AlfalfaGEDB | Msa0432490

M. sativa cultivar zhongmu-4 / Msa0432490

KEGG: -
GO: -
PFAM: PF14547.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432490	XP_003603363.1	53.543	127	31	3	1	99	1	127	1.46e-24	110
Msa0432490	XP_003603363.1	95.420	131	3	2	389	518	1	129	2.12e-56	195

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432490	sp\|Q9SU35\|ERLL1_ARATH	61.176	85	31	2	435	518	78	161	6.34e-28	112
Msa0432490	sp\|Q9SU35\|ERLL1_ARATH	66.038	53	18	0	43	95	103	155	3.90e-17	82.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432490	G7JAH5	53.543	127	31	3	1	99	1	127	6.98e-25	110
Msa0432490	G7JAH5	95.420	131	3	2	389	518	1	129	1.01e-56	195

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0432490	0.835117	2.022613e-56	-8.615850e-47
Msa0000800	Msa0432490	-0.815716	8.017974e-52	-8.615850e-47
Msa0001040	Msa0432490	0.801421	9.075704e-49	-8.615850e-47
Msa0001510	Msa0432490	0.879848	8.914050e-70	-8.615850e-47
Msa0001550	Msa0432490	0.860272	2.318902e-63	-8.615850e-47
Msa0002110	Msa0432490	0.909063	8.610573e-82	-8.615850e-47
Msa0002690	Msa0432490	0.939842	6.431154e-100	-8.615850e-47
Msa0002700	Msa0432490	0.936808	9.594861e-98	-8.615850e-47
Msa0003340	Msa0432490	0.859230	4.774456e-63	-8.615850e-47
Msa0004180	Msa0432490	0.941799	2.213092e-101	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432490	MtrunA17_Chr3g0137531	95.420	131	3	2	389	518	1	129	1.95e-60	195
Msa0432490	MtrunA17_Chr3g0137531	53.543	127	31	3	1	99	1	127	1.35e-28	110
Msa0432490	MtrunA17_Chr3g0137521	73.846	130	32	2	389	517	1	129	2.27e-53	176
Msa0432490	MtrunA17_Chr3g0137521	64.844	128	16	2	1	99	1	128	3.52e-38	136
Msa0432490	MtrunA17_Chr1g0149481	57.229	166	33	5	389	518	1	164	7.84e-47	160
Msa0432490	MtrunA17_Chr1g0149481	44.937	158	24	3	1	95	1	158	1.44e-26	105
Msa0432490	MtrunA17_Chr1g0149491	60.131	153	36	3	389	518	1	151	5.26e-41	144
Msa0432490	MtrunA17_Chr1g0149491	79.630	54	11	0	42	95	92	145	9.31e-23	94.7
Msa0432490	MtrunA17_Chr6g0462901	53.247	154	57	4	112	250	705	858	3.90e-40	155
Msa0432490	MtrunA17_Chr6g0462901	33.533	167	102	2	207	373	908	1065	7.38e-19	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432490	AT2G45180.1	69.048	84	25	1	435	518	52	134	4.11e-31	117
Msa0432490	AT2G45180.1	68.421	57	18	0	39	95	72	128	4.50e-16	75.5
Msa0432490	AT4G12470.1	61.176	85	31	2	435	518	78	161	6.44e-29	112
Msa0432490	AT4G12470.1	66.038	53	18	0	43	95	103	155	3.96e-18	82.0
Msa0432490	AT4G12490.1	38.798	183	58	4	389	518	1	182	8.08e-29	112
Msa0432490	AT4G12490.1	69.091	55	15	1	41	95	124	176	2.28e-16	77.8
Msa0432490	AT4G12500.1	38.764	178	60	4	389	518	1	177	1.45e-28	112
Msa0432490	AT4G12500.1	63.158	57	21	0	43	99	119	175	8.16e-17	79.0
Msa0432490	AT4G12480.1	60.227	88	33	2	432	518	82	168	7.17e-28	109
Msa0432490	AT4G12480.1	50.000	86	35	1	22	99	81	166	2.36e-17	80.1

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Find 155 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATAGTGAGTATGA+TGG	0.549040	3_2:+84632808	Msa0432490:CDS
AAATGGAGGGTTGAATAAAA+AGG	0.265889	3_2:+84633401	Msa0432490:CDS
AAATGTTGTGCATTGATTAA+GGG	0.358491	3_2:+84631665	Msa0432490:CDS
AACAGTCTGGAGAGAACGAA+AGG	0.546633	3_2:+84632280	Msa0432490:intron
AAGAAGATTGCTAAATTAAC+TGG	0.302491	3_2:+84632920	Msa0432490:CDS
AAGAAGCAGGAAAGAAGACC+AGG	0.544029	3_2:+84633737	Msa0432490:CDS
AAGAGAAAGCACTAAAATTA+AGG	0.315935	3_2:-84631462	None:intergenic
AAGCACCAAGGATCCAGGTG+AGG	0.647508	3_2:-84637343	None:intergenic
AAGCCAACACCTTCACCCCA+AGG	0.614009	3_2:+84637122	Msa0432490:CDS
AAGGAGAGAGAGTACTAAAA+TGG	0.390388	3_2:-84637039	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAAGGCAGAGAATTTGT+TGG	-	chr3_2:84631450-84631469	None:intergenic	30.0%
ATAACCTTGAACTAACAGAA+GGG	-	chr3_2:84634550-84634569	None:intergenic	30.0%
TATAACCTTGAACTAACAGA+AGG	-	chr3_2:84634549-84634568	None:intergenic	30.0%
TGTTAGTTCAAGGTTATAAC+CGG	+	chr3_2:84632166-84632185	Msa0432490:intron	30.0%
GGAAATGAAGGAAATTAAGA+AGG	+	chr3_2:84632643-84632662	Msa0432490:CDS	30.0%
GACAACAATGACAGAATTAA+AGG	-	chr3_2:84632780-84632799	None:intergenic	30.0%
AAAACCAATAGTGAGTATGA+TGG	+	chr3_2:84632808-84632827	Msa0432490:CDS	30.0%
TAACTGGATATAGAAATCAG+TGG	+	chr3_2:84632936-84632955	Msa0432490:CDS	30.0%
TTGTAATTGCATGAACACAT+GGG	-	chr3_2:84633164-84633183	None:intergenic	30.0%
AATTACAAGCATGCAAAAGA+AGG	+	chr3_2:84633176-84633195	Msa0432490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	84631440	84637403	84631440	ID=Msa0432490;Name=Msa0432490
chr3_2	mRNA	84631440	84637403	84631440	ID=Msa0432490-mRNA-1;Parent=Msa0432490;Name=Msa0432490-mRNA-1;_AED=0.17;_eAED=0.24;_QI=0\|0\|0\|1\|0.28\|0.25\|8\|0\|518
chr3_2	exon	84631440	84631572	84631440	ID=Msa0432490-mRNA-1:exon:23974;Parent=Msa0432490-mRNA-1
chr3_2	exon	84631660	84631815	84631660	ID=Msa0432490-mRNA-1:exon:23975;Parent=Msa0432490-mRNA-1
chr3_2	exon	84632285	84632373	84632285	ID=Msa0432490-mRNA-1:exon:23976;Parent=Msa0432490-mRNA-1
chr3_2	exon	84632608	84632841	84632608	ID=Msa0432490-mRNA-1:exon:23977;Parent=Msa0432490-mRNA-1
chr3_2	exon	84632857	84632966	84632857	ID=Msa0432490-mRNA-1:exon:23978;Parent=Msa0432490-mRNA-1
chr3_2	exon	84633311	84633713	84633311	ID=Msa0432490-mRNA-1:exon:23979;Parent=Msa0432490-mRNA-1
chr3_2	exon	84633722	84633758	84633722	ID=Msa0432490-mRNA-1:exon:23980;Parent=Msa0432490-mRNA-1
chr3_2	exon	84637009	84637403	84637009	ID=Msa0432490-mRNA-1:exon:23981;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84631440	84631572	84631440	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84631660	84631815	84631660	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84632285	84632373	84632285	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84632608	84632841	84632608	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84632857	84632966	84632857	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84633311	84633713	84633311	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84633722	84633758	84633722	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2	CDS	84637009	84637403	84637009	ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1

Gene Sequence

>Msa0432490

ATGGCTTCCAACAAATTCTCTGCCTTAATTTTAGTGCTTTCTCTTCTTGCCTACTCAACATTCACCGAAGCTAATTGTCCACCATCACCAAAGCCAACACCTTCACCTGCTCCTGTTCCACCTTCACCCAAAGGTAGTAAATGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAGGCTGCACTTTGTCTTTGCACTGCACTTAAGGCTAATGTGCTTGGAATCAACTTGAACGTGCCTATCACGCTCAGCGTGCTCCTTAGTGCATGTCAAAAAACCGTCCCTCCTGTCTGGAGAGAACGAAAGGGGATAGGGTTACGTGATAGAGATAACCACACTGAAAGCTATCGGAGAAGCTTCTTCGACGGACGGAAAGTGGCTGCCAAGGCTTCATATCCACAAGCCTGGGAAAGGGAAATGAAGGAAATTAAGAAGGTCAATCTGGAAGCATATAAGTATCTTATGAAAATACCACCTAGACACTGGACTAGGGCATGGTTCAAACCAAATCCTCAATGTGACACACTGTTAAATAACATGTCTGAAGCCTTTAATTCTGTCATTGTTGTCCCAAGACAAAAACCAATAGTGAGTATGATGGAAGATATAAGGAGGTGGTATAAAAATAGGGAGAAAAGTGCATTGTATGAAGGTGACATACTGCCTAAGATCAAAAAGAAGATTGCTAAATTAACTGGATATAGAAATCAGTGGCTAGCAAGATATAATGACTTGCAGCCACCACCCATTAGGAGACAACCTGGAAGGCCAAAGAAAAAGAGGAATAGAGAGGCAGGTGAATTACTCAAAGAAAATGGAGGGTTGAATAAAAAGGGATTGAAGCAAAAATGTAGGAGGTGTAACCAACCTGGGCACAATAAAGCTACATGTAAACTACCTCCTCCACTACCACCTCAACCACAACCAGCAACTCAACCCCCACCTTCACAGCCACCTACTCAACCACCACCTTCACAGCCAGCAACTCAACCACCACCTCAACCACCACCTTCACAGCCACCTACTCAACCACCACCTTCACAGCCAGCAACTCAACCACCACCTATCACCAGAAAATCTCTTACTAAGAGAAAGAGGCCAGAAGCCTCATCTCAGCCAACAACTGAGGTCTCCAATCAAAAGAAGCAGGAAAGAAGACCAGTCATGGCTTCCAACACCAAATTCTTTGCCACCATTTTAGTACTCTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAAAGCCAACACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGGAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTCGGAATAAACTTGAATGTACCTATCGCCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA

Protein sequence

>Msa0432490

MASNKFSALILVLSLLAYSTFTEANCPPSPKPTPSPAPVPPSPKGSKCCALIKGLADLEAALCLCTALKANVLGINLNVPITLSVLLSACQKTVPPVWRERKGIGLRDRDNHTESYRRSFFDGRKVAAKASYPQAWEREMKEIKKVNLEAYKYLMKIPPRHWTRAWFKPNPQCDTLLNNMSEAFNSVIVVPRQKPIVSMMEDIRRWYKNREKSALYEGDILPKIKKKIAKLTGYRNQWLARYNDLQPPPIRRQPGRPKKKRNREAGELLKENGGLNKKGLKQKCRRCNQPGHNKATCKLPPPLPPQPQPATQPPPSQPPTQPPPSQPATQPPPQPPPSQPPTQPPPSQPATQPPPITRKSLTKRKRPEASSQPTTEVSNQKKQERRPVMASNTKFFATILVLSLLAYSTFTEAKGSCSPSPKPKPKPTPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPIALTWILGACQKTIPPGFQCA*