AlfalfaGEDB | Msa1163670

M. sativa cultivar zhongmu-4 / Msa1163670

KEGG: K13944
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163670	XP_013449860.1	98.624	218	3	0	1	218	1	218	9.36e-161	452

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163670	sp\|Q9SLB7\|LBD16_ARATH	55.645	248	77	9	1	218	1	245	2.57e-78	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163670	A0A072U455	98.624	218	3	0	1	218	1	218	4.47e-161	452

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TFs/TRs:

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Gene ID	Type	Classification
Msa1163670	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011510	Msa1163670	0.800999	1.107396e-48	-8.615850e-47
Msa0017710	Msa1163670	0.800866	1.179038e-48	-8.615850e-47
Msa0024280	Msa1163670	0.809455	1.876656e-50	-8.615850e-47
Msa0047560	Msa1163670	-0.803566	3.278575e-49	-8.615850e-47
Msa0048410	Msa1163670	-0.801097	1.057592e-48	-8.615850e-47
Msa0048950	Msa1163670	0.815248	1.018778e-51	-8.615850e-47
Msa0059880	Msa1163670	0.823712	1.195138e-53	-8.615850e-47
Msa0060380	Msa1163670	0.822254	2.613650e-53	-8.615850e-47
Msa0072030	Msa1163670	0.806547	7.801284e-50	-8.615850e-47
Msa0073270	Msa1163670	0.829466	5.066972e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163670	MtrunA17_Chr7g0260971	98.624	218	3	0	1	218	1	218	8.61e-165	452
Msa1163670	MtrunA17_Chr1g0184281	59.649	228	59	10	1	218	1	205	3.04e-79	236
Msa1163670	MtrunA17_Chr7g0261031	74.528	106	27	0	9	114	3	108	4.21e-55	175
Msa1163670	MtrunA17_Chr1g0184271	71.429	105	30	0	14	118	12	116	1.84e-52	169
Msa1163670	MtrunA17_Chr8g0351721	67.857	112	36	0	5	116	9	120	7.19e-51	164
Msa1163670	MtrunA17_Chr8g0351701	55.882	136	60	0	14	149	23	158	6.03e-50	162
Msa1163670	MtrunA17_Chr6g0460951	67.961	103	33	0	13	115	39	141	8.49e-47	154
Msa1163670	MtrunA17_Chr5g0435641	64.000	100	36	0	9	108	2	101	1.50e-45	149
Msa1163670	MtrunA17_Chr7g0245871	66.667	102	34	0	14	115	27	128	3.57e-45	150
Msa1163670	MtrunA17_Chr2g0311601	56.637	113	48	1	5	117	4	115	2.43e-43	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163670	AT2G42430.1	55.645	248	77	9	1	218	1	245	2.62e-79	238
Msa1163670	AT3G58190.1	62.205	127	40	1	14	132	11	137	1.73e-53	171
Msa1163670	AT4G00210.1	57.971	138	58	0	5	142	2	139	7.67e-52	167
Msa1163670	AT3G03760.1	76.699	103	24	0	13	115	50	152	1.06e-51	168
Msa1163670	AT2G45420.1	76.000	100	24	0	17	116	40	139	1.59e-50	165
Msa1163670	AT2G42440.1	61.600	125	40	1	9	125	2	126	1.93e-50	164
Msa1163670	AT2G31310.1	61.404	114	44	0	10	123	3	116	2.74e-50	162
Msa1163670	AT5G06080.1	60.331	121	47	1	12	132	5	124	1.63e-47	154
Msa1163670	AT4G00220.1	69.000	100	31	0	17	116	20	119	1.33e-45	151
Msa1163670	AT2G45410.1	68.000	100	32	0	17	116	19	118	8.58e-45	148

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Find 31 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCACTTAGGATGATG+AGG	0.594424	7_4:+55018148	Msa1163670:CDS
AATAATAATGATCATGACTT+GGG	0.555968	7_4:+55018114	Msa1163670:CDS
AATGGAACTAGCTCTGGAAC+TGG	0.534733	7_4:+55016989	Msa1163670:CDS
AATTGCAAGAAATAGCACTT+AGG	0.616097	7_4:+55018139	Msa1163670:CDS
ACATAGAGAATAATAATCAA+TGG	0.518649	7_4:+55017872	Msa1163670:CDS
AGAGAAGATTTCTCATTCCA+AGG	0.536983	7_4:+55018057	Msa1163670:CDS
AGGAACTTGCATGCTCCACA+AGG	0.611585	7_4:-55017016	None:intergenic
AGTGAACTTTGAGGAGATAT+AGG	0.327596	7_4:-55017964	None:intergenic
ATCAATATGGCTTCTTCAAA+TGG	0.350219	7_4:+55016971	None:intergenic
CAATAATAATGATCATGACT+TGG	0.461238	7_4:+55018113	Msa1163670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTGAATAATCACATGTGT+AGG	-	chr7_4:55017463-55017482	None:intergenic	30.0%
GAGAATAATAATCAATGGAC+AGG	+	chr7_4:55017877-55017896	Msa1163670:CDS	30.0%
AATTGCAAGAAATAGCACTT+AGG	+	chr7_4:55018139-55018158	Msa1163670:CDS	30.0%
ATGTGAATAATCACATGTGT+AGG	-	chr7_4:55017463-55017482	None:intergenic	30.0%
GAGAATAATAATCAATGGAC+AGG	+	chr7_4:55017877-55017896	Msa1163670:CDS	30.0%
AATTGCAAGAAATAGCACTT+AGG	+	chr7_4:55018139-55018158	Msa1163670:CDS	30.0%
TAAGGTGCAAAAATGCAATC+AGG	-	chr7_4:55017058-55017077	None:intergenic	35.0%
TGTTGTCACAATTGCTTATG+AGG	+	chr7_4:55017189-55017208	Msa1163670:CDS	35.0%
TATGTGTACCTGTTGTTGTA+AGG	-	chr7_4:55017266-55017285	None:intergenic	35.0%
AAGAGCCTTAAGAAAAAGAC+AGG	-	chr7_4:55017641-55017660	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	55016977	55018176	55016977	ID=Msa1163670;Name=Msa1163670
chr7_4	mRNA	55016977	55018176	55016977	ID=Msa1163670-mRNA-1;Parent=Msa1163670;Name=Msa1163670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|218
chr7_4	exon	55016977	55017276	55016977	ID=Msa1163670-mRNA-1:exon:16041;Parent=Msa1163670-mRNA-1
chr7_4	exon	55017820	55018176	55017820	ID=Msa1163670-mRNA-1:exon:16042;Parent=Msa1163670-mRNA-1
chr7_4	CDS	55016977	55017276	55016977	ID=Msa1163670-mRNA-1:cds;Parent=Msa1163670-mRNA-1
chr7_4	CDS	55017820	55018176	55017820	ID=Msa1163670-mRNA-1:cds;Parent=Msa1163670-mRNA-1

Gene Sequence

>Msa1163670

ATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTTAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTATATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAATCTCAGCTGTCACATAACATAGAGAATAATAATCAATGGACAGGAAACAATAATAATGTTGCTGCCACACAAGCAATGAATTATCCATTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGTTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGCAGAGAAGATTTCTCATTCCAAGGTTGTAATAATTATAAGAAAAGAATGTCACATAACAATAATAATGATCATGACTTGGGTGAATTGCAAGAAATAGCACTTAGGATGATGAGGAACTAA

Protein sequence

>Msa1163670

MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKSQLSHNIENNNQWTGNNNNVAATQAMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQGCNNYKKRMSHNNNNDHDLGELQEIALRMMRN*