AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0152910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0152910 MtrunA17_Chr1g0162441 79.215 433 20 4 1 363 1 433 0.0 674
Msa0152910 MtrunA17_Chr4g0033961 56.177 429 119 6 3 363 2 429 2.71e-160 456
Msa0152910 MtrunA17_Chr1g0162411 64.754 122 32 1 1 122 1 111 8.49e-47 165
Msa0152910 MtrunA17_Chr1g0162411 71.875 96 24 3 197 290 297 391 8.76e-36 135
Msa0152910 MtrunA17_Chr8g0390841 29.851 335 186 10 7 328 39 337 5.13e-38 142
Msa0152910 MtrunA17_Chr5g0429931 31.803 305 134 10 22 323 10 243 2.58e-34 127
Msa0152910 MtrunA17_Chr3g0131891 28.182 330 190 9 7 328 19 309 5.12e-33 125
Msa0152910 MtrunA17_Chr1g0162421 89.655 58 6 0 21 78 7 64 2.13e-31 113
Msa0152910 MtrunA17_Chr1g0163071 27.019 322 185 8 23 326 2 291 6.98e-30 116
Msa0152910 MtrunA17_Chr1g0208771 28.616 318 187 9 22 330 12 298 2.21e-29 117
Msa0152910 MtrunA17_Chr7g0233541 24.601 313 201 5 23 328 2 286 6.40e-26 105
Msa0152910 MtrunA17_Chr1g0162431 83.333 54 9 0 275 328 5 58 5.40e-25 96.7
Msa0152910 MtrunA17_Chr7g0233521 25.000 312 184 8 23 328 2 269 3.95e-24 100
Msa0152910 MtrunA17_Chr4g0009491 45.455 88 48 0 7 94 225 312 7.13e-21 93.2
Msa0152910 MtrunA17_Chr4g0009491 41.892 74 43 0 21 94 11 84 3.16e-15 76.6
Msa0152910 MtrunA17_Chr3g0077411 46.067 89 47 1 7 94 262 350 7.66e-21 94.0
Msa0152910 MtrunA17_Chr3g0077411 41.748 103 53 1 7 102 25 127 8.89e-21 93.6
Msa0152910 MtrunA17_Chr3g0103171 25.974 308 173 10 22 321 5 265 8.03e-21 90.9
Msa0152910 MtrunA17_Chr3g0077461 45.882 85 46 0 7 91 237 321 1.07e-20 93.2
Msa0152910 MtrunA17_Chr3g0077461 48.571 70 36 0 22 91 22 91 1.32e-16 80.9
Msa0152910 MtrunA17_Chr3g0077361 28.704 324 121 14 7 319 40 264 1.78e-20 92.8
Msa0152910 MtrunA17_Chr3g0077361 43.662 71 40 0 7 77 289 359 4.51e-16 79.3
Msa0152910 MtrunA17_Chr3g0077361 34.615 130 74 4 198 323 380 502 2.12e-15 77.4
Msa0152910 MtrunA17_Chr3g0077451 38.393 112 57 2 21 129 10 112 2.05e-20 89.0
Msa0152910 MtrunA17_Chr3g0077451 35.075 134 71 5 201 325 111 237 7.80e-13 67.4
Msa0152910 MtrunA17_Chr3g0077381 45.882 85 46 0 7 91 247 331 3.15e-19 88.6
Msa0152910 MtrunA17_Chr3g0077381 45.946 74 40 0 21 94 34 107 9.12e-18 84.3
Msa0152910 MtrunA17_Chr3g0103151 45.882 85 44 1 7 91 12 94 3.19e-18 80.9
Msa0152910 MtrunA17_Chr7g0233561 44.706 85 47 0 7 91 18 102 9.13e-18 83.2
Msa0152910 MtrunA17_Chr7g0233561 30.303 132 84 2 204 327 186 317 2.15e-12 67.4
Msa0152910 MtrunA17_Chr3g0103181 43.529 85 46 1 7 91 12 94 1.97e-17 81.6
Msa0152910 MtrunA17_Chr7g0233571 41.573 89 52 0 3 91 6 94 6.38e-17 79.0
Msa0152910 MtrunA17_Chr1g0154161 26.452 310 176 9 19 321 42 306 3.63e-16 78.6
Msa0152910 MtrunA17_Chr5g0419201 37.500 88 55 0 7 94 16 103 3.65e-16 76.3
Msa0152910 MtrunA17_Chr3g0077421 39.098 133 64 5 201 323 72 197 1.36e-15 74.7
Msa0152910 MtrunA17_Chr3g0077441 39.098 133 64 5 201 323 72 197 1.36e-15 74.7
Msa0152910 MtrunA17_Chr3g0103191 41.176 85 48 1 7 91 12 94 1.52e-15 75.5
Msa0152910 MtrunA17_Chr3g0077431 35.075 134 71 5 201 325 72 198 2.27e-13 68.6
Msa0152910 MtrunA17_Chr7g0233531 42.029 69 40 0 23 91 2 70 2.98e-13 69.3
Msa0152910 MtrunA17_Chr7g0233531 28.682 129 86 2 206 328 141 269 1.28e-11 64.7
Msa0152910 MtrunA17_Chr1g0163091 28.788 132 84 3 199 328 2 125 1.92e-12 64.7
Msa0152910 MtrunA17_Chr1g0154041 36.364 88 55 1 4 91 13 99 2.68e-12 68.2
Msa0152910 MtrunA17_Chr1g0154131 38.636 88 53 1 7 94 26 112 9.25e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0152910 AT3G18990.1 52.825 354 120 8 3 325 2 339 6.03e-117 343
Msa0152910 AT3G18990.2 52.542 354 121 8 3 325 2 339 1.39e-115 340
Msa0152910 AT1G49480.3 72.436 156 36 2 170 325 76 224 1.31e-75 233
Msa0152910 AT1G49480.1 72.436 156 36 2 170 325 76 224 1.31e-75 233
Msa0152910 AT1G49480.2 72.436 156 36 2 170 325 76 224 1.31e-75 233
Msa0152910 AT4G01580.1 40.449 89 53 0 3 91 26 114 2.07e-19 85.5
Msa0152910 AT3G18960.2 39.326 89 54 0 3 91 26 114 8.88e-19 84.0
Msa0152910 AT3G18960.1 39.326 89 54 0 3 91 26 114 9.97e-19 84.0
Msa0152910 AT4G33280.1 24.776 335 203 12 7 327 25 324 2.32e-15 76.6
Msa0152910 AT3G18960.3 38.158 76 47 0 16 91 2 77 8.96e-13 66.2
Msa0152910 AT1G49475.1 34.783 92 56 2 3 91 27 117 1.09e-12 66.6

Find 113 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACATTAGAGAACAATTT+AGG 0.133108 1_4:-15919986 Msa0152910:CDS
AAGAATTTGAACGGTGTTTC+AGG 0.187714 1_4:-15920103 Msa0152910:CDS
AAAAGGTTGACAACCGAATT+TGG 0.209979 1_4:-15921273 Msa0152910:CDS
TCATTGCAGAATTTGTTTAA+TGG 0.251640 1_4:-15920926 Msa0152910:CDS
