AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432490 MtrunA17_Chr3g0137531 95.420 131 3 2 389 518 1 129 1.95e-60 195
Msa0432490 MtrunA17_Chr3g0137531 53.543 127 31 3 1 99 1 127 1.35e-28 110
Msa0432490 MtrunA17_Chr3g0137521 73.846 130 32 2 389 517 1 129 2.27e-53 176
Msa0432490 MtrunA17_Chr3g0137521 64.844 128 16 2 1 99 1 128 3.52e-38 136
Msa0432490 MtrunA17_Chr1g0149481 57.229 166 33 5 389 518 1 164 7.84e-47 160
Msa0432490 MtrunA17_Chr1g0149481 44.937 158 24 3 1 95 1 158 1.44e-26 105
Msa0432490 MtrunA17_Chr1g0149491 60.131 153 36 3 389 518 1 151 5.26e-41 144
Msa0432490 MtrunA17_Chr1g0149491 79.630 54 11 0 42 95 92 145 9.31e-23 94.7
Msa0432490 MtrunA17_Chr6g0462901 53.247 154 57 4 112 250 705 858 3.90e-40 155
Msa0432490 MtrunA17_Chr6g0462901 33.533 167 102 2 207 373 908 1065 7.38e-19 90.5
Msa0432490 MtrunA17_Chr1g0149471 78.571 84 17 1 435 518 128 210 8.01e-39 140
Msa0432490 MtrunA17_Chr1g0149471 79.630 54 11 0 42 95 151 204 5.62e-21 91.3
Msa0432490 MtrunA17_Chr6g0455001 34.749 259 135 7 112 349 111 356 1.54e-35 137
Msa0432490 MtrunA17_Chr3g0081981 49.645 141 60 2 112 241 262 402 3.81e-34 136
Msa0432490 MtrunA17_Chr3g0081981 33.955 268 138 11 124 380 387 626 5.62e-23 102
Msa0432490 MtrunA17_Chr2g0281381 53.333 120 51 1 127 241 682 801 6.94e-33 133
Msa0432490 MtrunA17_Chr2g0281381 56.897 58 24 1 242 299 893 949 4.12e-11 65.9
Msa0432490 MtrunA17_Chr4g0060391 50.820 122 56 2 397 518 6 123 2.10e-29 112
Msa0432490 MtrunA17_Chr4g0060391 72.917 48 13 0 48 95 70 117 4.02e-15 72.0
Msa0432490 MtrunA17_Chr4g0056371 63.095 84 30 1 435 518 50 132 3.72e-28 108
Msa0432490 MtrunA17_Chr4g0056371 75.000 48 12 0 48 95 79 126 6.17e-16 74.7
Msa0432490 MtrunA17_Chr4g0056411 40.588 170 58 6 389 517 1 168 2.35e-26 105
Msa0432490 MtrunA17_Chr4g0056411 70.833 48 14 0 48 95 116 163 1.88e-15 74.3
Msa0432490 MtrunA17_Chr2g0290521 47.619 126 61 3 392 517 6 126 1.26e-25 102
Msa0432490 MtrunA17_Chr2g0290521 42.609 115 33 4 8 92 8 119 9.68e-15 70.9
Msa0432490 MtrunA17_Chr4g0056391 56.818 88 36 2 432 518 57 143 1.29e-25 102
Msa0432490 MtrunA17_Chr4g0056391 65.385 52 18 0 48 99 90 141 1.17e-15 73.9
Msa0432490 MtrunA17_Chr4g0056401 57.647 85 34 2 435 518 51 134 2.30e-25 101
Msa0432490 MtrunA17_Chr4g0056401 59.259 54 22 0 42 95 75 128 5.56e-16 74.7
Msa0432490 MtrunA17_Chr4g0056381 58.333 84 32 3 435 517 105 186 6.08e-21 90.5
Msa0432490 MtrunA17_Chr6g0477921 33.721 172 91 4 85 238 590 756 2.06e-20 95.5
Msa0432490 MtrunA17_Chr6g0477881 33.721 172 91 4 85 238 590 756 2.22e-20 95.5
Msa0432490 MtrunA17_Chr5g0399081 47.619 84 41 2 435 517 95 176 3.27e-20 88.2
Msa0432490 MtrunA17_Chr5g0399091 46.429 84 42 2 435 517 88 169 1.15e-19 86.7
Msa0432490 MtrunA17_Chr2g0290571 48.750 80 38 2 438 517 122 198 5.47e-15 73.9
Msa0432490 MtrunA17_Chr2g0290571 42.188 64 37 0 39 102 137 200 9.35e-12 64.3
Msa0432490 MtrunA17_Chr3g0120411 47.674 86 44 1 432 517 251 335 2.27e-14 74.3
Msa0432490 MtrunA17_Chr5g0404701 35.849 106 63 1 138 238 6 111 6.98e-14 70.5
Msa0432490 MtrunA17_Chr2g0290561 47.500 80 39 2 438 517 118 194 2.11e-13 68.9
Msa0432490 MtrunA17_Chr2g0290561 42.188 64 37 0 39 102 133 196 1.01e-11 64.3
Msa0432490 MtrunA17_Chr8g0373261 32.110 109 69 1 127 230 625 733 1.08e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432490 AT2G45180.1 69.048 84 25 1 435 518 52 134 4.11e-31 117
Msa0432490 AT2G45180.1 68.421 57 18 0 39 95 72 128 4.50e-16 75.5
Msa0432490 AT4G12470.1 61.176 85 31 2 435 518 78 161 6.44e-29 112
Msa0432490 AT4G12470.1 66.038 53 18 0 43 95 103 155 3.96e-18 82.0
Msa0432490 AT4G12490.1 38.798 183 58 4 389 518 1 182 8.08e-29 112
Msa0432490 AT4G12490.1 69.091 55 15 1 41 95 124 176 2.28e-16 77.8
Msa0432490 AT4G12500.1 38.764 178 60 4 389 518 1 177 1.45e-28 112
Msa0432490 AT4G12500.1 63.158 57 21 0 43 99 119 175 8.16e-17 79.0
Msa0432490 AT4G12480.1 60.227 88 33 2 432 518 82 168 7.17e-28 109
Msa0432490 AT4G12480.1 50.000 86 35 1 22 99 81 166 2.36e-17 80.1
Msa0432490 AT5G46900.1 64.835 91 28 3 428 518 41 127 6.30e-27 105
Msa0432490 AT5G46900.1 56.322 87 20 2 28 99 42 125 3.88e-19 84.0
Msa0432490 AT1G62510.1 61.905 84 30 2 435 517 67 149 4.40e-26 104
Msa0432490 AT1G62510.1 75.000 48 12 0 48 95 97 144 1.77e-16 77.0
Msa0432490 AT4G12520.1 51.613 124 56 3 396 518 9 129 6.76e-26 103
Msa0432490 AT4G12520.1 72.917 48 13 0 48 95 76 123 2.23e-15 73.2
Msa0432490 AT4G12510.1 51.613 124 56 3 396 518 9 129 6.76e-26 103
Msa0432490 AT4G12510.1 72.917 48 13 0 48 95 76 123 2.23e-15 73.2
Msa0432490 AT5G46890.1 60.000 95 34 2 424 518 37 127 1.57e-25 102
Msa0432490 AT5G46890.1 77.358 53 12 0 43 95 69 121 1.88e-18 82.0
Msa0432490 AT1G12090.1 62.195 82 29 2 437 517 57 137 1.73e-25 102
Msa0432490 AT1G12090.1 69.231 52 16 0 48 99 85 136 1.79e-17 79.7
Msa0432490 AT1G12100.1 39.716 141 69 5 381 518 5 132 3.81e-24 98.2
Msa0432490 AT1G12100.1 50.877 57 28 0 39 95 70 126 6.30e-14 69.3
Msa0432490 AT4G00165.1 48.598 107 50 3 415 517 23 128 9.49e-24 97.1
Msa0432490 AT4G00165.1 53.448 58 26 1 39 95 66 123 1.87e-12 65.1
Msa0432490 AT4G00165.2 48.598 107 50 3 415 517 23 128 9.49e-24 97.1
Msa0432490 AT4G00165.2 53.448 58 26 1 39 95 66 123 1.87e-12 65.1
Msa0432490 AT4G12550.1 50.000 92 44 2 428 518 21 111 3.97e-23 94.7
Msa0432490 AT4G12550.1 62.264 53 19 1 48 99 57 109 3.07e-14 69.3
Msa0432490 AT4G22460.1 50.526 95 46 1 422 516 38 131 1.98e-22 93.6
Msa0432490 AT4G22460.1 64.151 53 19 0 40 92 72 124 8.94e-15 71.6
Msa0432490 AT4G12530.1 51.807 83 39 1 435 517 34 115 1.71e-21 90.1
Msa0432490 AT3G22142.1 53.571 84 36 3 435 517 1397 1478 3.24e-21 98.6
Msa0432490 AT4G12545.1 50.000 92 41 3 428 518 21 108 4.70e-20 85.9
Msa0432490 AT4G12545.1 69.388 49 14 1 48 95 54 102 5.23e-14 68.6
Msa0432490 AT2G10940.2 48.864 88 42 3 432 518 205 290 1.17e-17 84.0
Msa0432490 AT2G10940.1 48.864 88 42 3 432 518 205 290 1.17e-17 84.0
Msa0432490 AT4G15160.2 50.588 85 39 3 435 517 99 182 1.42e-15 75.9
Msa0432490 AT1G62500.1 43.678 87 46 3 432 517 209 293 1.10e-13 72.4
Msa0432490 AT4G22490.1 41.053 95 48 4 426 517 27 116 1.98e-13 67.4

Find 155 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAACTTTAAGGTATCTT+TGG 0.166346 3_2:-84637153 None:intergenic
TAAATGTTGTGCATTGATTA+AGG 0.202840 3_2:+84631664 Msa0432490:CDS
AGCACAAACCCCTAACTTTA+AGG 0.205248 3_2:-84637162 None:intergenic
ATCTTTGGGGCAGTGACCTT+GGG 0.214560 3_2:-84637138 None:intergenic
TTGTCTTTGCACTGCAATTA+AGG 0.231170 3_2:+84637283 Msa0432490:CDS
AATCAAAGGTTTGGCTGATT+TGG 0.237754 3_2:+84637250 Msa0432490:CDS
GACAACAATGACAGAATTAA+AGG 0.255077 3_2:-84632777 None:intergenic
CCTTCCAGGTTGTCTCCTAA+TGG 0.256214 3_2:-84633334 None:intergenic
AAATGGAGGGTTGAATAAAA+AGG 0.265889 3_2:+84633401 Msa0432490:CDS
TAAAATGGTGGCAAAGAATT+TGG 0.290687 3_2:-84637024 None:intergenic
CCTAACTTTAAGGTATCTTT+GGG 0.293316 3_2:-84637152 None:intergenic
TGAGGTGGTGGTTGAGTTGC+TGG 0.293662 3_2:-84633567 None:intergenic
