490:intron 30.0%
TTAAATTACTATGCATGTCC+CGG + chr4_4:13033883-13033902 Msa0670490:intron 30.0%
AATCAATTGTTGATGTTACC+GGG - chr4_4:13033904-13033923 None:intergenic 30.0%
! TAGCTTTCTTGATGACATTA+AGG + chr4_4:13034003-13034022 Msa0670490:intron 30.0%
TATGACAATTGATGAGTTGT+TGG + chr4_4:13034039-13034058 Msa0670490:intron 30.0%
!!! AAATGAAGGACTATTTTGAC+TGG - chr4_4:13034215-13034234 None:intergenic 30.0%
TTGTTAACTTCTTCTGTTAG+AGG + chr4_4:13034291-13034310 Msa0670490:intron 30.0%
CTAATGAACTGAAATTGATG+TGG - chr4_4:13034348-13034367 None:intergenic 30.0%
CACATCAATTTCAGTTCATT+AGG + chr4_4:13034346-13034365 Msa0670490:intron 30.0%
! CTATGAAATTTAGGGTTCTT+AGG - chr4_4:13034460-13034479 None:intergenic 30.0%
CTAAGAACCCTAAATTTCAT+AGG + chr4_4:13034458-13034477 Msa0670490:intron 30.0%
TACTTCGCCTATGAAATTTA+GGG - chr4_4:13034468-13034487 None:intergenic 30.0%
! AAGGTGTCTTATTATGTTCT+AGG - chr4_4:13034755-13034774 None:intergenic 30.0%
CTTGAGATTCTGATTTACAA+AGG - chr4_4:13035073-13035092 None:intergenic 30.0%
TGTAAATCAGAATCTCAAGT+TGG + chr4_4:13035074-13035093 Msa0670490:exon 30.0%
! GTCCATATTTTATGTCCTAA+CGG + chr4_4:13035159-13035178 Msa0670490:intron 30.0%
! TCCATATTTTATGTCCTAAC+GGG + chr4_4:13035160-13035179 Msa0670490:intron 30.0%
TGAAGTGAATTATGAGAAGG+AGG - chr4_4:13028139-13028158 None:intergenic 35.0%
TATTGAAGCTTATGGCTCAA+AGG + chr4_4:13028219-13028238 Msa0670490:CDS 35.0%
!! AACAACTTCCTGGTTTTCAA+GGG + chr4_4:13028245-13028264 Msa0670490:CDS 35.0%
!! GTTTCAAGTTCAAAAGGTAG+TGG - chr4_4:13028271-13028290 None:intergenic 35.0%
! CTACCTTTTGAACTTGAAAC+TGG + chr4_4:13028271-13028290 Msa0670490:CDS 35.0%
ATAAAGAATGACACTCCTCA+AGG + chr4_4:13028412-13028431 Msa0670490:intron 35.0%
TCTTGCTAAACTAAACCTTG+AGG - chr4_4:13028430-13028449 None:intergenic 35.0%
CATAGTAATGCATAGTTCGT+CGG + chr4_4:13028507-13028526 Msa0670490:intron 35.0%
GTTTCATGTAGGATTCAACT+CGG + chr4_4:13028556-13028575 Msa0670490:intron 35.0%
TTTCATGTAGGATTCAACTC+GGG + chr4_4:13028557-13028576 Msa0670490:intron 35.0%
AGAAAGATCCTCTTATGCTT+TGG + chr4_4:13028798-13028817 Msa0670490:CDS 35.0%
CAGATGTTCAATTGTAGATG+TGG + chr4_4:13029132-13029151 Msa0670490:intron 35.0%
TCGAGATCATCATAGTCAAT+CGG - chr4_4:13029362-13029381 None:intergenic 35.0%
CTACCTAACCTTAGTTTAGT+CGG + chr4_4:13029399-13029418 Msa0670490:intron 35.0%
AAAAGTGACCGACTAAACTA+AGG - chr4_4:13029410-13029429 None:intergenic 35.0%
TCGATGTGATAACCATGATT+TGG + chr4_4:13029573-13029592 Msa0670490:intron 35.0%
TTGAGTGGATCAATTTCAGT+AGG - chr4_4:13029640-13029659 None:intergenic 35.0%
ACTCTATGAATGTTGTTGAG+TGG - chr4_4:13029655-13029674 None:intergenic 35.0%
! TTTGAAATCAAGGAGTACGA+CGG + chr4_4:13029717-13029736 Msa0670490:CDS 35.0%
CAAAAAATGTCACGGATCAT+CGG + chr4_4:13030065-13030084 Msa0670490:CDS 35.0%
! AACTATTCTCCATTTTCTCC+TGG - chr4_4:13030279-13030298 None:intergenic 35.0%
CGTGACAAGAAATATGACAA+CGG - chr4_4:13030384-13030403 None:intergenic 35.0%
GAAATTTCTTGAAGAATGGC+TGG - chr4_4:13030592-13030611 None:intergenic 35.0%
TTTGCTTTGCTTATTGCCAT+AGG - chr4_4:13030770-13030789 None:intergenic 35.0%
!!! TCTTTACGCTCTGGTTTTTA+GGG - chr4_4:13030843-13030862 None:intergenic 35.0%
CCTTGAGATTTATCAATGGT+TGG - chr4_4:13030923-13030942 None:intergenic 35.0%
CCAACCATTGATAAATCTCA+AGG + chr4_4:13030920-13030939 Msa0670490:CDS 35.0%
!!! CGATGGAACAAAGGTATTTT+GGG - chr4_4:13031016-13031035 None:intergenic 35.0%
!!! TCGATGGAACAAAGGTATTT+TGG - chr4_4:13031017-13031036 None:intergenic 35.0%
TAACAAGATCGATGGAACAA+AGG - chr4_4:13031025-13031044 None:intergenic 35.0%
ATCCCTGAAAATATTGAGAC+TGG - chr4_4:13031068-13031087 None:intergenic 35.0%
!! TATTTTCAGGGATATCTGCT+AGG + chr4_4:13031075-13031094 Msa0670490:intron 35.0%
!! ATTTTCAGGGATATCTGCTA+GGG + chr4_4:13031076-13031095 Msa0670490:intron 35.0%
AATCCCATTTACTCATGGAA+TGG + chr4_4:13031134-13031153 Msa0670490:CDS 35.0%
ATCCCATTTACTCATGGAAT+GGG + chr4_4:13031135-13031154 Msa0670490:CDS 35.0%
TTCCCATTCCATGAGTAAAT+GGG - chr4_4:13031140-13031159 None:intergenic 35.0%
ATTCCCATTCCATGAGTAAA+TGG - chr4_4:13031141-13031160 None:intergenic 35.0%
CATACATTGTACTTTCCTGT+TGG + chr4_4:13031219-13031238 Msa0670490:intron 35.0%
ACATCATCATTGTAACCAAC+AGG - chr4_4:13031237-13031256 None:intergenic 35.0%
GATGGTCTACTGTTATCTAT+TGG + chr4_4:13031266-13031285 Msa0670490:intron 35.0%
!! AAAGTTTTGGTGTGGTCTTT+AGG + chr4_4:13031425-13031444 Msa0670490:intron 35.0%
CAACAGTAGCTACTTAATCA+TGG + chr4_4:13031462-13031481 Msa0670490:intron 35.0%
AAATGAGAGACTGGTAAAGA+TGG + chr4_4:13031564-13031583 Msa0670490:intron 35.0%
! ACTTGATCTGTTCCACATTT+TGG + chr4_4:13031680-13031699 Msa0670490:CDS 35.0%
! TTTACTTGGCAGTTTAGTTC+GGG - chr4_4:13031792-13031811 None:intergenic 35.0%
GTTTACTTGGCAGTTTAGTT+CGG - chr4_4:13031793-13031812 None:intergenic 35.0%
! GTTTTTACCTCAGCACAAAA+TGG + chr4_4:13031897-13031916 Msa0670490:CDS 35.0%
TCTGTTTCCAGTTTGATATG+AGG - chr4_4:13031990-13032009 None:intergenic 35.0%
!!! TACATAGTTTTGAGCATTGC+AGG + chr4_4:13032106-13032125 Msa0670490:intron 35.0%
!!! ACATAGTTTTGAGCATTGCA+GGG + chr4_4:13032107-13032126 Msa0670490:intron 35.0%
!! GATTTTGAGAATGAGATCCT+TGG + chr4_4:13032164-13032183 Msa0670490:CDS 35.0%
TTCACCTGTAAATCAAAGAG+CGG - chr4_4:13032229-13032248 None:intergenic 35.0%
!! GAGCGTTTTTCTTTAGAAGT+TGG + chr4_4:13032342-13032361 Msa0670490:intron 35.0%
!! TCTATTGCACCGTTTTTATG+AGG + chr4_4:13032377-13032396 Msa0670490:intron 35.0%
TGAAGCAATGTTAGACTTCT+TGG + chr4_4:13032505-13032524 Msa0670490:intron 35.0%
CGGTCAAAACTTCAGAAAAA+TGG - chr4_4:13032645-13032664 None:intergenic 35.0%
GACTTACACAAGAACTAAAG+CGG - chr4_4:13032665-13032684 None:intergenic 35.0%
CAAATAAACCGTGTGTGTAT+TGG + chr4_4:13033254-13033273 Msa0670490:intron 35.0%
!!! TTTTTGGGTGGATAAGGATA+AGG - chr4_4:13033299-13033318 None:intergenic 35.0%
! CTATTGTGTTATTCTGCTTG+AGG - chr4_4:13033390-13033409 None:intergenic 35.0%
TGAAATCGCAAACCTCAAAT+AGG + chr4_4:13033424-13033443 Msa0670490:intron 35.0%
ACAAGAACAGAAGAAGAAGA+AGG - chr4_4:13033474-13033493 None:intergenic 35.0%
!!! CTGACTTTTCAAGTCTGTAA+TGG + chr4_4:13033551-13033570 Msa0670490:intron 35.0%
AAAAGGTCCAAAAACGATCA+TGG + chr4_4:13033658-13033677 Msa0670490:intron 35.0%
ACACCCAAGGTTTCAAAAAA+CGG - chr4_4:13033729-13033748 None:intergenic 35.0%
CATTGCTTTATAAACACCCA+AGG - chr4_4:13033742-13033761 None:intergenic 35.0%
ACTACTCCATTGTAGATGAT+TGG + chr4_4:13034124-13034143 Msa0670490:CDS 35.0%
ACTTGACCATTTACAAACCA+TGG - chr4_4:13034153-13034172 None:intergenic 35.0%
! ATGGTTTGTAAATGGTCAAG+TGG + chr4_4:13034152-13034171 Msa0670490:CDS 35.0%
! TGGTTTGTAAATGGTCAAGT+GGG + chr4_4:13034153-13034172 Msa0670490:CDS 35.0%
! CATTAGGGACTAATTTTCCA+AGG + chr4_4:13034362-13034381 Msa0670490:intron 35.0%
TATGATGACCCAAATTTCCT+TGG - chr4_4:13034382-13034401 None:intergenic 35.0%
CTACTTCGCCTATGAAATTT+AGG - chr4_4:13034469-13034488 None:intergenic 35.0%
ATGATGTGTAATCAACGTGA+AGG + chr4_4:13034506-13034525 Msa0670490:intron 35.0%
TGATGTGTAATCAACGTGAA+GGG + chr4_4:13034507-13034526 Msa0670490:intron 35.0%
! AGTCTATGATTTTTGCGAAC+TGG - chr4_4:13034633-13034652 None:intergenic 35.0%
CTTAATTAATTGCAGGGTTC+AGG + chr4_4:13034980-13034999 Msa0670490:intron 35.0%
!!! AATGTTTTGGCATGTTCACT+AGG + chr4_4:13035032-13035051 Msa0670490:CDS 35.0%
! CCATATTTTATGTCCTAACG+GGG + chr4_4:13035161-13035180 Msa0670490:intron 35.0%
! CATATTTTATGTCCTAACGG+GGG + chr4_4:13035162-13035181 Msa0670490:intron 35.0%
GCTTGCAAAGATGAACATGA+TGG + chr4_4:13028111-13028130 Msa0670490:exon 40.0%
! TGTCAGATACTACTAGCTCT+TGG + chr4_4:13028169-13028188 Msa0670490:CDS 40.0%
TCAAAGGTTGAACAACTTCC+TGG + chr4_4:13028235-13028254 Msa0670490:CDS 40.0%
!! GAACAACTTCCTGGTTTTCA+AGG + chr4_4:13028244-13028263 Msa0670490:CDS 40.0%
!! GACCCAGTTTCAAGTTCAAA+AGG - chr4_4:13028277-13028296 None:intergenic 40.0%
AGCATAAGAGGATCTTTCTG+AGG - chr4_4:13028797-13028816 None:intergenic 40.0%
CCAGTTAACCAAAGCATAAG+AGG - chr4_4:13028809-13028828 None:intergenic 40.0%
CCTCTTATGCTTTGGTTAAC+TGG + chr4_4:13028806-13028825 Msa0670490:CDS 40.0%
CTTATGCTTTGGTTAACTGG+TGG + chr4_4:13028809-13028828 Msa0670490:CDS 40.0%
TCTGGACTTGCCTATCAAAT+AGG + chr4_4:13028851-13028870 Msa0670490:CDS 40.0%
ATTGTAGATGTGGCTGCATT+TGG + chr4_4:13029142-13029161 Msa0670490:intron 40.0%
CGAGATCATCATAGTCAATC+GGG - chr4_4:13029361-13029380 None:intergenic 40.0%
TGACCGACTAAACTAAGGTT+AGG - chr4_4:13029405-13029424 None:intergenic 40.0%
! TTGAAATCAAGGAGTACGAC+GGG + chr4_4:13029718-13029737 Msa0670490:CDS 40.0%
TATGAGAAACCAGTTCCAAG+TGG - chr4_4:13030043-13030062 None:intergenic 40.0%
ATGTCTTGTGCATAGAGTTG+CGG - chr4_4:13030245-13030264 None:intergenic 40.0%
! ATTGGAGCTGATTCATACTC+AGG + chr4_4:13030556-13030575 Msa0670490:CDS 40.0%
!!! CTTTACGCTCTGGTTTTTAG+GGG - chr4_4:13030842-13030861 None:intergenic 40.0%
!!! GTCTTTACGCTCTGGTTTTT+AGG - chr4_4:13030844-13030863 None:intergenic 40.0%
CATTTCTGATGAACTCTACG+CGG + chr4_4:13031161-13031180 Msa0670490:CDS 40.0%
AGATCTCCAATCCTATGATG+AGG + chr4_4:13031360-13031379 Msa0670490:CDS 40.0%
TACTTGCCTCATCATAGGAT+TGG - chr4_4:13031369-13031388 None:intergenic 40.0%
TGGTTTACTTGCCTCATCAT+AGG - chr4_4:13031374-13031393 None:intergenic 40.0%
TCTTATCATCAGTGCCTTTC+AGG + chr4_4:13031657-13031676 Msa0670490:intron 40.0%
CACAAAAGCGATCCAAAATG+TGG - chr4_4:13031695-13031714 None:intergenic 40.0%
ATCTTTGACTCAGGAGTTGA+AGG + chr4_4:13031740-13031759 Msa0670490:CDS 40.0%
CATGAAACTCAAAGCTACCA+AGG - chr4_4:13032184-13032203 None:intergenic 40.0%
! GATACCGCTCTTTGATTTAC+AGG + chr4_4:13032222-13032241 Msa0670490:CDS 40.0%
! TTAGAAGTTGGTCAGAACTC+AGG + chr4_4:13032354-13032373 Msa0670490:intron 40.0%
! TGTTAGACTTCTTGGTGTAC+TGG + chr4_4:13032513-13032532 Msa0670490:intron 40.0%
ACTTCAGAAAAATGGAGCAG+CGG - chr4_4:13032637-13032656 None:intergenic 40.0%
! GAAGAGCATAGGTGTTTACA+AGG + chr4_4:13032726-13032745 Msa0670490:intron 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG + chr4_4:13032745-13032764 Msa0670490:intron 40.0%
GGACGTTCCGATACAAATAA+CGG + chr4_4:13032813-13032832 Msa0670490:intron 40.0%
GCGAAGACCGTTATTTGTAT+CGG - chr4_4:13032823-13032842 None:intergenic 40.0%
GATACAAATAACGGTCTTCG+CGG + chr4_4:13032822-13032841 Msa0670490:intron 40.0%
!! TTGGTTTGCCAATACACACA+CGG - chr4_4:13033265-13033284 None:intergenic 40.0%
GGATAAGGTTTGTGATCACT+TGG - chr4_4:13033284-13033303 None:intergenic 40.0%
CAACAAAATCGCAAATCGCA+AGG + chr4_4:13033325-13033344 Msa0670490:intron 40.0%
! GTCTGTAATGGAATCCGTAA+CGG + chr4_4:13033563-13033582 Msa0670490:intron 40.0%
CAAGGTTTCAAAAAACGGAC+CGG - chr4_4:13033724-13033743 None:intergenic 40.0%
!!! GGTCCGTTTTTTGAAACCTT+GGG + chr4_4:13033723-13033742 Msa0670490:intron 40.0%
AATTGATGAGTTGTTGGCAG+TGG + chr4_4:13034045-13034064 Msa0670490:intron 40.0%
CAAGCTTGAGTAGACATGAA+AGG - chr4_4:13034090-13034109 None:intergenic 40.0%
CTTTCATGTCTACTCAAGCT+TGG + chr4_4:13034088-13034107 Msa0670490:CDS 40.0%
TGTCTACTCAAGCTTGGATT+AGG + chr4_4:13034094-13034113 Msa0670490:CDS 40.0%
ACTCCATTGTAGATGATTGG+AGG + chr4_4:13034127-13034146 Msa0670490:CDS 40.0%
TTTGTAAATGGTCAAGTGGG+AGG + chr4_4:13034156-13034175 Msa0670490:CDS 40.0%
TTGTAAATGGTCAAGTGGGA+GGG + chr4_4:13034157-13034176 Msa0670490:CDS 40.0%
TTCATAGGCGAAGTAGTCTA+TGG + chr4_4:13034473-13034492 Msa0670490:intron 40.0%
TCCTTTCATGCAGATACACA+AGG + chr4_4:13034799-13034818 Msa0670490:intron 40.0%
TCCTTGTGTATCTGCATGAA+AGG - chr4_4:13034803-13034822 None:intergenic 40.0%
! AATGACTTTTGCAACCGTGA+AGG + chr4_4:13034836-13034855 Msa0670490:CDS 40.0%
! TACACTCCTGAGCAATGTTT+TGG + chr4_4:13035019-13035038 Msa0670490:CDS 40.0%
AACATGCCAAAACATTGCTC+AGG - chr4_4:13035028-13035047 None:intergenic 40.0%
CCCCGTTAGGACATAAAATA+TGG - chr4_4:13035164-13035183 None:intergenic 40.0%
AGTAATGCATAGTTCGTCGG+TGG + chr4_4:13028510-13028529 Msa0670490:intron 45.0%
TAGTTCGTCGGTGGTAAGTA+AGG + chr4_4:13028519-13028538 Msa0670490:intron 45.0%
TTTGATAGGTACGTGGGGTT+AGG + chr4_4:13028716-13028735 Msa0670490:intron 45.0%
TTGATAGGTACGTGGGGTTA+GGG + chr4_4:13028717-13028736 Msa0670490:intron 45.0%
CCAGAAAAAGAAGAACAGCC+AGG - chr4_4:13028836-13028855 None:intergenic 45.0%
! CCTGGCTGTTCTTCTTTTTC+TGG + chr4_4:13028833-13028852 Msa0670490:CDS 45.0%
TTTGTGAGTCGAATTGCGAG+AGG + chr4_4:13029031-13029050 Msa0670490:intron 45.0%
AACACCTTTGTCCATGACTG+TGG - chr4_4:13029768-13029787 None:intergenic 45.0%
! GTAGATTTGCCACTTGGAAC+TGG + chr4_4:13030031-13030050 Msa0670490:CDS 45.0%
TATGCTAACTAGGGTGCAGA+AGG + chr4_4:13030143-13030162 Msa0670490:intron 45.0%
ATGCTAACTAGGGTGCAGAA+GGG + chr4_4:13030144-13030163 Msa0670490:intron 45.0%
!! GCTTTGAAGTCTTTACGCTC+TGG - chr4_4:13030852-13030871 None:intergenic 45.0%
GAAGCAACTGACAGAGATGA+TGG - chr4_4:13030953-13030972 None:intergenic 45.0%
AGGGAAGAGAAATGAGAGAC+TGG + chr4_4:13031555-13031574 Msa0670490:intron 45.0%
GGAACAGATCAAGTCCTGAA+AGG - chr4_4:13031674-13031693 None:intergenic 45.0%
AAAGATCTTCTCCACAGACG+TGG - chr4_4:13031726-13031745 None:intergenic 45.0%
GTGGAGAAGATCTTTGACTC+AGG + chr4_4:13031731-13031750 Msa0670490:CDS 45.0%
ACAACGTTCCCATTTCCCTA+TGG - chr4_4:13032135-13032154 None:intergenic 45.0%
! CCAAGGCGTCTTTCAACTAA+CGG - chr4_4:13032444-13032463 None:intergenic 45.0%
TTGAAAGACGCCTTGGTTAG+TGG + chr4_4:13032448-13032467 Msa0670490:intron 45.0%
ACAAACCACTCCACTAACCA+AGG - chr4_4:13032461-13032480 None:intergenic 45.0%
ATGATAGCTGGTAAGCCCTT+AGG - chr4_4:13032568-13032587 None:intergenic 45.0%
GGCTTACCAGCTATCATTTG+TGG + chr4_4:13032571-13032590 Msa0670490:intron 45.0%
CCTAAGCCACAAATGATAGC+TGG - chr4_4:13032580-13032599 None:intergenic 45.0%
CCAGCTATCATTTGTGGCTT+AGG + chr4_4:13032577-13032596 Msa0670490:intron 45.0%
!! TTGGGACATTGGTGCTACAT+GGG - chr4_4:13032606-13032625 None:intergenic 45.0%
CGTTAAGGTTGTCGCGATTT+CGG + chr4_4:13032783-13032802 Msa0670490:intron 45.0%
TGTCGCGATTTCGGCTATAA+CGG + chr4_4:13032792-13032811 Msa0670490:intron 45.0%
TGCTTGAGGTTTGCGATTTC+TGG - chr4_4:13033376-13033395 None:intergenic 45.0%
TCACACGAAAATCGCCGTTA+CGG - chr4_4:13033621-13033640 None:intergenic 45.0%
AGGTCCAAAAACGATCATGG+TGG + chr4_4:13033661-13033680 Msa0670490:intron 45.0%
!! CTGCCGATACCGATTTGTAA+CGG + chr4_4:13033684-13033703 Msa0670490:intron 45.0%
TTCAAAAAACGGACCGGTAC+CGG - chr4_4:13033718-13033737 None:intergenic 45.0%
!!! CGGTCCGTTTTTTGAAACCT+TGG + chr4_4:13033722-13033741 Msa0670490:intron 45.0%
CGATTCTCGCTCTTCAAAAG+TGG - chr4_4:13033975-13033994 None:intergenic 45.0%
TGGCCTCCAATCATCTACAA+TGG - chr4_4:13034133-13034152 None:intergenic 45.0%
TTGTAGATGATTGGAGGCCA+TGG + chr4_4:13034133-13034152 Msa0670490:CDS 45.0%
! TGGAGGCCATGGTTTGTAAA+TGG + chr4_4:13034144-13034163 Msa0670490:CDS 45.0%
AGGCGAAGTAGTCTATGGTT+TGG + chr4_4:13034478-13034497 Msa0670490:intron 45.0%
! CGAAGTAGTCTATGGTTTGG+TGG + chr4_4:13034481-13034500 Msa0670490:intron 45.0%
CAGCGATGTTCTTACCTTCA+CGG - chr4_4:13034853-13034872 None:intergenic 45.0%
!! GTTTTGGCATGTTCACTAGG+TGG + chr4_4:13035035-13035054 Msa0670490:CDS 45.0%
!!! AATCTTATTATATATTTTTT+TGG - chr4_4:13029507-13029526 None:intergenic 5.0%
!!! AATTAATAATTACTTTTATA+TGG - chr4_4:13033194-13033213 None:intergenic 5.0%
!! ATAAAAAATTATAGAAAAAT+AGG - chr4_4:13034715-13034734 None:intergenic 5.0%
TGATAGGTACGTGGGGTTAG+GGG + chr4_4:13028718-13028737 Msa0670490:intron 50.0%
CTTTGGTTAACTGGTGGTCC+TGG + chr4_4:13028815-13028834 Msa0670490:CDS 50.0%
TGTGGCCTCAAGACCAAACT+AGG - chr4_4:13029750-13029769 None:intergenic 50.0%
!! AAGACATACAAGAGCGCTCC+AGG + chr4_4:13030258-13030277 Msa0670490:intron 50.0%
!! AAGAGCGCTCCAGGAGAAAA+TGG + chr4_4:13030267-13030286 Msa0670490:intron 50.0%
TCTTGAAGAATGGCTGGGAC+AGG - chr4_4:13030586-13030605 None:intergenic 50.0%
!!! GCTCTGGTTTTTAGGGGAAG+GGG - chr4_4:13030836-13030855 None:intergenic 50.0%
!!! CGCTCTGGTTTTTAGGGGAA+GGG - chr4_4:13030837-13030856 None:intergenic 50.0%
!!! ACGCTCTGGTTTTTAGGGGA+AGG - chr4_4:13030838-13030857 None:intergenic 50.0%
! CGTTAGCCCATTTTGTGCTG+AGG - chr4_4:13031907-13031926 None:intergenic 50.0%
TAACGATGAGCGTGTTCGCA+AGG + chr4_4:13031922-13031941 Msa0670490:CDS 50.0%
!! CAAGGCACTGCATATTCGAG+AGG + chr4_4:13031940-13031959 Msa0670490:CDS 50.0%
! TGAGCATTGCAGGGAACCAT+AGG + chr4_4:13032116-13032135 Msa0670490:intron 50.0%
! GAGCATTGCAGGGAACCATA+GGG + chr4_4:13032117-13032136 Msa0670490:intron 50.0%
TGCAGGGAACCATAGGGAAA+TGG + chr4_4:13032123-13032142 Msa0670490:intron 50.0%
GCAGGGAACCATAGGGAAAT+GGG + chr4_4:13032124-13032143 Msa0670490:intron 50.0%
CCGTTAGTTGAAAGACGCCT+TGG + chr4_4:13032441-13032460 Msa0670490:intron 50.0%
!! TGGGACATTGGTGCTACATG+GGG - chr4_4:13032605-13032624 None:intergenic 50.0%
!! GTTGGGACATTGGTGCTACA+TGG - chr4_4:13032607-13032626 None:intergenic 50.0%
! AAAATGGAGCAGCGGACTTG+AGG - chr4_4:13032629-13032648 None:intergenic 50.0%
TTAGTTGAACAGGGCCTCAG+TGG + chr4_4:13032700-13032719 Msa0670490:intron 50.0%
CTATGCTCTTCAGTCCACTG+AGG - chr4_4:13032717-13032736 None:intergenic 50.0%
!! CTCAGTGGACTGAAGAGCAT+AGG + chr4_4:13032715-13032734 Msa0670490:intron 50.0%
GACGTTACGAAACGCCGTTA+CGG - chr4_4:13033599-13033618 None:intergenic 50.0%
GCGTTTCGTAACGTCCGTAA+CGG + chr4_4:13033604-13033623 Msa0670490:intron 50.0%
! GCAGCCACCATGATCGTTTT+TGG - chr4_4:13033668-13033687 None:intergenic 50.0%
CGGCCGTTACAAATCGGTAT+CGG - chr4_4:13033690-13033709 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG - chr4_4:13033696-13033715 None:intergenic 50.0%
ATTTGTAACGGCCGCAATCC+CGG + chr4_4:13033696-13033715 Msa0670490:intron 50.0%
TCAAAAAACGGACCGGTACC+GGG - chr4_4:13033717-13033736 None:intergenic 50.0%
! CATTGCTCAGGAGTGTACTC+AGG - chr4_4:13035016-13035035 None:intergenic 50.0%
! GGTAGTGGCCCTTGAAAACC+AGG - chr4_4:13028256-13028275 None:intergenic 55.0%
!! GCGTGCCTAGTTTGGTCTTG+AGG + chr4_4:13029742-13029761 Msa0670490:CDS 55.0%
! TGGTCTTGAGGCCACAGTCA+TGG + chr4_4:13029754-13029773 Msa0670490:CDS 55.0%
GAGGCCACAGTCATGGACAA+AGG + chr4_4:13029761-13029780 Msa0670490:CDS 55.0%
GTGACGATGATCCACGTCTG+TGG + chr4_4:13031712-13031731 Msa0670490:CDS 55.0%
AACTAACGGCGAAACCGCGA+GGG - chr4_4:13032430-13032449 None:intergenic 55.0%
AGACGCCTTGGTTAGTGGAG+TGG + chr4_4:13032453-13032472 Msa0670490:intron 55.0%
CTGGAACAGTTGCCCCAAGT+CGG + chr4_4:13032532-13032551 Msa0670490:intron 55.0%
TGGAACAGTTGCCCCAAGTC+GGG + chr4_4:13032533-13032552 Msa0670490:intron 55.0%
!! GGACATTGGTGCTACATGGG+GGG - chr4_4:13032603-13032622 None:intergenic 55.0%
!! GGGACATTGGTGCTACATGG+GGG - chr4_4:13032604-13032623 None:intergenic 55.0%
CGGACTTGAGGTTGGGACAT+TGG - chr4_4:13032617-13032636 None:intergenic 55.0%
GAATCCGTAACGGCGTTTCG+CGG + chr4_4:13033573-13033592 Msa0670490:intron 55.0%
TTCTGTGCTTTGCCCCCGTT+AGG - chr4_4:13035177-13035196 None:intergenic 55.0%
TCACGGATCATCGGAGCGAC+TGG + chr4_4:13030074-13030093 Msa0670490:CDS 60.0%
CAACTAACGGCGAAACCGCG+AGG - chr4_4:13032431-13032450 None:intergenic 60.0%
GGAACAGTTGCCCCAAGTCG+GGG + chr4_4:13032534-13032553 Msa0670490:intron 60.0%
TTGCCCCAAGTCGGGGCTAA+GGG + chr4_4:13032541-13032560 Msa0670490:intron 60.0%
! GGAGCAGCGGACTTGAGGTT+GGG - chr4_4:13032624-13032643 None:intergenic 60.0%
! TGGAGCAGCGGACTTGAGGT+TGG - chr4_4:13032625-13032644 None:intergenic 60.0%
! CGACGGGAGCGTGCCTAGTT+TGG + chr4_4:13029734-13029753 Msa0670490:CDS 65.0%
GGGTCTGCTGTAAGCCCTCG+CGG + chr4_4:13032413-13032432 Msa0670490:intron 65.0%
GTTGCCCCAAGTCGGGGCTA+AGG + chr4_4:13032540-13032559 Msa0670490:intron 65.0%
TGCCCCAAGTCGGGGCTAAG+GGG + chr4_4:13032542-13032561 Msa0670490:intron 65.0%
AGGCCCCTTAGCCCCGACTT+GGG - chr4_4:13032548-13032567 None:intergenic 65.0%
TAGGCCCCTTAGCCCCGACT+TGG - chr4_4:13032549-13032568 None:intergenic 65.0%
AGTCGGGGCTAAGGGGCCTA+AGG + chr4_4:13032549-13032568 Msa0670490:intron 65.0%
GTCGGGGCTAAGGGGCCTAA+GGG + chr4_4:13032550-13032569 Msa0670490:intron 65.0%
TCGCGATCGCGGTCGCGTTA+AGG + chr4_4:13032768-13032787 Msa0670490:intron 65.0%
ACGGCCGCGAAACGCCGTTA+CGG - chr4_4:13033580-13033599 None:intergenic 65.0%
ACGGCGTTTCGCGGCCGTAA+CGG + chr4_4:13033582-13033601 Msa0670490:intron 65.0%
AACGGCCGCAATCCCGGTAC+CGG + chr4_4:13033702-13033721 Msa0670490:intron 65.0%
! ACGGACCGGTACCGGGATTG+CGG - chr4_4:13033710-13033729 None:intergenic 65.0%
! GGCCCCTTAGCCCCGACTTG+GGG - chr4_4:13032547-13032566 None:intergenic 70.0%
AACGGTCGCGGTCGCGATCG+CGG + chr4_4:13032757-13032776 Msa0670490:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 13028006 13035268 13028006 ID=Msa0670490;Name=Msa0670490
chr4_4 mRNA 13028006 13035268 13028006 ID=Msa0670490-mRNA-1;Parent=Msa0670490;Name=Msa0670490-mRNA-1;_AED=0.41;_eAED=0.41;_QI=115|0.92|0.86|1|0.92|0.86|15|106|469
chr4_4 exon 13028006 13028293 13028006 ID=Msa0670490-mRNA-1:exon:3946;Parent=Msa0670490-mRNA-1
chr4_4 exon 13028724 13028872 13028724 ID=Msa0670490-mRNA-1:exon:3947;Parent=Msa0670490-mRNA-1
chr4_4 exon 13029706 13029782 13029706 ID=Msa0670490-mRNA-1:exon:3948;Parent=Msa0670490-mRNA-1
chr4_4 exon 13030013 13030132 13030013 ID=Msa0670490-mRNA-1:exon:3949;Parent=Msa0670490-mRNA-1
chr4_4 exon 13030514 13030616 13030514 ID=Msa0670490-mRNA-1:exon:3950;Parent=Msa0670490-mRNA-1
chr4_4 exon 13030904 13030941 13030904 ID=Msa0670490-mRNA-1:exon:3951;Parent=Msa0670490-mRNA-1
chr4_4 exon 13031084 13031182 13031084 ID=Msa0670490-mRNA-1:exon:3952;Parent=Msa0670490-mRNA-1
chr4_4 exon 13031295 13031385 13031295 ID=Msa0670490-mRNA-1:exon:3953;Parent=Msa0670490-mRNA-1
chr4_4 exon 13031679 13031806 13031679 ID=Msa0670490-mRNA-1:exon:3954;Parent=Msa0670490-mRNA-1
chr4_4 exon 13031890 13031961 13031890 ID=Msa0670490-mRNA-1:exon:3955;Parent=Msa0670490-mRNA-1
chr4_4 exon 13032128 13032243 13032128 ID=Msa0670490-mRNA-1:exon:3956;Parent=Msa0670490-mRNA-1
chr4_4 exon 13034065 13034178 13034065 ID=Msa0670490-mRNA-1:exon:3957;Parent=Msa0670490-mRNA-1
chr4_4 exon 13034812 13034857 13034812 ID=Msa0670490-mRNA-1:exon:3958;Parent=Msa0670490-mRNA-1
chr4_4 exon 13034995 13035141 13034995 ID=Msa0670490-mRNA-1:exon:3959;Parent=Msa0670490-mRNA-1
chr4_4 exon 13035226 13035268 13035226 ID=Msa0670490-mRNA-1:exon:3960;Parent=Msa0670490-mRNA-1
chr4_4 five_prime_UTR 13028006 13028120 13028006 ID=Msa0670490-mRNA-1:five_prime_utr;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13028121 13028293 13028121 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13028724 13028872 13028724 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13029706 13029782 13029706 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13030013 13030132 13030013 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13030514 13030616 13030514 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13030904 13030941 13030904 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13031084 13031182 13031084 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13031295 13031385 13031295 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13031679 13031806 13031679 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13031890 13031961 13031890 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13032128 13032243 13032128 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13034065 13034178 13034065 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13034812 13034857 13034812 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 CDS 13034995 13035078 13034995 ID=Msa0670490-mRNA-1:cds;Parent=Msa0670490-mRNA-1
chr4_4 three_prime_UTR 13035079 13035141 13035079 ID=Msa0670490-mRNA-1:three_prime_utr;Parent=Msa0670490-mRNA-1
chr4_4 three_prime_UTR 13035226 13035268 13035226 ID=Msa0670490-mRNA-1:three_prime_utr;Parent=Msa0670490-mRNA-1
Gene Sequence

>Msa0670490

ATGAACATGATGGCTCCTCCTTCTCATAATTCACTTCACTATTGTTGTTGTCAGATACTACTAGCTCTTGGACTATTTAGTTTGAATATGTTAACTCATATTGAAGCTTATGGCTCAAAGGTTGAACAACTTCCTGGTTTTCAAGGGCCACTACCTTTTGAACTTGAAACTGGGTACGTGGGGTTAGGGGAAACAGATGATGACATGCAAGTATTCTACTATTTTATCAAATCAGAAAATGATCCTCAGAAAGATCCTCTTATGCTTTGGTTAACTGGTGGTCCTGGCTGTTCTTCTTTTTCTGGACTTGCCTATCAAATAGGTCCAATTGCATTTGAAATCAAGGAGTACGACGGGAGCGTGCCTAGTTTGGTCTTGAGGCCACAGTCATGGACAAAGCTATGCAGCATTATTTTTGTAGATTTGCCACTTGGAACTGGTTTCTCATATGCAAAAAATGTCACGGATCATCGGAGCGACTGGAAACTAGTTCACCATACTCTTCAATTTCTTAGGAAGTGGCTGATCGATCACTCTGAATTTCTTTCAAATGAATTCTACATTGGAGCTGATTCATACTCAGGCATTCCTGTCCCAGCCATTCTTCAAGAAATTTCAAATGGAAATGAAAAAGGTCTCCAACCATTGATAAATCTCAAGGGATATCTGCTAGGGAACCCTATAACAACACACAGAGAAAAAAATTATCAAATCCCATTTACTCATGGAATGGGAATCATTTCTGATGAACTCTACGCGTCACTGCAGAGAAACTGTAAAAGAGAGTATGTTGATGTAGATTCCAGAAATGAGTTGTGTTTAAGAGATCTCCAATCCTATGATGAGGCAAGACTTGATCTGTTCCACATTTTGGATCGCTTTTGTGACGATGATCCACGTCTGTGGAGAAGATCTTTGACTCAGGAGTTGAAGGAATCTCTTATTTCTCGTCTCACAGTGCCCGAACTAAACTGCCAATTTTATAGTTTTTACCTCAGCACAAAATGGGCTAACGATGAGCGTGTTCGCAAGGCACTGCATATTCGAGAGGGAACCATAGGGAAATGGGAACGTTGTTACTCTAATGATTTTGAGAATGAGATCCTTGGTAGCTTTGAGTTTCATGTAAATTTAAGCAAAAAAGGATACCGCTCTTTGATTTACAGTGGAGATCATGATGCAGTTGTTCCTTTCATGTCTACTCAAGCTTGGATTAGGAATCTAAACTACTCCATTGTAGATGATTGGAGGCCATGGTTTGTAAATGGTCAAGTGGGAGGATACACAAGGACATACTCGAATCGAATGACTTTTGCAACCGTGAAGGGTTCAGGACATACAGCTCCTGAGTACACTCCTGAGCAATGTTTTGGCATGTTCACTAGGTGGATATCTAACTTGCCTTTGTAA
Protein sequence

>Msa0670490

MNMMAPPSHNSLHYCCCQILLALGLFSLNMLTHIEAYGSKVEQLPGFQGPLPFELETGYVGLGETDDDMQVFYYFIKSENDPQKDPLMLWLTGGPGCSSFSGLAYQIGPIAFEIKEYDGSVPSLVLRPQSWTKLCSIIFVDLPLGTGFSYAKNVTDHRSDWKLVHHTLQFLRKWLIDHSEFLSNEFYIGADSYSGIPVPAILQEISNGNEKGLQPLINLKGYLLGNPITTHREKNYQIPFTHGMGIISDELYASLQRNCKREYVDVDSRNELCLRDLQSYDEARLDLFHILDRFCDDDPRLWRRSLTQELKESLISRLTVPELNCQFYSFYLSTKWANDERVRKALHIREGTIGKWERCYSNDFENEILGSFEFHVNLSKKGYRSLIYSGDHDAVVPFMSTQAWIRNLNYSIVDDWRPWFVNGQVGGYTRTYSNRMTFATVKGSGHTAPEYTPEQCFGMFTRWISNLPL*