CTAAACTCAACCACGTTAAC+TGG 0.274983 1_4:-15920898 Msa0152910:CDS
CATTGCAGAATTTGTTTAAT+GGG 0.276665 1_4:-15920925 Msa0152910:CDS
TTATTAACCCCTTCCTCATT+AGG 0.282526 1_4:+15920758 None:intergenic
TGATGGCACTGTCTGGCGTC+TGG 0.293334 1_4:-15921302 Msa0152910:CDS
TATCGACTCCTTTGAATTCC+TGG 0.294296 1_4:-15921044 Msa0152910:CDS
TTGTCCTAGTGCCGTATCTT+GGG 0.306706 1_4:-15919535 Msa0152910:three_prime_UTR
CTTGTCCTAGTGCCGTATCT+TGG 0.309939 1_4:-15919536 Msa0152910:three_prime_UTR
TATTTCCTAAGAAAATTATC+TGG 0.317191 1_4:+15921364 None:intergenic
GTACTCTGGTTTATTCAGTT+TGG 0.321400 1_4:-15919696 Msa0152910:three_prime_UTR
AGACTCATGAAATTAAAATT+AGG 0.322399 1_4:-15923412 Msa0152910:five_prime_UTR
TTACATTAGAGAACAATTTA+GGG 0.336001 1_4:-15919985 Msa0152910:CDS
CTGGCGTCTGGGATTGAAAA+AGG 0.342376 1_4:-15921290 Msa0152910:CDS
AGAGATTCAAAGCATAATCT+TGG 0.363466 1_4:+15923224 None:intergenic
ATCCTTGGCTTAACTTTGCT+CGG 0.390374 1_4:+15920017 None:intergenic
CGTGTAAAAGAGGACGAGTC+AGG 0.395227 1_4:-15919896 Msa0152910:CDS
TTACCAATTGTCTAGTTTGA+AGG 0.397207 1_4:+15923142 None:intergenic
ATCCCTTCAAACTAGACAAT+TGG 0.398966 1_4:-15923145 Msa0152910:intron
TTGCTCGGCCTCCTTTATAT+AGG 0.399413 1_4:+15920032 None:intergenic
TTTATATAGAGGATGTATAA+TGG 0.403472 1_4:-15920240 Msa0152910:intron
CGGCCCTCTTATTTATATAG+AGG 0.407946 1_4:-15920251 Msa0152910:CDS
TTACTCAGATCTAAATTGTT+GGG 0.408825 1_4:+15923282 None:intergenic
TTTCTAGTATTCACTTATGA+AGG 0.411457 1_4:-15921196 Msa0152910:CDS
CTCTTACTTCTGAGTGATCC+TGG 0.420066 1_4:-15919718 Msa0152910:three_prime_UTR
TCTGAGTGATCCTGGTACTC+TGG 0.421596 1_4:-15919710 Msa0152910:three_prime_UTR
ATTCAGTCAACCAGAGATAT+AGG 0.424869 1_4:-15920839 Msa0152910:CDS
ATTACTCAGATCTAAATTGT+TGG 0.426490 1_4:+15923281 None:intergenic
AGCCATCGACAAACCAAATT+CGG 0.433503 1_4:+15921260 None:intergenic
CTGTTCCTGATGGCACTGTC+TGG 0.439890 1_4:-15921309 Msa0152910:CDS
CTTGCAATGCACCAGGAGTA+AGG 0.441488 1_4:+15921005 None:intergenic
GAATTTGGTTTGTCGATGGC+TGG 0.442071 1_4:-15921258 Msa0152910:CDS
TATATCTCTGGTTGACTGAA+TGG 0.443124 1_4:+15920841 None:intergenic
TTAAACAAATTCTGCAATGA+TGG 0.444180 1_4:+15920929 None:intergenic
CACTTTGTTTCGTGTAAAAG+AGG 0.446820 1_4:-15919906 Msa0152910:CDS
CTGAATAGGGTTTGAGGAGA+AGG 0.449747 1_4:-15923315 Msa0152910:five_prime_UTR
ACATCCTCTATATAAATAAG+AGG 0.453294 1_4:+15920247 None:intergenic
TTTGTTCAACGTTACTCCAT+TGG 0.453832 1_4:-15921229 Msa0152910:CDS
CAACGTTACTCCATTGGCAT+TGG 0.459331 1_4:-15921223 Msa0152910:CDS
ATGTAAATTCATACCATCCT+TGG 0.460863 1_4:+15920002 None:intergenic
GATGGCACTGTCTGGCGTCT+GGG 0.465269 1_4:-15921301 Msa0152910:CDS
TAGGCGTTTGAACTTAGTTA+TGG 0.472201 1_4:-15919650 Msa0152910:three_prime_UTR
TGTCTAGTTTGAAGGGATGA+AGG 0.472503 1_4:+15923150 None:intergenic
CCTTTATATAGGCAGCGAAC+AGG 0.472865 1_4:+15920043 None:intergenic
ATTAAGCTTCAGATCTCTGA+TGG 0.476714 1_4:-15920076 Msa0152910:CDS
CACGTTAACTGGGGAGATAT+CGG 0.483067 1_4:-15920887 Msa0152910:CDS
GACTTGCAGCACTACCTCTC+TGG 0.488129 1_4:+15919928 None:intergenic
GCACCAGGAGTAAGGTTTGA+AGG 0.495370 1_4:+15921013 None:intergenic
GGGTTGCAATAGTCGAAAGC+TGG 0.499258 1_4:+15921335 None:intergenic
TAACAGCAGAAGAAAGAGAA+AGG 0.504497 1_4:-15920331 Msa0152910:CDS
GAACTGAACACCTATATCTC+TGG 0.504709 1_4:+15920829 None:intergenic
TAACTAAGTTCAAACGCCTA+TGG 0.505970 1_4:+15919653 None:intergenic
CTGATTTAGTTGAGCTGACA+CGG 0.508771 1_4:+15919801 None:intergenic
ACTCTACAGAATGGATTGGT+TGG 0.509007 1_4:+15920281 None:intergenic
TAAACTCAACCACGTTAACT+GGG 0.517161 1_4:-15920897 Msa0152910:CDS
TACCAATTGTCTAGTTTGAA+GGG 0.519590 1_4:+15923143 None:intergenic
TGAATATAATGACTCAGTTA+CGG 0.523065 1_4:-15919456 Msa0152910:three_prime_UTR
CCTGTTCGCTGCCTATATAA+AGG 0.526982 1_4:-15920043 Msa0152910:CDS
TCACCTTCAAACCTTACTCC+TGG 0.530653 1_4:-15921016 Msa0152910:intron
AGACGCCAGACAGTGCCATC+AGG 0.531089 1_4:+15921304 None:intergenic
AACAGCAGAAGAAAGAGAAA+GGG 0.540440 1_4:-15920330 Msa0152910:CDS
GTCTAGTTTGAAGGGATGAA+GGG 0.543517 1_4:+15923151 None:intergenic
GGTTTGAAGGTGATGAATCC+AGG 0.544026 1_4:+15921026 None:intergenic
CATAAATAGATATATTTCAA+AGG 0.545920 1_4:+15919389 None:intergenic
AGAATGAGCTTGTGAAAAGA+AGG 0.547922 1_4:+15923174 None:intergenic
ATTGCAGAATTTGTTTAATG+GGG 0.548631 1_4:-15920924 Msa0152910:CDS
ATTCAAAGCATAATCTTGGA+AGG 0.549766 1_4:+15923228 None:intergenic
TGATTGAAAGTTGAAAACTT+TGG 0.552047 1_4:+15923254 None:intergenic
CTGACACGGTGCTGCAAGTG+AGG 0.554904 1_4:+15919815 None:intergenic
TGTCCTAGTGCCGTATCTTG+GGG 0.555034 1_4:-15919534 Msa0152910:three_prime_UTR
ACTGAATAAACCAGAGTACC+AGG 0.558954 1_4:+15919700 None:intergenic
TTGCGCTATCCTAATGAGGA+AGG 0.562431 1_4:-15920767 Msa0152910:CDS
TATATAAATAAGAGGGCCGC+AGG 0.564081 1_4:+15920255 None:intergenic
TTAGAGAACAATTTAGGGGA+AGG 0.568521 1_4:-15919980 Msa0152910:CDS
GGCCGAGCAAAGTTAAGCCA+AGG 0.570951 1_4:-15920019 Msa0152910:CDS
CATCCTCTATATAAATAAGA+GGG 0.573160 1_4:+15920248 None:intergenic
TTTGGCTTGGTTGTGAAGAA+GGG 0.575829 1_4:+15919864 None:intergenic
AACCGAATTTGGTTTGTCGA+TGG 0.576855 1_4:-15921262 Msa0152910:CDS
TGCAGAATTTGTTTAATGGG+GGG 0.577486 1_4:-15920922 Msa0152910:CDS
TTGCAGAATTTGTTTAATGG+GGG 0.578544 1_4:-15920923 Msa0152910:CDS
TGCGCTATCCTAATGAGGAA+GGG 0.580496 1_4:-15920766 Msa0152910:CDS
CAAAAGTTAACCCCAAGATA+CGG 0.581416 1_4:+15919524 None:intergenic
GAAATTGCGCTATCCTAATG+AGG 0.581484 1_4:-15920771 Msa0152910:CDS
TTTGCAGAAAAGAATTTGAA+CGG 0.582980 1_4:-15920112 Msa0152910:CDS
GGTTGCAATAGTCGAAAGCT+GGG 0.584695 1_4:+15921336 None:intergenic
TGATGAATCCAGGAATTCAA+AGG 0.585718 1_4:+15921036 None:intergenic
GCGCTATCCTAATGAGGAAG+GGG 0.586754 1_4:-15920765 Msa0152910:intron
GACAACTCTACAGAATGGAT+TGG 0.593488 1_4:+15920277 None:intergenic
CGATATCTCCCCAGTTAACG+TGG 0.595115 1_4:+15920888 None:intergenic
TAGAAAGTATCCAATGCCAA+TGG 0.595339 1_4:+15921213 None:intergenic
CGCAGGACAACTCTACAGAA+TGG 0.599765 1_4:+15920272 None:intergenic
GCAACCCTCACTGTTCCTGA+TGG 0.602871 1_4:-15921319 Msa0152910:CDS
TTAAGCTTCAGATCTCTGAT+GGG 0.604595 1_4:-15920075 Msa0152910:CDS
GCGCAATTTCAATCCTTCAG+TGG 0.610517 1_4:+15920784 None:intergenic
GATGGAGTATGATTCTTCGC+TGG 0.611475 1_4:+15920947 None:intergenic
TAACCCCAAGATACGGCACT+AGG 0.617673 1_4:+15919531 None:intergenic
AGATCTCTGATGGGAGACAG+TGG 0.629937 1_4:-15920066 Msa0152910:CDS
TACATTAGAGAACAATTTAG+GGG 0.630150 1_4:-15919984 Msa0152910:CDS
GTGTAAAAGAGGACGAGTCA+GGG 0.630504 1_4:-15919895 Msa0152910:CDS
GAGCAAAGTTAAGCCAAGGA+TGG 0.643193 1_4:-15920015 Msa0152910:CDS
AATTTCATGAGTCTATCACT+CGG 0.643910 1_4:+15923421 None:intergenic
TGACACGGTGCTGCAAGTGA+GGG 0.655075 1_4:+15919816 None:intergenic
GTTCGCTGCCTATATAAAGG+AGG 0.657822 1_4:-15920040 Msa0152910:CDS
AGTGCCATCAGGAACAGTGA+GGG 0.674235 1_4:+15921315 None:intergenic
TGAGCTGCTTAGAACCAGAG+AGG 0.682743 1_4:-15919942 Msa0152910:CDS
CAGTGCCATCAGGAACAGTG+AGG 0.694859 1_4:+15921314 None:intergenic
TTGTGAAAAGAAGGACGAGG+AGG 0.697547 1_4:+15923183 None:intergenic
AGCTTGTGAAAAGAAGGACG+AGG 0.710821 1_4:+15923180 None:intergenic
AAACTCAACCACGTTAACTG+GGG 0.714026 1_4:-15920896 Msa0152910:CDS
CATTCTGTAGAGTTGTCCTG+CGG 0.717327 1_4:-15920271 Msa0152910:CDS
GTTAACTGGGGAGATATCGG+TGG 0.726802 1_4:-15920884 Msa0152910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTAAATAAAT+TGG + chr1_4:15921189-15921208 None:intergenic 0.0%
!!! TTTTTTGTTTGTTTAATTTA+AGG - chr1_4:15919457-15919476 Msa0152910:three_prime_UTR 10.0%
!!! TCATTTTTTTTTTTTTGAAT+TGG - chr1_4:15919725-15919744 Msa0152910:three_prime_UTR 10.0%
!!! CATTTTTTTTTTTTTGAATT+GGG - chr1_4:15919726-15919745 Msa0152910:three_prime_UTR 10.0%
!! TCCAAACTTTATAAAAAAAA+GGG + chr1_4:15919872-15919891 None:intergenic 15.0%
!! ATCCAAACTTTATAAAAAAA+AGG + chr1_4:15919873-15919892 None:intergenic 15.0%
!!! TATAAAGTTTGGATTTTTTT+AGG - chr1_4:15919879-15919898 Msa0152910:CDS 15.0%
!!! CACATATATTAATGATTTTA+AGG + chr1_4:15920225-15920244 None:intergenic 15.0%
!! CTTAAAATCATTAATATATG+TGG - chr1_4:15920223-15920242 Msa0152910:intron 15.0%
!!! TCTTTTGATCTTTTTAATTT+TGG - chr1_4:15920807-15920826 Msa0152910:CDS 15.0%
!!! TATGAATTTAAGTTTACATA+AGG - chr1_4:15921253-15921272 Msa0152910:CDS 15.0%
!!! ATAATTTTCTTAGGAAATAT+GGG - chr1_4:15921462-15921481 Msa0152910:intron 15.0%
!!! TAGTTTTGAATCTTTTAATA+TGG - chr1_4:15923195-15923214 Msa0152910:exon 15.0%
!!! TTAACTTTTGTTTTTTGTTT+TGG - chr1_4:15923311-15923330 Msa0152910:five_prime_UTR 15.0%
!! AGACTCATGAAATTAAAATT+AGG - chr1_4:15919410-15919429 Msa0152910:three_prime_UTR 20.0%
!!! TTTTGTTTCATGTTTTTGAT+TGG - chr1_4:15919750-15919769 Msa0152910:three_prime_UTR 20.0%
!! TTATGATTGTTGTAAGAAAA+GGG - chr1_4:15919785-15919804 Msa0152910:exon 20.0%
!! CCAAACTTTATAAAAAAAAG+GGG + chr1_4:15919871-15919890 None:intergenic 20.0%
!! TTTAATTGAGACTATCATAT+TGG - chr1_4:15920379-15920398 Msa0152910:CDS 20.0%
!!! CTTTTTAATTTTGGTAAAAG+AGG - chr1_4:15920816-15920835 Msa0152910:CDS 20.0%
!!! AAGCATAAAAGTATTTTTGT+TGG + chr1_4:15921234-15921253 None:intergenic 20.0%
!! TTATGAGCATTACTAATATT+TGG - chr1_4:15921403-15921422 Msa0152910:intron 20.0%
!! TATTTCCTAAGAAAATTATC+TGG + chr1_4:15921461-15921480 None:intergenic 20.0%
!!! GATAATTTTCTTAGGAAATA+TGG - chr1_4:15921461-15921480 Msa0152910:intron 20.0%
!!! TAATTTTCTTAGGAAATATG+GGG - chr1_4:15921463-15921482 Msa0152910:intron 20.0%
!!! AATTTAATTTGTGTAACTGT+AGG - chr1_4:15922385-15922404 Msa0152910:intron 20.0%
!! TTTATATAGAGGATGTATAA+TGG - chr1_4:15922582-15922601 Msa0152910:intron 20.0%
!! TTTACATTAGAGAACAATTT+AGG - chr1_4:15922836-15922855 Msa0152910:intron 20.0%
!! TTACATTAGAGAACAATTTA+GGG - chr1_4:15922837-15922856 Msa0152910:intron 20.0%
!!! TTTGTTTTTTGTTTTGGTTT+TGG - chr1_4:15923317-15923336 Msa0152910:five_prime_UTR 20.0%
! TTTGACTAAAAAGCTGAATA+GGG - chr1_4:15919494-15919513 Msa0152910:three_prime_UTR 25.0%
! TTACTCAGATCTAAATTGTT+GGG + chr1_4:15919543-15919562 None:intergenic 25.0%
! ATTACTCAGATCTAAATTGT+TGG + chr1_4:15919544-15919563 None:intergenic 25.0%
! TGATTGAAAGTTGAAAACTT+TGG + chr1_4:15919571-15919590 None:intergenic 25.0%
! GTTATGATTGTTGTAAGAAA+AGG - chr1_4:15919784-15919803 Msa0152910:exon 25.0%
!! TTGTAAGAAAAGGGTTTTTA+GGG - chr1_4:15919794-15919813 Msa0152910:CDS 25.0%
!!! TATAAAAAAAAGGGGTATCA+GGG + chr1_4:15919863-15919882 None:intergenic 25.0%
!!! TTATAAAAAAAAGGGGTATC+AGG + chr1_4:15919864-15919883 None:intergenic 25.0%
!!! CCCCTTTTTTTTATAAAGTT+TGG - chr1_4:15919868-15919887 Msa0152910:CDS 25.0%
!!! AATTTGATTCAGTGTTGTTT+AGG - chr1_4:15920006-15920025 Msa0152910:CDS 25.0%
!!! GTTTAGGTTTTGTGATTTTT+CGG - chr1_4:15920022-15920041 Msa0152910:CDS 25.0%
!!! TTTAGGTTTTGTGATTTTTC+GGG - chr1_4:15920023-15920042 Msa0152910:CDS 25.0%
!! TTTTAGCCCTAAAATTGAAT+TGG - chr1_4:15920084-15920103 Msa0152910:CDS 25.0%
!! AACCAACCAATTCAATTTTA+GGG + chr1_4:15920093-15920112 None:intergenic 25.0%
!! TAACCAACCAATTCAATTTT+AGG + chr1_4:15920094-15920113 None:intergenic 25.0%
!!! TGATTTTAAGGAAAACATCA+AGG + chr1_4:15920213-15920232 None:intergenic 25.0%
! AGTCTCAATTAAAACACATT+TGG + chr1_4:15920372-15920391 None:intergenic 25.0%
!!! ATTTTTAGTCACTCATTCAA+AGG + chr1_4:15920699-15920718 None:intergenic 25.0%
! AAAAGATCAAAAGAAGTTCA+AGG + chr1_4:15920801-15920820 None:intergenic 25.0%
! AAAACCTCTTCTATTAAGTA+TGG - chr1_4:15920876-15920895 Msa0152910:CDS 25.0%
! TTCTATTAAGTATGGAAAGT+TGG - chr1_4:15920884-15920903 Msa0152910:CDS 25.0%
! AAAAACTACTCATTTCCAAA+TGG + chr1_4:15920927-15920946 None:intergenic 25.0%
! ATAAACATGGAATCATAACA+CGG + chr1_4:15921324-15921343 None:intergenic 25.0%
! AGACAATGAAATCATAAACA+TGG + chr1_4:15921337-15921356 None:intergenic 25.0%
!!! AATGTTATTTTCAATTGCAG+AGG - chr1_4:15921432-15921451 Msa0152910:intron 25.0%
!! TTTCTAGTATTCACTTATGA+AGG - chr1_4:15921626-15921645 Msa0152910:intron 25.0%
!! TATCTTTAATATGAGTACTG+CGG - chr1_4:15921670-15921689 Msa0152910:intron 25.0%
! TCTTCAATGTCTTCAAAAAT+AGG + chr1_4:15921758-15921777 None:intergenic 25.0%
! TTAAACAAATTCTGCAATGA+TGG + chr1_4:15921896-15921915 None:intergenic 25.0%
!! TCATTGCAGAATTTGTTTAA+TGG - chr1_4:15921896-15921915 Msa0152910:intron 25.0%
!! CATTGCAGAATTTGTTTAAT+GGG - chr1_4:15921897-15921916 Msa0152910:intron 25.0%
!! ATTGCAGAATTTGTTTAATG+GGG - chr1_4:15921898-15921917 Msa0152910:intron 25.0%
! CATCCTCTATATAAATAAGA+GGG + chr1_4:15922577-15922596 None:intergenic 25.0%
! ACATCCTCTATATAAATAAG+AGG + chr1_4:15922578-15922597 None:intergenic 25.0%
! TTTGCAGAAAAGAATTTGAA+CGG - chr1_4:15922710-15922729 Msa0152910:intron 25.0%
! TACATTAGAGAACAATTTAG+GGG - chr1_4:15922838-15922857 Msa0152910:intron 25.0%
! TAAATCAGCTAAAAATTAGC+AGG - chr1_4:15923036-15923055 Msa0152910:intron 25.0%
! AAATCAGCTAAAAATTAGCA+GGG - chr1_4:15923037-15923056 Msa0152910:intron 25.0%
!!! AGTTTTGTAATTTGTCTATC+TGG + chr1_4:15923073-15923092 None:intergenic 25.0%
!!! TTGATACTTTTTATGTCCAT+AGG - chr1_4:15923153-15923172 Msa0152910:CDS 25.0%
!!! ATGGATATTTTGTTTTGACT+TGG - chr1_4:15923214-15923233 Msa0152910:five_prime_UTR 25.0%
! TGAATATAATGACTCAGTTA+CGG - chr1_4:15923366-15923385 Msa0152910:five_prime_UTR 25.0%
AATTTCATGAGTCTATCACT+CGG + chr1_4:15919404-15919423 None:intergenic 30.0%
GTTTGACTAAAAAGCTGAAT+AGG - chr1_4:15919493-15919512 Msa0152910:three_prime_UTR 30.0%
ATTCAAAGCATAATCTTGGA+AGG + chr1_4:15919597-15919616 None:intergenic 30.0%
AGAGATTCAAAGCATAATCT+TGG + chr1_4:15919601-15919620 None:intergenic 30.0%
! TACCAATTGTCTAGTTTGAA+GGG + chr1_4:15919682-15919701 None:intergenic 30.0%
! TTACCAATTGTCTAGTTTGA+AGG + chr1_4:15919683-15919702 None:intergenic 30.0%
! GTTGTAAGAAAAGGGTTTTT+AGG - chr1_4:15919793-15919812 Msa0152910:CDS 30.0%