GAAGGTGTTGGCTTTGGCTT+TGG 0.296299 3_2:-84637113 None:intergenic
TGAGTATGATGGAAGATATA+AGG 0.301455 3_2:+84632819 Msa0432490:CDS
AAGAAGATTGCTAAATTAAC+TGG 0.302491 3_2:+84632920 Msa0432490:CDS
GGCTGTGAAGGTGGTGGTTG+AGG 0.305973 3_2:-84633585 None:intergenic
GGTGAATTACTCAAAGAAAA+TGG 0.307135 3_2:+84633384 Msa0432490:CDS
ATAGGTGGTGGTTGAGTTGC+TGG 0.307770 3_2:-84633633 None:intergenic
GATTAAGGGTTTGGCTGATT+TGG 0.309202 3_2:+84631679 Msa0432490:CDS
AAGAGAAAGCACTAAAATTA+AGG 0.315935 3_2:-84631462 None:intergenic
TGGGGTGAAGGTGTTGGCTT+TGG 0.321997 3_2:-84637119 None:intergenic
CCCAAAGATACCTTAAAGTT+AGG 0.331524 3_2:+84637152 Msa0432490:CDS
GTTGGCTTTGGCTTTGGCTT+TGG 0.335137 3_2:-84637107 None:intergenic
AGTGTGTCACATTGAGGATT+TGG 0.335215 3_2:-84632734 None:intergenic
TTGTCTTTGCACTGCACTTA+AGG 0.338630 3_2:+84631712 Msa0432490:CDS
TCTTCCATCATACTCACTAT+TGG 0.343504 3_2:-84632812 None:intergenic
GTTGGCTGAGATGAGGCTTC+TGG 0.349129 3_2:-84633687 None:intergenic
TGAGTTGCTGGTTGTGGTTG+AGG 0.357033 3_2:-84633501 None:intergenic
AAATGTTGTGCATTGATTAA+GGG 0.358491 3_2:+84631665 Msa0432490:CDS
GAGTAGGTGGCTGTGAAGGT+GGG 0.358621 3_2:-84633527 None:intergenic
CTTCCAGGTTGTCTCCTAAT+GGG 0.378096 3_2:-84633333 None:intergenic
TGAGTAGGTGGCTGTGAAGG+TGG 0.380359 3_2:-84633528 None:intergenic
TATCTTTGGGGCAGTGACCT+TGG 0.380498 3_2:-84637139 None:intergenic
CCAAAGATACCTTAAAGTTA+GGG 0.385359 3_2:+84637153 Msa0432490:CDS
GGGCAGTGACCTTGGGGTGA+AGG 0.389809 3_2:-84637131 None:intergenic
AAGGAGAGAGAGTACTAAAA+TGG 0.390388 3_2:-84637039 None:intergenic
GAAGGTGGTGGTTGAGGTGG+TGG 0.391003 3_2:-84633579 None:intergenic
GGAAATTAAGAAGGTCAATC+TGG 0.395139 3_2:+84632652 Msa0432490:CDS
GGTTGTGGTTGAGGTGGTAG+TGG 0.396194 3_2:-84633492 None:intergenic
TTCCTTCATTTCCCTTTCCC+AGG 0.408068 3_2:-84632633 None:intergenic
AGTAGGTGGCTGTGAAGGTG+GGG 0.410006 3_2:-84633526 None:intergenic
GTTGTTGGGAATCCTGCTTC+AGG 0.413980 3_2:+84637209 Msa0432490:CDS
GAAGGTGTTGGCTTTGGTGA+TGG 0.414445 3_2:-84631521 None:intergenic
TTTGGCTTTGGCTTTGGTGA+TGG 0.416452 3_2:-84637101 None:intergenic
CTCAACATTTACTGAGGCTA+AGG 0.420857 3_2:+84637067 Msa0432490:CDS
ACTTGCAGCCACCACCCATT+AGG 0.420981 3_2:+84633319 Msa0432490:CDS
GAGTATGATGGAAGATATAA+GGG 0.426958 3_2:+84632820 Msa0432490:CDS
CCTTTGGGTGAAGGTGGAAC+AGG 0.427685 3_2:-84631551 None:intergenic
TTGTGCATTGATTAAGGGTT+TGG 0.429971 3_2:+84631670 Msa0432490:CDS
ATCGCCCTCACCTGGATCCT+TGG 0.432033 3_2:+84637338 Msa0432490:CDS
AGGAGCACGCTGAGCGTGAT+AGG 0.432511 3_2:-84631764 None:intergenic
GGGCATTGACCTTTGGGTGA+AGG 0.436950 3_2:-84631560 None:intergenic
AATTAAGGCAGAGAATTTGT+TGG 0.438270 3_2:-84631447 None:intergenic
GGTTGAGGTGGTAGTGGAGG+AGG 0.443374 3_2:-84633486 None:intergenic
TGTGAAGGTGGTGGTTGAGT+AGG 0.454878 3_2:-84633543 None:intergenic
TGTGAAGGTGGTGGTTGAGT+AGG 0.454878 3_2:-84633609 None:intergenic
TTGACAAGCACCAAGGATCC+AGG 0.457767 3_2:-84637348 None:intergenic
GCAGGTGAAGGTGTTGGCTT+TGG 0.458002 3_2:-84631527 None:intergenic
ATTTCCCTTTCCCAGGCTTG+TGG 0.460002 3_2:-84632626 None:intergenic
GACTGGTTAATGTTGTTGTT+GGG 0.463209 3_2:+84637195 Msa0432490:CDS
GGTTGAGTTGCTGGCTGTGA+AGG 0.463589 3_2:-84633558 None:intergenic
GGTTGAGTTGCTGGCTGTGA+AGG 0.463589 3_2:-84633624 None:intergenic
TGTGAAGGTGGTGGTTGAGG+TGG 0.464473 3_2:-84633582 None:intergenic
TAAGGGTTTGGCTGATTTGG+AGG 0.464987 3_2:+84631682 Msa0432490:CDS
TTGTGCAATAATCAAAGGTT+TGG 0.466120 3_2:+84637241 Msa0432490:CDS
AGGCTTCATATCCACAAGCC+TGG 0.471620 3_2:+84632615 Msa0432490:CDS
TGAGTAGGTGGCTGTGAAGG+TGG 0.477217 3_2:-84633594 None:intergenic
GGACTGGTTAATGTTGTTGT+TGG 0.480624 3_2:+84637194 Msa0432490:CDS
GGTGAAGGTGGAACAGGAGC+AGG 0.481606 3_2:-84631545 None:intergenic
AATCTCTTACTAAGAGAAAG+AGG 0.483020 3_2:+84633664 Msa0432490:CDS
GCACTTAAGGCTAATGTGCT+TGG 0.487972 3_2:+84631725 Msa0432490:CDS
TGGAGAGAACGAAAGGGGAT+AGG 0.490636 3_2:+84632287 Msa0432490:CDS
GGCTTCATATCCACAAGCCT+GGG 0.491112 3_2:+84632616 Msa0432490:CDS
GGTTGAGTAGGTGGCTGTGA+AGG 0.492543 3_2:-84633531 None:intergenic
GGTTGAGTAGGTGGCTGTGA+AGG 0.492543 3_2:-84633597 None:intergenic
GACCTCCTTAAGACAGTTGT+TGG 0.494190 3_2:-84633705 None:intergenic
CATGTAGCTTTATTGTGCCC+AGG 0.495819 3_2:-84633456 None:intergenic
ATGTACCTATCGCCCTCACC+TGG 0.498697 3_2:+84637330 Msa0432490:CDS
TGACCTTGGGGTGAAGGTGT+TGG 0.502306 3_2:-84637125 None:intergenic
TGTGGTTGAGGTGGTAGTGG+AGG 0.507191 3_2:-84633489 None:intergenic
TGTAGGAGGTGTAACCAACC+TGG 0.509796 3_2:+84633438 Msa0432490:CDS
CTTCTTCGACGGACGGAAAG+TGG 0.513147 3_2:+84632352 Msa0432490:CDS
TTTAACAGTGTGTCACATTG+AGG 0.517306 3_2:-84632740 None:intergenic
GAGAAAAGTGCATTGTATGA+AGG 0.520515 3_2:+84632875 Msa0432490:CDS
GGTGTTGGCTTTGGTGATGG+TGG 0.522065 3_2:-84631518 None:intergenic
CATATCCACAAGCCTGGGAA+AGG 0.522931 3_2:+84632621 Msa0432490:CDS
AATTGTTGTGCAATAATCAA+AGG 0.523157 3_2:+84637236 Msa0432490:CDS
AGGATCCAGGTGAGGGCGAT+AGG 0.525457 3_2:-84637335 None:intergenic
GTAGGTGGCTGTGAAGGTGG+GGG 0.526013 3_2:-84633525 None:intergenic
AGCCTGGGAAAGGGAAATGA+AGG 0.528833 3_2:+84632631 Msa0432490:CDS
GGAGAGAACGAAAGGGGATA+GGG 0.530350 3_2:+84632288 Msa0432490:CDS
GCAATTAAGGCCAATGTGCT+CGG 0.533371 3_2:+84637296 Msa0432490:CDS
CATTGACCTTTGGGTGAAGG+TGG 0.538821 3_2:-84631557 None:intergenic
GGCTTGTGGATATGAAGCCT+TGG 0.540532 3_2:-84632612 None:intergenic
ATATCCACAAGCCTGGGAAA+GGG 0.541199 3_2:+84632622 Msa0432490:CDS
AAGAAGCAGGAAAGAAGACC+AGG 0.544029 3_2:+84633737 Msa0432490:CDS
TCTTTGGGGCAGTGACCTTG+GGG 0.545751 3_2:-84637137 None:intergenic
TGAAAATACCACCTAGACAC+TGG 0.546388 3_2:+84632693 Msa0432490:CDS
AACAGTCTGGAGAGAACGAA+AGG 0.546633 3_2:+84632280 Msa0432490:intron
GGAAATGAAGGAAATTAAGA+AGG 0.547835 3_2:+84632643 Msa0432490:CDS
AAAACCAATAGTGAGTATGA+TGG 0.549040 3_2:+84632808 Msa0432490:CDS
ACAGTCTGGAGAGAACGAAA+GGG 0.553506 3_2:+84632281 Msa0432490:intron
CCTTAGGCACATTGAAAACC+AGG 0.555069 3_2:-84637383 None:intergenic
GGTCTCCAATCAAAAGAAGC+AGG 0.556814 3_2:+84633724 Msa0432490:CDS
CATGCCCTAGTCCAGTGTCT+AGG 0.557114 3_2:-84632704 None:intergenic
GGTTGTCTCCTAATGGGTGG+TGG 0.559681 3_2:-84633327 None:intergenic
CAAAGATACCTTAAAGTTAG+GGG 0.560461 3_2:+84637154 Msa0432490:CDS
TACCACCTAGACACTGGACT+AGG 0.562265 3_2:+84632699 Msa0432490:CDS
ATAGAAATCAGTGGCTAGCA+AGG 0.566702 3_2:+84632945 Msa0432490:CDS
GACAGTTGTTGGCTGAGATG+AGG 0.567880 3_2:-84633694 None:intergenic
ACATTGGAAACCAGGAGGGA+CGG 0.567925 3_2:-84631804 None:intergenic
GAAGGTGGTGGTTGAGTAGG+TGG 0.570197 3_2:-84633540 None:intergenic
GAAGGTGGTGGTTGAGTAGG+TGG 0.570197 3_2:-84633606 None:intergenic
CCTGTTCCACCTTCACCCAA+AGG 0.572122 3_2:+84631551 Msa0432490:CDS
TAGCTTTATTGTGCCCAGGT+TGG 0.574747 3_2:-84633452 None:intergenic
CCACCCATTAGGAGACAACC+TGG 0.576718 3_2:+84633330 Msa0432490:CDS
ACAGGAGCAGGTGAAGGTGT+TGG 0.576951 3_2:-84631533 None:intergenic
TGAGTTGCTGGCTGTGAAGG+TGG 0.578803 3_2:-84633555 None:intergenic
TGAGTTGCTGGCTGTGAAGG+TGG 0.578803 3_2:-84633621 None:intergenic
TGATGGTGGACAATTAGCTT+CGG 0.580942 3_2:-84631504 None:intergenic
GTTGATGTGGAAGGCTGCCA+AGG 0.584999 3_2:+84632595 Msa0432490:intron
GTAGGTGGCTGTGAAGGTGG+TGG 0.589593 3_2:-84633591 None:intergenic
CAGTAAATGTTGAGTAAGCA+AGG 0.592270 3_2:-84637058 None:intergenic
ACCACCTAGACACTGGACTA+GGG 0.593505 3_2:+84632700 Msa0432490:CDS
GGTGGAACAGGAGCAGGTGA+AGG 0.595926 3_2:-84631539 None:intergenic
AGCTTCGGTGAATGTTGAGT+AGG 0.595958 3_2:-84631489 None:intergenic
TCAACATTTACTGAGGCTAA+GGG 0.596026 3_2:+84637068 Msa0432490:CDS
CAAGTTTATTCCGAGCACAT+TGG 0.596849 3_2:-84637306 None:intergenic
GTTGCTGGCTGTGAAGGTGG+TGG 0.597869 3_2:-84633552 None:intergenic
GTTGCTGGCTGTGAAGGTGG+TGG 0.597869 3_2:-84633618 None:intergenic
ATAACCACACTGAAAGCTAT+CGG 0.598696 3_2:+84632324 Msa0432490:CDS
GGTGGCAAAGAATTTGGTGT+TGG 0.599992 3_2:-84637018 None:intergenic
CAACAATTACTACCTGAAGC+AGG 0.602543 3_2:-84637221 None:intergenic
GTTGCTGGTTGTGGTTGAGG+TGG 0.603143 3_2:-84633498 None:intergenic
AGCACCAAGGATCCAGGTGA+GGG 0.603864 3_2:-84637342 None:intergenic
GCCCTAGTCCAGTGTCTAGG+TGG 0.609357 3_2:-84632701 None:intergenic
CCAGGTTGTCTCCTAATGGG+TGG 0.611453 3_2:-84633330 None:intergenic
CTAGACACTGGACTAGGGCA+TGG 0.613605 3_2:+84632705 Msa0432490:CDS
AAGCCAACACCTTCACCCCA+AGG 0.614009 3_2:+84637122 Msa0432490:CDS
TGCTTACTCAACATTTACTG+AGG 0.622636 3_2:+84637061 Msa0432490:CDS
GGAGAAGCTTCTTCGACGGA+CGG 0.626925 3_2:+84632345 Msa0432490:CDS
TATCGGAGAAGCTTCTTCGA+CGG 0.630032 3_2:+84632341 Msa0432490:CDS
GAGAGAGAGTACTAAAATGG+TGG 0.630559 3_2:-84637036 None:intergenic
AATTACTCAAAGAAAATGGA+GGG 0.634711 3_2:+84633388 Msa0432490:CDS
GAATTACTCAAAGAAAATGG+AGG 0.636178 3_2:+84633387 Msa0432490:CDS
AAGCACCAAGGATCCAGGTG+AGG 0.647508 3_2:-84637343 None:intergenic
CCATTAGGAGACAACCTGGA+AGG 0.650868 3_2:+84633334 Msa0432490:CDS
CAGTCTGGAGAGAACGAAAG+GGG 0.652240 3_2:+84632282 Msa0432490:intron
AGGGACATTGGAAACCAGGA+GGG 0.669232 3_2:-84631808 None:intergenic
AGGCACATTGAAAACCAGGA+GGG 0.674973 3_2:-84637379 None:intergenic
GTAGGAGGTGTAACCAACCT+GGG 0.687631 3_2:+84633439 Msa0432490:CDS
TTCTCCGATAGCTTTCAGTG+TGG 0.694699 3_2:-84632328 None:intergenic
CTAACTTTAAGGTATCTTTG+GGG 0.708820 3_2:-84637151 None:intergenic
TAACTGGATATAGAAATCAG+TGG 0.709076 3_2:+84632936 Msa0432490:CDS
TAGGCACATTGAAAACCAGG+AGG 0.727521 3_2:-84637380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATTTTTTAATTAAA+TGG - chr3_2:84632235-84632254 None:intergenic 0.0%
!!! AAATTAATTTTTTAATTAAA+TGG + chr3_2:84634478-84634497 Msa0432490:intron 0.0%
!!! TACGTTTTATTAATTTATAT+GGG - chr3_2:84632001-84632020 None:intergenic 10.0%
!! AAATGAATATAAGATAATTT+AGG - chr3_2:84634853-84634872 None:intergenic 10.0%
!!! TGATTTTTAATTAATTGATT+TGG + chr3_2:84635821-84635840 Msa0432490:intron 10.0%
!!! TGTAACATTTTTTATGTTAT+CGG + chr3_2:84631942-84631961 Msa0432490:intron 15.0%
!!! GTACGTTTTATTAATTTATA+TGG - chr3_2:84632002-84632021 None:intergenic 15.0%
!! TTTCAACCAATAATAAAAAA+AGG + chr3_2:84632027-84632046 Msa0432490:intron 15.0%
!!! TTTAAGCCTTTTTTTATTAT+TGG - chr3_2:84632036-84632055 None:intergenic 15.0%
!! TAAAAATATAAAAAACAGTC+TGG + chr3_2:84632267-84632286 Msa0432490:intron 15.0%
!!! TAAAAACATTAAATTTTCCA+TGG - chr3_2:84633837-84633856 None:intergenic 15.0%
!!! TTAATGTTTTTATGCTTTTT+TGG + chr3_2:84633845-84633864 Msa0432490:intron 15.0%
!! TATTAAATGATAATCTTAAG+TGG + chr3_2:84634448-84634467 Msa0432490:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+GGG - chr3_2:84634957-84634976 None:intergenic 15.0%
!!! AGTTTTTTTTGCTTATAATT+TGG - chr3_2:84634958-84634977 None:intergenic 15.0%
!!! AACTTTTTTGCTTATAATAT+GGG - chr3_2:84634993-84635012 None:intergenic 15.0%
!!! AAACTTTTTTGCTTATAATA+TGG - chr3_2:84634994-84635013 None:intergenic 15.0%
!!! TTTTTTCTTATAATTTAGGA+TGG + chr3_2:84635232-84635251 Msa0432490:intron 15.0%
!!! CTTAATTATTTTGCTTTTTT+TGG - chr3_2:84635372-84635391 None:intergenic 15.0%
!! CAAAAAAAGCAAAATAATTA+AGG + chr3_2:84635370-84635389 Msa0432490:intron 15.0%
!! TAAAATAATAGATAGTTATG+TGG + chr3_2:84635401-84635420 Msa0432490:intron 15.0%
!!! ATTTTTAGAAATAGATGTTA+TGG - chr3_2:84635667-84635686 None:intergenic 15.0%
!!! ATTTGGTAAAATATTGATTT+TGG + chr3_2:84635838-84635857 Msa0432490:intron 15.0%
!! TTAAGTATAAAAATCATGTT+TGG + chr3_2:84635931-84635950 Msa0432490:intron 15.0%
!!! TTTTTTTTTTTTTGGTTACA+AGG - chr3_2:84636101-84636120 None:intergenic 15.0%
!!! TGTTTTCGTTTTTTTTTTTT+TGG - chr3_2:84636109-84636128 None:intergenic 15.0%
!!! AAAAATGAGTTGTAATATTT+TGG - chr3_2:84636814-84636833 None:intergenic 15.0%
!!! GTTTATTTTAGGTTTCAATT+TGG + chr3_2:84632075-84632094 Msa0432490:intron 20.0%
!!! GTGAAAAGTTTAAAACATAT+GGG - chr3_2:84634611-84634630 None:intergenic 20.0%
!!! TTTTAATTAAATGGATGCTT+AGG - chr3_2:84634487-84634506 None:intergenic 20.0%
!!! TTTGTTGAAATCATTTTGAA+TGG + chr3_2:84632511-84632530 Msa0432490:intron 20.0%
!! TTGTATGAAAATGTTATTGT+AGG + chr3_2:84633025-84633044 Msa0432490:intron 20.0%
!! AAATAAGTACCAAAATATGT+GGG - chr3_2:84633932-84633951 None:intergenic 20.0%
!! AAAATAAGTACCAAAATATG+TGG - chr3_2:84633933-84633952 None:intergenic 20.0%
!!! TTATCAATGTTAAGGTATTA+AGG - chr3_2:84634111-84634130 None:intergenic 20.0%
!! TTTCAATGTTATCAATGTTA+AGG - chr3_2:84634119-84634138 None:intergenic 20.0%
!! TTTAGTCAATATGTAACATT+TGG - chr3_2:84634162-84634181 None:intergenic 20.0%
!! AAAAATATAAAAGGCAAAGT+CGG - chr3_2:84634403-84634422 None:intergenic 20.0%
!!! TTTTAATTAAATGGATGCTT+AGG + chr3_2:84634487-84634506 Msa0432490:intron 20.0%
!!! GTGAAAAGTTTAAAACATAT+GGG + chr3_2:84634611-84634630 Msa0432490:intron 20.0%
!!! GTTTATTTTAGGTTTCAATT+TGG - chr3_2:84632075-84632094 None:intergenic 20.0%
!!! CTTTGCAAAACTTTTTTTTA+TGG - chr3_2:84634686-84634705 None:intergenic 20.0%
!!! CATAAAAAAAAGTTTTGCAA+AGG + chr3_2:84634684-84634703 Msa0432490:intron 20.0%
!!! TTTTGGTCAAACTAATAATT+TGG + chr3_2:84634815-84634834 Msa0432490:intron 20.0%
!! GATGTAAAAACAATTTGTAT+TGG - chr3_2:84635129-84635148 None:intergenic 20.0%
!! TTTCTATGAAACTTATTTCA+AGG + chr3_2:84635149-84635168 Msa0432490:intron 20.0%
!! ACTTTATAAAGACAATTTCA+TGG + chr3_2:84635262-84635281 Msa0432490:intron 20.0%
!! ATGAACTTCTAATGATAAAA+CGG - chr3_2:84636475-84636494 None:intergenic 20.0%
!! ATATCATCTCATAGATAAAA+TGG + chr3_2:84636736-84636755 Msa0432490:intron 20.0%
!! AGATAATAACAAATGAGAAA+AGG + chr3_2:84636769-84636788 Msa0432490:intron 20.0%
!!! ATTGCTACATTTAATTTGTA+AGG + chr3_2:84636976-84636995 Msa0432490:intron 20.0%
!!! AAGAGAAAGCACTAAAATTA+AGG - chr3_2:84631465-84631484 None:intergenic 25.0%
!!! TAAATGTTGTGCATTGATTA+AGG + chr3_2:84631664-84631683 Msa0432490:CDS 25.0%
!!! AAATGTTGTGCATTGATTAA+GGG + chr3_2:84631665-84631684 Msa0432490:CDS 25.0%
! AAAAGGCTTAAATGCATATT+TGG + chr3_2:84632044-84632063 Msa0432490:intron 25.0%
! GAAACCTAAAATAAACGTAA+GGG - chr3_2:84634642-84634661 None:intergenic 25.0%
! TGAAACCTAAAATAAACGTA+AGG - chr3_2:84634641-84634660 None:intergenic 25.0%
!! CGTGAAAAGTTTAAAACATA+TGG - chr3_2:84634610-84634629 None:intergenic 25.0%
!! TCATTTTGCTGAATGAATTT+TGG + chr3_2:84632472-84632491 Msa0432490:intron 25.0%
! AGTTTCAGAATGTAAAGTAT+AGG - chr3_2:84632575-84632594 None:intergenic 25.0%
! AGATATAAGGGTTTATCTAA+TGG + chr3_2:84632832-84632851 Msa0432490:intron 25.0%
! AAGAAGATTGCTAAATTAAC+TGG + chr3_2:84632920-84632939 Msa0432490:CDS 25.0%
! TAATATACGCGCTTTATATT+CGG + chr3_2:84632973-84632992 Msa0432490:intron 25.0%
! CATATTATTTACCCAGTAAA+TGG + chr3_2:84633264-84633283 Msa0432490:intron 25.0%
! AATTACTCAAAGAAAATGGA+GGG + chr3_2:84633388-84633407 Msa0432490:CDS 25.0%
! TCAAACTGATATTGAAATCA+TGG + chr3_2:84634074-84634093 Msa0432490:intron 25.0%
! GACTAAAATACAAAAGATAC+AGG + chr3_2:84634175-84634194 Msa0432490:intron 25.0%
! TAAAATACAAAAGATACAGG+TGG + chr3_2:84634178-84634197 Msa0432490:intron 25.0%
! AAAATACAAAAGATACAGGT+GGG + chr3_2:84634179-84634198 Msa0432490:intron 25.0%
!!! TTGGGATAATTCTGAAATTA+GGG - chr3_2:84634371-84634390 None:intergenic 25.0%
!!! ATTGGGATAATTCTGAAATT+AGG - chr3_2:84634372-84634391 None:intergenic 25.0%
! AAAATATAAAAGGCAAAGTC+GGG - chr3_2:84634402-84634421 None:intergenic 25.0%
!! CGTGAAAAGTTTAAAACATA+TGG + chr3_2:84634610-84634629 Msa0432490:intron 25.0%
! TGAAACCTAAAATAAACGTA+AGG + chr3_2:84634641-84634660 Msa0432490:intron 25.0%
! GAAACCTAAAATAAACGTAA+GGG + chr3_2:84634642-84634661 Msa0432490:intron 25.0%
! TTATGGCTTAAATGCATATT+TGG - chr3_2:84634669-84634688 None:intergenic 25.0%
!! AAAAAAGTTTTGCAAAGGAA+TGG + chr3_2:84634689-84634708 Msa0432490:intron 25.0%
!! TCAAAAAATCATCTTTTCCA+AGG + chr3_2:84635042-84635061 Msa0432490:intron 25.0%
!! AATTGCATTTAATTTCTCCT+TGG - chr3_2:84635062-84635081 None:intergenic 25.0%
!! TTTCTTATAATTTAGGATGG+AGG + chr3_2:84635235-84635254 Msa0432490:intron 25.0%
!! TTCTTATAATTTAGGATGGA+GGG + chr3_2:84635236-84635255 Msa0432490:intron 25.0%
!! TTATGTGGTCTTTCTTTTAA+GGG + chr3_2:84635416-84635435 Msa0432490:intron 25.0%
! TTATTAAAAAGCTTCTGAGT+TGG - chr3_2:84635507-84635526 None:intergenic 25.0%
! AGTTTCCCATATCAAATTTA+AGG + chr3_2:84635589-84635608 Msa0432490:intron 25.0%
! GTTTCCCATATCAAATTTAA+GGG + chr3_2:84635590-84635609 Msa0432490:intron 25.0%
! CATACCCTTAAATTTGATAT+GGG - chr3_2:84635597-84635616 None:intergenic 25.0%
! ACATACCCTTAAATTTGATA+TGG - chr3_2:84635598-84635617 None:intergenic 25.0%
!! TCAAATTTAAGGGTATGTTT+AGG + chr3_2:84635600-84635619 Msa0432490:intron 25.0%
! TTTAGGTAAGTTTGATTGAT+TGG - chr3_2:84635722-84635741 None:intergenic 25.0%
!!! TCCTCTTTTAAAATTGATTG+CGG - chr3_2:84635746-84635765 None:intergenic 25.0%
! AAAGTTAGTTAAAAGTGAAC+TGG + chr3_2:84635864-84635883 Msa0432490:intron 25.0%
!!! AGTATATTTTAATTTCACCG+TGG - chr3_2:84636154-84636173 None:intergenic 25.0%
!! ATTGCATGATTTTGTATGTT+TGG - chr3_2:84636270-84636289 None:intergenic 25.0%
! TTTGAATTTGAATCCTTAGA+GGG - chr3_2:84636388-84636407 None:intergenic 25.0%
!!! AAGCCAATACAATTGATTTT+TGG + chr3_2:84636607-84636626 Msa0432490:intron 25.0%
!!! AGCCAATACAATTGATTTTT+GGG + chr3_2:84636608-84636627 Msa0432490:intron 25.0%
!!! ATTTGTGTTGCCTTTAAAAT+AGG + chr3_2:84636921-84636940 Msa0432490:intron 25.0%
!!! AATGAGTGAACCTATTTTAA+AGG - chr3_2:84636934-84636953 None:intergenic 25.0%
! AATTGTTGTGCAATAATCAA+AGG + chr3_2:84637236-84637255 Msa0432490:CDS 25.0%
AATTAAGGCAGAGAATTTGT+TGG - chr3_2:84631450-84631469 None:intergenic 30.0%
!! TTCTAACGTTTTGAACGTTT+TGG - chr3_2:84634582-84634601 None:intergenic 30.0%
ATAACCTTGAACTAACAGAA+GGG - chr3_2:84634550-84634569 None:intergenic 30.0%
TATAACCTTGAACTAACAGA+AGG - chr3_2:84634549-84634568 None:intergenic 30.0%
TGTTAGTTCAAGGTTATAAC+CGG + chr3_2:84632166-84632185 Msa0432490:intron 30.0%
GGAAATGAAGGAAATTAAGA+AGG + chr3_2:84632643-84632662 Msa0432490:CDS 30.0%
GACAACAATGACAGAATTAA+AGG - chr3_2:84632780-84632799 None:intergenic 30.0%
!!! TCACTATTGGTTTTTGTCTT+GGG - chr3_2:84632802-84632821 None:intergenic 30.0%
AAAACCAATAGTGAGTATGA+TGG + chr3_2:84632808-84632827 Msa0432490:CDS 30.0%
! TGAGTATGATGGAAGATATA+AGG + chr3_2:84632819-84632838 Msa0432490:CDS 30.0%
! GAGTATGATGGAAGATATAA+GGG + chr3_2:84632820-84632839 Msa0432490:CDS 30.0%
! GCAATCTTCTTTTTGATCTT+AGG - chr3_2:84632911-84632930 None:intergenic 30.0%
TAACTGGATATAGAAATCAG+TGG + chr3_2:84632936-84632955 Msa0432490:CDS 30.0%
TTGTAATTGCATGAACACAT+GGG - chr3_2:84633164-84633183 None:intergenic 30.0%
AATTACAAGCATGCAAAAGA+AGG + chr3_2:84633176-84633195 Msa0432490:intron 30.0%
ATTACAAGCATGCAAAAGAA+GGG + chr3_2:84633177-84633196 Msa0432490:intron 30.0%
! TCTCTATTCCTCTTTTTCTT+TGG - chr3_2:84633360-84633379 None:intergenic 30.0%
AAAGAAAAAGAGGAATAGAG+AGG + chr3_2:84633359-84633378 Msa0432490:CDS 30.0%
GGTGAATTACTCAAAGAAAA+TGG + chr3_2:84633384-84633403 Msa0432490:CDS 30.0%
GAATTACTCAAAGAAAATGG+AGG + chr3_2:84633387-84633406 Msa0432490:CDS 30.0%
AAATGGAGGGTTGAATAAAA+AGG + chr3_2:84633401-84633420 Msa0432490:CDS 30.0%
AATGGAGGGTTGAATAAAAA+GGG + chr3_2:84633402-84633421 Msa0432490:CDS 30.0%
! TCTCTTAGTAAGAGATTTTC+TGG - chr3_2:84633661-84633680 None:intergenic 30.0%
AATCTCTTACTAAGAGAAAG+AGG + chr3_2:84633664-84633683 Msa0432490:CDS 30.0%
! TGTAATGCATCTTTTGTGTT+TGG + chr3_2:84633894-84633913 Msa0432490:intron 30.0%
! TGTTTAATGCCCACATATTT+TGG + chr3_2:84633920-84633939 Msa0432490:intron 30.0%
! TGTAATGCATCTTTTGTGTT+TGG + chr3_2:84633894-84633913 Msa0432490:intron 30.0%
CATGTTTAATGCCAACATAT+TGG + chr3_2:84633988-84634007 Msa0432490:intron 30.0%
CAAGATAAGTACCAATATGT+TGG - chr3_2:84634002-84634021 None:intergenic 30.0%
TGTTAGTTCAAGGTTATAAC+CGG - chr3_2:84632166-84632185 None:intergenic 30.0%
TATAACCTTGAACTAACAGA+AGG + chr3_2:84634549-84634568 Msa0432490:intron 30.0%
ATAACCTTGAACTAACAGAA+GGG + chr3_2:84634550-84634569 Msa0432490:intron 30.0%
!! TTCTAACGTTTTGAACGTTT+TGG + chr3_2:84634582-84634601 Msa0432490:intron 30.0%
TAAAACAATGACAATGACAG+TGG - chr3_2:84634736-84634755 None:intergenic 30.0%
! GTAGATTTCTTAACGTGTTT+TGG + chr3_2:84634798-84634817 Msa0432490:intron 30.0%
TTTGCTTATAATATGGGACA+AGG - chr3_2:84634987-84635006 None:intergenic 30.0%
! GTTATGTGGTCTTTCTTTTA+AGG + chr3_2:84635415-84635434 Msa0432490:intron 30.0%
!! ATGTTTAGGTTGATGGTATA+AGG + chr3_2:84635614-84635633 Msa0432490:intron 30.0%
TTAAAATTGATTGCGGCTTT+AGG - chr3_2:84635739-84635758 None:intergenic 30.0%
AAAAGTGAAATGTGTAGCTT+TGG - chr3_2:84635960-84635979 None:intergenic 30.0%
!! AAGTTGTAGTTTGTAGCTTT+TGG + chr3_2:84636192-84636211 Msa0432490:intron 30.0%
!! AGTTGTAGTTTGTAGCTTTT+GGG + chr3_2:84636193-84636212 Msa0432490:intron 30.0%
!! TTTTGGGAAAACACTGAAAA+TGG + chr3_2:84636209-84636228 Msa0432490:intron 30.0%
TTCCGCATGAGAAAAAAATA+TGG + chr3_2:84636291-84636310 Msa0432490:intron 30.0%
