Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450140 | XP_013461068.1 | 66.667 | 165 | 38 | 2 | 1 | 148 | 1 | 165 | 2.36e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450140 | I3T390 | 66.667 | 165 | 38 | 2 | 1 | 148 | 1 | 165 | 1.13e-62 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0450140 | 0.809354 | 1.972629e-50 | -8.615850e-47 |
| Msa0008090 | Msa0450140 | 0.822972 | 1.779276e-53 | -8.615850e-47 |
| Msa0029260 | Msa0450140 | 0.824460 | 7.974842e-54 | -8.615850e-47 |
| Msa0033880 | Msa0450140 | 0.839155 | 1.876834e-57 | -8.615850e-47 |
| Msa0038000 | Msa0450140 | 0.823462 | 1.366973e-53 | -8.615850e-47 |
| Msa0038440 | Msa0450140 | 0.826440 | 2.709726e-54 | -8.615850e-47 |
| Msa0041690 | Msa0450140 | 0.828088 | 1.092010e-54 | -8.615850e-47 |
| Msa0043860 | Msa0450140 | 0.828779 | 7.437756e-55 | -8.615850e-47 |
| Msa0055100 | Msa0450140 | 0.804068 | 2.579630e-49 | -8.615850e-47 |
| Msa0081650 | Msa0450140 | 0.805407 | 1.354835e-49 | -8.615850e-47 |
| Msa0093010 | Msa0450140 | 0.809050 | 2.291804e-50 | -8.615850e-47 |
| Msa0097950 | Msa0450140 | 0.816489 | 5.385509e-52 | -8.615850e-47 |
| Msa0106620 | Msa0450140 | 0.802355 | 5.834533e-49 | -8.615850e-47 |
| Msa0106710 | Msa0450140 | 0.803291 | 3.738626e-49 | -8.615850e-47 |
| Msa0115370 | Msa0450140 | 0.809034 | 2.309678e-50 | -8.615850e-47 |
| Msa0123510 | Msa0450140 | 0.815484 | 9.029158e-52 | -8.615850e-47 |
| Msa0127850 | Msa0450140 | 0.857763 | 1.308053e-62 | -8.615850e-47 |
| Msa0132830 | Msa0450140 | 0.802940 | 4.420442e-49 | -8.615850e-47 |
| Msa0136120 | Msa0450140 | 0.827793 | 1.285430e-54 | -8.615850e-47 |
| Msa0138360 | Msa0450140 | 0.802028 | 6.812663e-49 | -8.615850e-47 |
| Msa0147980 | Msa0450140 | 0.822860 | 1.889672e-53 | -8.615850e-47 |
| Msa0169300 | Msa0450140 | 0.823280 | 1.508256e-53 | -8.615850e-47 |
| Msa0174000 | Msa0450140 | 0.830501 | 2.834140e-55 | -8.615850e-47 |
| Msa0206690 | Msa0450140 | 0.800293 | 1.542649e-48 | -8.615850e-47 |
| Msa0209080 | Msa0450140 | 0.803551 | 3.302932e-49 | -8.615850e-47 |
| Msa0221600 | Msa0450140 | 0.804122 | 2.514179e-49 | -8.615850e-47 |
| Msa0365700 | Msa0450140 | 0.811473 | 6.878211e-51 | -8.615850e-47 |
| Msa0378970 | Msa0450140 | 0.817118 | 3.892651e-52 | -8.615850e-47 |
| Msa0384670 | Msa0450140 | 0.841109 | 5.798696e-58 | -8.615850e-47 |
| Msa0416960 | Msa0450140 | 0.817411 | 3.343214e-52 | -8.615850e-47 |
| Msa0419720 | Msa0450140 | 0.820149 | 7.987349e-53 | -8.615850e-47 |
| Msa0434570 | Msa0450140 | 0.848451 | 6.078251e-60 | -8.615850e-47 |
| Msa0434770 | Msa0450140 | 0.842944 | 1.897437e-58 | -8.615850e-47 |
| Msa0443430 | Msa0450140 | 0.800568 | 1.356082e-48 | -8.615850e-47 |
| Msa0450140 | Msa0458780 | 0.800623 | 1.321552e-48 | -8.615850e-47 |
| Msa0450140 | Msa0478580 | 0.835164 | 1.968068e-56 | -8.615850e-47 |
| Msa0450140 | Msa0482940 | 0.803813 | 2.914835e-49 | -8.615850e-47 |
| Msa0450140 | Msa0484740 | 0.802412 | 5.679640e-49 | -8.615850e-47 |
| Msa0450140 | Msa0509120 | 0.805267 | 1.449898e-49 | -8.615850e-47 |
| Msa0450140 | Msa0511770 | 0.899769 | 1.426595e-77 | -8.615850e-47 |
| Msa0450140 | Msa0518030 | 0.821821 | 3.293846e-53 | -8.615850e-47 |
| Msa0450140 | Msa0531250 | 0.825205 | 5.321101e-54 | -8.615850e-47 |
| Msa0450140 | Msa0547990 | 0.828370 | 9.335968e-55 | -8.615850e-47 |
| Msa0450140 | Msa0550570 | 0.802656 | 5.059514e-49 | -8.615850e-47 |
| Msa0450140 | Msa0565940 | 0.808860 | 2.516111e-50 | -8.615850e-47 |
| Msa0450140 | Msa0588090 | 0.827969 | 1.166147e-54 | -8.615850e-47 |
| Msa0450140 | Msa0593700 | 0.804420 | 2.179360e-49 | -8.615850e-47 |
| Msa0450140 | Msa0614510 | 0.808830 | 2.553386e-50 | -8.615850e-47 |
| Msa0450140 | Msa0618950 | 0.803363 | 3.613772e-49 | -8.615850e-47 |
| Msa0450140 | Msa0619860 | 0.806851 | 6.730596e-50 | -8.615850e-47 |
| Msa0450140 | Msa0620330 | 0.800783 | 1.225500e-48 | -8.615850e-47 |
| Msa0450140 | Msa0628420 | 0.834447 | 2.980812e-56 | -8.615850e-47 |
| Msa0450140 | Msa0644030 | 0.832686 | 8.202847e-56 | -8.615850e-47 |
| Msa0450140 | Msa0656960 | 0.817156 | 3.815945e-52 | -8.615850e-47 |
| Msa0450140 | Msa0662630 | 0.836600 | 8.508703e-57 | -8.615850e-47 |
| Msa0450140 | Msa0673270 | 0.807346 | 5.285961e-50 | -8.615850e-47 |
| Msa0450140 | Msa0679100 | 0.801676 | 8.046366e-49 | -8.615850e-47 |
| Msa0450140 | Msa0689500 | 0.821496 | 3.915141e-53 | -8.615850e-47 |
| Msa0450140 | Msa0694990 | 0.804839 | 1.781819e-49 | -8.615850e-47 |
| Msa0450140 | Msa0695130 | 0.833676 | 4.651168e-56 | -8.615850e-47 |
| Msa0450140 | Msa0726080 | 0.811635 | 6.342620e-51 | -8.615850e-47 |
| Msa0450140 | Msa0744100 | 0.807912 | 4.008511e-50 | -8.615850e-47 |
| Msa0450140 | Msa0748430 | 0.800279 | 1.552705e-48 | -8.615850e-47 |
| Msa0450140 | Msa0756930 | 0.820388 | 7.040920e-53 | -8.615850e-47 |
| Msa0450140 | Msa0765510 | 0.800151 | 1.648928e-48 | -8.615850e-47 |
| Msa0450140 | Msa0822170 | 0.804566 | 2.030988e-49 | -8.615850e-47 |
| Msa0450140 | Msa0822180 | 0.803909 | 2.783425e-49 | -8.615850e-47 |
| Msa0450140 | Msa0825270 | 0.810182 | 1.308648e-50 | -8.615850e-47 |
| Msa0450140 | Msa0826500 | 0.804059 | 2.590526e-49 | -8.615850e-47 |
| Msa0450140 | Msa0829220 | 0.801319 | 9.523358e-49 | -8.615850e-47 |
| Msa0450140 | Msa0833190 | -0.823745 | 1.173621e-53 | -8.615850e-47 |
| Msa0450140 | Msa0836500 | 0.815222 | 1.032319e-51 | -8.615850e-47 |
| Msa0450140 | Msa0844280 | 0.806579 | 7.681275e-50 | -8.615850e-47 |
| Msa0450140 | Msa0846230 | 0.808142 | 3.582194e-50 | -8.615850e-47 |
| Msa0450140 | Msa0853950 | 0.807379 | 5.201088e-50 | -8.615850e-47 |
| Msa0450140 | Msa0923780 | 0.807629 | 4.604428e-50 | -8.615850e-47 |
| Msa0450140 | Msa0943170 | 0.801918 | 7.177693e-49 | -8.615850e-47 |
| Msa0450140 | Msa0944200 | 0.812614 | 3.879664e-51 | -8.615850e-47 |
| Msa0450140 | Msa0963020 | 0.804313 | 2.293350e-49 | -8.615850e-47 |
| Msa0450140 | Msa0980540 | 0.814637 | 1.392161e-51 | -8.615850e-47 |
| Msa0450140 | Msa0980940 | 0.832681 | 8.229482e-56 | -8.615850e-47 |
| Msa0450140 | Msa0994290 | 0.818150 | 2.277104e-52 | -8.615850e-47 |
| Msa0450140 | Msa1027250 | 0.847352 | 1.220694e-59 | -8.615850e-47 |
| Msa0450140 | Msa1027300 | 0.850571 | 1.558278e-60 | -8.615850e-47 |
| Msa0450140 | Msa1027360 | 0.819928 | 8.977521e-53 | -8.615850e-47 |
| Msa0450140 | Msa1068100 | 0.807776 | 4.284797e-50 | -8.615850e-47 |
| Msa0450140 | Msa1071660 | 0.808557 | 2.921610e-50 | -8.615850e-47 |
| Msa0450140 | Msa1127590 | 0.802711 | 4.928511e-49 | -8.615850e-47 |
| Msa0450140 | Msa1157740 | 0.819479 | 1.136884e-52 | -8.615850e-47 |
| Msa0450140 | Msa1158770 | 0.822271 | 2.590463e-53 | -8.615850e-47 |
| Msa0450140 | Msa1171830 | 0.804426 | 2.172777e-49 | -8.615850e-47 |
| Msa0450140 | Msa1178060 | 0.800271 | 1.558219e-48 | -8.615850e-47 |
| Msa0450140 | Msa1179980 | 0.804087 | 2.556063e-49 | -8.615850e-47 |
| Msa0450140 | Msa1202580 | 0.832109 | 1.140370e-55 | -8.615850e-47 |
| Msa0450140 | Msa1206650 | 0.831048 | 2.082057e-55 | -8.615850e-47 |
| Msa0450140 | Msa1207730 | 0.802257 | 6.114054e-49 | -8.615850e-47 |
| Msa0450140 | Msa1211830 | 0.800223 | 1.594060e-48 | -8.615850e-47 |
| Msa0450140 | Msa1270620 | 0.800132 | 1.663778e-48 | -8.615850e-47 |
| Msa0450140 | Msa1270690 | 0.805403 | 1.357310e-49 | -8.615850e-47 |
| Msa0450140 | Msa1276970 | 0.826929 | 2.071047e-54 | -8.615850e-47 |
| Msa0450140 | Msa1278900 | 0.805901 | 1.066975e-49 | -8.615850e-47 |
| Msa0450140 | Msa1306390 | 0.811474 | 6.875164e-51 | -8.615850e-47 |
| Msa0450140 | Msa1307180 | 0.803796 | 2.938653e-49 | -8.615850e-47 |
| Msa0450140 | Msa1344310 | 0.841708 | 4.033465e-58 | -8.615850e-47 |
| Msa0450140 | Msa1356610 | 0.810883 | 9.234475e-51 | -8.615850e-47 |
| Msa0450140 | Msa1360980 | 0.813410 | 2.596540e-51 | -8.615850e-47 |
| Msa0450140 | Msa1362420 | 0.801779 | 7.666387e-49 | -8.615850e-47 |
| Msa0450140 | Msa1370590 | 0.811265 | 7.634304e-51 | -8.615850e-47 |
| Msa0450140 | Msa1383530 | 0.801078 | 1.066679e-48 | -8.615850e-47 |
| Msa0450140 | Msa1384100 | 0.808994 | 2.355336e-50 | -8.615850e-47 |
| Msa0450140 | Msa1396870 | 0.812522 | 4.064942e-51 | -8.615850e-47 |
| Msa0450140 | Msa1407190 | 0.808944 | 2.415047e-50 | -8.615850e-47 |
| Msa0450140 | Msa1411950 | 0.830799 | 2.395602e-55 | -8.615850e-47 |
| Msa0450140 | Msa1432480 | 0.806003 | 1.015816e-49 | -8.615850e-47 |
| Msa0450140 | Msa1435770 | 0.824831 | 6.520233e-54 | -8.615850e-47 |
| Msa0450140 | Msa1444120 | 0.805249 | 1.462291e-49 | -8.615850e-47 |
| Msa0450140 | Msa1445940 | 0.807132 | 5.869400e-50 | -8.615850e-47 |
| Msa0244980 | Msa0450140 | 0.859468 | 4.052182e-63 | -8.615850e-47 |
| Msa0245580 | Msa0450140 | 0.804187 | 2.436525e-49 | -8.615850e-47 |
| Msa0247060 | Msa0450140 | 0.816794 | 4.601020e-52 | -8.615850e-47 |
| Msa0249580 | Msa0450140 | 0.824344 | 8.492090e-54 | -8.615850e-47 |
| Msa0269470 | Msa0450140 | 0.813337 | 2.693530e-51 | -8.615850e-47 |
| Msa0275360 | Msa0450140 | 0.821041 | 4.984792e-53 | -8.615850e-47 |
| Msa0283420 | Msa0450140 | 0.826620 | 2.455245e-54 | -8.615850e-47 |
| Msa0296790 | Msa0450140 | 0.800477 | 1.415092e-48 | -8.615850e-47 |
| Msa0322900 | Msa0450140 | 0.808227 | 3.435745e-50 | -8.615850e-47 |
| Msa0324240 | Msa0450140 | 0.804099 | 2.541750e-49 | -8.615850e-47 |
| Msa0339910 | Msa0450140 | 0.814481 | 1.507587e-51 | -8.615850e-47 |
| Msa0343190 | Msa0450140 | 0.819513 | 1.116574e-52 | -8.615850e-47 |
| Msa0363060 | Msa0450140 | 0.827372 | 1.622820e-54 | -8.615850e-47 |
| Msa0363640 | Msa0450140 | 0.804749 | 1.860194e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450140 | MtrunA17_Chr3g0118301 | 66.667 | 165 | 38 | 2 | 1 | 148 | 1 | 165 | 2.17e-66 | 199 |
| Msa0450140 | MtrunA17_Chr1g0192701 | 52.349 | 149 | 39 | 3 | 17 | 148 | 1 | 134 | 5.42e-38 | 126 |
| Msa0450140 | MtrunA17_Chr2g0312071 | 75.000 | 56 | 8 | 1 | 93 | 148 | 35 | 84 | 1.08e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450140 | AT1G34350.1 | 50.307 | 163 | 64 | 2 | 3 | 148 | 1 | 163 | 3.69e-49 | 155 |
| Msa0450140 | AT1G34350.2 | 45.213 | 188 | 61 | 4 | 3 | 148 | 1 | 188 | 1.28e-45 | 147 |
Find 38 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCTAAATTTACACTTAA+TGG | 0.143487 | 3_3:-35491154 | None:intergenic |
| TGAGAGACTTAATAGTATTC+TGG | 0.230596 | 3_3:-35491802 | Msa0450140:intron |
| CTGAAAGTTGGTATTCTTCC+TGG | 0.303474 | 3_3:+35492865 | None:intergenic |
| GTTTCAGGAACCTTGGCTAC+TGG | 0.315298 | 3_3:-35492933 | Msa0450140:intron |
| AATAGTATTCTGGGGAAAAC+TGG | 0.337286 | 3_3:-35491792 | Msa0450140:intron |
| GTAATTAAAGAAACTTTGTT+TGG | 0.355871 | 3_3:+35491328 | None:intergenic |
| GAGTATTTATGTCAGTTCTT+TGG | 0.365618 | 3_3:-35491732 | Msa0450140:CDS |
| TTTATGTCAGTTCTTTGGTC+TGG | 0.387486 | 3_3:-35491727 | Msa0450140:CDS |
| TGCATTCGCTATGATAATCT+TGG | 0.397468 | 3_3:-35491695 | Msa0450140:intron |
| TTTCAGGAACCTTGGCTACT+GGG | 0.415351 | 3_3:-35492932 | Msa0450140:intron |
| TATGTTACTTGATTGTTAAG+TGG | 0.415739 | 3_3:-35491532 | Msa0450140:CDS |
| CTGATGCATGGGAAAATTCT+TGG | 0.423972 | 3_3:+35491306 | None:intergenic |
| GAGAGACTTAATAGTATTCT+GGG | 0.439923 | 3_3:-35491801 | Msa0450140:intron |
| TAATTAAAGAAACTTTGTTT+GGG | 0.447933 | 3_3:+35491329 | None:intergenic |
| AGAAAGACAACTCATTTGTA+TGG | 0.466408 | 3_3:+35491360 | None:intergenic |
| AATGCTACGTACACGTCAAA+AGG | 0.482328 | 3_3:+35492831 | None:intergenic |
| AGGAATAGTTGATCTATAGT+TGG | 0.488648 | 3_3:-35491463 | Msa0450140:exon |
| TTGTTAAGTAAGTGTTCTAA+TGG | 0.489799 | 3_3:-35491214 | Msa0450140:three_prime_UTR |
| CTTAACAATCAAGTAACATA+AGG | 0.491135 | 3_3:+35491535 | None:intergenic |
| TTCTTGCGATTATTGTCTCC+AGG | 0.499806 | 3_3:-35492883 | Msa0450140:CDS |
| GAACAAGCACATCTGAAAGT+TGG | 0.517575 | 3_3:+35492853 | None:intergenic |
| TTAAAGAAACTTTGTTTGGG+AGG | 0.520741 | 3_3:+35491332 | None:intergenic |
| CGATGAACTGAAATCTGCTA+TGG | 0.524498 | 3_3:-35493813 | Msa0450140:CDS |
| CATGTGATTGCAACAACTCA+TGG | 0.532805 | 3_3:+35491384 | None:intergenic |
| AACAGAATGAACTGATGCAT+GGG | 0.546519 | 3_3:+35491295 | None:intergenic |
| TTAAGTAAGTGTTCTAATGG+TGG | 0.564372 | 3_3:-35491211 | Msa0450140:three_prime_UTR |
| AAGGGCTGCTCGTAGTAAGC+AGG | 0.566315 | 3_3:-35491483 | Msa0450140:CDS |
| AAACAGAATGAACTGATGCA+TGG | 0.574496 | 3_3:+35491294 | None:intergenic |
| CTGAACTAAGACATCGTGCA+AGG | 0.578215 | 3_3:-35491502 | Msa0450140:CDS |
| GTTAACAATCCCAGTAGCCA+AGG | 0.583367 | 3_3:+35492923 | None:intergenic |
| ATCATAGCGAATGCAAGAAG+AGG | 0.591910 | 3_3:+35491703 | None:intergenic |
| ACTGACATAAATACTCCACT+TGG | 0.602088 | 3_3:+35491739 | None:intergenic |
| TCGCAAGAAGCAATAGAACA+TGG | 0.614827 | 3_3:+35492897 | None:intergenic |
| TGAACTGAAATCTGCTATGG+AGG | 0.630102 | 3_3:-35493810 | Msa0450140:CDS |
| TGAACTAAGACATCGTGCAA+GGG | 0.640138 | 3_3:-35491501 | Msa0450140:CDS |
| CATGAGTTGTTGCAATCACA+TGG | 0.651876 | 3_3:-35491383 | Msa0450140:three_prime_UTR |
| TTTCAGTTCATCGATCGACA+TGG | 0.652553 | 3_3:+35493823 | None:intergenic |
| AGAGACTTAATAGTATTCTG+GGG | 0.696048 | 3_3:-35491800 | Msa0450140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTATCTATTTATTT+TGG | - | chr3_3:35491418-35491437 | Msa0450140:three_prime_UTR | 10.0% |
| !!! | TTTGATATAATATGATTTTA+TGG | - | chr3_3:35491889-35491908 | Msa0450140:intron | 10.0% |
| !!! | AAATTTCTAAAATGAGAAAA+TGG | + | chr3_3:35491959-35491978 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTTTGTTTC+AGG | - | chr3_3:35492030-35492049 | Msa0450140:intron | 15.0% |
| !! | ACATTCCATAAAATTAAAAA+AGG | + | chr3_3:35492173-35492192 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAATAAACTATAA+AGG | - | chr3_3:35492193-35492212 | Msa0450140:intron | 15.0% |
| !!! | TAAATATTTCTTTTAGAATG+AGG | - | chr3_3:35492619-35492638 | Msa0450140:intron | 15.0% |
| !! | TAAGATATAATTGAATTGAT+AGG | - | chr3_3:35492910-35492929 | Msa0450140:CDS | 15.0% |
| !! | AAGATATAATTGAATTGATA+GGG | - | chr3_3:35492911-35492930 | Msa0450140:CDS | 15.0% |
| !! | TCATATTGAATATTAACTAT+CGG | - | chr3_3:35493353-35493372 | Msa0450140:intron | 15.0% |
| !!! | TAATTAAAGAAACTTTGTTT+GGG | + | chr3_3:35493652-35493671 | None:intergenic | 15.0% |
| !! | AAAAATAAGTAAATCCAAAC+AGG | + | chr3_3:35491608-35491627 | None:intergenic | 20.0% |
| !!! | TTTATGGATCATATTACTTT+TGG | - | chr3_3:35491905-35491924 | Msa0450140:intron | 20.0% |
| !!! | GCATTCCTTTTTTAATTTTA+TGG | - | chr3_3:35492165-35492184 | Msa0450140:intron | 20.0% |
| !! | ATTATGTAGTCTATTCAATT+TGG | - | chr3_3:35492374-35492393 | Msa0450140:intron | 20.0% |
| !!! | TATTCAATTTGGTAACATTA+TGG | - | chr3_3:35492385-35492404 | Msa0450140:intron | 20.0% |
| !!! | TTCACTCTTTTGAAAATTTT+GGG | + | chr3_3:35492557-35492576 | None:intergenic | 20.0% |
| !!! | ATTCACTCTTTTGAAAATTT+TGG | + | chr3_3:35492558-35492577 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGAGTGAATATA+TGG | - | chr3_3:35492561-35492580 | Msa0450140:intron | 20.0% |
| !! | GTAATTAAAGAAACTTTGTT+TGG | + | chr3_3:35493653-35493672 | None:intergenic | 20.0% |
| ! | CGAAGCAATAAAAAAGAATA+AGG | + | chr3_3:35491368-35491387 | None:intergenic | 25.0% |
| !! | TTTTATTGCTTCGTCAATTA+TGG | - | chr3_3:35491375-35491394 | Msa0450140:three_prime_UTR | 25.0% |
| ! | TTATGGAGTTTAATTGAATC+TGG | - | chr3_3:35491392-35491411 | Msa0450140:three_prime_UTR | 25.0% |
| !!! | TTGTATAAGTTGTTTTGCAT+AGG | - | chr3_3:35491698-35491717 | Msa0450140:CDS | 25.0% |
| ! | AGAAAGTTAAGCTACATTAT+TGG | + | chr3_3:35493120-35493139 | None:intergenic | 25.0% |
| ! | ATAATGTAGCTTAACTTTCT+TGG | - | chr3_3:35493120-35493139 | Msa0450140:intron | 25.0% |
| ! | CTTAACAATCAAGTAACATA+AGG | + | chr3_3:35493446-35493465 | None:intergenic | 25.0% |
| !! | TATGTTACTTGATTGTTAAG+TGG | - | chr3_3:35493446-35493465 | Msa0450140:intron | 25.0% |
| !!! | GATTTTGATGGATTAAACTA+AGG | - | chr3_3:35493562-35493581 | Msa0450140:intron | 25.0% |
| ! | TTGTTAAGTAAGTGTTCTAA+TGG | - | chr3_3:35493764-35493783 | Msa0450140:CDS | 25.0% |
| CCTAAAAAGTTATCTTTAGC+AGG | + | chr3_3:35491259-35491278 | None:intergenic | 30.0% | |
| ! | CCTGCTAAAGATAACTTTTT+AGG | - | chr3_3:35491256-35491275 | Msa0450140:three_prime_UTR | 30.0% |
| ! | TCTTTCATGCTATTGATTGA+AGG | - | chr3_3:35491281-35491300 | Msa0450140:three_prime_UTR | 30.0% |
| ! | TGTCATGTTTTGTACTTGTT+TGG | - | chr3_3:35491485-35491504 | Msa0450140:CDS | 30.0% |
| ! | ATGCGAGTTGTATATTGATT+CGG | - | chr3_3:35491563-35491582 | Msa0450140:intron | 30.0% |
| TTCGGTACTAAATTGAACTT+AGG | - | chr3_3:35491581-35491600 | Msa0450140:intron | 30.0% | |
| TCGGTACTAAATTGAACTTA+GGG | - | chr3_3:35491582-35491601 | Msa0450140:intron | 30.0% | |
| ACAAATAAATAAGCTTGTCG+AGG | + | chr3_3:35491682-35491701 | None:intergenic | 30.0% | |
| ! | AACCATTGAGTTGTCAAATA+GGG | - | chr3_3:35491839-35491858 | Msa0450140:intron | 30.0% |
| GACAATATTAGTAAGTTTGC+AGG | + | chr3_3:35491996-35492015 | None:intergenic | 30.0% | |
| !! | GTGATAAGTTGATTATCATG+GGG | + | chr3_3:35492284-35492303 | None:intergenic | 30.0% |
| !! | GGTGATAAGTTGATTATCAT+GGG | + | chr3_3:35492285-35492304 | None:intergenic | 30.0% |
| AATGCAGAAAATTAAAGGCA+GGG | + | chr3_3:35492306-35492325 | None:intergenic | 30.0% | |
| !! | TGCCTTTAATTTTCTGCATT+GGG | - | chr3_3:35492306-35492325 | Msa0450140:intron | 30.0% |
| TCAAAGCATGATAGGATAAA+TGG | + | chr3_3:35492513-35492532 | None:intergenic | 30.0% | |
| TTTATCCTATCATGCTTTGA+TGG | - | chr3_3:35492513-35492532 | Msa0450140:intron | 30.0% | |
| AGTTGAAGTTTGAATACCTA+TGG | - | chr3_3:35492773-35492792 | Msa0450140:intron | 30.0% | |
| TGTCTATCTGATACAAGTTT+AGG | + | chr3_3:35492846-35492865 | None:intergenic | 30.0% | |
| GATGTAAGCACTAAAAACAT+GGG | + | chr3_3:35492888-35492907 | None:intergenic | 30.0% | |
| AGATGTAAGCACTAAAAACA+TGG | + | chr3_3:35492889-35492908 | None:intergenic | 30.0% | |
| ATTGAATTGATAGGGAAGAA+TGG | - | chr3_3:35492919-35492938 | Msa0450140:CDS | 30.0% | |
| ! | TCATTTTCCATGCACATATT+TGG | - | chr3_3:35493025-35493044 | Msa0450140:intron | 30.0% |
| GAAAACATAAAACTGACATC+AGG | + | chr3_3:35493068-35493087 | None:intergenic | 30.0% | |
| TGAGAGACTTAATAGTATTC+TGG | - | chr3_3:35493176-35493195 | Msa0450140:intron | 30.0% | |
| GAGAGACTTAATAGTATTCT+GGG | - | chr3_3:35493177-35493196 | Msa0450140:intron | 30.0% | |
| AGAGACTTAATAGTATTCTG+GGG | - | chr3_3:35493178-35493197 | Msa0450140:intron | 30.0% | |
| !!! | CAAAACTATTTTGATCCAAG+TGG | - | chr3_3:35493224-35493243 | Msa0450140:intron | 30.0% |
| GAGTATTTATGTCAGTTCTT+TGG | - | chr3_3:35493246-35493265 | Msa0450140:intron | 30.0% | |
| AGGAATAGTTGATCTATAGT+TGG | - | chr3_3:35493515-35493534 | Msa0450140:intron | 30.0% | |
| ! | TGAATGTAGTCAGATTTTGA+TGG | - | chr3_3:35493550-35493569 | Msa0450140:intron | 30.0% |
| AGAAAGACAACTCATTTGTA+TGG | + | chr3_3:35493621-35493640 | None:intergenic | 30.0% | |
| ! | TTAAAGAAACTTTGTTTGGG+AGG | + | chr3_3:35493649-35493668 | None:intergenic | 30.0% |
| TTAAGTAAGTGTTCTAATGG+TGG | - | chr3_3:35493767-35493786 | Msa0450140:CDS | 30.0% | |
| ATGCTAAAAGAGAAGGTTTG+CGG | + | chr3_3:35491333-35491352 | None:intergenic | 35.0% | |
| GAGAGAAATGCTAAAAGAGA+AGG | + | chr3_3:35491340-35491359 | None:intergenic | 35.0% | |
| ! | CTGGTTGGTACAAAAGTTTA+GGG | + | chr3_3:35491817-35491836 | None:intergenic | 35.0% |
| ! | CAACCATTGAGTTGTCAAAT+AGG | - | chr3_3:35491838-35491857 | Msa0450140:intron | 35.0% |
| ! | ACCATTGAGTTGTCAAATAG+GGG | - | chr3_3:35491840-35491859 | Msa0450140:intron | 35.0% |
| !! | TGTTTTTGTTTCAGGAACCT+TGG | - | chr3_3:35492038-35492057 | Msa0450140:intron | 35.0% |
| !! | TAAGTTGATTATCATGGGGA+AGG | + | chr3_3:35492280-35492299 | None:intergenic | 35.0% |
| !! | GGGTGATAAGTTGATTATCA+TGG | + | chr3_3:35492286-35492305 | None:intergenic | 35.0% |
| CAATGCAGAAAATTAAAGGC+AGG | + | chr3_3:35492307-35492326 | None:intergenic | 35.0% | |
| !! | CTGCCTTTAATTTTCTGCAT+TGG | - | chr3_3:35492305-35492324 | Msa0450140:intron | 35.0% |
| CACCCAATGCAGAAAATTAA+AGG | + | chr3_3:35492311-35492330 | None:intergenic | 35.0% | |
| CAATCTTTATCCCACTAAGT+GGG | + | chr3_3:35492434-35492453 | None:intergenic | 35.0% | |
| TCAATCTTTATCCCACTAAG+TGG | + | chr3_3:35492435-35492454 | None:intergenic | 35.0% | |
| TTGCTGTAGTCTATTCTGTT+TGG | - | chr3_3:35492464-35492483 | Msa0450140:intron | 35.0% | |
| TATTATCTTAGCCACTGATC+AGG | - | chr3_3:35492652-35492671 | Msa0450140:intron | 35.0% | |
| CTAGTTCGATAGCTATTTAG+AGG | - | chr3_3:35492698-35492717 | Msa0450140:intron | 35.0% | |
| ! | CAGGAAAGAATACAGTGTTT+TGG | - | chr3_3:35492743-35492762 | Msa0450140:intron | 35.0% |
| GTATATCTTCTCTACACCAT+AGG | + | chr3_3:35492792-35492811 | None:intergenic | 35.0% | |
| AATTGATAGGGAAGAATGGA+TGG | - | chr3_3:35492923-35492942 | Msa0450140:CDS | 35.0% | |
| TGTGTGCATCTTATCTAAAC+CGG | + | chr3_3:35492979-35492998 | None:intergenic | 35.0% | |
| GTAAACACCAAATATGTGCA+TGG | + | chr3_3:35493035-35493054 | None:intergenic | 35.0% | |
| !! | TCTTGGAAATTGTTTTGCAG+TGG | - | chr3_3:35493137-35493156 | Msa0450140:intron | 35.0% |
| ! | AATAGTATTCTGGGGAAAAC+TGG | - | chr3_3:35493186-35493205 | Msa0450140:intron | 35.0% |
| ACTGACATAAATACTCCACT+TGG | + | chr3_3:35493242-35493261 | None:intergenic | 35.0% | |
| TTTATGTCAGTTCTTTGGTC+TGG | - | chr3_3:35493251-35493270 | Msa0450140:intron | 35.0% | |
| TGCATTCGCTATGATAATCT+TGG | - | chr3_3:35493283-35493302 | Msa0450140:intron | 35.0% | |
| TTCGCTATGATAATCTTGGT+TGG | - | chr3_3:35493287-35493306 | Msa0450140:intron | 35.0% | |
| CATAATGGTTGTGACATAAG+GGG | + | chr3_3:35493318-35493337 | None:intergenic | 35.0% | |
| CCATAATGGTTGTGACATAA+GGG | + | chr3_3:35493319-35493338 | None:intergenic | 35.0% | |
| ACCATAATGGTTGTGACATA+AGG | + | chr3_3:35493320-35493339 | None:intergenic | 35.0% | |
| AACAGAATGAACTGATGCAT+GGG | + | chr3_3:35493686-35493705 | None:intergenic | 35.0% | |
| AAACAGAATGAACTGATGCA+TGG | + | chr3_3:35493687-35493706 | None:intergenic | 35.0% | |
| TGTAACTCTTCCAAAAACGA+AGG | - | chr3_3:35493708-35493727 | Msa0450140:intron | 35.0% | |
| ! | TACAAGTGATCCTTCGTTTT+TGG | + | chr3_3:35493721-35493740 | None:intergenic | 35.0% |
| CGATGAACTGAAATCTGCTA+TGG | - | chr3_3:35491165-35491184 | Msa0450140:three_prime_UTR | 40.0% | |
| TGAACTGAAATCTGCTATGG+AGG | - | chr3_3:35491168-35491187 | Msa0450140:three_prime_UTR | 40.0% | |
| AATTGAACTTAGGGCCTGTT+TGG | - | chr3_3:35491591-35491610 | Msa0450140:intron | 40.0% | |
| ! | GTATTAATCAGGGGCTTGTT+TGG | + | chr3_3:35491741-35491760 | None:intergenic | 40.0% |
| CGCGGATTTGTATTAATCAG+GGG | + | chr3_3:35491750-35491769 | None:intergenic | 40.0% | |
| CCGCGGATTTGTATTAATCA+GGG | + | chr3_3:35491751-35491770 | None:intergenic | 40.0% | |
| CCCTGATTAATACAAATCCG+CGG | - | chr3_3:35491748-35491767 | Msa0450140:CDS | 40.0% | |
| ACCGCGGATTTGTATTAATC+AGG | + | chr3_3:35491752-35491771 | None:intergenic | 40.0% | |
| ! | CCTGGTTGGTACAAAAGTTT+AGG | + | chr3_3:35491818-35491837 | None:intergenic | 40.0% |
| ! | CCTAAACTTTTGTACCAACC+AGG | - | chr3_3:35491815-35491834 | Msa0450140:intron | 40.0% |
| AAACATAAACTCGCGCTTCA+GGG | + | chr3_3:35491866-35491885 | None:intergenic | 40.0% | |
| TCGCAAGAAGCAATAGAACA+TGG | + | chr3_3:35492084-35492103 | None:intergenic | 40.0% | |
| TTCTTGCGATTATTGTCTCC+AGG | - | chr3_3:35492095-35492114 | Msa0450140:intron | 40.0% | |
| !! | CTGAAAGTTGGTATTCTTCC+TGG | + | chr3_3:35492116-35492135 | None:intergenic | 40.0% |
| GAACAAGCACATCTGAAAGT+TGG | + | chr3_3:35492128-35492147 | None:intergenic | 40.0% | |
| AATGCTACGTACACGTCAAA+AGG | + | chr3_3:35492150-35492169 | None:intergenic | 40.0% | |
| CTTCAAACAGAAGTGAAGTG+AGG | + | chr3_3:35492251-35492270 | None:intergenic | 40.0% | |
| TGCAACCATCAAAGCATGAT+AGG | + | chr3_3:35492521-35492540 | None:intergenic | 40.0% | |
| GATAGCTATTTAGAGGAGAG+TGG | - | chr3_3:35492705-35492724 | Msa0450140:intron | 40.0% | |
| GTGGACAGGTTATAAATGAC+AGG | - | chr3_3:35492724-35492743 | Msa0450140:intron | 40.0% | |
| TAAGACGCAAGAATGCACAA+TGG | + | chr3_3:35492821-35492840 | None:intergenic | 40.0% | |
| AAGCACTAAAAACATGGGCA+TGG | + | chr3_3:35492883-35492902 | None:intergenic | 40.0% | |
| ! | TAGGGAAGAATGGATGGTTT+TGG | - | chr3_3:35492929-35492948 | Msa0450140:CDS | 40.0% |
| ! | AGGGAAGAATGGATGGTTTT+GGG | - | chr3_3:35492930-35492949 | Msa0450140:intron | 40.0% |
| !!! | GAATGGATGGTTTTGGGTTT+TGG | - | chr3_3:35492936-35492955 | Msa0450140:intron | 40.0% |
| GTGTGCATCTTATCTAAACC+GGG | + | chr3_3:35492978-35492997 | None:intergenic | 40.0% | |
| CAGACACAAGAATGCACAAT+GGG | + | chr3_3:35493004-35493023 | None:intergenic | 40.0% | |
| ACAGACACAAGAATGCACAA+TGG | + | chr3_3:35493005-35493024 | None:intergenic | 40.0% | |
| ATCATAGCGAATGCAAGAAG+AGG | + | chr3_3:35493278-35493297 | None:intergenic | 40.0% | |
| CCCTTATGTCACAACCATTA+TGG | - | chr3_3:35493316-35493335 | Msa0450140:intron | 40.0% | |
| TGTCACAACCATTATGGTGA+CGG | - | chr3_3:35493322-35493341 | Msa0450140:intron | 40.0% | |
| AAAGATGACCGTCACCATAA+TGG | + | chr3_3:35493333-35493352 | None:intergenic | 40.0% | |
| TGAACTAAGACATCGTGCAA+GGG | - | chr3_3:35493477-35493496 | Msa0450140:intron | 40.0% | |
| CATGTGATTGCAACAACTCA+TGG | + | chr3_3:35493597-35493616 | None:intergenic | 40.0% | |
| CATGAGTTGTTGCAATCACA+TGG | - | chr3_3:35493595-35493614 | Msa0450140:intron | 40.0% | |
| CTGATGCATGGGAAAATTCT+TGG | + | chr3_3:35493675-35493694 | None:intergenic | 40.0% | |
| GAAATTGGAGGGAGAAGAGT+AGG | + | chr3_3:35491309-35491328 | None:intergenic | 45.0% | |
| ! | ATCCGCGGTGTGTATCTTTT+TGG | - | chr3_3:35491763-35491782 | Msa0450140:CDS | 45.0% |
| GTCCAAAAAGATACACACCG+CGG | + | chr3_3:35491768-35491787 | None:intergenic | 45.0% | |
| TTGACAACTCAATGGTTGCC+TGG | + | chr3_3:35491836-35491855 | None:intergenic | 45.0% | |
| GCCCCTATTTGACAACTCAA+TGG | + | chr3_3:35491844-35491863 | None:intergenic | 45.0% | |
| CAAACATAAACTCGCGCTTC+AGG | + | chr3_3:35491867-35491886 | None:intergenic | 45.0% | |
| TTTCAGGAACCTTGGCTACT+GGG | - | chr3_3:35492046-35492065 | Msa0450140:intron | 45.0% | |
| GTTAACAATCCCAGTAGCCA+AGG | + | chr3_3:35492058-35492077 | None:intergenic | 45.0% | |
| GCATTGGGTGAAATACTGAG+CGG | - | chr3_3:35492321-35492340 | Msa0450140:intron | 45.0% | |
| AGCGGCGATAACGTGATATT+TGG | - | chr3_3:35492339-35492358 | Msa0450140:intron | 45.0% | |
| CTTTATCCCACTAAGTGGGT+CGG | + | chr3_3:35492430-35492449 | None:intergenic | 45.0% | |
| TATCTCCATGACCTGATCAG+TGG | + | chr3_3:35492666-35492685 | None:intergenic | 45.0% | |
| CTATTTAGAGGAGAGTGGAC+AGG | - | chr3_3:35492710-35492729 | Msa0450140:intron | 45.0% | |
| !!! | GATGGTTTTGGGTTTTGGAG+TGG | - | chr3_3:35492941-35492960 | Msa0450140:intron | 45.0% |
| !!! | TGGGTTTTGGAGTGGAACTT+TGG | - | chr3_3:35492949-35492968 | Msa0450140:intron | 45.0% |
| !! | GGAAATTGTTTTGCAGTGGC+TGG | - | chr3_3:35493141-35493160 | Msa0450140:intron | 45.0% |
| CTGAACTAAGACATCGTGCA+AGG | - | chr3_3:35493476-35493495 | Msa0450140:intron | 45.0% | |
| AGGTTTGCGGCGAAATTGGA+GGG | + | chr3_3:35491320-35491339 | None:intergenic | 50.0% | |
| AAGGTTTGCGGCGAAATTGG+AGG | + | chr3_3:35491321-35491340 | None:intergenic | 50.0% | |
| GAGAAGGTTTGCGGCGAAAT+TGG | + | chr3_3:35491324-35491343 | None:intergenic | 50.0% | |
| CAACTCAATGGTTGCCTGGT+TGG | + | chr3_3:35491832-35491851 | None:intergenic | 50.0% | |
| GTTTCAGGAACCTTGGCTAC+TGG | - | chr3_3:35492045-35492064 | Msa0450140:intron | 50.0% | |
| ATGTAGCCGACCCACTTAGT+GGG | - | chr3_3:35492421-35492440 | Msa0450140:intron | 50.0% | |
| CTTAGCCACTGATCAGGTCA+TGG | - | chr3_3:35492658-35492677 | Msa0450140:intron | 50.0% | |
| GGAGTGGAACTTTGGATACC+CGG | - | chr3_3:35492957-35492976 | Msa0450140:intron | 50.0% | |
| CACTAAGTGGGTCGGCTACA+TGG | + | chr3_3:35492422-35492441 | None:intergenic | 55.0% | |
| CATGTAGCCGACCCACTTAG+TGG | - | chr3_3:35492420-35492439 | Msa0450140:intron | 55.0% | |
| AAGGGCTGCTCGTAGTAAGC+AGG | - | chr3_3:35493495-35493514 | Msa0450140:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 35491157 | 35493843 | 35491157 | ID=Msa0450140;Name=Msa0450140 |
| chr3_3 | mRNA | 35491157 | 35493843 | 35491157 | ID=Msa0450140-mRNA-1;Parent=Msa0450140;Name=Msa0450140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.25|0.2|1|0.25|0.4|5|321|148 |
| chr3_3 | exon | 35491157 | 35491573 | 35491157 | ID=Msa0450140-mRNA-1:exon:6329;Parent=Msa0450140-mRNA-1 |
| chr3_3 | exon | 35491696 | 35491809 | 35491696 | ID=Msa0450140-mRNA-1:exon:6328;Parent=Msa0450140-mRNA-1 |
| chr3_3 | exon | 35491838 | 35491843 | 35491838 | ID=Msa0450140-mRNA-1:exon:6327;Parent=Msa0450140-mRNA-1 |
| chr3_3 | exon | 35492839 | 35492948 | 35492839 | ID=Msa0450140-mRNA-1:exon:6326;Parent=Msa0450140-mRNA-1 |
| chr3_3 | exon | 35493723 | 35493843 | 35493723 | ID=Msa0450140-mRNA-1:exon:6325;Parent=Msa0450140-mRNA-1 |
| chr3_3 | CDS | 35493723 | 35493843 | 35493723 | ID=Msa0450140-mRNA-1:cds;Parent=Msa0450140-mRNA-1 |
| chr3_3 | CDS | 35492839 | 35492948 | 35492839 | ID=Msa0450140-mRNA-1:cds;Parent=Msa0450140-mRNA-1 |
| chr3_3 | CDS | 35491838 | 35491843 | 35491838 | ID=Msa0450140-mRNA-1:cds;Parent=Msa0450140-mRNA-1 |
| chr3_3 | CDS | 35491696 | 35491809 | 35491696 | ID=Msa0450140-mRNA-1:cds;Parent=Msa0450140-mRNA-1 |
| chr3_3 | CDS | 35491478 | 35491573 | 35491478 | ID=Msa0450140-mRNA-1:cds;Parent=Msa0450140-mRNA-1 |
| chr3_3 | three_prime_UTR | 35491157 | 35491477 | 35491157 | ID=Msa0450140-mRNA-1:three_prime_utr;Parent=Msa0450140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