!!! AGGGTTTTGGTTGATTTTTT+AGG - chr1_4:15919813-15919832 Msa0152910:CDS 30.0%
!!! GGGTTTTGGTTGATTTTTTA+GGG - chr1_4:15919814-15919833 Msa0152910:CDS 30.0%
AACTCAGTGATCAAAATCAT+GGG + chr1_4:15919917-15919936 None:intergenic 30.0%
AAACTCAGTGATCAAAATCA+TGG + chr1_4:15919918-15919937 None:intergenic 30.0%
!! ATGATTTTGATCACTGAGTT+TGG - chr1_4:15919917-15919936 Msa0152910:CDS 30.0%
TCTGTTATGATTCTTGATGA+AGG - chr1_4:15919944-15919963 Msa0152910:CDS 30.0%
CTGTTATGATTCTTGATGAA+GGG - chr1_4:15919945-15919964 Msa0152910:CDS 30.0%
CTTTGAATGAGAAATTCTTG+TGG - chr1_4:15920137-15920156 Msa0152910:intron 30.0%
TCTTCTCTTTCACTTAAAAC+AGG + chr1_4:15920308-15920327 None:intergenic 30.0%
TTTAACTACCATGCTGAAAA+TGG + chr1_4:15920525-15920544 None:intergenic 30.0%
AAAAGAAGTTCAAGGATTTG+GGG + chr1_4:15920793-15920812 None:intergenic 30.0%
CAAAAGAAGTTCAAGGATTT+GGG + chr1_4:15920794-15920813 None:intergenic 30.0%
TCAAAAGAAGTTCAAGGATT+TGG + chr1_4:15920795-15920814 None:intergenic 30.0%
CTTTCCATACTTAATAGAAG+AGG + chr1_4:15920883-15920902 None:intergenic 30.0%
ACTAACTACCATGCTAAAAA+CGG + chr1_4:15920963-15920982 None:intergenic 30.0%
! TTTTTAACAGGTCATGTACT+CGG + chr1_4:15921073-15921092 None:intergenic 30.0%
!!! AAAGGTGCGTTTTTTTTAAC+AGG + chr1_4:15921085-15921104 None:intergenic 30.0%
AAAAAAAACGCACCTTTGAA+CGG - chr1_4:15921088-15921107 Msa0152910:intron 30.0%
TTTAAACTCGAGATTTGACT+CGG + chr1_4:15921368-15921387 None:intergenic 30.0%
! GGATTCCAGATAATTTTCTT+AGG - chr1_4:15921453-15921472 Msa0152910:intron 30.0%
! TTGCAGAATTTGTTTAATGG+GGG - chr1_4:15921899-15921918 Msa0152910:intron 30.0%
AGAAAACTTCAAGAAAGAAG+CGG - chr1_4:15922098-15922117 Msa0152910:intron 30.0%
CTTATCTAAAAGAGCTTACT+TGG + chr1_4:15922133-15922152 None:intergenic 30.0%
ATGTAAATTCATACCATCCT+TGG + chr1_4:15922823-15922842 None:intergenic 30.0%
AAAAAGCTGAATAGGGTTTG+AGG - chr1_4:15919501-15919520 Msa0152910:three_prime_UTR 35.0%
AGAATGAGCTTGTGAAAAGA+AGG + chr1_4:15919651-15919670 None:intergenic 35.0%
ATCCCTTCAAACTAGACAAT+TGG - chr1_4:15919677-15919696 Msa0152910:three_prime_UTR 35.0%
!!! GAAAAGGGTTTTTAGGGTTT+TGG - chr1_4:15919800-15919819 Msa0152910:CDS 35.0%
!!! GGTTGATTTTTTAGGGTATG+TGG - chr1_4:15919821-15919840 Msa0152910:CDS 35.0%
!! GTGTTGAAATTTTGATCACC+AGG - chr1_4:15920049-15920068 Msa0152910:CDS 35.0%
AGCCCTAAAATTGAATTGGT+TGG - chr1_4:15920088-15920107 Msa0152910:CDS 35.0%
!! GTTAGTTTGTTTGTGTCTAG+TGG - chr1_4:15920110-15920129 Msa0152910:CDS 35.0%
CACTTAGTAAGTATGACCTT+TGG - chr1_4:15920449-15920468 Msa0152910:intron 35.0%
TACTGGCAATAACAATCCAA+AGG + chr1_4:15920468-15920487 None:intergenic 35.0%
TGTTATTGCCAGTAGCAATT+TGG - chr1_4:15920474-15920493 Msa0152910:intron 35.0%
ACACATTTCCAAATTGCTAC+TGG + chr1_4:15920485-15920504 None:intergenic 35.0%
! ATGAATCTCCATTTTCAGCA+TGG - chr1_4:15920514-15920533 Msa0152910:intron 35.0%
TTTAACAGGGGTCATATACT+CGG + chr1_4:15920667-15920686 None:intergenic 35.0%
!!! AAGGTGCGTTGTTTTTAACA+GGG + chr1_4:15920680-15920699 None:intergenic 35.0%
!!! AAAGGTGCGTTGTTTTTAAC+AGG + chr1_4:15920681-15920700 None:intergenic 35.0%
! AAACCTTTTCTCACCAGAAA+AGG - chr1_4:15920765-15920784 Msa0152910:intron 35.0%
CTAGGAAATTTGAGGATTTG+CGG + chr1_4:15920844-15920863 None:intergenic 35.0%
TTGCATGTCTAGGAAATTTG+AGG + chr1_4:15920852-15920871 None:intergenic 35.0%
! GGTTTTTCATTTGCATGTCT+AGG + chr1_4:15920862-15920881 None:intergenic 35.0%
!! AATTGGTTCGACCTAAGTAT+GGG + chr1_4:15921172-15921191 None:intergenic 35.0%
!! AAATTGGTTCGACCTAAGTA+TGG + chr1_4:15921173-15921192 None:intergenic 35.0%
AAAAGGTTGACAACCGAATT+TGG - chr1_4:15921549-15921568 Msa0152910:intron 35.0%
TTTGTTCAACGTTACTCCAT+TGG - chr1_4:15921593-15921612 Msa0152910:intron 35.0%
!! TAGAAAGTATCCAATGCCAA+TGG + chr1_4:15921612-15921631 None:intergenic 35.0%
! GGATGATAATTTGCATAGCA+AGG + chr1_4:15921737-15921756 None:intergenic 35.0%
TGATGAATCCAGGAATTCAA+AGG + chr1_4:15921789-15921808 None:intergenic 35.0%
!! TTGCAAGACAAGGTTTTTAG+TGG - chr1_4:15921833-15921852 Msa0152910:intron 35.0%
!!! CAAGGTTTTTAGTGGATCTT+TGG - chr1_4:15921841-15921860 Msa0152910:intron 35.0%
! TGCAGAATTTGTTTAATGGG+GGG - chr1_4:15921900-15921919 Msa0152910:intron 35.0%
TAAACTCAACCACGTTAACT+GGG - chr1_4:15921925-15921944 Msa0152910:intron 35.0%
TATATCTCTGGTTGACTGAA+TGG + chr1_4:15921984-15922003 None:intergenic 35.0%
ATTCAGTCAACCAGAGATAT+AGG - chr1_4:15921983-15922002 Msa0152910:intron 35.0%
GAGTTTAAAAAGTCCACTGA+AGG - chr1_4:15922025-15922044 Msa0152910:intron 35.0%
TTATTAACCCCTTCCTCATT+AGG + chr1_4:15922067-15922086 None:intergenic 35.0%
!! GCACTGACATTTTAGATCAA+AGG - chr1_4:15922182-15922201 Msa0152910:intron 35.0%
!!! TCACCTTTTGAAATGATGAC+CGG - chr1_4:15922280-15922299 Msa0152910:intron 35.0%
TAACAGCAGAAGAAAGAGAA+AGG - chr1_4:15922491-15922510 Msa0152910:intron 35.0%
AACAGCAGAAGAAAGAGAAA+GGG - chr1_4:15922492-15922511 Msa0152910:intron 35.0%
GAAATGTCGAAGAAGACTAA+AGG + chr1_4:15922640-15922659 None:intergenic 35.0%
! CAAATTCTTTTCTGCAAAGC+AGG + chr1_4:15922708-15922727 None:intergenic 35.0%
AAGAATTTGAACGGTGTTTC+AGG - chr1_4:15922719-15922738 Msa0152910:intron 35.0%
ATTAAGCTTCAGATCTCTGA+TGG - chr1_4:15922746-15922765 Msa0152910:intron 35.0%
TTAAGCTTCAGATCTCTGAT+GGG - chr1_4:15922747-15922766 Msa0152910:intron 35.0%
TTAGAGAACAATTTAGGGGA+AGG - chr1_4:15922842-15922861 Msa0152910:intron 35.0%
! CACTTTGTTTCGTGTAAAAG+AGG - chr1_4:15922916-15922935 Msa0152910:intron 35.0%
! TTTTTGCATGGCTCACATTT+TGG + chr1_4:15922979-15922998 None:intergenic 35.0%
! GTACTCTGGTTTATTCAGTT+TGG - chr1_4:15923126-15923145 Msa0152910:intron 35.0%
TAACTAAGTTCAAACGCCTA+TGG + chr1_4:15923172-15923191 None:intergenic 35.0%
TAGGCGTTTGAACTTAGTTA+TGG - chr1_4:15923172-15923191 Msa0152910:CDS 35.0%
CAAAAGTTAACCCCAAGATA+CGG + chr1_4:15923301-15923320 None:intergenic 35.0%
! GTCTAGTTTGAAGGGATGAA+GGG + chr1_4:15919674-15919693 None:intergenic 40.0%
! TGTCTAGTTTGAAGGGATGA+AGG + chr1_4:15919675-15919694 None:intergenic 40.0%
CTAAAATCAACTCAGCAACC+TGG + chr1_4:15920070-15920089 None:intergenic 40.0%
ATCTCAAACCTAATCGCAGA+TGG - chr1_4:15920608-15920627 Msa0152910:intron 40.0%
AAATTAACACACACGACCAC+AGG + chr1_4:15920640-15920659 None:intergenic 40.0%
TGGTCGTGTGTGTTAATTTC+AGG - chr1_4:15920641-15920660 Msa0152910:intron 40.0%
!!! AGGTGCGTTGTTTTTAACAG+GGG + chr1_4:15920679-15920698 None:intergenic 40.0%
GGCTTTACATTTGCAGATCT+AGG + chr1_4:15920732-15920751 None:intergenic 40.0%
!! AAAGGTTTTCTGGTGAGAAG+AGG + chr1_4:15920753-15920772 None:intergenic 40.0%
! TCTGGTGAGAAAAGGTTTTC+TGG + chr1_4:15920763-15920782 None:intergenic 40.0%
! GAAAGTTGGATTGCTATTGC+TGG - chr1_4:15920898-15920917 Msa0152910:CDS 40.0%
!!! ACGAATCTCCGTTTTTAGCA+TGG - chr1_4:15920952-15920971 Msa0152910:CDS 40.0%
ATATCGCACCTAATCACTGA+TGG - chr1_4:15921041-15921060 Msa0152910:CDS 40.0%
GGCAAAAACCATCAGTGATT+AGG + chr1_4:15921052-15921071 None:intergenic 40.0%
CAAGGAAGTTTGAGGATTCT+CGG + chr1_4:15921119-15921138 None:intergenic 40.0%
!! AACCGAATTTGGTTTGTCGA+TGG - chr1_4:15921560-15921579 Msa0152910:intron 40.0%
AGCCATCGACAAACCAAATT+CGG + chr1_4:15921565-15921584 None:intergenic 40.0%
!! TATCGACTCCTTTGAATTCC+TGG - chr1_4:15921778-15921797 Msa0152910:intron 40.0%
CTAAACTCAACCACGTTAAC+TGG - chr1_4:15921924-15921943 Msa0152910:intron 40.0%
AAACTCAACCACGTTAACTG+GGG - chr1_4:15921926-15921945 Msa0152910:intron 40.0%
GAACTGAACACCTATATCTC+TGG + chr1_4:15921996-15922015 None:intergenic 40.0%
GAAATTGCGCTATCCTAATG+AGG - chr1_4:15922051-15922070 Msa0152910:intron 40.0%
AATGATGTGTGTCAGACACT+CGG + chr1_4:15922213-15922232 None:intergenic 40.0%
ACACCGGTCATCATTTCAAA+AGG + chr1_4:15922286-15922305 None:intergenic 40.0%
!! ACTCTACAGAATGGATTGGT+TGG + chr1_4:15922544-15922563 None:intergenic 40.0%
GACAACTCTACAGAATGGAT+TGG + chr1_4:15922548-15922567 None:intergenic 40.0%
TATATAAATAAGAGGGCCGC+AGG + chr1_4:15922570-15922589 None:intergenic 40.0%
! CGGCCCTCTTATTTATATAG+AGG - chr1_4:15922571-15922590 Msa0152910:intron 40.0%
! TTCTTTTCTGCAAAGCAGGA+AGG + chr1_4:15922704-15922723 None:intergenic 40.0%
ATCCTTGGCTTAACTTTGCT+CGG + chr1_4:15922808-15922827 None:intergenic 40.0%
!! TTTGGCTTGGTTGTGAAGAA+GGG + chr1_4:15922961-15922980 None:intergenic 40.0%
!!! TTTTGGCTTGGTTGTGAAGA+AGG + chr1_4:15922962-15922981 None:intergenic 40.0%
! GAGGGTTCAACATTTTTGCA+TGG + chr1_4:15922991-15923010 None:intergenic 40.0%
CTGATTTAGTTGAGCTGACA+CGG + chr1_4:15923024-15923043 None:intergenic 40.0%
! ACTGAATAAACCAGAGTACC+AGG + chr1_4:15923125-15923144 None:intergenic 40.0%
CTGAATAGGGTTTGAGGAGA+AGG - chr1_4:15919507-15919526 Msa0152910:three_prime_UTR 45.0%
TTGTGAAAAGAAGGACGAGG+AGG + chr1_4:15919642-15919661 None:intergenic 45.0%
AGCTTGTGAAAAGAAGGACG+AGG + chr1_4:15919645-15919664 None:intergenic 45.0%
GGCAAAAACCATCTGCGATT+AGG + chr1_4:15920619-15920638 None:intergenic 45.0%
TTGCAGATCTAGGAAGTTCG+AGG + chr1_4:15920722-15920741 None:intergenic 45.0%
!! GCTCCTTTTCTGGTGAGAAA+AGG + chr1_4:15920771-15920790 None:intergenic 45.0%
TGCTATTGCTGGTAGCCATT+TGG - chr1_4:15920909-15920928 Msa0152910:CDS 45.0%
TTCTCGGTCAAACCGTTCAA+AGG + chr1_4:15921103-15921122 None:intergenic 45.0%
CGAGAATCCTCAAACTTCCT+TGG - chr1_4:15921117-15921136 Msa0152910:intron 45.0%
GCAAAGACCAAGGAAGTTTG+AGG + chr1_4:15921127-15921146 None:intergenic 45.0%
GGTTGCAATAGTCGAAAGCT+GGG + chr1_4:15921489-15921508 None:intergenic 45.0%
!! GAATTTGGTTTGTCGATGGC+TGG - chr1_4:15921564-15921583 Msa0152910:intron 45.0%
CAACGTTACTCCATTGGCAT+TGG - chr1_4:15921599-15921618 Msa0152910:intron 45.0%
GGTTTGAAGGTGATGAATCC+AGG + chr1_4:15921799-15921818 None:intergenic 45.0%
TCACCTTCAAACCTTACTCC+TGG - chr1_4:15921806-15921825 Msa0152910:intron 45.0%
GATGGAGTATGATTCTTCGC+TGG + chr1_4:15921878-15921897 None:intergenic 45.0%
CACGTTAACTGGGGAGATAT+CGG - chr1_4:15921935-15921954 Msa0152910:intron 45.0%
GCGCAATTTCAATCCTTCAG+TGG + chr1_4:15922041-15922060 None:intergenic 45.0%
TTGCGCTATCCTAATGAGGA+AGG - chr1_4:15922055-15922074 Msa0152910:intron 45.0%
TGCGCTATCCTAATGAGGAA+GGG - chr1_4:15922056-15922075 Msa0152910:intron 45.0%
ATGATGTGTGTCAGACACTC+GGG + chr1_4:15922212-15922231 None:intergenic 45.0%
CTTCCTGTGTCAGTGTTTCA+TGG - chr1_4:15922325-15922344 Msa0152910:intron 45.0%
TAGCCATGAAACACTGACAC+AGG + chr1_4:15922331-15922350 None:intergenic 45.0%
TTGTGTAACTGTAGGTGCAC+TGG - chr1_4:15922393-15922412 Msa0152910:intron 45.0%
AGCCACTGCTGAAAATGATG+AGG - chr1_4:15922417-15922436 Msa0152910:intron 45.0%
! CTCCTCATCATTTTCAGCAG+TGG + chr1_4:15922422-15922441 None:intergenic 45.0%
CACTGCTGAAAATGATGAGG+AGG - chr1_4:15922420-15922439 Msa0152910:intron 45.0%
CATTCTGTAGAGTTGTCCTG+CGG - chr1_4:15922551-15922570 Msa0152910:intron 45.0%
CAAAGCAGGAAGGCAAATAC+TGG + chr1_4:15922694-15922713 None:intergenic 45.0%
CCTTTATATAGGCAGCGAAC+AGG + chr1_4:15922782-15922801 None:intergenic 45.0%
CCTGTTCGCTGCCTATATAA+AGG - chr1_4:15922779-15922798 Msa0152910:intron 45.0%
GTTCGCTGCCTATATAAAGG+AGG - chr1_4:15922782-15922801 Msa0152910:intron 45.0%
TTGCTCGGCCTCCTTTATAT+AGG + chr1_4:15922793-15922812 None:intergenic 45.0%
GAGCAAAGTTAAGCCAAGGA+TGG - chr1_4:15922807-15922826 Msa0152910:intron 45.0%
GTGTAAAAGAGGACGAGTCA+GGG - chr1_4:15922927-15922946 Msa0152910:intron 45.0%
CTCTTACTTCTGAGTGATCC+TGG - chr1_4:15923104-15923123 Msa0152910:intron 45.0%
TTGTCCTAGTGCCGTATCTT+GGG - chr1_4:15923287-15923306 Msa0152910:five_prime_UTR 45.0%
! TCGCAGATGGTTTTTGCCTG+TGG - chr1_4:15920621-15920640 Msa0152910:intron 50.0%
!! AGGATTTGGGGCTCCTTTTC+TGG + chr1_4:15920781-15920800 None:intergenic 50.0%
! CTTCCTTGGTCTTTGCTCGT+TGG - chr1_4:15921131-15921150 Msa0152910:intron 50.0%
CTACCAACGAGCAAAGACCA+AGG + chr1_4:15921137-15921156 None:intergenic 50.0%
!! CTCGTTGGTAGTGCACCATT+GGG - chr1_4:15921146-15921165 Msa0152910:intron 50.0%
GGGTTGCAATAGTCGAAAGC+TGG + chr1_4:15921490-15921509 None:intergenic 50.0%
AGTGCCATCAGGAACAGTGA+GGG + chr1_4:15921510-15921529 None:intergenic 50.0%
! CTGGCGTCTGGGATTGAAAA+AGG - chr1_4:15921532-15921551 Msa0152910:intron 50.0%
CCATGAGAAGCCGTACTGAA+GGG - chr1_4:15921711-15921730 Msa0152910:intron 50.0%
CATAGCAAGGCCCTTCAGTA+CGG + chr1_4:15921724-15921743 None:intergenic 50.0%
GCACCAGGAGTAAGGTTTGA+AGG + chr1_4:15921812-15921831 None:intergenic 50.0%
CTTGCAATGCACCAGGAGTA+AGG + chr1_4:15921820-15921839 None:intergenic 50.0%
TCCTGGTGCATTGCAAGACA+AGG - chr1_4:15921823-15921842 Msa0152910:intron 50.0%
ACCTTGTCTTGCAATGCACC+AGG + chr1_4:15921827-15921846 None:intergenic 50.0%
CGATATCTCCCCAGTTAACG+TGG + chr1_4:15921937-15921956 None:intergenic 50.0%
GTTAACTGGGGAGATATCGG+TGG - chr1_4:15921938-15921957 Msa0152910:intron 50.0%
GCGCTATCCTAATGAGGAAG+GGG - chr1_4:15922057-15922076 Msa0152910:intron 50.0%
AACCACACGTGTCAGTGTAG+CGG + chr1_4:15922247-15922266 None:intergenic 50.0%
CGACACTGAGATGACAACAC+CGG + chr1_4:15922302-15922321 None:intergenic 50.0%
CGCAGGACAACTCTACAGAA+TGG + chr1_4:15922553-15922572 None:intergenic 50.0%
AGATCTCTGATGGGAGACAG+TGG - chr1_4:15922756-15922775 Msa0152910:intron 50.0%
TGAGCTGCTTAGAACCAGAG+AGG - chr1_4:15922880-15922899 Msa0152910:intron 50.0%
CGTGTAAAAGAGGACGAGTC+AGG - chr1_4:15922926-15922945 Msa0152910:intron 50.0%
!!! GCATGGCTCACATTTTGGCT+TGG + chr1_4:15922974-15922993 None:intergenic 50.0%
TCTGAGTGATCCTGGTACTC+TGG - chr1_4:15923112-15923131 Msa0152910:intron 50.0%
CTTGTCCTAGTGCCGTATCT+TGG - chr1_4:15923286-15923305 Msa0152910:five_prime_UTR 50.0%
TGTCCTAGTGCCGTATCTTG+GGG - chr1_4:15923288-15923307 Msa0152910:five_prime_UTR 50.0%
TAACCCCAAGATACGGCACT+AGG + chr1_4:15923294-15923313 None:intergenic 50.0%
!! GCTCGTTGGTAGTGCACCAT+TGG - chr1_4:15921145-15921164 Msa0152910:intron 55.0%
GCACCATTGGGCCCATACTT+AGG - chr1_4:15921158-15921177 Msa0152910:intron 55.0%
CGACCTAAGTATGGGCCCAA+TGG + chr1_4:15921164-15921183 None:intergenic 55.0%
GCAACCCTCACTGTTCCTGA+TGG - chr1_4:15921503-15921522 Msa0152910:intron 55.0%
CAGTGCCATCAGGAACAGTG+AGG + chr1_4:15921511-15921530 None:intergenic 55.0%
CTGTTCCTGATGGCACTGTC+TGG - chr1_4:15921513-15921532 Msa0152910:intron 55.0%
GCCATGAGAAGCCGTACTGA+AGG - chr1_4:15921710-15921729 Msa0152910:intron 55.0%
CCCTTCAGTACGGCTTCTCA+TGG + chr1_4:15921714-15921733 None:intergenic 55.0%
GGCCGAGCAAAGTTAAGCCA+AGG - chr1_4:15922803-15922822 Msa0152910:intron 55.0%
GACTTGCAGCACTACCTCTC+TGG + chr1_4:15922897-15922916 None:intergenic 55.0%
!! TGACACGGTGCTGCAAGTGA+GGG + chr1_4:15923009-15923028 None:intergenic 55.0%
AGACGCCAGACAGTGCCATC+AGG + chr1_4:15921521-15921540 None:intergenic 60.0%
TGATGGCACTGTCTGGCGTC+TGG - chr1_4:15921520-15921539 Msa0152910:intron 60.0%
GATGGCACTGTCTGGCGTCT+GGG - chr1_4:15921521-15921540 Msa0152910:intron 60.0%
TGTCAGTGTAGCGGCGGAGT+AGG + chr1_4:15922238-15922257 None:intergenic 60.0%
CACACGTGTCAGTGTAGCGG+CGG + chr1_4:15922244-15922263 None:intergenic 60.0%
!! CTGACACGGTGCTGCAAGTG+AGG + chr1_4:15923010-15923029 None:intergenic 60.0%
CGCCGCTACACTGACACGTG+TGG - chr1_4:15922242-15922261 Msa0152910:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 15919399 15923445 15919399 ID=Msa0152910;Name=Msa0152910
chr1_4 mRNA 15919399 15923445 15919399 ID=Msa0152910-mRNA-1;Parent=Msa0152910;Name=Msa0152910-mRNA-1;_AED=0.12;_eAED=0.12;_QI=237|0.4|0.33|1|0.4|0.33|6|391|363
chr1_4 exon 15919399 15920149 15919399 ID=Msa0152910-mRNA-1:exon:6161;Parent=Msa0152910-mRNA-1
chr1_4 exon 15920241 15920402 15920241 ID=Msa0152910-mRNA-1:exon:6160;Parent=Msa0152910-mRNA-1
chr1_4 exon 15920766 15920999 15920766 ID=Msa0152910-mRNA-1:exon:6159;Parent=Msa0152910-mRNA-1
chr1_4 exon 15921017 15921076 15921017 ID=Msa0152910-mRNA-1:exon:6158;Parent=Msa0152910-mRNA-1
chr1_4 exon 15921180 15921392 15921180 ID=Msa0152910-mRNA-1:exon:6157;Parent=Msa0152910-mRNA-1
chr1_4 exon 15923146 15923445 15923146 ID=Msa0152910-mRNA-1:exon:6156;Parent=Msa0152910-mRNA-1
chr1_4 five_prime_UTR 15923209 15923445 15923209 ID=Msa0152910-mRNA-1:five_prime_utr;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15923146 15923208 15923146 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15921180 15921392 15921180 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15921017 15921076 15921017 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15920766 15920999 15920766 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15920241 15920402 15920241 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 CDS 15919790 15920149 15919790 ID=Msa0152910-mRNA-1:cds;Parent=Msa0152910-mRNA-1
chr1_4 three_prime_UTR 15919399 15919789 15919399 ID=Msa0152910-mRNA-1:three_prime_utr;Parent=Msa0152910-mRNA-1
Gene Sequence

>Msa0152910

ATGCCTCCTCGTCCTTCTTTTCACAAGCTCATTCTCCCTTCATCCCTTCAAACTAGACAATTGAGGATTCCAGATAATTTTCTTAGGAAATATGGGGCCCAGCTTTCGACTATTGCAACCCTCACTGTTCCTGATGGCACTGTCTGGCGTCTGGGATTGAAAAAGGTTGACAACCGAATTTGGTTTGTCGATGGCTGGCAAGATTTTGTTCAACGTTACTCCATTGGCATTGGATACTTTCTAGTATTCACTTATGAAGGAAATTCAAATTTCATTACATTGAAGATATCGACTCCTTTGAATTCCTGGATTCATCACCTTCAAACCTTACTCCTGGTTTTTAGTGGATCTTTGGATCAACTAACACCAGCGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGGGGGTCTAAACTCAACCACGTTAACTGGGGAGATATCGGTGGTACTCTTTCTTCAAAGAGTGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCTAATGAGTTTAAAAAGTCCACTGAAGGATTGAAATTGCGCTATCCTAATGAGGAAGGGGCAGAGCGCTATCGATTCTATGAAAGTGCGTCAGCAAGAAAAAGAACTGTAACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGTCAAAGACTTTTGAACCAACCAATCCATTCTGTAGAGTTGTCCTGCGGCCCTCTTATTTATATAGAGGATGTATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAATTTGAACGGTGTTTCAGGATTCATTAAGCTTCAGATCTCTGATGGGAGACAGTGGCCTGTTCGCTGCCTATATAAAGGAGGCCGAGCAAAGTTAAGCCAAGGATGGTATGAATTTACATTAGAGAACAATTTAGGGGAAGGCGATATCTGTGTTTTTGAGCTGCTTAGAACCAGAGAGGTAGTGCTGCAAGTCACTTTGTTTCGTGTAAAAGAGGACGAGTCAGGGTTATTCAACCCTTCTTCACAACCAAGCCAAAATGTGAGCCATGCAAAAATGTTGAACCCTCACTTGCAGCACCGTGTCAGCTCAACTAAATCAGCTAAAAATTAG

Protein sequence

>Msa0152910

MPPRPSFHKLILPSSLQTRQLRIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYSIGIGYFLVFTYEGNSNFITLKISTPLNSWIHHLQTLLLVFSGSLDQLTPAKNHTPSLQNLFNGGSKLNHVNWGDIGGTLSSKSAIQSTRDIGVQFNANEFKKSTEGLKLRYPNEEGAERYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNLGEGDICVFELLRTREVVLQVTLFRVKEDESGLFNPSSQPSQNVSHAKMLNPHLQHRVSSTKSAKN*