TCCGCATGAGAAAAAAATAT+GGG + chr3_2:84636292-84636311 Msa0432490:intron 30.0%
!!! TCCCATATTTTTTTCTCATG+CGG - chr3_2:84636296-84636315 None:intergenic 30.0%
GTTTGAATTTGAATCCTTAG+AGG - chr3_2:84636389-84636408 None:intergenic 30.0%
!!! AGTTTTGGATTTGAAAGTCA+CGG - chr3_2:84636450-84636469 None:intergenic 30.0%
! AATGATAAAACGGCAAGTTT+TGG - chr3_2:84636465-84636484 None:intergenic 30.0%
!! ATTGTATTGGCTTGATCAAA+CGG - chr3_2:84636600-84636619 None:intergenic 30.0%
CACCCAAAAATCAATTGTAT+TGG - chr3_2:84636613-84636632 None:intergenic 30.0%
CTGTAAAAGAACATGTTTGT+TGG - chr3_2:84636642-84636661 None:intergenic 30.0%
TCATCTCATAGATAAAATGG+TGG + chr3_2:84636739-84636758 Msa0432490:intron 30.0%
CATCTCATAGATAAAATGGT+GGG + chr3_2:84636740-84636759 Msa0432490:intron 30.0%
TTCCACTCAATTAGATTTCT+AGG + chr3_2:84636886-84636905 Msa0432490:intron 30.0%
AACCTAGAAATCTAATTGAG+TGG - chr3_2:84636891-84636910 None:intergenic 30.0%
TAAAGGCAACACAAATTGTA+AGG - chr3_2:84636917-84636936 None:intergenic 30.0%
AAATGTAGCAATATGTGTGT+TGG - chr3_2:84636968-84636987 None:intergenic 30.0%
TGTAAGGTAAACTATAGTCA+TGG + chr3_2:84636992-84637011 Msa0432490:intron 30.0%
TAAAATGGTGGCAAAGAATT+TGG - chr3_2:84637027-84637046 None:intergenic 30.0%
!! CTAACTTTAAGGTATCTTTG+GGG - chr3_2:84637154-84637173 None:intergenic 30.0%
!! CCTAACTTTAAGGTATCTTT+GGG - chr3_2:84637155-84637174 None:intergenic 30.0%
CCAAAGATACCTTAAAGTTA+GGG + chr3_2:84637153-84637172 Msa0432490:CDS 30.0%
CAAAGATACCTTAAAGTTAG+GGG + chr3_2:84637154-84637173 Msa0432490:CDS 30.0%
TTGTGCAATAATCAAAGGTT+TGG + chr3_2:84637241-84637260 Msa0432490:CDS 30.0%
!! CTAGCTTTAAGGTATCCTTA+GGG - chr3_2:84631583-84631602 None:intergenic 35.0%
CTAAGGATACCTTAAAGCTA+GGG + chr3_2:84631582-84631601 Msa0432490:intron 35.0%
TAAGGATACCTTAAAGCTAG+GGG + chr3_2:84631583-84631602 Msa0432490:intron 35.0%
!! GGGTTGGTTAATGTTGTTAT+TGG + chr3_2:84631623-84631642 Msa0432490:intron 35.0%
AACATTTACTACCTGAAGGA+GGG - chr3_2:84631652-84631671 None:intergenic 35.0%
!! TTGTGCATTGATTAAGGGTT+TGG + chr3_2:84631670-84631689 Msa0432490:CDS 35.0%
CAACCTAATTGGAATCCTTA+GGG - chr3_2:84631830-84631849 None:intergenic 35.0%
ACAACCTAATTGGAATCCTT+AGG - chr3_2:84631831-84631850 None:intergenic 35.0%
ACAATGAGACACAACCTAAT+TGG - chr3_2:84631841-84631860 None:intergenic 35.0%
!! TGGTCCCTTACGTTTATTTT+AGG + chr3_2:84632064-84632083 Msa0432490:intron 35.0%
ATAACCACACTGAAAGCTAT+CGG + chr3_2:84632324-84632343 Msa0432490:CDS 35.0%
!! ACATTCTGAAACTGTTGATG+TGG + chr3_2:84632582-84632601 Msa0432490:intron 35.0%
GGAAATTAAGAAGGTCAATC+TGG + chr3_2:84632652-84632671 Msa0432490:CDS 35.0%
TTTAACAGTGTGTCACATTG+AGG - chr3_2:84632743-84632762 None:intergenic 35.0%
!!! CTCACTATTGGTTTTTGTCT+TGG - chr3_2:84632803-84632822 None:intergenic 35.0%
TCTTCCATCATACTCACTAT+TGG - chr3_2:84632815-84632834 None:intergenic 35.0%
TAAGGGTTTATCTAATGGAG+AGG + chr3_2:84632837-84632856 Msa0432490:intron 35.0%
TGGAGAGGTGGTATAAAAAT+AGG + chr3_2:84632852-84632871 Msa0432490:intron 35.0%
GGAGAGGTGGTATAAAAATA+GGG + chr3_2:84632853-84632872 Msa0432490:intron 35.0%
! GAGAAAAGTGCATTGTATGA+AGG + chr3_2:84632875-84632894 Msa0432490:CDS 35.0%
AAATGTTATTGTAGGCCTTC+TGG + chr3_2:84633033-84633052 Msa0432490:intron 35.0%
GTAAGACATTTGACAATGAC+AGG + chr3_2:84633072-84633091 Msa0432490:intron 35.0%
GAGAATGCAGTTGTAGAAAA+TGG + chr3_2:84633124-84633143 Msa0432490:intron 35.0%
CTTGTAATTGCATGAACACA+TGG - chr3_2:84633165-84633184 None:intergenic 35.0%
AGGGATTGAAGCAAAAATGT+AGG + chr3_2:84633421-84633440 Msa0432490:CDS 35.0%
GATTGAAGCAAAAATGTAGG+AGG + chr3_2:84633424-84633443 Msa0432490:CDS 35.0%
!! GTAAGAGATTTTCTGGTGAT+AGG - chr3_2:84633654-84633673 None:intergenic 35.0%
! TCTTTCCTGCTTCTTTTGAT+TGG - chr3_2:84633732-84633751 None:intergenic 35.0%
! CAACTCTTGGTGGTTTAAAA+GGG - chr3_2:84633788-84633807 None:intergenic 35.0%
! TGTTGCATCTATGCATCTTT+TGG + chr3_2:84634033-84634052 Msa0432490:intron 35.0%
! GTTGCATCTATGCATCTTTT+GGG + chr3_2:84634034-84634053 Msa0432490:intron 35.0%
AAGATGACGATTCGACTTTA+AGG + chr3_2:84634268-84634287 Msa0432490:intron 35.0%
ATGAACAGCTGTTCGAATTT+GGG + chr3_2:84634327-84634346 Msa0432490:intron 35.0%
!! TGGTCCCTTACGTTTATTTT+AGG - chr3_2:84632064-84632083 None:intergenic 35.0%
! TGCTTATAATTTGGGACAGA+GGG - chr3_2:84634949-84634968 None:intergenic 35.0%
! TTGCTTATAATTTGGGACAG+AGG - chr3_2:84634950-84634969 None:intergenic 35.0%
! TCCTGTTTTACTAAGTAGCT+TGG + chr3_2:84635308-84635327 Msa0432490:intron 35.0%
TCCAAGCTACTTAGTAAAAC+AGG - chr3_2:84635312-84635331 None:intergenic 35.0%
! AAAAAGCTTCTGAGTTGGAT+TGG - chr3_2:84635502-84635521 None:intergenic 35.0%
!! TAAGGGTATGTTTAGGTTGA+TGG + chr3_2:84635607-84635626 Msa0432490:intron 35.0%
!! TTTAGGTTGATGGTATAAGG+TGG + chr3_2:84635617-84635636 Msa0432490:intron 35.0%
GAAATAGAGCTGAGTGAAAT+AGG - chr3_2:84635698-84635717 None:intergenic 35.0%
!! GCCGCAATCAATTTTAAAAG+AGG + chr3_2:84635742-84635761 Msa0432490:intron 35.0%
AAAGTGAACTGGACTATGTT+TGG + chr3_2:84635875-84635894 Msa0432490:intron 35.0%
TGGAAACAAACATGCATCTA+AGG - chr3_2:84636134-84636153 None:intergenic 35.0%
TAGATGCATGTTTGTTTCCA+CGG + chr3_2:84636134-84636153 Msa0432490:intron 35.0%
GAAAACACTGAAAATGGTTG+TGG + chr3_2:84636215-84636234 Msa0432490:intron 35.0%
!! ATATGGGACATCGATTTCTA+TGG + chr3_2:84636308-84636327 Msa0432490:intron 35.0%
AATGCAAAGAAAACCCTCTA+AGG + chr3_2:84636372-84636391 Msa0432490:intron 35.0%
! AGAAGTTTTCTCCACTTTCA+TGG - chr3_2:84636418-84636437 None:intergenic 35.0%
!! TCATAGATAAAATGGTGGGT+GGG + chr3_2:84636744-84636763 Msa0432490:intron 35.0%
! TTTGTGATAACGTTTCCAGT+CGG - chr3_2:84636857-84636876 None:intergenic 35.0%
!! AAGGAGAGAGAGTACTAAAA+TGG - chr3_2:84637042-84637061 None:intergenic 35.0%
CAGTAAATGTTGAGTAAGCA+AGG - chr3_2:84637061-84637080 None:intergenic 35.0%
TGCTTACTCAACATTTACTG+AGG + chr3_2:84637061-84637080 Msa0432490:CDS 35.0%
TCAACATTTACTGAGGCTAA+GGG + chr3_2:84637068-84637087 Msa0432490:CDS 35.0%
CCCAAAGATACCTTAAAGTT+AGG + chr3_2:84637152-84637171 Msa0432490:CDS 35.0%
!! CCCTAACTTTAAGGTATCTT+TGG - chr3_2:84637156-84637175 None:intergenic 35.0%
! GACTGGTTAATGTTGTTGTT+GGG + chr3_2:84637195-84637214 Msa0432490:CDS 35.0%
AATCAAAGGTTTGGCTGATT+TGG + chr3_2:84637250-84637269 Msa0432490:CDS 35.0%
TTGTCTTTGCACTGCAATTA+AGG + chr3_2:84637283-84637302 Msa0432490:CDS 35.0%
!!! TTGTTTTTTGACAAGCACCA+AGG - chr3_2:84637358-84637377 None:intergenic 35.0%
!! TGATGGTGGACAATTAGCTT+CGG - chr3_2:84631507-84631526 None:intergenic 40.0%
!! CCTAGCTTTAAGGTATCCTT+AGG - chr3_2:84631584-84631603 None:intergenic 40.0%
CCTAAGGATACCTTAAAGCT+AGG + chr3_2:84631581-84631600 Msa0432490:intron 40.0%
!! GGGTTTGTGCTGATCTTTTA+GGG + chr3_2:84631603-84631622 Msa0432490:intron 40.0%
!!! TTGTGCTGATCTTTTAGGGT+TGG + chr3_2:84631607-84631626 Msa0432490:intron 40.0%
CAACATTTACTACCTGAAGG+AGG - chr3_2:84631653-84631672 None:intergenic 40.0%
GCACAACATTTACTACCTGA+AGG - chr3_2:84631656-84631675 None:intergenic 40.0%
GATTAAGGGTTTGGCTGATT+TGG + chr3_2:84631679-84631698 Msa0432490:CDS 40.0%
TTGTCTTTGCACTGCACTTA+AGG + chr3_2:84631712-84631731 Msa0432490:CDS 40.0%
!!! CGGTTTTTTGACATGCACTA+AGG - chr3_2:84631787-84631806 None:intergenic 40.0%
ATTGGAATCCTTAGGGACAT+TGG - chr3_2:84631823-84631842 None:intergenic 40.0%
TGTCCCTAAGGATTCCAATT+AGG + chr3_2:84631824-84631843 Msa0432490:intron 40.0%
TTCTCAGAGGTTAATTGCGA+CGG + chr3_2:84632418-84632437 Msa0432490:intron 40.0%
! TCTGAAACTGTTGATGTGGA+AGG + chr3_2:84632586-84632605 Msa0432490:intron 40.0%
TGAAAATACCACCTAGACAC+TGG + chr3_2:84632693-84632712 Msa0432490:CDS 40.0%
AGTGTGTCACATTGAGGATT+TGG - chr3_2:84632737-84632756 None:intergenic 40.0%
ATAGAAATCAGTGGCTAGCA+AGG + chr3_2:84632945-84632964 Msa0432490:CDS 40.0%
ACACAGACTGACCATTTACT+GGG - chr3_2:84633278-84633297 None:intergenic 40.0%
AGTAAATGGTCAGTCTGTGT+GGG + chr3_2:84633278-84633297 Msa0432490:intron 40.0%
AAAAAGAGGAATAGAGAGGC+AGG + chr3_2:84633363-84633382 Msa0432490:CDS 40.0%
!! AGAGATTTTCTGGTGATAGG+TGG - chr3_2:84633651-84633670 None:intergenic 40.0%
GGTTTAAAAGGGATAGTTGG+TGG - chr3_2:84633777-84633796 None:intergenic 40.0%
GGTGGTTTAAAAGGGATAGT+TGG - chr3_2:84633780-84633799 None:intergenic 40.0%
! GCAACTCTTGGTGGTTTAAA+AGG - chr3_2:84633789-84633808 None:intergenic 40.0%
ACCCAACGATTTCCAATCAT+AGG + chr3_2:84634212-84634231 Msa0432490:intron 40.0%
GCCTATGATTGGAAATCGTT+GGG - chr3_2:84634216-84634235 None:intergenic 40.0%
TGCCTATGATTGGAAATCGT+TGG - chr3_2:84634217-84634236 None:intergenic 40.0%
TCCAATCATAGGCACATCAT+TGG + chr3_2:84634223-84634242 Msa0432490:intron 40.0%
TCCAATGATGTGCCTATGAT+TGG - chr3_2:84634227-84634246 None:intergenic 40.0%
AATCATAGGCACATCATTGG+AGG + chr3_2:84634226-84634245 Msa0432490:intron 40.0%
TTCGAACAGCTGTTCATCAA+TGG - chr3_2:84634324-84634343 None:intergenic 40.0%
GATGAACAGCTGTTCGAATT+TGG + chr3_2:84634326-84634345 Msa0432490:intron 40.0%
TGAACAGCTGTTCGAATTTG+GGG + chr3_2:84634328-84634347 Msa0432490:intron 40.0%
AAAAGGCAAAGTCGGGAATT+GGG - chr3_2:84634395-84634414 None:intergenic 40.0%
TAAAAGGCAAAGTCGGGAAT+TGG - chr3_2:84634396-84634415 None:intergenic 40.0%
!! TCTTTCTTTTAAGGGCGAAG+TGG + chr3_2:84635424-84635443 Msa0432490:intron 40.0%
ATTGTTGAAGCCAAAACACG+CGG - chr3_2:84635793-84635812 None:intergenic 40.0%
! CTCATAGATAAAATGGTGGG+TGG + chr3_2:84636743-84636762 Msa0432490:intron 40.0%
ACAAATGAGAAAAGGCCCAT+AGG + chr3_2:84636777-84636796 Msa0432490:intron 40.0%
TTGGATGATACAGAGCCTAT+GGG - chr3_2:84636795-84636814 None:intergenic 40.0%
TTTGGATGATACAGAGCCTA+TGG - chr3_2:84636796-84636815 None:intergenic 40.0%
!! AAGCTTACAAAAGTACCGAC+TGG + chr3_2:84636839-84636858 Msa0432490:intron 40.0%
!! CAATATGTGTGTTGGTTGAG+AGG - chr3_2:84636960-84636979 None:intergenic 40.0%
!! GAGAGAGAGTACTAAAATGG+TGG - chr3_2:84637039-84637058 None:intergenic 40.0%
CTCAACATTTACTGAGGCTA+AGG + chr3_2:84637067-84637086 Msa0432490:CDS 40.0%
AGCACAAACCCCTAACTTTA+AGG - chr3_2:84637165-84637184 None:intergenic 40.0%
!!! TTGTGCTGATGTTTTAGGAC+TGG + chr3_2:84637178-84637197 Msa0432490:CDS 40.0%
!! GGACTGGTTAATGTTGTTGT+TGG + chr3_2:84637194-84637213 Msa0432490:CDS 40.0%
CAACAATTACTACCTGAAGC+AGG - chr3_2:84637224-84637243 None:intergenic 40.0%
CAAGTTTATTCCGAGCACAT+TGG - chr3_2:84637309-84637328 None:intergenic 40.0%
TGTCAAAAAACAATCCCTCC+TGG + chr3_2:84637365-84637384 Msa0432490:CDS 40.0%
AGCTTCGGTGAATGTTGAGT+AGG - chr3_2:84631492-84631511 None:intergenic 45.0%
!! TCCTTAGGGCATTGACCTTT+GGG - chr3_2:84631569-84631588 None:intergenic 45.0%
!! ATCCTTAGGGCATTGACCTT+TGG - chr3_2:84631570-84631589 None:intergenic 45.0%
!! AGCACAAACCCCTAGCTTTA+AGG - chr3_2:84631594-84631613 None:intergenic 45.0%
!! GGGGTTTGTGCTGATCTTTT+AGG + chr3_2:84631602-84631621 Msa0432490:intron 45.0%
GTTATTGGAAACCCTCCTTC+AGG + chr3_2:84631638-84631657 Msa0432490:intron 45.0%
!! TAAGGGTTTGGCTGATTTGG+AGG + chr3_2:84631682-84631701 Msa0432490:CDS 45.0%
GCACTTAAGGCTAATGTGCT+TGG + chr3_2:84631725-84631744 Msa0432490:CDS 45.0%
TCGTCCCTTCTGTTAGTTCA+AGG + chr3_2:84632156-84632175 Msa0432490:intron 45.0%
AACAGTCTGGAGAGAACGAA+AGG + chr3_2:84632280-84632299 Msa0432490:intron 45.0%
ACAGTCTGGAGAGAACGAAA+GGG + chr3_2:84632281-84632300 Msa0432490:intron 45.0%
TTCTCCGATAGCTTTCAGTG+TGG - chr3_2:84632331-84632350 None:intergenic 45.0%
TATCGGAGAAGCTTCTTCGA+CGG + chr3_2:84632341-84632360 Msa0432490:CDS 45.0%
CGGCGATTGAAAGCTATTGA+AGG + chr3_2:84632386-84632405 Msa0432490:intron 45.0%
GCGATTTCTCAGAGGAATTC+AGG + chr3_2:84632440-84632459 Msa0432490:intron 45.0%
ATATCCACAAGCCTGGGAAA+GGG + chr3_2:84632622-84632641 Msa0432490:CDS 45.0%
TTCCTTCATTTCCCTTTCCC+AGG - chr3_2:84632636-84632655 None:intergenic 45.0%
GGGTTTATCTAATGGAGAGG+TGG + chr3_2:84632840-84632859 Msa0432490:intron 45.0%
!! CATGCAAAAGAAGGGTGTCA+AGG + chr3_2:84633185-84633204 Msa0432490:intron 45.0%
!! AAAGAAGGGTGTCAAGGTTG+AGG + chr3_2:84633191-84633210 Msa0432490:intron 45.0%
TGTACCAGACTGCTTCAAGA+AGG + chr3_2:84633218-84633237 Msa0432490:intron 45.0%
GTTTCCTTCTTGAAGCAGTC+TGG - chr3_2:84633225-84633244 None:intergenic 45.0%
CACACAGACTGACCATTTAC+TGG - chr3_2:84633279-84633298 None:intergenic 45.0%
CAGTAAATGGTCAGTCTGTG+TGG + chr3_2:84633277-84633296 Msa0432490:intron 45.0%
CTTCCAGGTTGTCTCCTAAT+GGG - chr3_2:84633336-84633355 None:intergenic 45.0%
!! CTCTTTTTCTTTGGCCTTCC+AGG - chr3_2:84633351-84633370 None:intergenic 45.0%
CTGGAAGGCCAAAGAAAAAG+AGG + chr3_2:84633349-84633368 Msa0432490:CDS 45.0%
!! TAGCTTTATTGTGCCCAGGT+TGG - chr3_2:84633455-84633474 None:intergenic 45.0%
!! CATGTAGCTTTATTGTGCCC+AGG - chr3_2:84633459-84633478 None:intergenic 45.0%
!! GATTTTCTGGTGATAGGTGG+TGG - chr3_2:84633648-84633667 None:intergenic 45.0%
CTCAGCCAACAACTGTCTTA+AGG + chr3_2:84633700-84633719 Msa0432490:intron 45.0%
AGCCAACAACTGTCTTAAGG+AGG + chr3_2:84633703-84633722 Msa0432490:intron 45.0%
GACCTCCTTAAGACAGTTGT+TGG - chr3_2:84633708-84633727 None:intergenic 45.0%
GGTCTCCAATCAAAAGAAGC+AGG + chr3_2:84633724-84633743 Msa0432490:CDS 45.0%
AAGAAGCAGGAAAGAAGACC+AGG + chr3_2:84633737-84633756 Msa0432490:CDS 45.0%
!!! ATTTTCCATGGTGCTGCCTT+TGG - chr3_2:84633825-84633844 None:intergenic 45.0%
ACTGCTTGCAGAGTTCGAAT+TGG + chr3_2:84634295-84634314 Msa0432490:intron 45.0%
CAAAGTCGGGAATTGGGATT+GGG - chr3_2:84634389-84634408 None:intergenic 45.0%
TCGTCCCTTCTGTTAGTTCA+AGG - chr3_2:84632156-84632175 None:intergenic 45.0%
TGCTGAACGCACGTAACATT+TGG - chr3_2:84634916-84634935 None:intergenic 45.0%
! CAAACACTAACCGCGTGTTT+TGG + chr3_2:84635780-84635799 Msa0432490:intron 45.0%
!! TTCGCTTAGCTTGCAAGTCA+CGG - chr3_2:84636244-84636263 None:intergenic 45.0%
TTCTCCACTTTCATGGCGTT+GGG - chr3_2:84636411-84636430 None:intergenic 45.0%
TTTCTCCACTTTCATGGCGT+TGG - chr3_2:84636412-84636431 None:intergenic 45.0%
!! GGTGGCAAAGAATTTGGTGT+TGG - chr3_2:84637021-84637040 None:intergenic 45.0%
!! TTTGGCTTTGGCTTTGGTGA+TGG - chr3_2:84637104-84637123 None:intergenic 45.0%
!! GGGGTTTGTGCTGATGTTTT+AGG + chr3_2:84637173-84637192 Msa0432490:CDS 45.0%
GCAATTAAGGCCAATGTGCT+CGG + chr3_2:84637296-84637315 Msa0432490:CDS 45.0%
AGGCACATTGAAAACCAGGA+GGG - chr3_2:84637382-84637401 None:intergenic 45.0%
TAGGCACATTGAAAACCAGG+AGG - chr3_2:84637383-84637402 None:intergenic 45.0%
!! TATAAACTTAAAAATATAAA+AGG - chr3_2:84634412-84634431 None:intergenic 5.0%
!! TCATTTAATAATTAAAAAAA+AGG - chr3_2:84634438-84634457 None:intergenic 5.0%
!!! ATTTTTTTTTCTTATAATTT+AGG + chr3_2:84635228-84635247 Msa0432490:intron 5.0%
!! GAAGGTGTTGGCTTTGGTGA+TGG - chr3_2:84631524-84631543 None:intergenic 50.0%
CATTGACCTTTGGGTGAAGG+TGG - chr3_2:84631560-84631579 None:intergenic 50.0%
ACCCAAAGGTCAATGCCCTA+AGG + chr3_2:84631565-84631584 Msa0432490:intron 50.0%
TGTCAAAAAACCGTCCCTCC+TGG + chr3_2:84631794-84631813 Msa0432490:CDS 50.0%
ACATTGGAAACCAGGAGGGA+CGG - chr3_2:84631807-84631826 None:intergenic 50.0%
AGGGACATTGGAAACCAGGA+GGG - chr3_2:84631811-84631830 None:intergenic 50.0%
TAGGGACATTGGAAACCAGG+AGG - chr3_2:84631812-84631831 None:intergenic 50.0%
CCTTAGGGACATTGGAAACC+AGG - chr3_2:84631815-84631834 None:intergenic 50.0%
CCTGGTTTCCAATGTCCCTA+AGG + chr3_2:84631812-84631831 Msa0432490:intron 50.0%
CAAGGTTATAACCGGACACC+TGG + chr3_2:84632174-84632193 Msa0432490:intron 50.0%
ATAACCGGACACCTGGCAAA+CGG + chr3_2:84632181-84632200 Msa0432490:intron 50.0%
CAGTCTGGAGAGAACGAAAG+GGG + chr3_2:84632282-84632301 Msa0432490:intron 50.0%
TGGAGAGAACGAAAGGGGAT+AGG + chr3_2:84632287-84632306 Msa0432490:CDS 50.0%
GGAGAGAACGAAAGGGGATA+GGG + chr3_2:84632288-84632307 Msa0432490:CDS 50.0%
ATAGCTTTCAATCGCCGTCG+CGG - chr3_2:84632383-84632402 None:intergenic 50.0%
AAGGTTCTGCGAGTTCTCAG+AGG + chr3_2:84632405-84632424 Msa0432490:intron 50.0%
GGCTTGTGGATATGAAGCCT+TGG - chr3_2:84632615-84632634 None:intergenic 50.0%
AGGCTTCATATCCACAAGCC+TGG + chr3_2:84632615-84632634 Msa0432490:CDS 50.0%
GGCTTCATATCCACAAGCCT+GGG + chr3_2:84632616-84632635 Msa0432490:CDS 50.0%
CATATCCACAAGCCTGGGAA+AGG + chr3_2:84632621-84632640 Msa0432490:CDS 50.0%
ATTTCCCTTTCCCAGGCTTG+TGG - chr3_2:84632629-84632648 None:intergenic 50.0%
AGCCTGGGAAAGGGAAATGA+AGG + chr3_2:84632631-84632650 Msa0432490:CDS 50.0%
TACCACCTAGACACTGGACT+AGG + chr3_2:84632699-84632718 Msa0432490:CDS 50.0%
ACCACCTAGACACTGGACTA+GGG + chr3_2:84632700-84632719 Msa0432490:CDS 50.0%
ATTGTAGGCCTTCTGGTGAG+TGG + chr3_2:84633040-84633059 Msa0432490:intron 50.0%
! TCATAGTGCCACTCACCAGA+AGG - chr3_2:84633051-84633070 None:intergenic 50.0%
CCTTCCAGGTTGTCTCCTAA+TGG - chr3_2:84633337-84633356 None:intergenic 50.0%
CCATTAGGAGACAACCTGGA+AGG + chr3_2:84633334-84633353 Msa0432490:CDS 50.0%
! TGTAGGAGGTGTAACCAACC+TGG + chr3_2:84633438-84633457 Msa0432490:CDS 50.0%
! GTAGGAGGTGTAACCAACCT+GGG + chr3_2:84633439-84633458 Msa0432490:CDS 50.0%
! TGAGTTGCTGGTTGTGGTTG+AGG - chr3_2:84633504-84633523 None:intergenic 50.0%
! TGTGAAGGTGGTGGTTGAGT+AGG - chr3_2:84633546-84633565 None:intergenic 50.0%
! TGTGAAGGTGGTGGTTGAGT+AGG - chr3_2:84633546-84633565 None:intergenic 50.0%
! ATAGGTGGTGGTTGAGTTGC+TGG - chr3_2:84633636-84633655 None:intergenic 50.0%
! GACAGTTGTTGGCTGAGATG+AGG - chr3_2:84633697-84633716 None:intergenic 50.0%
AGAAGACCAGGTTCCACGAA+AGG + chr3_2:84633749-84633768 Msa0432490:intron 50.0%
!! ATAGTTGGTGGTGCCTTTCG+TGG - chr3_2:84633765-84633784 None:intergenic 50.0%
CACATCATTGGAGGTCGATC+TGG + chr3_2:84634235-84634254 Msa0432490:intron 50.0%
TGGAGGTCGATCTGGAAGAA+CGG + chr3_2:84634243-84634262 Msa0432490:intron 50.0%
GCAAAGTCGGGAATTGGGAT+TGG - chr3_2:84634390-84634409 None:intergenic 50.0%
ATAACCGGACACCTGGCAAA+CGG - chr3_2:84632181-84632200 None:intergenic 50.0%
CAAGGTTATAACCGGACACC+TGG - chr3_2:84632174-84632193 None:intergenic 50.0%
TTAAGGGCGAAGTGGTAGCA+CGG + chr3_2:84635432-84635451 Msa0432490:intron 50.0%
!! TCGCTTAGCTTGCAAGTCAC+GGG - chr3_2:84636243-84636262 None:intergenic 50.0%
CAAACCCAACGCCATGAAAG+TGG + chr3_2:84636404-84636423 Msa0432490:intron 50.0%
!! GTTGGCTTTGGCTTTGGCTT+TGG - chr3_2:84637110-84637129 None:intergenic 50.0%
!! GAAGGTGTTGGCTTTGGCTT+TGG - chr3_2:84637116-84637135 None:intergenic 50.0%
!! ATCTTTGGGGCAGTGACCTT+GGG - chr3_2:84637141-84637160 None:intergenic 50.0%
!! TATCTTTGGGGCAGTGACCT+TGG - chr3_2:84637142-84637161 None:intergenic 50.0%
GTTGTTGGGAATCCTGCTTC+AGG + chr3_2:84637209-84637228 Msa0432490:CDS 50.0%
TTGACAAGCACCAAGGATCC+AGG - chr3_2:84637351-84637370 None:intergenic 50.0%
!! GGTGTTGGCTTTGGTGATGG+TGG - chr3_2:84631521-84631540 None:intergenic 55.0%
!! GCAGGTGAAGGTGTTGGCTT+TGG - chr3_2:84631530-84631549 None:intergenic 55.0%
! ACAGGAGCAGGTGAAGGTGT+TGG - chr3_2:84631536-84631555 None:intergenic 55.0%
CCTTTGGGTGAAGGTGGAAC+AGG - chr3_2:84631554-84631573 None:intergenic 55.0%
CCTGTTCCACCTTCACCCAA+AGG + chr3_2:84631551-84631570 Msa0432490:CDS 55.0%
!! GGGCATTGACCTTTGGGTGA+AGG - chr3_2:84631563-84631582 None:intergenic 55.0%
GGAGAAGCTTCTTCGACGGA+CGG + chr3_2:84632345-84632364 Msa0432490:CDS 55.0%
CTTCTTCGACGGACGGAAAG+TGG + chr3_2:84632352-84632371 Msa0432490:CDS 55.0%
TTGCGACGGCGATTTCTCAG+AGG + chr3_2:84632432-84632451 Msa0432490:intron 55.0%
GTTGATGTGGAAGGCTGCCA+AGG + chr3_2:84632595-84632614 Msa0432490:intron 55.0%
CATGCCCTAGTCCAGTGTCT+AGG - chr3_2:84632707-84632726 None:intergenic 55.0%
! CTAGACACTGGACTAGGGCA+TGG + chr3_2:84632705-84632724 Msa0432490:CDS 55.0%
ACTTGCAGCCACCACCCATT+AGG + chr3_2:84633319-84633338 Msa0432490:CDS 55.0%
! GGTTGTCTCCTAATGGGTGG+TGG - chr3_2:84633330-84633349 None:intergenic 55.0%
CCAGGTTGTCTCCTAATGGG+TGG - chr3_2:84633333-84633352 None:intergenic 55.0%
CCACCCATTAGGAGACAACC+TGG + chr3_2:84633330-84633349 Msa0432490:CDS 55.0%
!! TGTGGTTGAGGTGGTAGTGG+AGG - chr3_2:84633492-84633511 None:intergenic 55.0%
GGTTGTGGTTGAGGTGGTAG+TGG - chr3_2:84633495-84633514 None:intergenic 55.0%
! GTTGCTGGTTGTGGTTGAGG+TGG - chr3_2:84633501-84633520 None:intergenic 55.0%
AGTAGGTGGCTGTGAAGGTG+GGG - chr3_2:84633529-84633548 None:intergenic 55.0%
GAGTAGGTGGCTGTGAAGGT+GGG - chr3_2:84633530-84633549 None:intergenic 55.0%
TGAGTAGGTGGCTGTGAAGG+TGG - chr3_2:84633531-84633550 None:intergenic 55.0%
GGTTGAGTAGGTGGCTGTGA+AGG - chr3_2:84633534-84633553 None:intergenic 55.0%
! GAAGGTGGTGGTTGAGTAGG+TGG - chr3_2:84633543-84633562 None:intergenic 55.0%
! TGAGTTGCTGGCTGTGAAGG+TGG - chr3_2:84633558-84633577 None:intergenic 55.0%
! GGTTGAGTTGCTGGCTGTGA+AGG - chr3_2:84633561-84633580 None:intergenic 55.0%
! TGAGGTGGTGGTTGAGTTGC+TGG - chr3_2:84633570-84633589 None:intergenic 55.0%
! TGTGAAGGTGGTGGTTGAGG+TGG - chr3_2:84633585-84633604 None:intergenic 55.0%
TGAGTAGGTGGCTGTGAAGG+TGG - chr3_2:84633531-84633550 None:intergenic 55.0%
GGTTGAGTAGGTGGCTGTGA+AGG - chr3_2:84633534-84633553 None:intergenic 55.0%
! GAAGGTGGTGGTTGAGTAGG+TGG - chr3_2:84633543-84633562 None:intergenic 55.0%
! TGAGTTGCTGGCTGTGAAGG+TGG - chr3_2:84633558-84633577 None:intergenic 55.0%
! GGTTGAGTTGCTGGCTGTGA+AGG - chr3_2:84633561-84633580 None:intergenic 55.0%
GTTGGCTGAGATGAGGCTTC+TGG - chr3_2:84633690-84633709 None:intergenic 55.0%
GCTGTTGGTGCAACTCTTGG+TGG - chr3_2:84633798-84633817 None:intergenic 55.0%
!! GGTGCTGTTGGTGCAACTCT+TGG - chr3_2:84633801-84633820 None:intergenic 55.0%
TGCACCAACAGCACCACCAA+AGG + chr3_2:84633806-84633825 Msa0432490:intron 55.0%
!! TTCCATGGTGCTGCCTTTGG+TGG - chr3_2:84633822-84633841 None:intergenic 55.0%
!! TGGGGTGAAGGTGTTGGCTT+TGG - chr3_2:84637122-84637141 None:intergenic 55.0%
AAGCCAACACCTTCACCCCA+AGG + chr3_2:84637122-84637141 Msa0432490:CDS 55.0%
! TGACCTTGGGGTGAAGGTGT+TGG - chr3_2:84637128-84637147 None:intergenic 55.0%
!! TCTTTGGGGCAGTGACCTTG+GGG - chr3_2:84637140-84637159 None:intergenic 55.0%
ATGTACCTATCGCCCTCACC+TGG + chr3_2:84637330-84637349 Msa0432490:CDS 55.0%
AGCACCAAGGATCCAGGTGA+GGG - chr3_2:84637345-84637364 None:intergenic 55.0%
AAGCACCAAGGATCCAGGTG+AGG - chr3_2:84637346-84637365 None:intergenic 55.0%
GGTGGAACAGGAGCAGGTGA+AGG - chr3_2:84631542-84631561 None:intergenic 60.0%
GGTGAAGGTGGAACAGGAGC+AGG - chr3_2:84631548-84631567 None:intergenic 60.0%
! AGGAGCACGCTGAGCGTGAT+AGG - chr3_2:84631767-84631786 None:intergenic 60.0%
ACGTATGCACGCCGTTTGCC+AGG - chr3_2:84634518-84634537 None:intergenic 60.0%
TGGCAAACGGCGTGCATACG+TGG + chr3_2:84632194-84632213 Msa0432490:intron 60.0%
GGAAAGTGGTGCTTCCGCGA+CGG + chr3_2:84632366-84632385 Msa0432490:intron 60.0%
GCCCTAGTCCAGTGTCTAGG+TGG - chr3_2:84632704-84632723 None:intergenic 60.0%
!! GGTTGAGGTGGTAGTGGAGG+AGG - chr3_2:84633489-84633508 None:intergenic 60.0%
! GGGGGTTGAGTTGCTGGTTG+TGG - chr3_2:84633510-84633529 None:intergenic 60.0%
! GAAGGTGGGGGTTGAGTTGC+TGG - chr3_2:84633516-84633535 None:intergenic 60.0%
GTAGGTGGCTGTGAAGGTGG+GGG - chr3_2:84633528-84633547 None:intergenic 60.0%
! GTTGCTGGCTGTGAAGGTGG+TGG - chr3_2:84633555-84633574 None:intergenic 60.0%
! GAAGGTGGTGGTTGAGGTGG+TGG - chr3_2:84633582-84633601 None:intergenic 60.0%
! GGCTGTGAAGGTGGTGGTTG+AGG - chr3_2:84633549-84633568 None:intergenic 60.0%
GTAGGTGGCTGTGAAGGTGG+TGG - chr3_2:84633528-84633547 None:intergenic 60.0%
! GTTGCTGGCTGTGAAGGTGG+TGG - chr3_2:84633555-84633574 None:intergenic 60.0%
GTGGTGCCTTTCGTGGAACC+TGG - chr3_2:84633758-84633777 None:intergenic 60.0%
!! GCTGCCTTTGGTGGTGCTGT+TGG - chr3_2:84633813-84633832 None:intergenic 60.0%
CACCACCAAAGGCAGCACCA+TGG + chr3_2:84633817-84633836 Msa0432490:intron 60.0%
TGGCAAACGGCGTGCATACG+TGG - chr3_2:84632194-84632213 None:intergenic 60.0%
ACGTATGCACGCCGTTTGCC+AGG + chr3_2:84634518-84634537 Msa0432490:intron 60.0%
AGGATCCAGGTGAGGGCGAT+AGG - chr3_2:84637338-84637357 None:intergenic 60.0%
ATCGCCCTCACCTGGATCCT+TGG + chr3_2:84637338-84637357 Msa0432490:CDS 60.0%
CACGCCGTTTGCCAGGTGTC+CGG - chr3_2:84634525-84634544 None:intergenic 65.0%
CACGCCGTTTGCCAGGTGTC+CGG + chr3_2:84634525-84634544 Msa0432490:intron 65.0%
GGGCAGTGACCTTGGGGTGA+AGG - chr3_2:84637134-84637153 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84631440 84637403 84631440 ID=Msa0432490;Name=Msa0432490
chr3_2 mRNA 84631440 84637403 84631440 ID=Msa0432490-mRNA-1;Parent=Msa0432490;Name=Msa0432490-mRNA-1;_AED=0.17;_eAED=0.24;_QI=0|0|0|1|0.28|0.25|8|0|518
chr3_2 exon 84631440 84631572 84631440 ID=Msa0432490-mRNA-1:exon:23974;Parent=Msa0432490-mRNA-1
chr3_2 exon 84631660 84631815 84631660 ID=Msa0432490-mRNA-1:exon:23975;Parent=Msa0432490-mRNA-1
chr3_2 exon 84632285 84632373 84632285 ID=Msa0432490-mRNA-1:exon:23976;Parent=Msa0432490-mRNA-1
chr3_2 exon 84632608 84632841 84632608 ID=Msa0432490-mRNA-1:exon:23977;Parent=Msa0432490-mRNA-1
chr3_2 exon 84632857 84632966 84632857 ID=Msa0432490-mRNA-1:exon:23978;Parent=Msa0432490-mRNA-1
chr3_2 exon 84633311 84633713 84633311 ID=Msa0432490-mRNA-1:exon:23979;Parent=Msa0432490-mRNA-1
chr3_2 exon 84633722 84633758 84633722 ID=Msa0432490-mRNA-1:exon:23980;Parent=Msa0432490-mRNA-1
chr3_2 exon 84637009 84637403 84637009 ID=Msa0432490-mRNA-1:exon:23981;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84631440 84631572 84631440 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84631660 84631815 84631660 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84632285 84632373 84632285 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84632608 84632841 84632608 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84632857 84632966 84632857 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84633311 84633713 84633311 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84633722 84633758 84633722 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
chr3_2 CDS 84637009 84637403 84637009 ID=Msa0432490-mRNA-1:cds;Parent=Msa0432490-mRNA-1
Gene Sequence

>Msa0432490

ATGGCTTCCAACAAATTCTCTGCCTTAATTTTAGTGCTTTCTCTTCTTGCCTACTCAACATTCACCGAAGCTAATTGTCCACCATCACCAAAGCCAACACCTTCACCTGCTCCTGTTCCACCTTCACCCAAAGGTAGTAAATGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAGGCTGCACTTTGTCTTTGCACTGCACTTAAGGCTAATGTGCTTGGAATCAACTTGAACGTGCCTATCACGCTCAGCGTGCTCCTTAGTGCATGTCAAAAAACCGTCCCTCCTGTCTGGAGAGAACGAAAGGGGATAGGGTTACGTGATAGAGATAACCACACTGAAAGCTATCGGAGAAGCTTCTTCGACGGACGGAAAGTGGCTGCCAAGGCTTCATATCCACAAGCCTGGGAAAGGGAAATGAAGGAAATTAAGAAGGTCAATCTGGAAGCATATAAGTATCTTATGAAAATACCACCTAGACACTGGACTAGGGCATGGTTCAAACCAAATCCTCAATGTGACACACTGTTAAATAACATGTCTGAAGCCTTTAATTCTGTCATTGTTGTCCCAAGACAAAAACCAATAGTGAGTATGATGGAAGATATAAGGAGGTGGTATAAAAATAGGGAGAAAAGTGCATTGTATGAAGGTGACATACTGCCTAAGATCAAAAAGAAGATTGCTAAATTAACTGGATATAGAAATCAGTGGCTAGCAAGATATAATGACTTGCAGCCACCACCCATTAGGAGACAACCTGGAAGGCCAAAGAAAAAGAGGAATAGAGAGGCAGGTGAATTACTCAAAGAAAATGGAGGGTTGAATAAAAAGGGATTGAAGCAAAAATGTAGGAGGTGTAACCAACCTGGGCACAATAAAGCTACATGTAAACTACCTCCTCCACTACCACCTCAACCACAACCAGCAACTCAACCCCCACCTTCACAGCCACCTACTCAACCACCACCTTCACAGCCAGCAACTCAACCACCACCTCAACCACCACCTTCACAGCCACCTACTCAACCACCACCTTCACAGCCAGCAACTCAACCACCACCTATCACCAGAAAATCTCTTACTAAGAGAAAGAGGCCAGAAGCCTCATCTCAGCCAACAACTGAGGTCTCCAATCAAAAGAAGCAGGAAAGAAGACCAGTCATGGCTTCCAACACCAAATTCTTTGCCACCATTTTAGTACTCTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAAAGCCAACACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGGAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTCGGAATAAACTTGAATGTACCTATCGCCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA
Protein sequence

>Msa0432490

MASNKFSALILVLSLLAYSTFTEANCPPSPKPTPSPAPVPPSPKGSKCCALIKGLADLEAALCLCTALKANVLGINLNVPITLSVLLSACQKTVPPVWRERKGIGLRDRDNHTESYRRSFFDGRKVAAKASYPQAWEREMKEIKKVNLEAYKYLMKIPPRHWTRAWFKPNPQCDTLLNNMSEAFNSVIVVPRQKPIVSMMEDIRRWYKNREKSALYEGDILPKIKKKIAKLTGYRNQWLARYNDLQPPPIRRQPGRPKKKRNREAGELLKENGGLNKKGLKQKCRRCNQPGHNKATCKLPPPLPPQPQPATQPPPSQPPTQPPPSQPATQPPPQPPPSQPPTQPPPSQPATQPPPITRKSLTKRKRPEASSQPTTEVSNQKKQERRPVMASNTKFFATILVLSLLAYSTFTEAKGSCSPSPKPKPKPTPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPIALTWILGACQKTIPPGFQCA*